Investigation Title	TCGA Analysis of DNA Methylation for GBM Using Illumina Golden Gate BeadArray platform (IlluminaDNAMethylation_OMA002_CPI_CPI)	
Experimental Design	disease_state_design	
Experimental Design Term Source REF	MGED Ontology	
Experimental Factor Type	disease	 
Experimental Factor Type Term Source REF	MGED Ontology	

Person Last Name	Laird	
Person First Name	Peter	
Person Mid Initials	W	
Person Email	plaird@usc.edu	
Person Phone	323.865.0650	
Person Address	"USC Norris Comprehensive Cancer Center, University of Southern California, CA 90033, USA"	
Person Affiliation	University of Southern California	
Person Roles	submitter	

Quality Control Types	real_time_PCR_quality_control	
Quality Control Types Term Source REF	MGED Ontology				
Replicate Type	bioassay_replicate_reduction				
Replicate Type Term Source REF	MGED Ontology				
Date of Experiment	2008-07-06				
Public Release Date	2008-07-13				


Experiment Description	TCGA Analysis of DNA Methylation for GBM Using Illumina Golden Gate BeadArray platform				

Protocol Name	jhu-usc.edu:labeling:IlluminaDNAMethylation_OMA002_CPI:01	jhu-usc.edu:hybridization:IlluminaDNAMethylation_OMA002_CPI:01	jhu-usc.edu:image_acquisition:IlluminaDNAMethylation_OMA002_CPI:01	jhu-usc.edu:feature_extraction:IlluminaDNAMethylation_OMA002_CPI:01	jhu-usc.edu:within_bioassay_data_set_function:IlluminaDNAMethylation_OMA002_CPI:01
Protocol Type	labeling	hybridization	scan	feature_extraction	normalization
Protocol Term Source REF	MGED Ontology	MGED Ontology	MGED Ontology	MGED Ontology	MGED Ontology
Protocol Description	Illumina DNA methylation Golden Gate Beadarray Labeled Extract	Illumina DNA methylation Golden Gate Beadarray Hybridization Protocol	Illumina DNA methylation Golden Gate Beadarray Scan Protocol	Illumina DNA methylation Golden Gate Beadarray Feature Extraction Protocol	Illumina DNA methylation Golden Gate Beadarray Bioassay Data Transformation
Protocol Parameters					

SDRF Files	jhu-usc.edu_GBM.IlluminaDNAMethylation_OMA002_CPI.1.sdrf.txt				

Term Source Name	MGED Ontology	caArray	BCR
Term Source File	http://mged.sourceforge.net/ontologies/MGEDontology.php	http://caarraydb.nci.nih.gov/	http://www.tgen.org
Term Source Version	1.3.0.1	2007-01	2007-01
