Run_name	Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_A08_190532	FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_A10_190536	FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_A12_190540	FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_B03_190546	FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_B07_190554	FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_B11_190562	FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_C06_190576	FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_C08_190580	FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_C10_190584	FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_C12_190588	FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_D02_190592	FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_D07_190602	FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_D09_190606	FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_E02_190616	FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_E10_190632	FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_E12_190636	FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_F03_190642	FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_F05_190646	FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_F12_190660	FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_G02_190664	FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_G06_190672	FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_G12_190684	FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_H02_190688	FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_H05_190694	FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_H09_190702	GHATS_p_TCGAaffx_B3_GBM_GenomeWideSNP_6_A05_160150	GHATS_p_TCGAaffx_B3_GBM_GenomeWideSNP_6_A10_160230	GHATS_p_TCGAaffx_B3_GBM_GenomeWideSNP_6_A12_160262	GHATS_p_TCGAaffx_B3_GBM_GenomeWideSNP_6_B05_160152	GHATS_p_TCGAaffx_B3_GBM_GenomeWideSNP_6_B08_160200	GHATS_p_TCGAaffx_B3_GBM_GenomeWideSNP_6_C02_160106	GHATS_p_TCGAaffx_B3_GBM_GenomeWideSNP_6_C06_160170	GHATS_p_TCGAaffx_B3_GBM_GenomeWideSNP_6_C10_160234	GHATS_p_TCGAaffx_B3_GBM_GenomeWideSNP_6_C12_160266	GHATS_p_TCGAaffx_B3_GBM_GenomeWideSNP_6_D01_160092	GHATS_p_TCGAaffx_B3_GBM_GenomeWideSNP_6_D04_160140	GHATS_p_TCGAaffx_B3_GBM_GenomeWideSNP_6_D08_160204	GHATS_p_TCGAaffx_B3_GBM_GenomeWideSNP_6_D11_160252	GHATS_p_TCGAaffx_B3_GBM_GenomeWideSNP_6_E04_160142	GHATS_p_TCGAaffx_B3_GBM_GenomeWideSNP_6_E06_160174	GHATS_p_TCGAaffx_B3_GBM_GenomeWideSNP_6_E08_160206	PUNAS_p_Kinome_misc_AFFX_n_GenomeWideSNP_6_A05_238170	PUNAS_p_Kinome_misc_AFFX_n_GenomeWideSNP_6_A06_238172	PUNAS_p_Kinome_misc_AFFX_n_GenomeWideSNP_6_A08_238176	PUNAS_p_Kinome_misc_AFFX_n_GenomeWideSNP_6_A09_238178	PUNAS_p_Kinome_misc_AFFX_n_GenomeWideSNP_6_F12_238304	SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_A03_228722	SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_B02_228708	SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_B12_228868	SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_C03_228726	SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_E12_228874	SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F02_228716	SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F09_228828	SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G04_228750	SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G06_228782	SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G08_228814	SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_H06_228784	SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_H10_228848	STAIR_p_TCGA_Batch7_Affx_N_GenomeWideSNP_6_B03_238382	STAIR_p_TCGA_Batch7_Affx_N_GenomeWideSNP_6_B05_238386	STAIR_p_TCGA_Batch7_Affx_N_GenomeWideSNP_6_B07_238390	STAIR_p_TCGA_Batch7_Affx_N_GenomeWideSNP_6_B10_238396	STAIR_p_TCGA_Batch7_Affx_N_GenomeWideSNP_6_B12_238400	STAIR_p_TCGA_Batch7_Affx_N_GenomeWideSNP_6_C01_238402	STAIR_p_TCGA_Batch7_Affx_N_GenomeWideSNP_6_C03_238406	STAIR_p_TCGA_Batch7_Affx_N_GenomeWideSNP_6_C07_238414	STAIR_p_TCGA_Batch7_Affx_N_GenomeWideSNP_6_C10_238420	STAIR_p_TCGA_Batch7_Affx_N_GenomeWideSNP_6_D01_238426	STAIR_p_TCGA_Batch7_Affx_N_GenomeWideSNP_6_D03_238430	STAIR_p_TCGA_Batch7_Affx_N_GenomeWideSNP_6_D05_238434	STAIR_p_TCGA_Batch7_Affx_N_GenomeWideSNP_6_D08_238440	STAIR_p_TCGA_Batch7_Affx_N_GenomeWideSNP_6_D10_238444	STAIR_p_TCGA_Batch7_Affx_N_GenomeWideSNP_6_E01_238450	STAIR_p_TCGA_Batch7_Affx_N_GenomeWideSNP_6_E03_238454	STAIR_p_TCGA_Batch7_Affx_N_GenomeWideSNP_6_E06_238460	STAIR_p_TCGA_Batch7_Affx_N_GenomeWideSNP_6_E08_238464	STAIR_p_TCGA_Batch7_Affx_N_GenomeWideSNP_6_F12_238496	STAIR_p_TCGA_Batch7_Affx_N_GenomeWideSNP_6_G01_238498	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_A01_155716	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_A05_155780	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_A07_155812	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_A09_155844	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_A11_155876	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_B03_155750_2	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_B05_155782	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_B07_155814	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_B09_155846	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_B11_155878	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_C01_155720	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_C03_155752	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_C05_155784	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_C09_155848	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_C11_155880	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_D03_155754	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_D05_155786	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_D07_155818	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_D09_155850	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_D11_155882	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_E01_155724	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_E03_155756	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_E07_155820	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_E11_155884	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_F01_155726	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_F03_155758	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_F05_155790	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_F07_155822	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_F09_155854	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_F11_155886	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_G01_155728	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_G03_155760	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_G05_155792	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_G07_155824	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_G09_155856	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_H01_155730	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_H03_155762	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_H05_155794	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_H07_155826	TRIBE_p_TCGAaffx_B1_2_GBM_Nsp_GenomeWideSNP_6_H09_155858	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_A02_223102	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_A03_223118	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_A05_223150	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_A06_223166	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_A07_223182	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_A08_223198	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_A09_223214	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_A11_223246	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_A12_223262	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_B02_223104	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_B03_223120	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_B04_223136	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_B05_223152	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_B06_223168	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_B07_223184	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_B08_223200	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_B09_223216	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_B11_223248	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_B12_223264	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_C01_223090	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_C02_223106	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_C03_223122	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_C04_223138	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_C06_223170	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_C07_223186	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_C08_223202	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_C09_223218	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_C10_223234	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_C11_223250	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_C12_223266	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_D02_223108	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_D03_223124	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_D04_223140	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_D05_223156	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_D06_223172	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_D07_223188	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_D08_223204	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_D10_223236	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_D11_223252	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_D12_223268	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_E01_223094	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_E02_223110	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_E03_223126	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_E04_223142	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_E06_223174	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_E08_223206	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_E09_223222	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_F01_223096	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_F02_223112	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_F03_223128	TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_F04_223144	
Broad_standard_080606	Amplification Peak 1	1q32.1  	chr1:202598676-202796340(probes 103436:103581)	chr1:202664385-202796340(probes 103451:103581)	chr1:201327874-203776864(probes 102600:104231)	1.0393e-12	  1.0393e-12	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	1	2	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	1	2	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	2	0	0	0	1	0	2	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	
Broad_standard_080606	Amplification Peak 2	3q26.1  	chr3:163941034-164200420(probes 367016:367056)	chr3:163941034-164200420(probes 367016:367056)	chr3:163941034-164208852(probes 367016:367058)	0.011211	    0.011211	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	1	0	0	0	0	1	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	1	0	1	0	1	0	1	0	1	1	0	0	1	0	0	0	0	1	0	0	0	0	1	0	0	0	1	1	0	0	1	0	0	1	1	1	0	0	0	1	0	0	0	1	1	0	0	0	0	
Broad_standard_080606	Amplification Peak 3	4q12    	chr4:54506016-54554815(probes 417572:417592)    	chr4:54516108-54540980(probes 417573:417583)    	chr4:52465303-57925873(probes 416315:419872)    	2.7595e-27	  2.7594e-27	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	1	0	0	2	0	2	0	0	1	0	0	2	1	2	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	2	2	2	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	1	2	0	
Broad_standard_080606	Amplification Peak 4	7p14.3  	chr7:32968945-33000366(probes 723765:723775)    	chr7:32984214-32991712(probes 723771:723772)    	chr7:1-158620555(probes 703357:791619)           	3.2439e-73	   0.0002867	both	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	1	1	0	1	1	1	2	2	0	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	1	1	0	0	1	1	1	0	1	2	1	1	1	1	1	0	2	0	0	1	0	0	1	1	1	0	1	1	1	0	1	1	1	0	1	1	0	1	1	1	0	1	1	1	1	1	1	1	2	1	0	1	1	1	1	1	0	0	0	1	0	1	0	1	1	1	1	1	0	1	1	1	1	0	0	1	1	0	0	1	1	1	0	1	1	1	1	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	1	0	1	1	1	1	1	1	1	0	1	1	0	0	0	1	0	1	0	1	1	1	1	1	1	0	1	0	2	1	1	0	1	2	1	2	0	1	1	1	
Broad_standard_080606	Amplification Peak 5	7p11.2  	chr7:54921812-54988715(probes 738402:738445)    	chr7:54931889-54975909(probes 738412:738437)    	chr7:1-158620555(probes 703357:791619)           	3.8301e-229	 3.8301e-229	both	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	2	1	2	2	1	2	2	2	2	0	2	2	1	2	1	1	1	2	1	1	1	1	1	2	2	0	1	2	2	0	0	2	2	1	0	2	2	2	2	2	2	1	1	1	2	2	2	0	2	1	1	1	0	2	2	2	0	2	1	1	2	1	2	0	1	1	1	2	2	2	2	2	2	1	2	2	1	0	1	2	1	2	2	0	0	0	2	0	1	0	1	1	2	2	2	0	1	1	1	1	0	0	2	1	1	0	1	1	1	2	2	2	2	1	1	2	0	1	2	1	1	1	0	2	2	1	1	2	2	2	0	2	2	1	1	1	2	1	0	2	1	0	2	0	2	0	2	0	1	2	1	1	1	1	0	1	0	2	1	1	0	2	2	1	2	1	2	1	1	
Broad_standard_080606	Amplification Peak 6	7q31.2  	chr7:116101460-116366278(probes 766578:766844)	chr7:116101460-116138040(probes 766578:766656)	chr7:1-158620555(probes 703357:791619)           	1.0278e-86	   4.163e-12	both	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	0	1	1	1	0	0	0	1	0	1	1	1	1	1	1	1	1	1	1	0	1	0	0	0	1	1	1	0	0	1	1	1	1	1	1	2	1	2	0	2	1	1	0	1	1	1	1	1	1	1	0	1	0	1	1	1	0	1	2	0	0	1	2	1	0	1	1	1	1	1	0	1	1	1	1	0	0	1	1	1	1	1	1	1	0	1	1	1	1	1	1	0	1	1	1	1	1	2	0	1	1	1	1	1	1	0	1	2	2	1	1	1	2	1	1	1	0	1	0	1	0	1	0	1	1	1	1	1	1	1	1	0	0	1	1	0	1	0	1	1	1	1	1	1	
Broad_standard_080606	Amplification Peak 7	7q35    	chr7:145095043-145390033(probes 783694:783861)	chr7:145095043-145141872(probes 783694:783715)	chr7:1-158620555(probes 703357:791619)           	1.0766e-68	    0.017135	broad	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	0	1	1	1	0	0	0	1	1	0	1	1	1	1	1	1	1	0	0	0	1	1	0	0	1	1	1	0	0	1	1	0	1	1	1	2	1	1	0	1	1	1	0	1	1	1	1	1	1	1	0	1	0	1	1	1	0	1	0	0	1	1	0	1	0	1	1	1	1	1	0	1	1	1	1	0	0	1	1	0	1	1	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	2	0	1	1	1	1	1	1	0	1	2	1	1	1	1	1	1	1	1	0	1	0	1	0	1	0	1	1	1	1	1	1	1	1	0	1	1	1	0	1	0	1	1	1	1	1	1	
Broad_standard_080606	Amplification Peak 8	12q14.1 	chr12:56370612-56480203(probes 1143884:1143894)	chr12:56370612-56459195(probes 1143884:1143887)	chr12:55964838-57809915(probes 1143704:1144863)	7.3632e-33	  7.3632e-33	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	2	2	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	1	2	2	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	2	1	0	0	2	0	0	2	0	0	0	0	0	0	0	0	1	0	2	0	0	0	1	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	2	0	2	0	0	
Broad_standard_080606	Amplification Peak 9	12q15   	chr12:67469546-67551864(probes 1150808:1150887)	chr12:67501958-67546694(probes 1150840:1150881)	chr12:67309328-68251565(probes 1150731:1151346)	1.8677e-21	  2.3488e-16	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	2	2	2	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	1	0	0	0	0	2	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	1	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	1	0	0	
Broad_standard_080606	Amplification Peak 10	19p13.3 	chr19:1-1107396(probes 1478760:1478944)             	chr19:636217-735558(probes 1478903:1478913)        	chr19:1-63558485(probes 1478760:1504472)          	2.9482e-18	  2.9482e-18	broad	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	1	0	1	1	1	0	0	0	1	1	1	1	0	0	1	1	1	1	0	0	0	1	0	1	0	1	0	0	1	0	0	1	0	0	0	1	1	1	1	0	1	0	0	0	0	0	1	0	1	1	0	1	0	1	1	1	2	1	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	0	1	1	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	1	1	1	0	1	0	0	1	0	0	0	1	0	1	1	0	0	0	1	0	0	1	1	0	0	0	0	0	0	1	1	0	0	1	0	0	1	0	0	1	0	1	1	0	1	0	0	0	0	0	0	1	1	0	1	0	0	0	1	
Broad_standard_080606	Amplification Peak 11	20q13.33	chr20:61629913-61684982(probes 1544373:1544383)	chr20:61629913-61657677(probes 1544373:1544375)	chr20:1-62386511(probes 1504474:1544659)          	1.0643e-13	  1.0643e-13	broad	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	1	1	1	0	0	0	1	0	1	0	1	0	0	1	0	0	1	1	1	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	1	1	1	1	1	0	0	0	0	0	1	0	1	0	2	1	0	1	1	1	1	1	1	0	0	0	0	1	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	1	1	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	1	0	0	1	1	0	1	0	1	1	0	0	1	0	1	0	0	0	0	1	0	1	1	1	0	0	0	1	0	0	1	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	1	1	1	0	0	0	1	
Broad_standard_080606	Deletion Peak 1	1p36.23 	chr1:7736227-8140063(probes 2661:2908)                	chr1:7869861-7923474(probes 2764:2793)                	chr1:7673002-8285834(probes 2633:2993)            	0.012341	    0.012342	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	1	1	0	0	1	0	2	
Broad_standard_080606	Deletion Peak 2	6q24.1  	chr6:138803101-140224037(probes 682638:683573)    	chr6:140211168-140224037(probes 683562:683573)    	chr6:107349600-170745840(probes 664295:703355)	4.1103e-06	  4.1103e-06	broad	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	1	1	0	0	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	1	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	1	0	1	0	1	0	1	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	1	0	0	0	0	1	1	1	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	1	
Broad_standard_080606	Deletion Peak 3	9p21.3  	chr9:21981924-21999959(probes 892268:892296)        	chr9:21995331-21999959(probes 892296:892296)        	chr9:1-70234709(probes 875276:902673)             	7.0444e-213	 7.0445e-213	both	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	2	2	2	2	1	0	1	2	1	1	2	0	2	1	1	1	0	2	0	2	0	0	0	0	2	0	0	2	2	0	0	2	1	0	0	2	2	2	2	1	2	2	0	0	1	1	1	0	2	1	1	2	0	2	0	2	0	1	0	2	0	0	2	0	2	0	2	2	0	0	1	0	1	2	2	2	1	0	1	0	0	1	2	1	0	2	2	2	2	0	0	2	2	2	0	2	0	1	0	1	1	0	2	0	0	1	0	1	1	1	0	1	2	2	1	1	1	0	1	2	2	1	2	2	2	0	1	2	0	2	1	2	2	2	1	0	0	2	2	2	1	0	2	0	1	0	2	1	1	2	0	1	1	2	1	0	1	1	2	2	2	2	2	1	0	0	1	2	2	
Broad_standard_080606	Deletion Peak 4	10p13   	chr10:12619611-12624214(probes 957366:957377)      	chr10:12621793-12622789(probes 957372:957374)      	chr10:1-135056862(probes 948239:1031626)         	4.559e-79	  5.6183e-06	broad	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	1	1	1	1	1	1	1	1	1	0	2	1	1	1	1	1	0	1	1	1	1	1	1	1	1	0	1	0	1	0	1	1	1	0	0	1	1	0	1	1	1	1	0	1	1	1	0	0	1	1	1	1	0	1	1	1	0	1	1	1	1	2	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	0	0	1	1	0	1	0	0	0	1	1	1	0	1	1	1	1	1	0	1	0	1	1	0	0	2	0	1	0	1	2	1	0	1	1	1	1	1	1	0	1	1	1	1	1	1	1	0	0	1	1	1	1	0	1	1	1	0	1	0	1	0	0	0	0	1	0	1	1	0	1	1	1	1	1	1	1	0	1	0	1	0	1	1	1	1	1	1	1	1	1	1	
Broad_standard_080606	Deletion Peak 5	10q26.3 	chr10:131005136-132460161(probes 1029489:1030637)	chr10:131005136-131016491(probes 1029489:1029499)	chr10:1-135056862(probes 948239:1031626)         	1.0836e-99	  1.0836e-99	broad	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	0	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	0	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	1	1	1	1	1	1	1	1	0	1	0	1	1	1	1	1	0	1	0	1	1	1	0	1	1	1	0	1	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	0	1	1	1	1	0	1	1	1	0	1	1	0	1	1	0	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	0	1	1	1	1	1	1	1	1	1	1	
Broad_standard_080606	Deletion Peak 6	11p15.5 	chr11:1-357138(probes 1031628:1031711)                 	chr11:303924-356434(probes 1031697:1031709)            	chr11:1-1615883(probes 1031628:1032035)           	0.041593	    0.041593	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	1	1	1	0	1	0	0	0	1	0	1	0	0	0	1	0	0	1	1	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	1	1	0	
Broad_standard_080606	Deletion Peak 7	13q14.3 	chr13:49304288-49343738(probes 1212535:1212552)    	chr13:49304288-49343738(probes 1212535:1212552)    	chr13:1-113964073(probes 1191424:1252612)     	1.378e-20	   1.378e-20	broad	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	1	0	0	0	1	0	0	0	0	1	0	0	1	0	1	1	0	0	1	0	1	1	0	0	1	0	1	1	0	0	1	1	0	0	0	1	0	0	0	0	0	1	0	1	1	0	0	1	1	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	0	1	0	1	2	0	1	0	1	1	0	1	1	0	0	1	0	1	1	0	0	0	0	0	1	1	1	0	0	1	0	0	1	0	1	1	0	0	1	1	0	0	1	0	1	1	0	0	1	1	1	1	0	0	1	0	0	0	1	0	1	0	0	1	1	1	1	0	0	0	0	1	0	2	0	1	1	1	1	0	1	1	1	0	0	1	0	0	0	0	0	1	1	1	0	1	0	
Broad_standard_080606	Deletion Peak 8	14q32.31	chr14:100455109-100527548(probes 1298692:1298728)	chr14:100455109-100491485(probes 1298692:1298705)	chr14:1-103049295(probes 1252614:1299942)     	1.13e-08	    1.13e-08	broad	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	1	0	0	0	1	0	0	0	1	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	1	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	1	1	0	0	0	1	0	1	1	0	0	1	0	0	0	0	0	0	0	1	0	0	1	0	1	1	0	1	1	0	0	1	0	0	0	0	0	1	0	0	0	1	0	1	1	1	1	0	0	0	1	0	0	1	0	0	0	1	0	1	0	0	1	0	0	0	0	1	1	0	0	1	1	0	0	0	0	1	1	1	1	1	0	0	0	0	0	0	0	0	1	0	0	
Broad_standard_080606	Deletion Peak 9	22q13.31	chr22:44158151-44579710(probes 1578083:1578370)    	chr22:44555126-44558958(probes 1578358:1578359)    	chr22:1-49578523(probes 1566761:1578578)       	2.8254e-09	  2.8255e-09	broad	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	1	0	1	0	0	0	0	0	0	1	0	0	1	1	1	0	0	1	1	1	1	0	1	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	1	1	0	1	0	1	0	0	0	0	0	0	1	1	0	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	1	1	1	0	1	0	0	0	0	0	1	0	1	1	1	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	1	1	0	0	1	1	0	0	0	1	1	1	1	0	0	1	
Broad_standard_080606	Amplification Peak 1 - log2 ratios	1q32.1  	chr1:202598676-202796340(probes 103436:103581)	chr1:202664385-202796340(probes 103451:103581)	chr1:201327874-203776864(probes 102600:104231)	1.0393e-12	  1.0393e-12	focal	Actual Log2 Ratio Given	-0.003	0.0098	0.78202	-0.0033	0.0261	0.0335	0.029684	0.0054	0.15558	-0.0536	0.7758	0.013455	0.19522	0.12392	0.098469	0.044351	0.0658	0.01385	0.3615	0.0246	-0.0137	0.19271	0.44409	1.5002	0.0282	-0.029886	0.0611	1.5213	0.0058	-0.017128	0.060923	-0.0060476	0.34499	0.023	-0.044053	-0.0072	-0.016914	0.0033874	-0.075099	0.0083	0.00017938	1.5126	-0.023587	0.0435	-0.021674	0.0058171	0.21312	0.1434	0.029281	0.0096228	0.0091836	0.074792	0.037	0.042143	0.21888	1.4721	0.37272	0.078298	0.0014	0.011092	0.047773	-0.0033461	0.033457	-0.1252	0	-0.0981	-0.0109	-0.0005	0.17752	0.28943	0.16181	0.11598	-0.0079	-0.0022782	-0.0054	0.43474	-0.003971	0.0135	0.1513	0.015777	0.0039496	1.4322	-0.0083	0.0651	-0.0017	0.3235	-0.0112	0.28373	0.0022451	0.5126	0.02619	-0.066418	-4.4858e-05	0.0049626	-0.00014376	0.0449	0.087234	0.047954	0.034321	0	-0.0209	-0.0157	1.4417	-0.071883	-0.0091179	-0.0261	-0.025576	0.0339	0.002203	-0.092232	-0.0056943	-0.014828	-0.0176	0.018065	-0.045649	-0.026105	0.0102	0.3852	0.32198	-0.046775	-0.0538	0.29062	0.1018	1.4629	0.011797	-0.019745	-0.037734	0.33698	-0.021622	1.4848	-0.0328	-0.00091331	0.1678	-0.0351	-0.012147	0.12589	0.34496	-0.039818	-0.0464	0.1741	-0.0512	0.7407	0.0228	-0.02575	-0.0106	0.0365	-0.0983	-0.04085	1.0267	0.0138	1.4949	-0.034246	-0.015205	-0.014259	-0.0735	0.029199	-0.0046951	0.3734	-0.0264	-0.23612	-0.030629	-0.0076	0.53442	-0.0156	-0.045976	-0.10124	0.048485	-0.035032	-0.0191	
Broad_standard_080606	Amplification Peak 2 - log2 ratios	3q26.1  	chr3:163941034-164200420(probes 367016:367056)	chr3:163941034-164200420(probes 367016:367056)	chr3:163941034-164208852(probes 367016:367058)	0.011211	    0.011211	focal	Actual Log2 Ratio Given	-0.071009	0.0047297	-0.033586	0.07505	0.0041	0.030957	0.17992	0.0353	0.045176	-0.29809	0.1306	0.18058	0.35587	0.31118	0.15547	0.017382	0.0008	0.52935	0.011882	0.0044	0.0872	0.037476	0.068421	0.0298	-0.2145	0.042714	-0.0443	0.098253	-0.0053	0.151	-0.16516	0.13415	0.026439	0.0191	0.13559	0.065	0.087586	0.19575	0.10091	0.0205	0.16782	0.0876	0.055	0.0849	0.0446	0.0542	-0.16777	-0.038639	-0.0398	-0.012645	-0.10864	-0.0096829	-0.0304	-0.0223	-0.078065	0.064312	-0.27702	-0.058714	0.18164	0.6366	0.072873	0.038317	0.1444	-0.1627	0.5988	0.079292	0.1547	0.0008	0.093225	0.35811	-0.0062	-0.11679	0.1004	0.068665	0.0552	0.57654	0.1861	-0.1456	0.3299	0.007177	-0.2331	0.06918	0.0417	0.1146	0.0382	-0.0306	0.0572	0.15827	0.0884	0.62273	0.04349	0.073117	0.057155	0.0005	0.11521	0.29948	0.20185	-0.4312	-0.049879	0.01799	0.0295	0.0123	0.05261	0.18672	0.07687	0.0168	0.0853	0.0094323	0.005603	0.21309	0.0419	0.033572	0.058	0.074028	0.093897	0.031122	0.0037	-0.1335	0.30668	0.48689	0.31241	-0.0079661	0.35093	0.0073	0.1872	0.019317	0.26327	0.025271	0.21359	0.2539	-0.3479	-0.0095133	0.26063	0.0622	-0.021833	0.10571	-0.27124	0.79311	0.0485	0.0101	0.14266	0.0043436	0.27925	0.0134	-0.0203	0.1522	0.2922	0.36173	-0.561	0.0158	0.19731	0.029054	0.092572	0.3213	0.1779	0.2694	0.1476	0.1624	0.0827	0.6452	0.014	0.0316	0.0069159	0.31651	0.19191	0.027762	0.0023644	0.031148	0.0529	
Broad_standard_080606	Amplification Peak 3 - log2 ratios	4q12    	chr4:54506016-54554815(probes 417572:417592)    	chr4:54516108-54540980(probes 417573:417583)    	chr4:52465303-57925873(probes 416315:419872)    	2.7595e-27	  2.7594e-27	focal	Actual Log2 Ratio Given	0.0184	0.1574	0.0064171	0.0189	0.015492	-0.1041	0.8506	-0.032284	-0.032962	1.4743	0.0429	1.4931	0.02302	0.0037227	0.66277	0.068182	-0.0358	1.5192	0.17623	1.4489	0.004	-0.026487	0.017721	0.0007	1.4205	-0.0066856	0.1056	1.2811	-0.0083276	0.0401	-0.0044769	0.017552	0.0122	0.0147	0.040655	0.0106	0.017186	0.024	0.010299	0.0234	-0.0017725	1.1761	0.0676	0.0057	0.0238	0.012111	-0.028838	-0.0063	-0.0276	0.0066232	0.010863	1.4679	-0.0084941	0.0016	0.016374	-0.028463	1.5306	0.7278	1.4114	0.0179	0.20267	0.057557	0.024296	0.062023	0.027	0.0387	0.0236	-0.0208	0.081125	-0.15361	-0.10585	-0.20967	0.0117	0.017922	0.0602	0.020872	-0.037557	-0.3102	-0.0113	0.003077	0.0199	0.030452	0.0137	-0.0341	0.0289	1.4458	0.0174	1.4714	0.047731	0.0251	0.00679	0.8677	0.025655	0.0027	0.015256	0.027113	0.029734	-0.0844	0.13422	0.0049474	0.0345	1.253	0.047513	1.4922	0.027208	-0.15143	0.28708	0.0144	0.003903	0.048	0.0112	0.027492	0.0163	0.068595	0.058697	0.034922	-0.0238	0.42572	0.011984	0.1118	1.4525	1.5061	1.4638	0.0965	-0.4274	0.019169	0.073866	0.11267	0.080673	0.6786	0.35352	0.056287	-0.0306	0.6519	-0.015	-0.049887	0.10656	0.05411	0.072819	0.21	0.1136	1.5213	0.0731	0.09125	0	-0.24263	0.0478	0.0524	-0.0366	0.0259	0.0076112	-0.070914	0.023486	0.0071793	-0.1371	-0.038201	-0.040495	0.1427	0.00014679	0.21916	0.0748	0.038082	0.051816	0.0176	1.498	0.051462	0.17109	1.4765	0.0412	
Broad_standard_080606	Amplification Peak 4 - log2 ratios	7p14.3  	chr7:32968945-33000366(probes 723765:723775)    	chr7:32984214-32991712(probes 723771:723772)    	chr7:1-158620555(probes 703357:791619)           	3.2439e-73	   0.0002867	both	Actual Log2 Ratio Given	0.0019916	0.4548	0.58522	0.1055	0.3277	0.51534	0.62643	1.1502	1.5594	-0.1288	1.3754	0.66645	0.43689	0.63358	0.42326	0.33731	0.29642	0.50105	0.56679	0.83719	0.50243	0.74441	0.44869	0.49432	0.4059	0.013414	0.35672	0.37096	0.40238	0.039802	0.042518	0.39244	0.44074	0.17315	0.12864	0.34662	1.2198	0.4837	0.48199	0.3362	0.4331	0.36454	0.12057	0.9593	0.0002	0.16901	0.24303	-0.076558	-0.024333	0.36448	0.31426	0.35192	-0.024318	0.42777	0.34503	0.41637	-0.69076	0.27	0.3392	0.52029	0.16964	0.44795	0.5155	0.0277	0.32303	0.5374	0.6429	0.05007	0.47068	0.47143	0.4106	0.56561	0.6086	0.42674	0.4946	1.136	0.32988	0.0328	0.70336	0.49316	0.3538	0.8856	0.5032	0.0665	0.0053	0.01963	0.50672	0.068451	0.3267	0.010962	0.24909	0.467	0.44853	0.50578	0.5	-0.004	0.25813	0.57	0.22812	0.2446	0.0086	-0.018581	0.42041	0.35052	0.15168	0.0019	0.54679	0.4386	0.2726	0.0067	0.503	0.39138	0.52587	0.52839	0.3605	0.41342	0.0074	0.39649	0.46563	0.4637	0.4054	0.55873	-0.22795	-0.030623	0.47773	0.76202	0.32437	0.47156	0.24732	0.8029	-0.3757	0.78069	0.5225	0.2614	0.28838	0.19701	0.46216	0.51921	0.0319	0.5014	0.28663	-0.0121	-0.011646	0	0.288	0.038261	0.51418	0.0096346	0.3789	0.46643	0.74611	0.29975	0.3106	0.4541	0.018986	0.2753	-0.054895	1.4191	0.4271	0.70424	0.0691	0.5302	1.4817	0.32815	1.498	0.00065436	0.53499	0.35896	0.42819	
Broad_standard_080606	Amplification Peak 5 - log2 ratios	7p11.2  	chr7:54921812-54988715(probes 738402:738445)    	chr7:54931889-54975909(probes 738412:738437)    	chr7:1-158620555(probes 703357:791619)           	3.8301e-229	 3.8301e-229	both	Actual Log2 Ratio Given	1.4927	0.4548	1.4918	1.4761	0.37283	1.4746	1.5101	1.4644	1.5594	-0.14494	1.4889	1.4931	0.47232	1.4604	0.33519	0.38068	0.3324	1.5192	0.65953	0.56808	0.5246	0.75001	0.44869	1.5002	1.4205	-0.014689	0.3493	1.5213	1.4911	0.0332	0.034523	1.4738	1.5937	0.2108	0.12864	1.4693	1.5029	1.5108	1.525	1.5108	1.5049	0.4044	0.1812	0.7513	1.4339	1.5005	1.5025	-0.0038	1.4851	0.37152	0.33719	0.37882	0.023919	1.4903	1.4765	1.4721	-0.52513	1.176	0.3392	0.5357	1.4739	0.45785	1.4691	0.0277	0.3456	0.5236	0.6429	1.5109	1.4778	1.4851	1.5469	1.1917	1.5245	0.42872	1.487	1.4622	0.3641	0.073303	0.69128	1.4583	0.3642	1.4057	1.4736	0.034889	-0.017779	-0.018568	1.4941	0.04997	0.3343	-0.0175	0.24069	0.42703	1.4785	1.4946	1.4829	-0.0278	0.21206	0.56851	0.19882	0.2275	0.014016	0.0013	1.5514	0.36081	0.21178	-0.0018849	0.5479	0.4184	0.2659	1.4756	1.5272	1.5057	1.5073	0.50699	0.36229	1.5149	-0.012518	0.4072	1.4958	0.5167	0.41208	0.60036	-0.21421	1.4629	1.4375	0.80816	0.33979	1.502	1.5403	1.4848	-0.34674	1.4975	1.4623	0.32067	0.3479	0.22132	1.5524	0.52605	-0.763	1.5478	0.1775	-0.0068095	1.4552	0	1.0302	0.12117	1.5243	0.0558	0.42547	1.4795	0.74873	0.29355	0.33056	0.4541	0.018986	0.29378	0.044005	1.0541	0.4765	0.69226	0.10264	1.4888	1.4817	0.3928	1.4964	0.3104	1.5005	0.35442	0.4407	
Broad_standard_080606	Amplification Peak 6 - log2 ratios	7q31.2  	chr7:116101460-116366278(probes 766578:766844)	chr7:116101460-116138040(probes 766578:766656)	chr7:1-158620555(probes 703357:791619)           	1.0278e-86	   4.163e-12	both	Actual Log2 Ratio Given	0.0212	0.2221	0.66282	0.4699	0.39322	0.5789	0.7612	0.6706	0.39508	0.50373	0.4528	0.71205	0.50822	0.70512	0.12997	0.38148	0.3541	0.54325	0.65492	0.60499	0.60067	0.80861	0.52952	0.5621	0.4615	0.026114	0.3524	0.41426	0.4335	0.0935	0.071999	0.019952	0.64129	0.1697	0.21599	0.3866	0.52329	0.56	0.55091	0.3822	0.4703	0.5027	0.1897	0.8075	0.0212	0.2096	0.11466	-0.012957	-0.0199	0.34662	0.30046	0.36726	-0.011911	-0.04678	0.33263	0.32316	0.35853	0.2081	0.41794	0.6016	1.4813	0.53055	0.9816	0.0656	1.5212	0.6126	0.6826	0.0351	0.50603	0.50346	0.5575	0.63711	0.67237	0.45012	0.568	0.083742	0.3848	0.0811	0.7565	0.50838	0.3819	0.0518	0.5162	0.9895	0.0275	-0.0033	0.49634	1.4714	0.3603	0.0188	0.27879	0.545	0.48856	0.5238	0.51026	0.019539	0.28363	0.6193	0.22622	0.2722	0.0264	0.0374	0.48131	0.42581	0.18388	0.8205	0.6052	0.4539	0.2779	0.079142	0.51254	0.43337	0.5336	0.55458	0.4131	0.44232	-0.015962	0.4401	0.59168	0.5687	0.4508	0.47983	1.4638	0.031513	0.3102	0.82129	0.34557	0.55077	0.29027	0.8776	-0.39047	0.82139	0.9252	1.4797	0.28706	0.22132	0.53013	1.6002	0.376	0.5694	0.4266	0.032211	0.4536	0.1202	0.3225	0.045	0.6252	0.034	0.29082	0.5336	0.80601	0.29865	0.3634	0.4828	0.67896	0.2669	0.085105	0.1015	0.4869	0.74466	0.070074	0.6012	0.010616	0.3773	0.30962	0.27245	0.64658	0.43742	0.4244	
Broad_standard_080606	Amplification Peak 7 - log2 ratios	7q35    	chr7:145095043-145390033(probes 783694:783861)	chr7:145095043-145141872(probes 783694:783715)	chr7:1-158620555(probes 703357:791619)           	1.0766e-68	    0.017135	broad	Actual Log2 Ratio Given	0.0316	0.17894	0.60392	0.4608	0.3425	0.5097	0.6332	0.61874	0.34258	0.4345	0.51067	0.67145	0.42475	0.65173	0.094379	0.35908	0.3147	0.50225	0.5416	0.5618	0.5082	0.74671	0.47482	0.5047	0.4487	-0.0011856	0.2025	0.33346	0.4109	0.0948	0.050123	-0.016748	0.54769	0.1984	0.13359	0.3317	0.53319	0.5111	0.49301	0.3413	0.4516	0.3988	0.1095	0.0768	-0.0058	0.1858	0.18517	-0.13099	0.0309	0.33427	0.32976	0.38742	0.021	0.0345	0.39383	0.4263	-0.1136	0.23355	0.3405	0.5377	1.4813	0.44755	0.8938	0.02	0.3675	0.5391	0.6364	0.0399	0.45199	0.47243	0.3768	0.58891	0.6251	0.42522	0.5023	0.037664	0.3411	0.036094	0.7224	0.50408	0.3558	0.0227	0.4956	0.0934	0.0437	0.3786	0.4886	-0.31383	0.3397	-0.87515	0.23309	0.4607	0.39476	0.4807	0.46616	0.05	0.25653	0.5864	0.23372	0.22633	0.0062	-0.0060253	0.39611	0.31612	0.15734	0.76122	0.5368	0.4159	0.2562	0.49603	0.4754	0.37407	0.5174	0.49639	0.3688	0.40392	-0.0162	0.4339	0.52818	0.4531	0.48369	0.68283	1.4638	0.023343	0.3217	0.77272	0.35947	0.42967	0.35147	0.8813	-0.3567	0.80869	0.9417	0.2435	0.3176	0.19201	0.47896	0.52431	0.5305	0.52248	0.3205	0.050298	0.4043	0.073274	0.2989	0.048706	0.75129	0.0993	0.4326	0.4978	0.81791	0.30445	0.3214	0.5151	0.6158	0.3157	0.060505	0.6088	0.4713	0.27141	0.058825	0.5253	0.033016	0.3954	0.24932	0.34023	0.59879	0.39792	0.1903	
Broad_standard_080606	Amplification Peak 8 - log2 ratios	12q14.1 	chr12:56370612-56480203(probes 1143884:1143894)	chr12:56370612-56459195(probes 1143884:1143887)	chr12:55964838-57809915(probes 1143704:1144863)	7.3632e-33	  7.3632e-33	focal	Actual Log2 Ratio Given	0.0306	0.0024	0.0059212	0.0174	0.0157	1.4746	1.4494	0.051263	0.023523	1.4743	-0.0037998	1.4931	0.03332	-0.31048	0.039369	-0.17802	-0.0194	-0.00215	-0.0656	-0.0003	-0.43657	0.026001	0.0045211	1.5002	0.0329	1.4439	0.015873	0.032356	1.4911	0.0425	1.4452	0.016281	0.003087	-0.0956	0.074443	0.0125	0.011856	0.0029132	0.0091144	0.0068	0.0141	0.0386	0.0254	-0.43089	0.3982	0.0003	0.30233	0.0351	0.1491	0.37242	-0.011839	0.16742	0.0908	-0.0291	-0.014271	-0.031277	0.89437	0.083559	0.0383	0.0063	0.047473	1.5047	0.042496	-0.5972	0.0173	1.4942	-0.0333	0.0012	-0.092075	-0.34587	-0.0033	-0.22399	0.0216	0.0093711	0.0314	-0.036958	-0.0881	1.4721	0.23622	1.4583	1.4722	0.012077	0.0152	0.0875	0.0194	0.0334	0.010255	0.56727	-0.0147	0.0108	-0.00301	0.0092	0	0.0177	1.4858	-0.006081	-0.0017663	0.31067	-0.26828	0.0026	-0.0008	0.1191	-0.30789	1.4922	0.74238	-0.0012412	-0.4147	1.2968	0.018703	0.0171	1.5272	0.016366	0.0102	0.029654	0.032797	0.021822	0.0013	-0.20726	0.034684	0.1843	-0.020209	1.5061	-0.092	-0.2699	-0.022003	0.54002	-0.010287	0.015371	0.025373	0.6822	-0.064669	0	0.0016	0.05981	-0.019359	-0.0066869	1.5524	-0.018117	0.0302	0.0376	-0.0004	0.0116	-0.039592	-0.3344	-0.0097	-0.2674	0.0067936	0.022398	0.0164	0.0246	-0.20458	0.0024537	0.0417	0.015148	0.002	1.4973	0.028905	1.4191	0.0015	-0.089542	0.0334	0.0030983	-0.0091896	0.1064	1.498	-0.015938	1.5005	0.049318	0.0482	
Broad_standard_080606	Amplification Peak 9 - log2 ratios	12q15   	chr12:67469546-67551864(probes 1150808:1150887)	chr12:67501958-67546694(probes 1150840:1150881)	chr12:67309328-68251565(probes 1150731:1151346)	1.8677e-21	  2.3488e-16	focal	Actual Log2 Ratio Given	-0.014858	0.0024	0.0059212	0.0174	0.0157	1.4746	1.5101	1.4644	1.5594	-0.1419	-0.0037998	1.4931	0.03332	-0.31048	0.039369	-0.17802	-0.0248	-0.00215	-0.0656	-0.0003	-0.43657	0.026001	0.0045211	0.0062	1.4011	0.042914	0.015873	-0.0060743	0.0065605	0.0425	-0.00017687	0.016281	0.003087	-0.0956	0.0028091	0.0125	0.011856	0.0029132	0.021991	0.032053	0.0141	0.0386	0.0254	-0.43089	0.020783	0.0003	-0.031843	-0.0085	0.02	0.37242	-0.033424	-0.023554	0.0032971	-0.0291	-0.014271	-0.031277	0.37111	-0.0242	-0.060711	1.4995	1.4813	0.016754	0.042496	-0.65657	0.0173	0.0299	-0.0333	0.0012	-0.13518	-0.34587	-0.0033	-0.22399	0.0216	0.0093711	0.0314	-0.036958	-0.11265	1.471	0.23622	0.012177	1.4722	0.0036	-0.0021039	0.0875	0.0194	0.0232	0.010255	0.55897	0.033201	0.0108	-0.00301	0.0092	0	0.0177	0.021956	0.0164	1.4957	0.31067	-0.26828	0.0026	-0.0008	-0.0010969	1.5514	0.089518	0.047782	0.0251	-0.4147	1.4493	0.018703	0.0171	1.5272	0.025072	0.0102	0.055195	0.061622	0.014949	0.0013	-0.17597	0.034684	0.1843	-0.0176	1.5061	-0.092	-0.2699	0.060299	0.54002	0.042466	0.015371	0.045741	0.0252	0.0576	0	0.0016	0	0.0056	-0.0066869	1.5524	-0.018117	0.0302	0.0308	-0.0004	0.0253	0.046638	-0.3344	0.0026	-0.263	0.0202	0.022398	1.4343	0.0246	-0.11829	0.0024537	0.0417	0.015148	0.002	-0.0073008	0.028905	1.3618	0.0015	-0.089542	0.0334	0.0030983	-0.0091896	0.1064	0.022573	1.4726	0.228	0.049318	0.0482	
Broad_standard_080606	Amplification Peak 10 - log2 ratios	19p13.3 	chr19:1-1107396(probes 1478760:1478944)             	chr19:636217-735558(probes 1478903:1478913)        	chr19:1-63558485(probes 1478760:1504472)          	2.9482e-18	  2.9482e-18	broad	Actual Log2 Ratio Given	0.63517	0.0554	0.64862	0.5135	0.4359	0.0939	0.0784	0.0538	0.43668	0.53574	0.20827	0.55725	-0.0097797	0.15313	0.34127	0.48588	0.17673	0.52665	0.1366	0.1363	0.0815	0.30811	0.090921	0.7299	0.1319	0.49581	0.0502	-0.003744	0.51623	0.0881	0.12192	0.45585	0.02379	0.1464	0.13199	0.42857	0.54167	0.45006	0.43631	0.0117	0.5049	-0.0634	0.0143	-0.13	-0.0461	0.0304	0.46067	0.09	0.5144	0.43132	0.12606	0.55242	0.1413	0.5685	0.58023	0.7139	0.97677	0.6804	-0.3409	-0.0803	-0.018427	-0.039846	-0.032673	0.031349	0.0947	-0.0582	0.0109	0.4366	-0.64388	-0.21547	0.3686	0.089107	0.4275	-0.010978	-0.0364	-0.078658	0.025871	-0.0491	-0.0342	-0.011123	-0.0058	0.38517	0.4453	0.0814	-0.097819	0.4607	0.42154	-0.06763	-0.1182	-0.0575	-0.04081	0.2539	0.29306	0.3819	-0.068374	-0.0901	-0.13114	0.1166	-0.14527	0.103	-0.1621	-0.0915	0.29811	-0.031482	-0.058012	0.43	-0.0275	-0.031817	-0.046697	-0.15208	0.40859	0.31877	0.39361	-0.049305	0.184	0.085622	0.0385	0.3048	0.15838	-0.0343	-0.0531	0.31443	-0.10216	0.3718	0.3747	-0.10818	-0.10036	-0.24053	0.24787	-0.1789	-0.0612	0.41679	0.1837	0.104	0.0239	-0.11889	-0.050698	-0.03319	-0.1075	0.43331	0.1927	-0.0003	-0.0302	0.47546	-0.0091	0.0395	0.4675	-0.0426	0.055	0.48052	-0.075089	0.3159	0.2769	-0.0452	0.3201	0.1346	-0.093227	-0.1833	-0.0588	0.15426	-0.1206	0.3153	0.49742	0.0704	0.41612	-0.083783	0.10329	-0.056282	0.3328	
Broad_standard_080606	Amplification Peak 11 - log2 ratios	20q13.33	chr20:61629913-61684982(probes 1544373:1544383)	chr20:61629913-61657677(probes 1544373:1544375)	chr20:1-62386511(probes 1504474:1544659)          	1.0643e-13	  1.0643e-13	broad	Actual Log2 Ratio Given	0.5087	0.4467	0.63151	-0.015593	-0.0238	-0.0065344	0.4383	-0.0091443	0.23108	0.035134	0.4161	0.05288	-0.20078	0.2004	-0.028901	0.038382	0.2136	0.43105	0.3421	0.054	0.008889	0.36651	-0.018979	0.419	-0.026648	-0.062044	0.1004	-0.10505	0.026891	-0.058664	0.052161	0.34095	-0.10501	0.15346	-0.10151	-0.052143	0.42866	0.4966	0.42078	0.2788	0.41081	-0.1756	0.022797	-0.0472	-0.0639	-0.0207	0.54893	0.1052	0.463	0.062523	1.2731	0.21552	-0.07005	0.5017	0.58806	0.584	0.67825	0.29393	0.19737	-0.089796	-0.007127	-0.082046	-0.073404	0.1946	-0.0451	-0.048884	0.078995	0.3805	-0.018875	-0.012966	0.3656	0.03312	0.3441	-0.019178	-0.0396	-0.085858	0.0846	-0.0969	0.0166	-0.014823	0.2881	-0.06632	-0.0082	0.025	-0.07299	-0.7977	0.4413	-0.024595	-0.1193	-0.0262	0.046273	0.396	0.40026	0.4302	-0.040538	-0.0742	-0.05617	0.23	0.15122	0.18177	-0.0292	0.50559	-0.04409	0.020118	-0.037067	-0.053925	0.0244	-0.066832	0.028969	0.4515	-0.1345	-0.087064	0.4273	0.22252	0.1113	0.37422	0.0232	0.3769	0.34148	-0.0709	-0.0595	0.30383	0.083	0.354	-0.0029026	-0.056583	-0.034998	-0.24265	0.20545	-0.0471	0.2415	0.44949	0.1844	-0.0625	0.056208	0.066881	0.37889	-0.056425	-0.904	0.4748	0.172	-0.012	-0.0218	-0.0182	0.0171	-0.2743	0.4712	-0.014	0.0321	-0.0131	0.34211	0.18875	-0.033	-0.024424	-0.0165	0.098699	-0.0027951	-0.0189	0.42007	0.029058	-0.0954	-0.16002	0.51212	0.3362	0.51105	-0.025938	-0.06931	-0.031982	0.4016	
Broad_standard_080606	Deletion Peak 1 - log2 ratios	1p36.23 	chr1:7736227-8140063(probes 2661:2908)                	chr1:7869861-7923474(probes 2764:2793)                	chr1:7673002-8285834(probes 2633:2993)            	0.012341	    0.012342	focal	Actual Log2 Ratio Given	-0.7198	-0.64095	0.0075212	-0.0738	-0.013543	0.0623	-0.0535	0.5934	0.36038	0.0686	-0.0392	0.028952	0.17212	0.18152	0.027769	0.062082	0.16	-0.03535	-0.2822	0.1342	-0.043	0.32011	-0.64549	0.0835	0.0325	-0.014486	0.0756	-0.038444	0.0407	-0.0227	0.099923	-0.0033476	0.35939	0.0087187	0.018488	-0.4317	-0.85791	-0.0167	-0.035586	-0.4448	0.047	-0.1048	-0.16392	-0.5173	-0.5832	-0.068404	0.29048	-0.15929	-0.33534	0.088923	0.076161	0.11682	0.050234	0.1221	0.25223	0.2634	0.49996	-0.0396	-0.049	-0.064	0.008573	-0.025646	-0.043204	0.0259	-0.575	-0.1305	0.0593	0.013996	0.22182	0.25327	0.0109	-0.64928	0.0383	-0.032478	-0.0746	-0.077058	0.0094	-0.0436	0.1166	-0.010523	-0.0151	-0.076536	-0.0258	-0.1353	-0.0531	0.0191	-0.0477	-0.41783	-0.084863	-0.8881	0.01609	-0.1258	-0.070745	-0.0637	-0.048844	-0.0588	0.017134	-0.0305	0.0064862	-0.093113	-0.0984	-0.46223	-0.066375	-0.10348	-0.056218	-0.1753	-0.1113	-0.0456	-0.094397	-0.1023	-0.0496	-0.5828	-0.11	-0.068305	-0.564	-0.080878	0.0372	0.3353	0.17418	-0.0992	-0.6193	0.31703	0.024	-0.73097	-0.026403	-0.039983	-0.092034	0.26857	-0.046627	-0.0934	-0.0725	0.0020867	-0.6272	-0.0988	0.0272	0.075213	-0.030444	-0.04319	-0.0927	-0.8486	-0.099962	-0.0185	-0.0279	-0.015	0.004485	0.026714	-0.9478	-0.018	0.1474	0.0024023	-0.016789	0.011454	-0.0107	-0.7245	-0.1843	0.3166	-0.1898	-0.6249	-0.0444	-1.1288	-0.0672	-0.1228	-0.93468	-0.42963	-0.062176	-0.038638	-0.22441	-0.073582	-1.4856	
Broad_standard_080606	Deletion Peak 2 - log2 ratios	6q24.1  	chr6:138803101-140224037(probes 682638:683573)    	chr6:140211168-140224037(probes 683562:683573)    	chr6:107349600-170745840(probes 664295:703355)	4.1103e-06	  4.1103e-06	broad	Actual Log2 Ratio Given	0.0065	-0.655	-0.64896	0.0099	-0.1252	-0.17813	-0.0352	-0.9324	-0.1586	0.0357	-0.7267	0.015852	0.05562	0.099423	-0.33295	-0.012118	0.0193	0.041167	-0.0076651	0.0051	0.0532	-0.012325	0.044321	-0.010523	-0.62357	0.010414	-0.2087	0.013684	-0.024629	0.0076411	-0.029477	-0.61875	-0.0028102	-0.03637	-0.057812	-0.0006	-0.019714	0.0013	-0.0048856	-0.0056	0.0014	0.047889	0.0267	-0.3801	-0.5488	0.0072	-0.19086	-0.1284	-0.5899	-0.0067082	-0.030415	-0.0070845	-0.023849	-0.6716	-0.074371	-0.063	-1.4649	-0.0206	0.044936	0.01155	-0.066627	0.037554	-0.8783	0.03732	0.0153	0.031	-0.1718	0	0.015571	0.17743	-0.0199	0.13107	-0.013759	0.011422	-0.0632	-0.76494	0.0247	-0.1028	-0.046862	-0.71982	-0.0029	-0.86704	0	0.0742	0.0178	-0.85989	-0.80147	-0.02033	-0.6529	0.011601	0.02899	0.0206	0.00045514	0.0156	-0.012348	0.0146	0.076534	-0.0073	0.045588	-0.1136	-0.76432	0.2506	0.0031253	-0.15718	0.0046476	-0.1065	0.1247	-0.6328	-0.0088073	0.0028549	-0.0043198	0.0023723	-0.8464	-0.34801	-0.102	-0.59858	-0.019873	-0.22284	0.035184	-0.52054	0.0022	0.20243	0.25195	0.011913	-0.50616	-0.036042	-0.26289	0.0099223	-0.010571	0.0125	0.30256	-0.0062778	-0.49136	-0.1291	-0.0313	-0.079234	-0.042161	-0.033259	-0.814	-0.0133	0.0158	-0.0143	-0.73475	0.0031089	-0.026275	0.0265	0.0003	-0.39306	-0.51507	-0.5939	0.0073039	-0.0065463	0.0031766	-0.0169	-0.82929	-0.012876	-0.83582	-0.58103	-0.0059	-0.098724	0	-0.0033315	-0.014441	-0.014152	-0.063777	0.013162	-0.040622	0.018318	-0.7089	
Broad_standard_080606	Deletion Peak 3 - log2 ratios	9p21.3  	chr9:21981924-21999959(probes 892268:892296)        	chr9:21995331-21999959(probes 892296:892296)        	chr9:1-70234709(probes 875276:902673)             	7.0444e-213	 7.0445e-213	both	Actual Log2 Ratio Given	-1.5073	-1.5468	-1.5082	-1.5239	-1.0006	0.0010258	-1.0409	-1.5356	-0.21942	-0.82917	-1.5039	-0.012348	-1.5212	-0.76141	-1.0573	-0.54702	-0.0238	-1.4808	0.3212	-1.5511	0.0641	0.045413	-0.0019789	-0.0044002	-1.5795	-0.002797	0.0577	-1.3041	-1.5089	-0.077025	-0.10128	-1.5262	-1.091	-0.0088	-0.089167	-1.3334	-1.4971	-1.4892	-1.475	-1.1776	-1.4951	-1.4835	0.0177	0.0649	-1.2933	-0.2678	-0.86661	0.10338	-1.5149	-0.59628	-1.1882	-1.51	-0.0027238	-1.5097	-0.086971	-1.5279	-0.059327	-1.024	0.052997	-1.5005	0.043373	0.018954	-1.5309	-0.015482	-1.3367	0.0188	-1.3625	-1.4324	-0.036533	0.023634	-0.5651	0.071462	-0.5234	-1.5155	-1.513	-1.5378	-1.1126	0.0095	-1.1892	-0.007823	-0.051128	-0.8263	-1.5264	-0.72465	0.50889	-1.5542	-1.5059	-1.5286	-1.5028	-0.00070874	0.038873	-1.4721	-1.5215	-1.5048	0.0060562	-1.518	0.10723	-0.57971	0.068421	-0.5037	-0.19683	0.29367	-1.4486	0.1549	-0.14992	-0.4136	0.007233	-0.62735	-0.7829	-0.8264	-0.0013	-1.2587	-1.4927	-1.4047	-1.1756	-0.47838	-0.84659	0.0173	-1.112	-1.5253	-1.535	-0.48897	-1.5362	-1.5371	-1.5625	-0.075383	-0.96423	-1.498	-0.04395	-1.5152	-0.5158	-1.5025	-1.5377	-1.5203	-1.0132	0.075913	0.08038	-1.3998	-1.5861	-1.4522	-0.47012	0.006	-1.5448	0.2338	-0.97	0.0443	-1.4757	-0.8531	-0.50125	-1.5205	0.039731	-0.51355	-0.9575	-1.5781	-1.0453	0.253	-0.78118	-0.5552	-1.4574	-1.4727	-1.4771	-1.5112	-1.5183	-1.1581	0.0062235	-0.017752	-0.27409	-1.5235	-1.4856	
Broad_standard_080606	Deletion Peak 4 - log2 ratios	10p13   	chr10:12619611-12624214(probes 957366:957377)      	chr10:12621793-12622789(probes 957372:957374)      	chr10:1-135056862(probes 948239:1031626)         	4.559e-79	  5.6183e-06	broad	Actual Log2 Ratio Given	-0.79508	-0.66639	-0.97938	-0.7075	-0.46919	-0.72287	-1.0485	-0.97378	-0.55446	-0.04	-1.4548	-0.99139	-0.60974	-0.70508	-0.36315	-0.4898	-0.0456	-0.71545	-0.4438	-0.90417	-0.5296	-0.52759	-0.67578	-0.8113	-0.6155	0.0053144	-0.2209	-0.13444	-0.68323	-0.049211	-0.19972	-0.62085	-0.49301	-0.1753	-0.11413	-0.538	-0.85391	-0.0325	-0.66769	-0.4964	-0.73527	-0.613	-0.17079	-0.45103	-0.5471	-0.2123	-0.10436	0.024998	-0.5074	-0.51191	-0.35914	-0.50807	0.38842	-0.6046	-0.47297	-0.41404	0.22227	-0.2575	-1.118	-0.93641	-0.79645	-1.4953	-0.939	-0.24736	-0.55762	-0.9312	-0.4983	0.018151	-0.73528	-0.64502	-0.5838	-0.88147	-0.5456	-0.65178	-1.2869	-0.80898	-0.55151	-0.0134	-0.0381	-0.82292	-0.4855	-0.040975	-0.84319	-0.1076	0.6703	0.4619	-0.80813	-0.36851	-0.46119	-0.0208	-0.30061	-0.77264	-0.69214	-0.8513	-0.82336	-0.0182	-0.60556	-0.0956	-0.34058	-0.3093	-0.0256	1.1509	-1.3668	-0.14128	-0.19342	0.23863	-0.4786	-1.5507	-0.3602	-0.054174	-0.8468	-0.55966	-0.8994	-0.36261	-0.2132	-0.63762	0.4661	-0.2428	-0.87522	-0.6415	-0.6138	-0.55582	-0.6481	-0.7497	-0.0096026	-0.056447	-0.38933	-0.69593	-0.31999	-0.76039	-0.0269	-0.73281	-0.58172	-0.44683	0.0153	-0.31879	-0.024344	-0.66829	0.4436	-0.0582	-0.033274	-0.0195	-0.7354	-0.0155	-0.44278	-0.73584	-0.0513	-0.3972	-0.44797	-0.7892	-0.55619	-0.51445	-0.4001	-0.79199	-0.0379	-0.299	0.010305	-0.65596	-0.0453	-0.54274	-0.2205	-0.8828	-0.93405	-0.4788	-0.96428	-0.41204	-0.40051	-0.86632	-0.6352	
Broad_standard_080606	Deletion Peak 5 - log2 ratios	10q26.3 	chr10:131005136-132460161(probes 1029489:1030637)	chr10:131005136-131016491(probes 1029489:1029499)	chr10:1-135056862(probes 948239:1031626)         	1.0836e-99	  1.0836e-99	broad	Actual Log2 Ratio Given	-0.77436	-0.6353	-0.96558	-0.71713	-0.47081	-0.756	-1.071	-0.95871	-0.5281	-0.31973	-0.78956	-1.0439	-0.65315	-0.46369	-0.34073	-0.41462	-0.0333	-0.71269	-0.4326	-0.8728	-0.5401	-0.47339	-0.65858	-0.81448	-0.62239	-0.45079	-0.2541	-0.64394	-0.70654	-0.16555	-0.24888	-0.67519	-0.56658	-0.16229	-0.24427	-0.62824	-0.92661	-0.97464	-1.0096	-0.58037	-0.79541	-0.72242	-0.21835	-0.471	-0.63072	-0.21738	-1.4975	-0.40128	-0.4764	-0.50208	-0.38255	-0.4534	-0.019351	-0.5532	-0.35879	-0.46647	0.063291	-0.2113	-0.5172	-0.991	-0.82841	-0.652	-0.88694	-0.34511	-0.5559	-0.9975	-0.5306	-0.5601	-0.79208	-0.76837	-0.483	-0.88074	-0.5216	-0.68288	-0.8706	-0.88547	-0.4243	-0.047574	-0.043997	-0.82602	-0.4691	-0.9229	-0.84085	-0.6226	-0.50216	-0.80476	-0.85584	0.02277	-0.4849	-0.0586	-0.34413	-0.82676	-0.72804	-0.92635	-0.84702	-0.019617	-0.65202	-0.0974	-0.3791	-0.34605	-0.5066	-0.11911	-0.69256	-0.84369	-0.20324	-0.0668	-0.5182	-0.69818	-0.3577	-0.96574	-0.90532	-0.58727	-0.96601	-0.43181	-0.2694	-0.70984	0.0083	-0.2797	-0.91612	-0.67163	-0.5796	-0.45487	-0.65379	-0.67425	-0.70025	-0.0085834	-0.40421	-0.69393	-0.29813	-0.7569	-0.0035457	-0.70271	-0.5315	-0.3689	0.0618	-0.28336	-0.7311	-0.03099	-0.8403	-0.82534	-0.031	0.0005	-0.6693	-0.338	-0.38904	-0.684	-0.9361	-0.3522	-0.3575	-0.7272	-0.60179	-0.49225	-0.3707	-0.699	-0.9313	-0.2955	-0.082295	-0.6046	9.9998e-05	-0.59136	-0.2046	-0.851	-0.90528	-0.4181	-0.95071	-0.37284	-0.4742	-0.85631	-0.6159	
Broad_standard_080606	Deletion Peak 6 - log2 ratios	11p15.5 	chr11:1-357138(probes 1031628:1031711)                 	chr11:303924-356434(probes 1031697:1031709)            	chr11:1-1615883(probes 1031628:1032035)           	0.041593	    0.041593	focal	Actual Log2 Ratio Given	0.0839	0.071207	0.031021	-0.0182	0.0335	-0.0346	-0.13578	0.0548	0.0035762	-0.7786	-0.0583	-0.16745	0.07222	0.0011274	-0.15143	0.079782	0.0564	-0.00885	0.0155	0.0549	-0.1287	0.071513	0.021421	0.0309	0.0157	-0.85739	0.0714	-0.030824	0.0287	-0.0372	-0.67018	-0.021648	-0.23161	0.0239	-0.078712	-0.0228	-0.023814	-0.0195	-0.10359	-0.0581	-0.0133	-0.1159	-0.0493	-0.4301	-0.0224	-0.0162	0.42023	0.0593	0.1088	0.0072228	0.27196	0.23302	-0.3158	0.168	0.35593	0.3447	0.80257	0.4095	-0.0937	-0.0341	-0.35203	-0.41271	0.031296	-0.6181	0.0124	-0.123	0.0093	-0.0243	-0.026275	-0.25987	0.0226	-0.022193	0.0988	-0.027178	-0.0633	-0.12086	-0.0289	0.0204	-0.1427	0.004977	-0.5491	-0.0706	0.4685	-0.74367	-0.0351	-0.7388	-0.0217	-0.47113	-0.1107	-0.0168	-0.07881	-0.0999	-0.023745	-0.0642	-0.041344	-0.7033	-0.18987	0.3201	-0.18805	-0.21467	-0.6175	-0.44	-0.04929	-0.42568	-0.049718	-0.028792	-0.1751	-0.6592	-0.008197	-0.2003	-0.061	-0.058134	-0.0599	-0.41281	-0.1782	-0.061478	-0.78903	-0.26006	-0.26182	-0.1591	-0.038	-0.26889	-0.6279	-0.0483	0.029697	-0.057683	-0.055234	-0.13643	-0.054227	-0.12951	-0.0762	-0.0094133	-0.045	-0.372	0.0024	-0.23929	-0.11385	-0.02459	-0.8516	-0.0393	-0.075	-0.0261	-0.0317	-0.43966	-0.0154	-0.6659	-0.064806	-0.0352	-0.018266	-0.0277	-0.047789	0.0028537	-0.142	0.0101	-0.1102	-0.2121	-0.014395	-0.0996	-0.0594	-0.43114	-0.0726	-0.0084	-0.050084	0.0082	-0.22218	-0.069838	-0.69051	-0.26298	-0.0088123	
Broad_standard_080606	Deletion Peak 7 - log2 ratios	13q14.3 	chr13:49304288-49343738(probes 1212535:1212552)    	chr13:49304288-49343738(probes 1212535:1212552)    	chr13:1-113964073(probes 1191424:1252612)     	1.378e-20	   1.378e-20	broad	Actual Log2 Ratio Given	-0.82123	-0.043141	-0.015279	0.012384	-0.2724	-0.098108	-0.005489	0.01865	-0.12082	-0.7803	0.0048629	-0.0054475	-0.85558	0	-0.35693	-0.25902	0.0145	-0.02165	-0.4542	-0.023653	-0.55364	-0.52209	-0.017689	-0.003	-0.3477	0.039647	-0.1963	-0.45182	-0.10516	-0.0073	-0.65268	-0.57745	-0.0042997	-0.182	0	-0.4891	0.029548	0.0287	0.0053055	0.0015756	0.0012682	-0.6454	-0.0294	-0.3868	-0.4928	-0.0086679	-0.10367	-0.6277	-0.2735	0.0044228	-0.042924	-0.54408	-0.0165	-0.0057	0.0087365	-0.62741	0.0090949	-0.0716	-0.38091	-0.1084	0	-0.0063461	0	-0.0597	-0.0038099	0.032278	-0.069354	-0.016556	-0.68438	-0.70014	0.0041	-0.51571	-0.0036	-0.6041	0.0222	-0.74604	-1.3469	-0.0072226	-0.4964	0.0040014	-0.4479	-0.84499	0.0068296	-0.2132	-0.7616	-0.0242	0.020662	-0.73153	0.038668	-0.8193	-0.23356	0.031873	0.0092551	-0.0049539	0.028411	-0.0057643	-0.50607	-0.319	-0.31865	0.0118	0.0269	-0.4006	0.02151	-0.0051038	-0.68592	-0.0838	-0.41956	-0.6242	0.016903	0.0874	-0.5232	-0.48453	0.0213	0.046895	-0.3607	-0.0072139	-0.81554	-0.19742	0.045836	-0.0721	-0.2871	-0.24599	-0.2848	-0.8141	0.028897	0.0054876	-0.41074	0.0024708	0.062773	0	-0.468	-0.00031331	-0.6148	0.1733	-0.0074	-0.26937	-0.30973	-0.85469	-0.80523	-0.0060527	-0.0095	0.023635	0.0173	-0.50534	0.0293	-1.6737	-0.019859	-0.3662	-0.49373	-0.771	-0.65619	-0.0045463	-0.4158	-0.69025	-0.834	-0.024401	0.091605	-0.6365	0.007	-0.17624	-0.0003	0.009	-0.0011841	-0.49341	-0.94448	-0.29012	-0.077509	-0.77978	-0.0081211	
Broad_standard_080606	Deletion Peak 8 - log2 ratios	14q32.31	chr14:100455109-100527548(probes 1298692:1298728)	chr14:100455109-100491485(probes 1298692:1298705)	chr14:1-103049295(probes 1252614:1299942)     	1.13e-08	    1.13e-08	broad	Actual Log2 Ratio Given	0.0525	-0.3651	0.017821	0.024606	0.01084	-0.6622	0.035815	0.0229	-0.037186	-0.20966	-0.0284	0.00055245	-0.7676	0.0069227	-0.32623	0.042282	0.0654	0	0.3484	-0.8112	0.0619	0.085713	0.0053589	0.026815	-0.1252	-0.33879	-0.231	-0.55709	0.0064052	-0.049024	-0.39488	0.0053803	-0.0085102	-0.1063	-0.10878	0.0101	-0.023814	-0.026927	-0.064487	-0.015	-0.0048451	-0.0735	-0.0297	0.0168	-0.59268	-0.024	0.23751	0.11116	0.11372	0.074823	0.061161	0.025915	0.011062	0.0272	0.16483	0.1486	-0.38733	0.0779	-0.028684	-0.051721	-0.67713	-0.03785	-0.016204	-0.0958	-0.0176	-0.027	-0.4847	0.0077	-0.0010752	0.039771	-0.004	0.026599	0.07362	-0.019278	-0.82305	-0.87866	-0.4002	-0.68587	-0.024604	-0.022623	0.0071	-0.9619	-0.021452	-0.6415	-0.82784	-0.0316	-0.0207	-0.83487	-0.0522	-0.0271	-0.00099349	-0.094767	-0.073245	-0.056816	-0.020896	-0.22202	-0.012866	-0.0464	-0.39368	-0.070683	-0.82789	-0.4272	-0.053457	-0.7251	-0.22801	-0.0138	0.093011	-0.65665	-0.010303	-0.094577	0.0941	-0.051085	-0.048037	-0.3975	-0.071203	-0.049778	0.0094	-0.24304	-0.14952	-0.68402	-0.6027	-0.68167	-0.71387	0.20274	0.0085974	-0.019568	-0.27783	-0.053929	-0.014627	-0.7923	-0.0577	0.010387	-0.059	-0.7664	0.019	-0.30409	-0.058364	-0.03939	-0.8288	-0.041907	-0.016626	-0.0057	-0.0009	-0.2185	-0.3517	0.0127	-0.08964	-0.3972	-0.8951	-0.0185	-0.018872	0.015954	-0.0411	-0.7468	-1.1832	-0.2783	-0.82308	-0.66251	0.4094	0.11922	-0.033	-0.0186	-0.013384	-0.0086	-0.10006	-0.047238	-0.55261	-0.017482	-0.0232	
Broad_standard_080606	Deletion Peak 9 - log2 ratios	22q13.31	chr22:44158151-44579710(probes 1578083:1578370)    	chr22:44555126-44558958(probes 1578358:1578359)    	chr22:1-49578523(probes 1566761:1578578)       	2.8254e-09	  2.8255e-09	broad	Actual Log2 Ratio Given	-0.71748	0.0383	-0.94539	-0.0057	-0.0042	0.070806	-0.1302	0.033642	0.23134	-0.2985	-0.0599	0.0094525	-0.69194	-0.71428	-0.27003	0.086682	0.0608	-0.73354	-1.0084	-0.7537	-0.5568	0.14231	-0.64718	0.054599	0.0116	-0.32179	0.10724	-0.011148	-0.63939	-0.0139	0.058223	-0.031948	-0.04581	-0.0981	-0.20205	-0.0075039	-0.016914	-0.0102	-0.071286	-0.063401	-0.0348	-0.0886	-0.19027	-0.0588	-0.60154	-0.0214	-0.24528	-0.52511	0.2111	0.079423	0.15584	0.14175	0.047561	0.1362	0.24186	-0.4018	0.53977	0.26156	-0.53287	-0.26217	-0.019627	-0.044263	-0.065274	-0.030032	-0.0657	-0.073236	0.027266	-0.0021	-0.74918	-0.45188	0.003	-0.89213	0.05214	-0.68393	-0.023524	-0.068391	-0.012511	-0.1767	-0.0449	-0.0089109	-0.5381	-0.97768	-0.011507	-0.193	-0.0788	-0.002653	-0.0483	0.0048186	-0.7406	-0.07354	-0.022119	-0.11921	-0.075345	-0.3518	-0.047058	-0.064811	-0.068984	-0.1316	0.0069022	-0.17467	-0.12178	0.2724	-0.051496	0.022118	-0.059084	-0.10488	-0.1919	-0.65803	-0.018397	-0.13749	-0.0782	-0.042528	-0.101	-0.42421	-0.093756	-0.081317	0.0074	-0.30507	-0.28203	0.0058	-0.0306	0.12123	-0.58663	-0.74514	-0.284	-0.17667	-0.46683	-0.16574	-0.026522	-0.11208	-0.18631	-0.024013	-0.6352	0.24551	-0.4028	-0.30349	-0.94504	-0.063561	-0.070819	-0.075667	-0.060415	-0.0226	-0.0509	-0.0348	-0.4245	0.0215	-0.0888	-0.41391	0.0395	-0.8253	-0.020289	0.010154	-0.025623	-0.7596	-0.2143	0.040799	-0.045295	-0.6788	-0.7498	-0.017966	-0.0591	-0.1653	-0.94171	-0.5031	-0.29302	-0.36686	0.022746	-0.075256	-0.6338	
Broad_standard_080606	Amplification Peak  4- Contributing Broad Events	7p	Amplitude values represent median within significant region.	Broad Event Corresponding to Amplification Peak 4	chr7:1-158620555(probes 703357:791619)           	3.2439e-73	   0.0002867	both	0: t<0.1699; 1: t>0.1699	0	1	1	1	1	1	1	1	1	0	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	0	1	1	1	0	0	0	1	1	0	1	1	1	1	1	1	1	0	1	0	1	1	0	0	1	1	1	0	0	1	1	0	1	1	1	0	1	1	0	1	1	1	0	1	1	1	1	1	1	1	0	1	0	1	1	1	0	1	0	0	0	1	0	1	0	1	1	1	1	1	0	1	1	1	1	0	0	1	1	1	1	1	1	1	0	1	1	1	1	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	1	0	1	1	1	1	1	1	1	0	1	1	0	1	0	1	0	1	0	1	1	1	1	1	1	0	1	0	0	1	1	0	1	1	1	1	1	1	1	1	
Broad_standard_080606	Amplification Peak  5- Contributing Broad Events	7p	Amplitude values represent median within significant region.	Broad Event Corresponding to Amplification Peak 5	chr7:1-158620555(probes 703357:791619)           	3.8301e-229	 3.8301e-229	both	0: t<0.1699; 1: t>0.1699	0	1	1	1	1	1	1	1	1	0	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	0	1	1	1	0	0	0	1	1	0	1	1	1	1	1	1	1	0	1	0	1	1	0	0	1	1	1	0	0	1	1	0	1	1	1	0	1	1	0	1	1	1	0	1	1	1	1	1	1	1	0	1	0	1	1	1	0	1	0	0	0	1	0	1	0	1	1	1	1	1	0	1	1	1	1	0	0	1	1	1	1	1	1	1	0	1	1	1	1	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	1	0	1	1	1	1	1	1	1	0	1	1	0	1	0	1	0	1	0	1	1	1	1	1	1	0	1	0	0	1	1	0	1	1	1	1	1	1	1	1	
Broad_standard_080606	Amplification Peak  6- Contributing Broad Events	7q	Amplitude values represent median within significant region.	Broad Event Corresponding to Amplification Peak 6	chr7:1-158620555(probes 703357:791619)           	1.0278e-86	   4.163e-12	both	0: t<0.1699; 1: t>0.1699	0	1	1	1	1	1	1	1	1	0	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	0	1	1	1	0	0	0	1	1	0	1	1	1	1	1	1	1	0	1	0	1	1	0	0	1	1	1	0	0	1	1	0	1	1	1	0	1	1	0	1	1	1	0	1	1	1	1	1	1	1	0	1	0	1	1	1	0	1	0	0	0	1	0	1	0	1	1	1	1	1	0	1	1	1	1	0	0	1	1	1	1	1	1	1	0	1	1	1	1	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	1	0	1	1	1	1	1	1	1	0	1	1	0	1	0	1	0	1	0	1	1	1	1	1	1	0	1	0	0	1	1	0	1	1	1	1	1	1	1	1	
Broad_standard_080606	Amplification Peak  7- Contributing Broad Events	7q	Amplitude values represent median within significant region.	Broad Event Corresponding to Amplification Peak 7	chr7:1-158620555(probes 703357:791619)           	1.0766e-68	    0.017135	broad	0: t<0.1699; 1: t>0.1699	0	1	1	1	1	1	1	1	1	0	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	0	1	1	1	0	0	0	1	1	0	1	1	1	1	1	1	1	0	1	0	1	1	0	0	1	1	1	0	0	1	1	0	1	1	1	0	1	1	0	1	1	1	0	1	1	1	1	1	1	1	0	1	0	1	1	1	0	1	0	0	0	1	0	1	0	1	1	1	1	1	0	1	1	1	1	0	0	1	1	1	1	1	1	1	0	1	1	1	1	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	1	0	1	1	1	1	1	1	1	0	1	1	0	1	0	1	0	1	0	1	1	1	1	1	1	0	1	0	0	1	1	0	1	1	1	1	1	1	1	1	
Broad_standard_080606	Amplification Peak  10- Contributing Broad Events	19p	Amplitude values represent median within significant region.	Broad Event Corresponding to Amplification Peak 10	chr19:1-63558485(probes 1478760:1504472)          	2.9482e-18	  2.9482e-18	broad	0: t<0.1699; 1: t>0.1699	1	0	1	1	1	0	0	0	1	0	1	1	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	1	0	0	1	0	0	0	1	1	1	1	0	1	0	0	0	0	0	0	0	1	1	0	1	0	1	1	1	1	1	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	1	0	1	0	0	1	0	0	0	1	0	1	1	0	0	0	1	0	0	1	1	0	0	0	1	0	0	1	1	1	0	0	0	0	1	0	0	1	0	1	1	0	0	0	0	0	0	1	0	1	0	0	1	0	1	0	0	
Broad_standard_080606	Amplification Peak  11- Contributing Broad Events	20q	Amplitude values represent median within significant region.	Broad Event Corresponding to Amplification Peak 11	chr20:1-62386511(probes 1504474:1544659)          	1.0643e-13	  1.0643e-13	broad	0: t<0.1699; 1: t>0.1699	1	1	1	0	0	0	1	0	1	0	1	0	0	0	0	0	1	1	1	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	1	1	1	1	1	0	0	0	0	0	1	0	1	0	0	0	0	1	1	1	1	0	1	0	0	0	0	1	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	1	1	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	1	0	1	1	0	0	1	1	1	0	0	0	0	1	0	1	1	1	0	0	0	1	0	0	1	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	1	1	1	0	1	0	1	
Broad_standard_080606	Deletion Peak  2- Contributing Broad Events	6q	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 2	chr6:107349600-170745840(probes 664295:703355)	4.1103e-06	  4.1103e-06	broad	0: t>-0.1926; 1: t<-0.1926	0	0	1	0	0	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	1	0	1	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	1	0	0	0	0	1	1	1	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	
Broad_standard_080606	Deletion Peak  3- Contributing Broad Events	9p	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 3	chr9:1-70234709(probes 875276:902673)             	7.0444e-213	 7.0445e-213	both	0: t>-0.1926; 1: t<-0.1926	1	1	1	1	0	0	1	1	1	1	1	0	1	1	1	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	0	1	0	0	0	1	0	1	0	0	1	1	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	1	0	1	0	1	1	0	0	1	1	0	0	0	0	1	0	0	1	0	0	0	0	1	0	1	0	1	0	1	1	1	1	1	1	0	0	0	0	1	0	1	1	0	0	1	0	1	1	0	1	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	1	0	0	1	0	1	1	0	1	1	1	1	0	0	1	1	0	0	1	1	1	
Broad_standard_080606	Deletion Peak  4- Contributing Broad Events	10p	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 4	chr10:1-135056862(probes 948239:1031626)         	4.559e-79	  5.6183e-06	broad	0: t>-0.1926; 1: t<-0.1926	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	0	1	1	1	0	0	1	1	0	1	1	1	1	0	1	1	1	1	1	1	1	1	1	0	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	1	1	1	1	1	1	0	1	0	1	0	1	1	1	1	1	0	1	0	1	1	0	0	1	1	0	0	1	1	1	1	1	1	1	1	0	1	0	1	1	1	1	1	1	1	1	0	1	1	1	1	0	1	1	1	0	1	1	0	0	1	0	0	1	0	1	1	1	1	1	1	1	1	1	1	0	1	0	1	0	1	1	1	1	1	1	1	1	1	1	
Broad_standard_080606	Deletion Peak  5- Contributing Broad Events	10q	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 5	chr10:1-135056862(probes 948239:1031626)         	1.0836e-99	  1.0836e-99	broad	0: t>-0.1926; 1: t<-0.1926	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	0	1	1	1	0	0	1	1	0	1	1	1	1	0	1	1	1	1	1	1	1	1	1	0	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	1	1	1	1	1	1	0	1	0	1	0	1	1	1	1	1	0	1	0	1	1	0	0	1	1	0	0	1	1	1	1	1	1	1	1	0	1	0	1	1	1	1	1	1	1	1	0	1	1	1	1	0	1	1	1	0	1	1	0	0	1	0	0	1	0	1	1	1	1	1	1	1	1	1	1	0	1	0	1	0	1	1	1	1	1	1	1	1	1	1	
Broad_standard_080606	Deletion Peak  7- Contributing Broad Events	13q	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 7	chr13:1-113964073(probes 1191424:1252612)     	1.378e-20	   1.378e-20	broad	0: t>-0.1926; 1: t<-0.1926	1	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	0	0	1	0	1	1	1	0	1	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	1	1	0	0	0	1	1	0	1	1	0	0	0	0	0	1	0	0	0	0	0	1	1	1	0	0	1	0	0	0	0	1	1	0	0	0	1	0	0	1	0	0	1	0	0	1	1	1	0	0	0	1	0	0	0	1	0	1	0	0	1	1	0	1	0	0	0	0	0	0	1	0	1	1	0	1	0	0	1	0	0	0	1	0	0	0	0	0	1	0	1	0	1	0	
Broad_standard_080606	Deletion Peak  8- Contributing Broad Events	14q	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 8	chr14:1-103049295(probes 1252614:1299942)     	1.13e-08	    1.13e-08	broad	0: t>-0.1926; 1: t<-0.1926	0	1	0	0	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	1	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	1	1	0	0	0	1	0	1	1	0	0	1	0	0	0	0	0	0	0	1	0	0	1	0	1	1	0	1	0	0	0	1	0	0	0	0	0	1	0	0	0	1	0	1	1	0	1	0	0	0	1	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	1	1	0	0	1	1	0	0	0	0	1	1	1	1	1	1	0	0	0	0	0	0	0	1	0	0	
Broad_standard_080606	Deletion Peak  9- Contributing Broad Events	22q	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 9	chr22:1-49578523(probes 1566761:1578578)       	2.8254e-09	  2.8255e-09	broad	0: t>-0.1926; 1: t<-0.1926	1	0	1	0	0	0	0	0	0	1	0	0	1	1	1	0	0	0	0	1	1	0	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	1	1	1	1	0	0	1	
Harvard_focal_080606	Amplification Peak 1	1p31.1  	chr1:71298556-71322899(probes 5734:5737)      	chr1:71298556-71322899(probes 5734:5737)      	chr1:71298556-71322899(probes 5734:5737)      	0.086361	    0.086361	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 2	1q32.1  	chr1:202299299-203008525(probes 13579:13648)	chr1:202399046-202814266(probes 13591:13632)	chr1:201327370-203776979(probes 13487:13725)	6.5493e-14	  6.5493e-14	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 3	1q44    	chr1:241494131-242812046(probes 16505:16621)	chr1:242184885-242812046(probes 16568:16621)	chr1:241494131-242812046(probes 16505:16621)	0.016723	    0.016723	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 4	2p24.3  	chr2:11979076-20827615(probes 17893:18362)    	chr2:14353787-17013162(probes 18004:18151)    	chr2:11979076-21008079(probes 17893:18372)    	0.01438	     0.01438	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	
Harvard_focal_080606	Amplification Peak 5	3q26.33 	chr3:182340789-183245653(probes 46707:46750)	chr3:182612379-182775400(probes 46720:46724)	chr3:177640393-185071295(probes 46394:46892)	9.4711e-05	  9.4711e-05	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	
Harvard_focal_080606	Amplification Peak 6	4q12    	chr4:53846352-53951478(probes 51261:51269)    	chr4:53867072-53913374(probes 51263:51265)    	chr4:48777988-58291466(probes 51129:51598)    	1.8973e-18	    0.081842	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	
Harvard_focal_080606	Amplification Peak 7	4q12    	chr4:54486892-54580397(probes 51320:51330)    	chr4:54507498-54546893(probes 51322:51324)    	chr4:48777988-58291466(probes 51129:51598)    	2.4447e-40	  2.4446e-40	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	2	2	0	0	2	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	
Harvard_focal_080606	Amplification Peak 8	7p22.3  	chr7:984343-1810891(probes 84396:84483)          	chr7:984343-1012190(probes 84396:84399)          	chr7:1-1810891(probes 84371:84483)               	0.054803	     0.21093	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 9	7p22.2  	chr7:2447039-2616380(probes 84553:84560)        	chr7:2476104-2616380(probes 84555:84560)        	chr7:2290955-2704213(probes 84537:84564)        	0.006975	    0.006975	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 10	7p22.1  	chr7:5415186-5655830(probes 84787:84793)        	chr7:5415186-5647371(probes 84787:84792)        	chr7:5357203-5655830(probes 84782:84793)        	0.05908	     0.05908	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	
Harvard_focal_080606	Amplification Peak 11	7p15.2  	chr7:24909652-25247654(probes 86052:86079)    	chr7:25203745-25247654(probes 86076:86079)    	chr7:25203745-25247654(probes 86076:86079)    	0.086361	    0.086361	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 12	7p15.2  	chr7:26580375-27015727(probes 86174:86212)    	chr7:26744911-26783640(probes 86189:86191)    	chr7:26744911-26783640(probes 86189:86191)    	0.13972	     0.13972	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 13	7p15.1  	chr7:28659444-28994330(probes 86373:86408)    	chr7:28880071-28940161(probes 86400:86400)    	chr7:28659444-28940161(probes 86373:86400)    	0.06252	     0.06252	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 14	7p14.3  	chr7:32483171-33407072(probes 86742:86839)    	chr7:32667225-32957018(probes 86766:86789)    	chr7:32269032-33875479(probes 86728:86883)    	0.0073952	   0.0073952	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 15	7p12.1  	chr7:51621135-52262569(probes 88265:88282)    	chr7:51923945-52262569(probes 88275:88282)    	chr7:50422509-62313531(probes 88172:88572)    	2.078e-05	    0.062789	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 16	7p12.1  	chr7:52627359-52798844(probes 88296:88299)    	chr7:52627359-52798844(probes 88296:88299)    	chr7:50422509-62313531(probes 88172:88572)    	1.4547e-14	  0.00024535	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	
Harvard_focal_080606	Amplification Peak 17	7p11.2  	chr7:54892257-55065092(probes 88393:88398)    	chr7:54892257-55025313(probes 88393:88394)    	chr7:50422509-62313531(probes 88172:88572)    	1.9174e-232	 1.9175e-232	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	2	0	2	2	0	0	0	0	2	2	2	0	0	0	0	0	0	0	0	2	0	2	2	0	2	0	1	0	0	0	0	2	2	0	0	2	0	0	0	0	2	0	0	0	0	2	0	2	0	2	0	0	0	0	0	2	0	2	0	2	0	0	2	2	2	2	0	0	0	0	0	0	2	0	0	0	2	2	0	2	0	0	2	0	2	2	2	0	2	0	2	2	1	2	2	2	0	0	0	2	2	0	0	0	0	2	2	2	2	2	0	1	0	2	0	0	2	2	0	2	0	2	0	2	0	0	0	0	2	2	0	2	0	0	0	2	2	0	2	2	2	2	0	0	2	2	0	0	2	2	2	2	2	0	0	0	0	0	2	0	0	2	2	2	2	2	2	2	0	2	0	2	0	1	0	2	0	0	0	2	0	2	0	0	2	0	0	0	0	2	2	2	2	2	0	2	
Harvard_focal_080606	Amplification Peak 18	7p11.2  	chr7:55695924-55840342(probes 88455:88462)    	chr7:55743993-55802853(probes 88457:88458)    	chr7:50422509-62313531(probes 88172:88572)    	1.9915e-62	  0.00046683	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	2	0	2	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	2	0	2	0	0	0	0	0	0	2	1	0	1	2	0	0	0	0	0	0	0	0	0	0	0	2	2	2	0	0	0	0	0	0	2	2	0	2	0	0	0	2	0	0	0	0	2	0	0	2	0	0	0	2	0	0	2	0	0	0	0	0	1	2	0	0	1	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	2	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	
Harvard_focal_080606	Amplification Peak 19	7p11.2  	chr7:56520066-56808836(probes 88522:88537)    	chr7:56534334-56549583(probes 88524:88524)    	chr7:50422509-62313531(probes 88172:88572)    	6.7158e-16	   0.0091864	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	2	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	
Harvard_focal_080606	Amplification Peak 20	7q11.22 	chr7:67486025-67885576(probes 88829:88839)    	chr7:67621684-67832261(probes 88833:88837)    	chr7:67621684-67832261(probes 88833:88837)    	0.065109	     0.13972	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 21	7q21.11 	chr7:77709848-78107795(probes 89499:89545)    	chr7:77742653-77934602(probes 89503:89525)    	chr7:77353088-78107795(probes 89460:89545)    	0.016723	    0.016723	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	
Harvard_focal_080606	Amplification Peak 22	7q21.2  	chr7:91906289-92377127(probes 90443:90493)    	chr7:92016059-92377127(probes 90458:90493)    	chr7:91581083-92852636(probes 90407:90532)    	7.6312e-05	  7.6312e-05	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	
Harvard_focal_080606	Amplification Peak 23	7q31.1  	chr7:107573682-107653281(probes 91842:91849)	chr7:107573682-107653281(probes 91842:91849)	chr7:107573682-107653281(probes 91842:91849)	0.00021303	  0.00021303	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 24	7q31.1  	chr7:111998432-112455122(probes 92125:92148)	chr7:112211940-112269760(probes 92141:92145)	chr7:112211940-112269760(probes 92141:92145)	0.12686	     0.12686	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 25	7q31.2  	chr7:116107046-116295556(probes 92356:92374)	chr7:116143124-116295556(probes 92360:92374)	chr7:116042292-117489163(probes 92352:92498)	2.8185e-11	  2.8185e-11	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	
Harvard_focal_080606	Amplification Peak 26	7q31.31 	chr7:119387201-119825698(probes 92572:92599)	chr7:119568309-119648612(probes 92578:92580)	chr7:119387201-119648612(probes 92572:92580)	0.03565	     0.16322	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	
Harvard_focal_080606	Amplification Peak 27	7q32.3  	chr7:130182576-130888504(probes 93493:93554)	chr7:130335093-130465283(probes 93511:93521)	chr7:128069357-131172364(probes 93277:93566)	0.0048301	    0.062988	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	
Harvard_focal_080606	Amplification Peak 28	7q33    	chr7:133008082-133755167(probes 93730:93804)	chr7:133103606-133125991(probes 93742:93743)	chr7:133008082-133755167(probes 93730:93804)	0.0043434	    0.014405	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	
Harvard_focal_080606	Amplification Peak 29	7q36.1  	chr7:151450122-151533386(probes 95371:95377)	chr7:151462970-151533386(probes 95372:95377)	chr7:151045748-152991326(probes 95330:95455)	5.1616e-05	  5.1616e-05	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 30	11p13   	chr11:32391330-33598206(probes 125998:126108)	chr11:32453028-32474686(probes 126007:126007)	chr11:32391330-32474686(probes 125998:126007)	0.07677	     0.07677	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	
Harvard_focal_080606	Amplification Peak 31	12p13.32	chr12:3757530-4698480(probes 133852:133936)    	chr12:3809375-4303445(probes 133857:133892)    	chr12:3809375-4303445(probes 133857:133892)    	0.07677	     0.07677	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 32	12q13.3 	chr12:55962881-56091500(probes 138023:138032)	chr12:56030454-56056482(probes 138029:138029)	chr12:55948031-58236438(probes 138022:138167)	1.1325e-11	    0.038174	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 33	12q13.3 	chr12:56152448-56211109(probes 138049:138057)	chr12:56184062-56198377(probes 138055:138055)	chr12:55948031-58236438(probes 138022:138167)	2.1663e-29	  0.00013152	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	
Harvard_focal_080606	Amplification Peak 34	12q14.1 	chr12:56378328-56478010(probes 138081:138084)	chr12:56378328-56460711(probes 138081:138081)	chr12:55948031-58236438(probes 138022:138167)	4.3743e-45	  4.3743e-45	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	2	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	2	0	0	0	2	2	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	2	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	
Harvard_focal_080606	Amplification Peak 35	12q14.1 	chr12:57020751-57361794(probes 138115:138128)	chr12:57104796-57237827(probes 138117:138119)	chr12:55948031-58236438(probes 138022:138167)	2.7519e-11	    0.031612	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 36	12q14.1 	chr12:59415650-59745646(probes 138229:138237)	chr12:59553812-59714964(probes 138233:138236)	chr12:59230783-60325037(probes 138218:138257)	0.00010882	   0.0022325	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 37	12q14.1 	chr12:60673435-60878203(probes 138285:138303)	chr12:60734357-60824864(probes 138291:138297)	chr12:60673435-60878203(probes 138285:138303)	0.006975	    0.079345	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 38	12q14.2 	chr12:62822778-62942853(probes 138448:138458)	chr12:62848018-62885048(probes 138451:138453)	chr12:62137202-63438189(probes 138404:138503)	1.0927e-07	   4.043e-06	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	2	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 39	12q14.3 	chr12:64154540-64266034(probes 138568:138575)	chr12:64161993-64205629(probes 138569:138569)	chr12:64125223-64379194(probes 138565:138585)	0.00025039	     0.03126	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 40	12q14.3 	chr12:65555703-66080883(probes 138690:138714)	chr12:65805659-65950842(probes 138700:138705)	chr12:64869899-66312544(probes 138632:138721)	8.5092e-08	  3.2413e-06	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 41	12q15   	chr12:66798930-66855534(probes 138749:138753)	chr12:66815928-66843840(probes 138750:138751)	chr12:66343837-66860223(probes 138728:138754)	0.00019699	    0.040812	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 42	12q15   	chr12:67144797-67231512(probes 138787:138792)	chr12:67173216-67220041(probes 138789:138791)	chr12:67041820-69855882(probes 138780:139033)	1.1539e-07	  0.00011643	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 43	12q15   	chr12:67457153-67556212(probes 138825:138833)	chr12:67457153-67543828(probes 138825:138831)	chr12:67041820-69855882(probes 138780:139033)	1.5852e-37	  2.3165e-35	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	2	0	0	0	2	2	0	0	2	0	0	2	0	0	2	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	
Harvard_focal_080606	Amplification Peak 44	12q15   	chr12:68263567-68353032(probes 138893:138903)	chr12:68275907-68334427(probes 138895:138900)	chr12:67041820-69855882(probes 138780:139033)	2.0882e-09	    0.045474	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 45	12q15   	chr12:68782918-68990910(probes 138946:138956)	chr12:68858381-68968086(probes 138947:138954)	chr12:67041820-69855882(probes 138780:139033)	2.6284e-06	    0.038174	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 46	12q15   	chr12:69204520-69550468(probes 138978:139013)	chr12:69289113-69336821(probes 138987:138990)	chr12:67041820-69855882(probes 138780:139033)	1.0745e-05	   0.0065573	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 47	12q21.1 	chr12:73913477-74103091(probes 139295:139310)	chr12:73957667-73984846(probes 139298:139299)	chr12:73957667-74103091(probes 139298:139310)	0.052	     0.17744	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Deletion Peak 1	1p36.23 	chr1:7589629-8154500(probes 323:376)            	chr1:7920358-8000485(probes 357:366)            	chr1:7735056-9360697(probes 332:494)            	0.0028013	    0.085274	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Deletion Peak 2	1p36.23 	chr1:8395007-9194570(probes 394:488)            	chr1:8523859-9194570(probes 406:488)            	chr1:7735056-9360697(probes 332:494)            	1.095e-05	   1.095e-05	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	
Harvard_focal_080606	Deletion Peak 3	1p33    	chr1:51014080-51231084(probes 4027:4047)      	chr1:51062679-51218237(probes 4032:4046)      	chr1:50845730-51283189(probes 4010:4049)      	3.3185e-07	  3.3185e-07	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Deletion Peak 4	6q26    	chr6:162647400-162943702(probes 83847:83869)	chr6:162681429-162762348(probes 83850:83850)	chr6:162647400-162943702(probes 83847:83869)	0.01214	     0.01214	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Deletion Peak 5	9p22.1  	chr9:19703883-19997629(probes 106848:106865)  	chr9:19732116-19760114(probes 106850:106851)  	chr9:19448798-30588348(probes 106824:107496)  	2.4545e-20	  6.3146e-05	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Deletion Peak 6	9p21.3  	chr9:20661715-20936610(probes 106917:106954)  	chr9:20852647-20892538(probes 106947:106950)  	chr9:19448798-30588348(probes 106824:107496)  	1.4968e-53	    0.021619	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	2	0	0	0	0	1	0	0	2	0	0	0	2	0	0	0	0	0	2	0	0	1	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Deletion Peak 7	9p21.3  	chr9:21321182-21593913(probes 106998:107038)  	chr9:21444717-21494566(probes 107022:107029)  	chr9:19448798-30588348(probes 106824:107496)  	4.7594e-126	    0.047983	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	2	0	0	2	2	0	2	2	0	0	0	2	0	0	0	0	2	0	2	0	2	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	1	2	0	2	0	1	0	0	0	2	2	1	0	0	0	1	0	0	2	0	0	0	2	2	0	0	0	2	2	0	1	1	0	0	2	0	0	2	0	0	2	0	0	0	2	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	1	2	0	0	0	0	0	0	0	0	0	0	0	2	2	0	1	0	0	0	0	1	2	0	0	0	0	2	0	0	0	0	1	0	0	0	1	1	0	2	0	0	0	0	2	2	0	0	0	2	2	0	0	0	0	0	0	0	0	1	2	2	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	
Harvard_focal_080606	Deletion Peak 8	9p21.3  	chr9:21958041-21998165(probes 107059:107063)  	chr9:21968346-21993649(probes 107060:107062)  	chr9:19448798-30588348(probes 106824:107496)  	7.9693e-313	 7.9692e-313	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	2	0	0	0	2	0	0	2	2	2	2	2	2	0	0	2	0	0	1	2	2	0	2	0	2	2	0	0	0	1	0	0	2	2	0	0	2	0	0	0	0	0	0	1	2	0	2	0	0	2	2	0	1	0	0	1	2	0	2	0	1	0	2	2	2	2	2	0	2	1	1	0	0	2	0	0	0	2	2	0	2	2	2	2	0	1	1	0	0	2	0	0	2	2	0	2	0	1	0	2	0	0	2	0	0	0	1	0	0	2	2	2	0	0	1	0	0	2	0	1	2	0	2	0	0	0	2	1	2	0	0	2	2	2	0	1	0	2	2	2	1	2	2	0	0	1	2	0	0	1	2	1	2	2	0	1	1	1	2	0	0	0	0	2	2	2	0	2	2	2	1	0	2	0	0	0	1	2	1	2	2	1	2	0	2	2	2	2	2	0	2	2	2	2	0	0	0	
Harvard_focal_080606	Deletion Peak 9	9p21.3  	chr9:22919521-23405560(probes 107103:107119)  	chr9:23122133-23247333(probes 107112:107115)  	chr9:19448798-30588348(probes 106824:107496)  	6.7115e-95	    0.038456	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	0	0	0	2	0	0	2	0	0	0	2	2	0	0	0	0	0	0	2	0	0	2	0	0	2	0	0	0	1	0	0	2	0	0	0	2	0	0	0	0	0	0	1	0	0	2	0	0	2	0	0	1	0	0	0	2	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	2	0	1	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	2	0	1	2	0	2	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	1	2	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	2	2	0	0	0	2	0	0	0	0	0	2	0	2	2	0	0	0	
Harvard_focal_080606	Deletion Peak 10	9p21.3  	chr9:23603549-23740646(probes 107132:107143)  	chr9:23665998-23740646(probes 107136:107143)  	chr9:19448798-30588348(probes 106824:107496)  	1.4525e-83	  1.4076e-08	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	0	0	0	2	0	0	2	0	0	2	2	0	0	0	0	0	0	0	2	0	0	2	0	0	2	0	0	0	1	0	0	2	0	0	1	2	0	0	0	0	0	0	1	0	0	2	0	0	2	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	1	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	2	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	2	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	2	0	2	2	0	0	0	
Harvard_focal_080606	Deletion Peak 11	9p21.2  	chr9:26246129-26433720(probes 107228:107235)  	chr9:26311885-26376893(probes 107231:107232)  	chr9:19448798-30588348(probes 106824:107496)  	1.1031e-41	  2.5067e-12	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	1	0	0	0	2	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	2	0	2	2	0	0	0	
Harvard_focal_080606	Deletion Peak 12	9p21.2  	chr9:27960580-28329104(probes 107362:107396)  	chr9:27965909-28223217(probes 107363:107386)  	chr9:19448798-30588348(probes 106824:107496)  	4.8095e-13	    0.048167	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	
Harvard_focal_080606	Deletion Peak 13	10q23.31	chr10:89580501-89643513(probes 119734:119738)	chr10:89594690-89630076(probes 119735:119737)	chr10:89311273-91007118(probes 119706:119853)	9.1059e-21	  9.1059e-21	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	1	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	
Harvard_focal_080606	Deletion Peak 14	10q23.31	chr10:89791067-90299627(probes 119752:119788)	chr10:90000023-90182412(probes 119759:119775)	chr10:89311273-91007118(probes 119706:119853)	1.0372e-10	     0.10762	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	
Harvard_focal_080606	Deletion Peak 15	13q14.2 	chr13:47845532-48059198(probes 146327:146346)	chr13:47902124-47963280(probes 146334:146339)	chr13:47761536-48059198(probes 146317:146346)	0.00047619	  0.00047619	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 1 - log2 ratios	1p31.1  	chr1:71298556-71322899(probes 5734:5737)      	chr1:71298556-71322899(probes 5734:5737)      	chr1:71298556-71322899(probes 5734:5737)      	0.086361	    0.086361	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1424	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8456	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0178	0	0	0	0	0	0	0.8871	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 2 - log2 ratios	1q32.1  	chr1:202299299-203008525(probes 13579:13648)	chr1:202399046-202814266(probes 13591:13632)	chr1:201327370-203776979(probes 13487:13725)	6.5493e-14	  6.5493e-14	focal	Actual Log2 Ratio Given	0	0	0	1.5419	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5243	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0376	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5082	0	0.7895	0	1.5375	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5624	0	0	0	0	0	0	0	0	0	0	0	0	1.5072	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4352	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5217	0	0	0	0.5049	0	0	0	0	0	0	0	0	0	0	1.5429	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 3 - log2 ratios	1q44    	chr1:241494131-242812046(probes 16505:16621)	chr1:242184885-242812046(probes 16568:16621)	chr1:241494131-242812046(probes 16505:16621)	0.016723	    0.016723	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3101	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5293	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5324	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5609	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 4 - log2 ratios	2p24.3  	chr2:11979076-20827615(probes 17893:18362)    	chr2:14353787-17013162(probes 18004:18151)    	chr2:11979076-21008079(probes 17893:18372)    	0.01438	     0.01438	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	1.5431	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6685	0	0	0	0	0	0	0	0.7818	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.559	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5037	
Harvard_focal_080606	Amplification Peak 5 - log2 ratios	3q26.33 	chr3:182340789-183245653(probes 46707:46750)	chr3:182612379-182775400(probes 46720:46724)	chr3:177640393-185071295(probes 46394:46892)	9.4711e-05	  9.4711e-05	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4461	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5132	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5245	0	0	0	0	0	0.5144	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5364	1.0504	
Harvard_focal_080606	Amplification Peak 6 - log2 ratios	4q12    	chr4:53846352-53951478(probes 51261:51269)    	chr4:53867072-53913374(probes 51263:51265)    	chr4:48777988-58291466(probes 51129:51598)    	1.8973e-18	    0.081842	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	1.5431	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5384	0	0	1.5376	0	1.4884	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7262	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5077	1.5043	0	0	0	0	0	0	0	0	0	0	1.3152	0	0	0	0	0	0	0	0.9574	0	0	1.5125	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4965	0	0	0	0	0	1.1028	0	1.4853	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5069	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.4318	0	0	
Harvard_focal_080606	Amplification Peak 7 - log2 ratios	4q12    	chr4:54486892-54580397(probes 51320:51330)    	chr4:54507498-54546893(probes 51322:51324)    	chr4:48777988-58291466(probes 51129:51598)    	2.4447e-40	  2.4446e-40	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	1.5431	0	0	0	0	1.4966	0	0	0	0	0	0	1.1058	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5384	0	0	1.5376	0	1.4884	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7262	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4722	0	0	0	0	1.5077	1.5043	0	0	0	0	0	0	0	0	0	0	1.4499	0	0	0	0	0	0	0.7341	1.5227	0	0	1.5125	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1061	1.5602	0	1.4797	1.4965	0	0	1.5197	0	0	1.5132	0	1.4853	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3218	0	0	0	0	0	0	0	1.5069	0	0	0	0	0	0	0	0	0	0	0	0	0.5831	0	0	0	0	0	0.51229	0	0	0	0	0	0	0	0	0	0	0	0	1.5306	0	0	0	0	0.4318	0	0	
Harvard_focal_080606	Amplification Peak 8 - log2 ratios	7p22.3  	chr7:984343-1810891(probes 84396:84483)          	chr7:984343-1012190(probes 84396:84399)          	chr7:1-1810891(probes 84371:84483)               	0.054803	     0.21093	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1665	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.96004	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.705	0	0	0	0.4955	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0222	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 9 - log2 ratios	7p22.2  	chr7:2447039-2616380(probes 84553:84560)        	chr7:2476104-2616380(probes 84555:84560)        	chr7:2290955-2704213(probes 84537:84564)        	0.006975	    0.006975	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.792	0	0	0.5976	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2434	0.7503	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.705	0	0	0	0.4955	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8872	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 10 - log2 ratios	7p22.1  	chr7:5415186-5655830(probes 84787:84793)        	chr7:5415186-5647371(probes 84787:84792)        	chr7:5357203-5655830(probes 84782:84793)        	0.05908	     0.05908	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.623	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8297	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0784	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.5444	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3161	0	0.8908	
Harvard_focal_080606	Amplification Peak 11 - log2 ratios	7p15.2  	chr7:24909652-25247654(probes 86052:86079)    	chr7:25203745-25247654(probes 86076:86079)    	chr7:25203745-25247654(probes 86076:86079)    	0.086361	    0.086361	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4559	0	0	0	0	0	0	0	0	0	0	0	1.1459	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2823	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 12 - log2 ratios	7p15.2  	chr7:26580375-27015727(probes 86174:86212)    	chr7:26744911-26783640(probes 86189:86191)    	chr7:26744911-26783640(probes 86189:86191)    	0.13972	     0.13972	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.793	0	0	0	0	0	0	0	0	0	0	0	1.2673	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4965	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 13 - log2 ratios	7p15.1  	chr7:28659444-28994330(probes 86373:86408)    	chr7:28880071-28940161(probes 86400:86400)    	chr7:28659444-28940161(probes 86373:86400)    	0.06252	     0.06252	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7272	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2072	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4857	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8099	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 14 - log2 ratios	7p14.3  	chr7:32483171-33407072(probes 86742:86839)    	chr7:32667225-32957018(probes 86766:86789)    	chr7:32269032-33875479(probes 86728:86883)    	0.0073952	   0.0073952	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7082	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4559	0	0	0	0	0	0	0	0	0	0	0	1.1926	0	0	0	0	0	0	0	0	0	0.5623	0	0	0	0	0	0	0	0	0	0	1.5132	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 15 - log2 ratios	7p12.1  	chr7:51621135-52262569(probes 88265:88282)    	chr7:51923945-52262569(probes 88275:88282)    	chr7:50422509-62313531(probes 88172:88572)    	2.078e-05	    0.062789	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	1.5207	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7043	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5898	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.204	0	0	0	0	0	0	0	0	0	0	0	1.5241	0	0	0.6829	0.9832	0	0	0	0	0	0	0	0	0	0	0	1.1779	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 16 - log2 ratios	7p12.1  	chr7:52627359-52798844(probes 88296:88299)    	chr7:52627359-52798844(probes 88296:88299)    	chr7:50422509-62313531(probes 88172:88572)    	1.4547e-14	  0.00024535	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7043	0	0	1.5243	0	0	0	0	0.6578	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5898	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.204	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6829	1.4559	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4956	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5074	0	1.1705	0	0	0	0	0	0	0	0	0	1.5264	0	0	0	0	0	0	0	0	0	0	0	0	1.5153	1.5462	0	0	
Harvard_focal_080606	Amplification Peak 17 - log2 ratios	7p11.2  	chr7:54892257-55065092(probes 88393:88398)    	chr7:54892257-55025313(probes 88393:88394)    	chr7:50422509-62313531(probes 88172:88572)    	1.9174e-232	 1.9175e-232	focal	Actual Log2 Ratio Given	0	1.5439	0	1.5419	1.5587	0	0	0	0	1.4738	1.5979	1.5207	0	0	0	0	0	0	0	0	1.5518	0	1.5448	1.5384	0	1.4461	0	0.7799	0	0	0	0	1.5453	1.4993	0	0	1.5243	0	0	0	0	1.5308	0	0	0	0	1.5348	0	1.5472	0	1.4799	0	0	0	0	0	1.548	0	1.5038	0	1.5417	0	0	1.5898	1.5362	1.5163	1.4945	0	0	0	0	0	0	1.5158	0	0	0	1.4976	1.5231	0	1.204	0	0	1.5412	0	1.507	1.5213	1.5164	0	1.5367	0	1.4779	1.5241	0.674	1.5375	1.5427	1.2755	0	0	0	1.5293	1.4185	0	0	0	0	1.5271	1.5523	1.1765	1.5321	1.539	0	0.3669	0	1.2456	0	0	1.5371	1.5681	0	1.5602	0	1.4797	0	1.5143	0	0	0	0	1.5132	1.5421	0	1.5072	0	0	0	1.5681	1.5473	0	1.5677	1.4606	1.5908	1.4731	0	0	1.4956	1.5993	0	0	1.4352	1.476	1.5522	1.5114	1.4843	0	0	0	0	0	1.5197	0	0	1.5307	1.5245	1.5324	1.5473	1.5566	1.5217	1.5074	0	1.2783	0	1.5283	0	0.8248	0	1.0948	0	0	0	1.5264	0	1.5429	0	0	1.5439	0	0	0	0	1.4803	1.5609	1.5721	1.5153	1.5462	0	1.5037	
Harvard_focal_080606	Amplification Peak 18 - log2 ratios	7p11.2  	chr7:55695924-55840342(probes 88455:88462)    	chr7:55743993-55802853(probes 88457:88458)    	chr7:50422509-62313531(probes 88172:88572)    	1.9915e-62	  0.00046683	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	1.5979	0	0	0	0	0	0	0	0	0	0	0	1.5448	1.5384	0	1.4461	0	0	0	0	0	0	1.5453	0.6941	0	0	0	0	0	0	0	0.8079	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.548	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5158	0	0	0	0	0	0	1.204	0	0	1.5412	0	1.507	0	0	0	0	0	0	1.5241	0.674	0	0.5802	1.031	0	0	0	0	0	0	0	0	0	0	0	1.1632	1.5321	1.539	0	0	0	0	0	0	1.5371	1.5681	0	1.5602	0	0	0	1.5143	0	0	0	0	1.5132	0	0	1.5072	0	0	0	1.1289	0	0	1.5677	0	0	0	0	0	0.8461	1.5993	0	0	0.5814	0	0	0	1.4843	0	0	0	0	0	1.5197	0	0	0	0	0	1.5473	0.6726	0	1.1898	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5429	0	0	0	0	0	0	0	0	0	0	1.5153	0	0	0	
Harvard_focal_080606	Amplification Peak 19 - log2 ratios	7p11.2  	chr7:56520066-56808836(probes 88522:88537)    	chr7:56534334-56549583(probes 88524:88524)    	chr7:50422509-62313531(probes 88172:88572)    	6.7158e-16	   0.0091864	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4461	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.548	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5412	0	0	0	0	0	0	0	0	0	0	0	1.5427	0.7178	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5602	0	0	0	1.3767	0	0	0	0	1.5132	0	0	1.4391	0	0	0	0	0	0	1.0717	0	0	0	0	0	0.8461	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5473	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5153	0	0	0	
Harvard_focal_080606	Amplification Peak 20 - log2 ratios	7q11.22 	chr7:67486025-67885576(probes 88829:88839)    	chr7:67621684-67832261(probes 88833:88837)    	chr7:67621684-67832261(probes 88833:88837)    	0.065109	     0.13972	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6237	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.5445	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4965	0	0	0	0	0	1.5132	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 21 - log2 ratios	7q21.11 	chr7:77709848-78107795(probes 89499:89545)    	chr7:77742653-77934602(probes 89503:89525)    	chr7:77353088-78107795(probes 89460:89545)    	0.016723	    0.016723	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4461	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7751	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.863	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5132	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3277	0	0	
Harvard_focal_080606	Amplification Peak 22 - log2 ratios	7q21.2  	chr7:91906289-92377127(probes 90443:90493)    	chr7:92016059-92377127(probes 90458:90493)    	chr7:91581083-92852636(probes 90407:90532)    	7.6312e-05	  7.6312e-05	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4155	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8522	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8334	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4965	0	0	0	0	0	1.5132	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6793	0	0	0	0	0	0	0	0	0	0	0.8549	0	0	0	
Harvard_focal_080606	Amplification Peak 23 - log2 ratios	7q31.1  	chr7:107573682-107653281(probes 91842:91849)	chr7:107573682-107653281(probes 91842:91849)	chr7:107573682-107653281(probes 91842:91849)	0.00021303	  0.00021303	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3678	0	0	0.5384	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.505	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2997	0	0	0	0	0	0	1.5307	0	0	0	0	0	0	0	0	1.0081	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 24 - log2 ratios	7q31.1  	chr7:111998432-112455122(probes 92125:92148)	chr7:112211940-112269760(probes 92141:92145)	chr7:112211940-112269760(probes 92141:92145)	0.12686	     0.12686	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2339	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4853	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9945	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 25 - log2 ratios	7q31.2  	chr7:116107046-116295556(probes 92356:92374)	chr7:116143124-116295556(probes 92360:92374)	chr7:116042292-117489163(probes 92352:92498)	2.8185e-11	  2.8185e-11	focal	Actual Log2 Ratio Given	0	0	0	0	0	1.1662	0	0	0	0	0	0	1.4966	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7438	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5124	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2625	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4853	0	1.6072	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5676	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3659	0	0	1.5462	0	0	
Harvard_focal_080606	Amplification Peak 26 - log2 ratios	7q31.31 	chr7:119387201-119825698(probes 92572:92599)	chr7:119568309-119648612(probes 92578:92580)	chr7:119387201-119648612(probes 92572:92580)	0.03565	     0.16322	focal	Actual Log2 Ratio Given	0	0	0	0	0	1.1662	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3354	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5158	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5462	0	0	
Harvard_focal_080606	Amplification Peak 27 - log2 ratios	7q32.3  	chr7:130182576-130888504(probes 93493:93554)	chr7:130335093-130465283(probes 93511:93521)	chr7:128069357-131172364(probes 93277:93566)	0.0048301	    0.062988	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8997	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7753	0	0	0	0	1.0176	0	0	0	0	0	0	1.1767	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.5922	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7313	0	0	0	0	0	0	0	0	0.5311	0	0	
Harvard_focal_080606	Amplification Peak 28 - log2 ratios	7q33    	chr7:133008082-133755167(probes 93730:93804)	chr7:133103606-133125991(probes 93742:93743)	chr7:133008082-133755167(probes 93730:93804)	0.0043434	    0.014405	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7753	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4853	0	0	0	0	1.2476	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7313	0	0	0	0	0	0	0	0	1.5462	0	0	
Harvard_focal_080606	Amplification Peak 29 - log2 ratios	7q36.1  	chr7:151450122-151533386(probes 95371:95377)	chr7:151462970-151533386(probes 95372:95377)	chr7:151045748-152991326(probes 95330:95455)	5.1616e-05	  5.1616e-05	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.4135	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8566	0.4134	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8799	0	0	0	0	0	0	1.0508	0	0	0	0	0	1.2255	0	0	0.791	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7313	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 30 - log2 ratios	11p13   	chr11:32391330-33598206(probes 125998:126108)	chr11:32453028-32474686(probes 126007:126007)	chr11:32391330-32474686(probes 125998:126007)	0.07677	     0.07677	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.6025	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8493	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5462	0	0	
Harvard_focal_080606	Amplification Peak 31 - log2 ratios	12p13.32	chr12:3757530-4698480(probes 133852:133936)    	chr12:3809375-4303445(probes 133857:133892)    	chr12:3809375-4303445(probes 133857:133892)    	0.07677	     0.07677	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0321	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5375	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4099	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 32 - log2 ratios	12q13.3 	chr12:55962881-56091500(probes 138023:138032)	chr12:56030454-56056482(probes 138029:138029)	chr12:55948031-58236438(probes 138022:138167)	1.1325e-11	    0.038174	focal	Actual Log2 Ratio Given	0	0	1.5333	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5214	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4942	0	0	0	0.6873	0	0	0	0	0	0	0	1.685	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5293	1.5227	0	0	1.5125	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5421	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0981	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 33 - log2 ratios	12q13.3 	chr12:56152448-56211109(probes 138049:138057)	chr12:56184062-56198377(probes 138055:138055)	chr12:55948031-58236438(probes 138022:138167)	2.1663e-29	  0.00013152	focal	Actual Log2 Ratio Given	0	1.5439	1.5333	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5214	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4942	0	0	0	0.6873	0	0	0	0	0	0	0	1.685	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5164	0	0	0	0	0	0	0	0	0	0	0	0	1.5293	1.5227	0	0	1.5125	0	0	1.5523	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4965	0	1.5063	0	0	0	1.5132	1.5421	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.476	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0981	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4082	1.5364	0	
Harvard_focal_080606	Amplification Peak 34 - log2 ratios	12q14.1 	chr12:56378328-56478010(probes 138081:138084)	chr12:56378328-56460711(probes 138081:138081)	chr12:55948031-58236438(probes 138022:138167)	4.3743e-45	  4.3743e-45	focal	Actual Log2 Ratio Given	0	1.5439	1.5333	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5384	0	0	0	0	0	0	0	1.5214	0	0	0	0	0	1.5376	0	0	0	0	0	0	0	0	0	1.2836	1.5472	0	0	0.6873	0	0	0	0	0	0	0	1.685	0	0	0	0	0	0	0	0	0	0	0	0	1.526	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5164	0	0	0	0	0	0	1.5375	0	1.4559	0	0	0	1.5293	1.5227	0	0	1.5125	0	0	1.5523	0	0	0	0	0	0	0	0	0	0	1.5681	0	0	0	0	1.4965	0	1.5063	0	0	0	1.5132	1.5421	0	0	0	0	0	0	0	0	0	0	0	0	1.4956	0	0	0	0	0	0	1.476	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0981	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5364	0	
Harvard_focal_080606	Amplification Peak 35 - log2 ratios	12q14.1 	chr12:57020751-57361794(probes 138115:138128)	chr12:57104796-57237827(probes 138117:138119)	chr12:55948031-58236438(probes 138022:138167)	2.7519e-11	    0.031612	focal	Actual Log2 Ratio Given	0	0	1.5333	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5214	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.6372	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5164	0	0	0	0	0	0	0	0	1.4559	0	0	0	1.5293	-1.0043	0	0	0	0	0	1.5523	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4965	0	0	0	0	0	0	1.5421	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 36 - log2 ratios	12q14.1 	chr12:59415650-59745646(probes 138229:138237)	chr12:59553812-59714964(probes 138233:138236)	chr12:59230783-60325037(probes 138218:138257)	0.00010882	   0.0022325	focal	Actual Log2 Ratio Given	0	0	1.5333	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.46	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.5769	0	0	0	0	0	0	0	0	0	0	0	-0.6741	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5293	1.5227	0	0	0.939	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 37 - log2 ratios	12q14.1 	chr12:60673435-60878203(probes 138285:138303)	chr12:60734357-60824864(probes 138291:138297)	chr12:60673435-60878203(probes 138285:138303)	0.006975	    0.079345	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5214	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4942	0	0	0	0	0	0	0	0	0	0	0	-0.6741	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9056	0	0	0	0	0	0	0	0	0	-1.0056	0	0	0	0	0	1.5523	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 38 - log2 ratios	12q14.2 	chr12:62822778-62942853(probes 138448:138458)	chr12:62848018-62885048(probes 138451:138453)	chr12:62137202-63438189(probes 138404:138503)	1.0927e-07	   4.043e-06	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5214	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4942	0	0	0	0	0	0	0	0	0	0	0	-0.6741	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4779	0	0	0	0	1.4559	0	0	0	0	1.5227	0	0	1.5125	0	0	1.5523	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 39 - log2 ratios	12q14.3 	chr12:64154540-64266034(probes 138568:138575)	chr12:64161993-64205629(probes 138569:138569)	chr12:64125223-64379194(probes 138565:138585)	0.00025039	     0.03126	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5214	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.6741	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5164	0	0	0	0	0	0	0	0	1.0725	0	0	0	0	-1.0372	0	0	1.5125	0	0	1.5523	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 40 - log2 ratios	12q14.3 	chr12:65555703-66080883(probes 138690:138714)	chr12:65805659-65950842(probes 138700:138705)	chr12:64869899-66312544(probes 138632:138721)	8.5092e-08	  3.2413e-06	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5214	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.6741	0	0	0	0	0	0	0	1.49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4559	0	0	0	0	-1.0372	0	0	1.5125	0	0	1.5523	0	0	1.539	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5416	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 41 - log2 ratios	12q15   	chr12:66798930-66855534(probes 138749:138753)	chr12:66815928-66843840(probes 138750:138751)	chr12:66343837-66860223(probes 138728:138754)	0.00019699	    0.040812	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5214	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4942	0	0	0	0	0	0	0	0	0	0	0	-0.6741	0	0	0	0	0	0	0	1.49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2607	0	0	0	0	-1.0372	0	0	0	0	0	0	0	0	1.539	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 42 - log2 ratios	12q15   	chr12:67144797-67231512(probes 138787:138792)	chr12:67173216-67220041(probes 138789:138791)	chr12:67041820-69855882(probes 138780:139033)	1.1539e-07	  0.00011643	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5202	0	0	0	0	1.5214	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4942	0	0	0	0	0	0	0	0	0	0	0	-0.6741	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5181	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4559	0	0	0	0	-1.0372	0	0	1.5125	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4965	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 43 - log2 ratios	12q15   	chr12:67457153-67556212(probes 138825:138833)	chr12:67457153-67543828(probes 138825:138831)	chr12:67041820-69855882(probes 138780:139033)	1.5852e-37	  2.3165e-35	focal	Actual Log2 Ratio Given	0	0	1.5333	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4359	0	0	0	0	1.5202	0	0	0	0	1.5214	0	0	0	0	1.5243	0	0	0	0	0	0	0	0	0	0	1.4942	1.5472	0	0	0	0	0	0	0	0	0	0	-0.6741	0	0	0	0	0	0	0	1.49	0	0	0	1.4653	0	0	1.5181	0	0	0	0	0	0	0	0	0	0	0	0	1.5164	0	0	0	1.4779	0	0	0	0	1.4559	0	0	0	1.5293	1.5227	0	0	1.5125	0	0	1.5523	0	0	1.539	0	0	0	0	0	0	0	1.5681	0	0	0	1.4797	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5416	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5462	0	0	
Harvard_focal_080606	Amplification Peak 44 - log2 ratios	12q15   	chr12:68263567-68353032(probes 138893:138903)	chr12:68275907-68334427(probes 138895:138900)	chr12:67041820-69855882(probes 138780:139033)	2.0882e-09	    0.045474	focal	Actual Log2 Ratio Given	0	0	1.5333	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5214	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4942	1.5472	0	0	0	0	0	0	0	0	0	0	-0.6741	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5164	0	0	0	1.45	0	0	0	0	0	0	0	0	0	0	0	0	1.5125	0	0	0	0	0	1.539	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 45 - log2 ratios	12q15   	chr12:68782918-68990910(probes 138946:138956)	chr12:68858381-68968086(probes 138947:138954)	chr12:67041820-69855882(probes 138780:139033)	2.6284e-06	    0.038174	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5214	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5472	0	0	0	0	0	0	0	0	0	0	-0.6741	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4779	0	0	0	0	0	0	0	0	0	0	0	0	1.5125	0	0	1.5523	0	0	1.539	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 46 - log2 ratios	12q15   	chr12:69204520-69550468(probes 138978:139013)	chr12:69289113-69336821(probes 138987:138990)	chr12:67041820-69855882(probes 138780:139033)	1.0745e-05	   0.0065573	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5214	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5472	0	0	0	0	0	0	0	0	0	0	1.685	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7544	0	0	0	0	0	0	0	1.5125	0	0	1.5523	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Amplification Peak 47 - log2 ratios	12q21.1 	chr12:73913477-74103091(probes 139295:139310)	chr12:73957667-73984846(probes 139298:139299)	chr12:73957667-74103091(probes 139298:139310)	0.052	     0.17744	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0.9836	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0681	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.685	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6455	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Deletion Peak 1 - log2 ratios	1p36.23 	chr1:7589629-8154500(probes 323:376)            	chr1:7920358-8000485(probes 357:366)            	chr1:7735056-9360697(probes 332:494)            	0.0028013	    0.085274	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4837	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4604	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4717	0	0	0	0	0	0	-0.9406	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Deletion Peak 2 - log2 ratios	1p36.23 	chr1:8395007-9194570(probes 394:488)            	chr1:8523859-9194570(probes 406:488)            	chr1:7735056-9360697(probes 332:494)            	1.095e-05	   1.095e-05	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4837	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.7967	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9258	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4007	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4279	0	0	0	0	
Harvard_focal_080606	Deletion Peak 3 - log2 ratios	1p33    	chr1:51014080-51231084(probes 4027:4047)      	chr1:51062679-51218237(probes 4032:4046)      	chr1:50845730-51283189(probes 4010:4049)      	3.3185e-07	  3.3185e-07	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4624	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4842	0	0	0	0	0	0	0	0	-1.4957	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4578	0	0	-0.77693	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5147	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.6673	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Deletion Peak 4 - log2 ratios	6q26    	chr6:162647400-162943702(probes 83847:83869)	chr6:162681429-162762348(probes 83850:83850)	chr6:162647400-162943702(probes 83847:83869)	0.01214	     0.01214	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.1828	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.6837	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9336	0	0	0	0	0	0	0	0	-0.9187	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9195	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Deletion Peak 5 - log2 ratios	9p22.1  	chr9:19703883-19997629(probes 106848:106865)  	chr9:19732116-19760114(probes 106850:106851)  	chr9:19448798-30588348(probes 106824:107496)  	2.4545e-20	  6.3146e-05	focal	Actual Log2 Ratio Given	0	0	0	0	-1.4413	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4482	0	0	0	0	0	0	0	0	0	0	0	-1.3135	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4652	0	0	0	0	0	0	0	0	-1.1318	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.1305	0	0	-1.4842	0	0	0	-1.5024	0	0	0	0	0	0	0	0	-0.3843	0	0	0	0	0	-1.4759	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4679	0	0	0	0	0	0	0	-1.4629	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4007	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.494	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Deletion Peak 6 - log2 ratios	9p21.3  	chr9:20661715-20936610(probes 106917:106954)  	chr9:20852647-20892538(probes 106947:106950)  	chr9:19448798-30588348(probes 106824:107496)  	1.4968e-53	    0.021619	focal	Actual Log2 Ratio Given	0	0	0	0	-1.4413	0	0	0	-1.4832	0	0	0	0	0	0	-1.4505	0	0	0	0	-1.4482	0	-1.4552	0	0	0	0	0	0	0	0	0	-1.3367	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4652	0	0	0	0	0	0	0	0	-1.1318	0	0	-1.4962	0	0	0	0	0	0	-1.4837	0	0	0	0	-1.109	0	0	-1.4842	0	0	0	-1.5024	0	0	0	0	0	-1.4588	0	0	-0.3843	0	0	-1.4633	0	0	-1.4759	0	0	0	0	0	0	0	0	0	-1.4604	0	0	0	0	0	0	-1.4679	0	0	0	0	0	0	0	-1.4629	0	0	-1.4398	0	0	0	0	0	0	0	0	0	0	0	-1.4928	0	0	-1.1573	0	0	0	0	0	0	0	0	0	0	-1.4007	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4755	0	0	0	0	-1.4926	-1.494	0	0	0	0	0	0	0	0	0	0	-1.4736	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_focal_080606	Deletion Peak 7 - log2 ratios	9p21.3  	chr9:21321182-21593913(probes 106998:107038)  	chr9:21444717-21494566(probes 107022:107029)  	chr9:19448798-30588348(probes 106824:107496)  	4.7594e-126	    0.047983	focal	Actual Log2 Ratio Given	0	0	0	0	-1.4413	0	0	-1.4569	-1.4832	0	-1.4021	-1.4793	0	0	0	-1.4505	0	0	0	0	-1.4482	0	-1.4552	0	-1.4728	0	0	0	0	-0.5048	0	0	-1.3367	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4652	0	0	0	-1.5201	0	0	0	0	-1.1318	-1.452	0	-1.4962	0	-1.2703	0	0	0	-1.4638	-1.4837	-1.2764	0	0	0	-1.109	0	0	-1.4842	0	0	0	-1.5024	-1.305	0	0	0	-1.4957	-1.4588	0	-1.1387	-0.3843	0	0	-1.4633	0	0	-1.4759	0	0	-1.4573	0	0	0	-1.498	0	0	-1.4604	0	0	0	0	0	0	-1.4679	0	0	0	0	0	0	0	-1.4629	0	-0.8833	-1.4398	0	0	0	0	0	0	0	0	0	0	0	-1.4928	-1.3928	0	-1.1573	0	0	0	0	-1.1277	-1.4092	0	0	0	0	-1.4007	0	0	0	0	-1.0348	0	0	0	-1.1748	-1.1356	0	-1.5155	0	0	0	0	-1.4755	-1.4676	0	0	0	-1.4926	-1.494	0	0	0	0	0	0	0	0	-0.9328	-1.4102	-1.4736	0	0	0	0	-1.4561	0	0	0	0	0	0	-1.4279	0	0	0	0	
Harvard_focal_080606	Deletion Peak 8 - log2 ratios	9p21.3  	chr9:21958041-21998165(probes 107059:107063)  	chr9:21968346-21993649(probes 107060:107062)  	chr9:19448798-30588348(probes 106824:107496)  	7.9693e-313	 7.9692e-313	focal	Actual Log2 Ratio Given	-1.3773	0	0	0	-1.4413	0	0	-1.4569	-1.4832	-1.5262	-1.4021	-1.4793	-1.5034	0	0	-1.4505	0	0	-1.011	-1.3975	-1.4482	0	-1.4552	0	-1.4728	-1.5539	0	0	0	-0.5048	0	0	-1.3367	-1.3566	0	0	-1.4757	0	0	0	0	0	0	-0.7976	-1.4273	0	-1.4652	0	0	-1.4931	-1.5201	0	-1.0132	0	0	-1.1318	-1.452	0	-1.4962	0	-1.2152	0	-1.4876	-1.4069	-1.4638	-1.4837	-1.5055	0	-1.4167	-0.9009	-1.109	0	0	-1.4842	0	0	0	-1.5024	-1.4769	0	-1.4687	-1.4923	-1.4957	-1.4588	0	-1.1387	-0.3843	0	0	-1.4633	0	0	-1.4759	-1.5189	0	-1.4573	0	-1.1939	0	-1.498	0	0	-1.4604	0	0	0	-0.6941	0	0	-1.4679	-1.461	-1.4578	0	0	-1.0128	0	0	-1.4629	0	-0.8833	-1.4398	0	-1.5203	0	0	0	-1.4803	-1.012	-1.4348	0	0	-1.5147	-1.4928	-1.3928	0	-1.1573	0	-1.4527	-1.4584	-1.4323	-1.1277	-1.4092	-1.5269	0	0	-1.0481	-1.4007	0	0	-1.2594	-1.524	-1.0348	-1.4886	-1.5157	0	-1.1748	-1.1356	-1.2362	-1.5155	0	0	0	0	-1.4755	-1.4676	-1.4527	0	-1.4783	-1.4926	-1.494	-0.7811	0	-1.4717	0	0	0	-0.72381	-1.5328	-0.9328	-1.4102	-1.4736	-0.8128	-1.4571	0	-1.5163	-1.4561	-1.5136	-1.4965	-1.5158	0	-1.5197	-1.4391	-1.4279	-1.4847	0	0	0	
Harvard_focal_080606	Deletion Peak 9 - log2 ratios	9p21.3  	chr9:22919521-23405560(probes 107103:107119)  	chr9:23122133-23247333(probes 107112:107115)  	chr9:19448798-30588348(probes 106824:107496)  	6.7115e-95	    0.038456	focal	Actual Log2 Ratio Given	-0.7525	0	0	0	-1.4413	0	0	-1.4569	0	0	0	-1.4793	-1.5034	0	0	0	0	0	0	-1.3975	0	0	-1.4552	0	0	-1.5539	0	0	0	-0.5048	0	0	-1.3048	0	0	0	-1.4757	0	0	0	0	0	0	-0.7976	0	0	-1.4652	0	0	-1.4931	0	0	-1.0132	0	0	0	-1.452	0	-1.4962	0	0	0	0	0	0	-1.4837	0	0	0	0	0	0	0	0	0	0	0	0	-1.1335	0	0	-1.4923	0	-1.4588	0	-1.1387	-0.3843	0	0	-1.4633	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4578	0	-0.8302	0	0	0	-1.4629	0	-0.8833	-1.4398	0	-1.5203	0	0	0	0	0	0	0	0	0	0	-1.3928	0	-1.1573	0	0	0	0	-1.2138	-1.4092	0	0	0	0	-1.4007	0	0	0	0	-1.0348	0	0	0	0	0	0	-1.5155	0	0	0	0	-1.4755	0	0	0	0	-1.4926	0	0	0	-1.4717	0	0	0	0	0	0	-1.4102	-1.4736	0	0	0	-1.5163	0	0	0	0	0	-1.5197	0	-1.4279	-1.4847	0	0	0	
Harvard_focal_080606	Deletion Peak 10 - log2 ratios	9p21.3  	chr9:23603549-23740646(probes 107132:107143)  	chr9:23665998-23740646(probes 107136:107143)  	chr9:19448798-30588348(probes 106824:107496)  	1.4525e-83	  1.4076e-08	focal	Actual Log2 Ratio Given	-0.7525	0	0	0	-1.4413	0	0	-1.4569	0	0	-1.4021	-1.4793	0	0	0	0	0	0	0	-1.3975	0	0	-1.4552	0	0	-1.5539	0	0	0	-0.5048	0	0	-1.3738	0	0	-1.2423	-1.4757	0	0	0	0	0	0	-0.7976	0	0	-1.4652	0	0	-1.4931	0	0	-1.0132	0	0	0	0	0	-1.4962	0	0	0	0	0	0	-1.4837	0	0	0	-0.8986	0	0	0	0	0	0	0	0	0	0	0	-1.4923	0	-1.4588	0	-1.1387	-0.3843	0	0	-1.4633	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4578	0	-0.8302	0	0	0	-1.4629	0	0	-1.4398	0	-1.5203	0	0	0	0	0	0	0	0	0	0	0	0	-1.1573	0	0	0	0	-1.2138	-1.4092	0	0	0	0	-1.4007	0	0	0	0	-1.0348	0	0	0	0	0	0	-1.5155	0	0	0	0	0	0	0	0	0	-1.4926	0	0	0	-1.4717	0	0	0	0	0	0	-1.4102	0	0	0	0	-1.5163	0	0	0	0	0	-1.5197	0	-1.4279	-1.4847	0	0	0	
Harvard_focal_080606	Deletion Peak 11 - log2 ratios	9p21.2  	chr9:26246129-26433720(probes 107228:107235)  	chr9:26311885-26376893(probes 107231:107232)  	chr9:19448798-30588348(probes 106824:107496)  	1.1031e-41	  2.5067e-12	focal	Actual Log2 Ratio Given	-0.7525	0	0	0	0	0	0	0	0	0	-1.4021	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5539	0	0	0	-0.5048	0	0	-1.2748	0	0	0	-1.4757	0	0	0	0	0	0	-0.7976	0	0	-1.4652	0	0	0	0	0	-1.0132	0	0	0	0	0	-1.4962	0	0	0	0	0	0	-1.4837	0	0	0	-0.921	0	0	0	0	0	0	0	0	0	0	0	-1.4923	0	0	0	-1.0698	-0.3843	0	0	-1.4588	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4578	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.1137	0	0	0	0	0	0	0	-1.0939	0	0	0	0	0	-1.4092	0	0	0	0	0	0	0	0	0	-1.0348	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4102	0	0	0	0	0	0	0	0	-1.5353	0	-1.5197	0	-1.4279	-1.4847	0	0	0	
Harvard_focal_080606	Deletion Peak 12 - log2 ratios	9p21.2  	chr9:27960580-28329104(probes 107362:107396)  	chr9:27965909-28223217(probes 107363:107386)  	chr9:19448798-30588348(probes 106824:107496)  	4.8095e-13	    0.048167	focal	Actual Log2 Ratio Given	-0.7525	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5539	0	0	0	0	0	0	0	0	0	0	-1.4757	0	0	0	0	0	0	-0.7976	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4837	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.1406	-0.3843	0	0	-1.4588	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4398	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4092	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5197	0	0	0	0	0	0	
Harvard_focal_080606	Deletion Peak 13 - log2 ratios	10q23.31	chr10:89580501-89643513(probes 119734:119738)	chr10:89594690-89630076(probes 119735:119737)	chr10:89311273-91007118(probes 119706:119853)	9.1059e-21	  9.1059e-21	focal	Actual Log2 Ratio Given	0	0	-1.3144	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.1125	0	0	-1.1745	-1.4552	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4918	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5203	0	0	0	0	0	0	0	0	0	0	0	-1.6293	0	-1.2221	-1.4527	-1.4584	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.253	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5687	0	0	0	0	0	0	-0.767	0	0	0	0	0	0	0	0	0	0	0	-1.4847	0	0	0	
Harvard_focal_080606	Deletion Peak 14 - log2 ratios	10q23.31	chr10:89791067-90299627(probes 119752:119788)	chr10:90000023-90182412(probes 119759:119775)	chr10:89311273-91007118(probes 119706:119853)	1.0372e-10	     0.10762	focal	Actual Log2 Ratio Given	0	0	-1.3144	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5203	0	0	0	0	0	0	0	0	0	0	0	-1.6293	0	-1.2221	0	-1.4584	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5687	0	0	0	0	0	0	-0.767	0	0	0	0	0	0	0	0	0	0	0	-1.4847	0	0	-0.69016	
Harvard_focal_080606	Deletion Peak 15 - log2 ratios	13q14.2 	chr13:47845532-48059198(probes 146327:146346)	chr13:47902124-47963280(probes 146334:146339)	chr13:47761536-48059198(probes 146317:146346)	0.00047619	  0.00047619	focal	Actual Log2 Ratio Given	-0.562	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.8537	-1.6293	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4554	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5136	0	0	0	0	0	0	0	0	0	0	
MSKCC_standard_080606	Amplification Peak 1	1q32.1 	chr1:202596724-202801981(probes 13971:13986)	chr1:202658777-202692536(probes 13974:13975)	chr1:201332880-203776980(probes 13841:14078)	5.2571e-14	 5.2571e-14	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	1	0	2	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	2	1	1	0	2	0	0	0	1	0	0	0	0	0	0	1	0	1	0	1	0	1	0	0	0	1	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	2	0	0	0	1	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	1	1	0	0	1	0	
MSKCC_standard_080606	Amplification Peak 2	3q26.33	chr3:182340790-182889728(probes 47573:47597)	chr3:182612380-182775401(probes 47586:47590)	chr3:182168723-183245654(probes 47562:47616)	0.020502	   0.020502	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	1	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	1	0	1	0	1	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	2	2	0	
MSKCC_standard_080606	Amplification Peak 3	4q12   	chr4:54498653-54580398(probes 52275:52284)    	chr4:54525205-54546894(probes 52277:52278)    	chr4:52594530-57966958(probes 52109:52535)    	1.2125e-34	 1.2125e-34	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	2	0	0	2	1	2	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	1	0	0	1	1	2	0	0	2	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	2	2	0	2	0	2	0	0	2	0	0	2	1	2	1	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	2	0	0	1	0	1	0	0	0	
MSKCC_standard_080606	Amplification Peak 4	7p22.3 	chr7:1-1815583(probes 85724:85857)               	chr7:1-1447234(probes 85724:85810)               	chr7:1-158620918(probes 85724:97517)           	5.2849e-69	   0.027939	broad	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	1	1	1	1	0	0	0	1	1	1	1	0	1	0	1	0	1	1	1	1	0	1	1	0	0	1	1	1	1	0	0	1	0	0	1	1	1	1	1	0	0	0	1	1	1	1	1	1	0	1	1	1	1	0	1	1	0	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	0	0	0	1	0	1	1	1	1	1	1	1	1	0	0	1	1	1	1	1	0	0	1	1	1	1	1	1	0	1	1	0	1	0	1	1	1	1	1	1	1	1	1	1	2	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	1	1	1	1	1	2	1	0	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	0	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	1	1	0	1	0	1	1	1	0	0	1	1	1	
MSKCC_standard_080606	Amplification Peak 5	7p11.2 	chr7:54892258-55065093(probes 89821:89827)    	chr7:54892258-55044147(probes 89821:89824)    	chr7:1-158620918(probes 85724:97517)           	6.1591e-279	 6.159e-279	both	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	1	2	1	2	0	0	0	1	2	2	2	0	1	0	1	0	1	1	1	2	0	2	2	0	2	1	1	1	1	0	0	2	2	1	1	2	1	1	1	0	2	0	1	1	1	2	1	2	0	2	1	1	1	0	1	2	0	2	1	2	1	1	2	2	2	2	1	1	1	1	1	1	2	1	0	0	2	2	0	2	1	1	2	1	2	2	2	2	0	1	2	2	2	2	0	1	2	2	1	2	1	2	2	2	2	2	1	1	1	2	1	2	2	1	1	1	2	2	2	2	2	1	1	1	2	2	1	1	1	2	2	1	2	1	2	2	0	2	1	1	1	1	2	2	0	2	1	0	1	2	2	1	2	2	0	1	1	1	1	2	0	0	2	2	2	2	2	1	2	1	2	1	1	2	1	1	1	2	0	2	0	0	2	1	0	1	0	2	2	2	2	2	1	2	1	
MSKCC_standard_080606	Amplification Peak 6	7q36.1 	chr7:152049166-152162095(probes 96985:96991)	chr7:152069872-152135222(probes 96987:96989)	chr7:1-158620918(probes 85724:97517)           	2.3192e-77	 1.9855e-10	broad	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	1	1	0	1	0	0	1	1	1	1	1	0	1	1	1	0	1	1	1	2	0	1	1	0	0	1	1	1	1	0	0	1	0	0	1	1	1	1	1	1	2	0	1	1	1	1	1	1	0	1	1	1	1	0	2	1	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	0	1	0	0	1	1	0	1	1	1	1	1	0	1	1	0	0	1	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	0	1	0	1	1	1	1	1	0	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	0	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	0	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	1	1	1	0	1	0	1	1	1	0	0	1	1	1	
MSKCC_standard_080606	Amplification Peak 7	12q14.1	chr12:56373677-56466133(probes 140659:140661)	chr12:56373677-56455215(probes 140659:140660)	chr12:55962882-57130046(probes 140595:140691)	2.7063e-31	 2.7063e-31	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	1	2	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	2	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	2	2	0	0	1	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	2	2	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	2	0	2	0	0	0	2	2	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	
MSKCC_standard_080606	Amplification Peak 8	12q15  	chr12:67445318-67565839(probes 141378:141384)	chr12:67445318-67543829(probes 141378:141383)	chr12:67315875-68256638(probes 141361:141437)	3.1946e-22	 6.3353e-17	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	2	1	0	0	0	2	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	2	2	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	1	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	2	0	0	2	0	2	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	
MSKCC_standard_080606	Amplification Peak 9	19p12  	chr19:20099548-20792988(probes 186723:186743)	chr19:20120130-20575841(probes 186724:186736)	chr19:1-63558787(probes 184525:189802)         	2.2301e-17	 2.2301e-17	broad	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	1	1	0	0	0	1	1	1	1	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	1	0	1	0	0	1	1	0	1	1	1	1	1	1	0	1	0	0	0	1	0	1	0	1	0	1	1	1	1	1	1	1	1	1	0	0	1	1	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	1	1	1	1	0	0	0	0	1	0	1	1	0	1	1	1	0	1	1	0	1	1	0	0	0	0	0	1	1	0	0	0	1	1	0	1	0	0	1	1	0	0	0	1	0	1	1	0	1	0	0	0	1	0	0	0	1	0	1	1	0	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	1	1	1	1	0	1	0	0	1	0	0	0	0	1	1	1	0	0	0	0	0	
MSKCC_standard_080606	Amplification Peak 10	20p11.1	chr20:25680496-26023783(probes 191862:191865)	chr20:25680496-26023783(probes 191862:191865)	chr20:1-62369651(probes 189804:194855)          	4.5734e-16	 4.5735e-16	broad	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	1	1	1	1	0	0	1	0	0	0	0	0	1	1	0	1	0	0	1	0	1	1	1	0	0	0	1	1	0	0	1	0	0	0	1	1	0	1	0	1	0	0	0	1	0	1	1	0	1	2	0	0	1	1	0	0	1	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	1	1	1	0	0	0	0	1	0	0	0	0	0	1	1	1	1	1	0	1	1	1	0	0	1	1	1	0	1	1	1	1	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	1	1	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	1	0	0	0	0	0	1	1	0	1	1	0	1	0	0	0	0	0	1	1	0	0	0	0	0	
MSKCC_standard_080606	Deletion Peak 1	1p36.23 	chr1:7913015-8010806(probes 368:377)            	chr1:7920359-7932036(probes 369:369)            	chr1:3987229-9796288(probes 149:538)            	9.607e-05	  9.6071e-05	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	1	1	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	1	1	0	0	2	0	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	1	1	0	0	1	0	0	1	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	
MSKCC_standard_080606	Deletion Peak 2	6q26    	chr6:163809836-164079632(probes 85274:85286)	chr6:163809836-164016426(probes 85274:85282)	chr6:106888655-170737898(probes 81056:85722)	1.1183e-07	  1.1183e-07	broad	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	1	1	0	0	0	0	1	0	1	1	0	0	1	1	0	0	0	0	0	1	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	1	0	0	0	1	0	0	1	0	0	1	1	0	0	0	0	1	0	1	0	1	0	1	1	0	1	0	1	0	0	0	1	1	1	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	1	1	0	0	1	0	0	0	1	0	0	1	0	0	0	1	0	1	0	0	1	0	0	0	0	
MSKCC_standard_080606	Deletion Peak 3	9p21.3  	chr9:21957549-21980521(probes 108760:108761)  	chr9:21968347-21980521(probes 108761:108761)  	chr9:1-70233134(probes 107167:109910)           	3.155e-298	 3.1558e-298	both	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	2	0	1	2	1	0	2	2	2	1	2	2	0	0	2	0	0	1	2	2	0	2	0	2	2	0	1	0	1	1	0	2	2	0	1	2	0	0	0	1	1	0	1	2	0	2	1	0	2	2	1	1	0	1	1	2	1	2	1	1	0	2	2	2	2	2	1	2	1	1	1	0	2	0	0	1	2	2	1	2	2	2	2	0	2	2	2	1	0	0	1	1	2	0	0	0	2	2	0	2	0	0	2	1	0	2	1	1	0	1	2	1	0	2	0	1	1	0	0	2	2	2	0	1	1	0	0	1	0	2	1	2	2	0	2	2	1	1	0	2	1	2	0	1	2	2	2	0	1	1	2	2	2	2	0	1	1	2	2	0	0	0	0	2	1	2	2	2	1	0	2	0	0	1	2	1	2	2	1	2	1	2	2	2	2	2	0	2	2	2	2	0	0	0	1	
MSKCC_standard_080606	Deletion Peak 4	10q23.2 	chr10:89564119-89630077(probes 121715:121720)	chr10:89580502-89600865(probes 121717:121717)	chr10:1-135061899(probes 115606:125570)       	6.3525e-122	 6.3525e-122	broad	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	1	1	1	1	1	1	1	1	1	1	0	0	1	1	0	1	1	1	1	1	2	1	0	1	1	0	1	1	0	0	1	1	0	1	1	1	1	1	0	1	1	1	1	0	1	1	1	1	1	1	1	1	0	1	1	0	1	0	1	0	1	1	1	1	1	1	1	1	0	1	1	1	1	0	0	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	1	1	1	1	2	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	1	0	1	1	1	1	0	1	1	1	1	0	2	1	1	2	2	1	1	0	1	1	2	1	1	0	0	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	0	0	1	1	1	1	0	1	1	1	2	1	1	1	1	
MSKCC_standard_080606	Deletion Peak 5	13q21.1 	chr13:53681444-55220428(probes 149510:149565)	chr13:54134223-54222107(probes 149529:149529)	chr13:1-113964306(probes 146232:153473)     	3.6675e-23	  3.6674e-23	broad	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	0	1	1	1	1	0	0	0	0	0	1	0	1	0	1	1	1	0	0	1	0	0	0	0	1	1	1	0	0	0	1	1	1	0	0	0	1	1	0	0	0	0	0	0	0	1	0	1	1	0	0	1	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	1	0	1	0	0	1	1	0	1	1	0	0	0	1	1	0	0	0	0	0	0	1	0	1	0	1	1	0	1	0	1	1	1	1	0	0	0	0	0	0	1	0	1	1	0	0	1	0	1	0	1	1	1	1	0	0	0	0	1	1	1	1	0	0	0	0	0	1	0	1	0	1	1	0	0	0	0	0	1	0	0	0	1	1	1	1	0	0	1	0	1	0	1	1	1	0	0	1	0	1	1	0	1	1	1	1	1	0	1	0	0	0	0	0	0	1	0	0	1	1	
MSKCC_standard_080606	Deletion Peak 6	14q24.2 	chr14:71578381-72074097(probes 157813:157869)	chr14:71578381-71660451(probes 157813:157821)	chr14:1-103043791(probes 153475:160165)     	2.4905e-09	  2.4905e-09	broad	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	1	0	1	1	0	0	1	0	0	1	1	1	0	0	0	1	0	0	1	0	0	1	1	0	0	1	0	1	1	0	0	1	0	0	1	0	0	1	0	0	0	1	0	0	1	0	1	0	1	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0	0	1	1	0	1	1	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	1	1	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	1	1	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	1	0	0	0	1	0	0	1	0	1	0	0	0	0	1	0	1	1	0	0	0	
MSKCC_standard_080606	Deletion Peak 7	15q14   	chr15:33014042-36901132(probes 160952:161270)	chr15:33750074-34533326(probes 161036:161087)	chr15:32278208-37344162(probes 160903:161301)	0.091695	    0.091695	broad	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	1	0	0	0	1	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	1	0	1	0	0	0	0	0	1	1	0	1	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	
MSKCC_standard_080606	Deletion Peak 8	22q13.31	chr22:44957908-49691432(probes 199983:200012)	chr22:45033749-45348222(probes 199995:200000)	chr22:1-45436221(probes 197849:200011)       	2.3616e-10	  2.3616e-10	broad	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	1	0	1	0	0	1	1	0	0	0	0	1	1	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	1	1	0	0	1	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	1	0	1	0	1	1	1	1	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	1	1	1	0	0	0	0	0	1	0	0	1	1	1	0	1	0	1	1	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	1	0	0	1	0	1	0	0	1	1	0	0	1	0	1	0	0	0	1	1	1	0	0	1	0	1	0	1	0	0	0	0	0	1	1	
MSKCC_standard_080606	Amplification Peak 1 - log2 ratios	1q32.1 	chr1:202596724-202801981(probes 13971:13986)	chr1:202658777-202692536(probes 13974:13975)	chr1:201332880-203776980(probes 13841:14078)	5.2571e-14	 5.2571e-14	focal	Actual Log2 Ratio Given	0.1728	0.0087	1.479	0.0016	0.0696	0.0227	0.4472	2.7729e-05	-0.0023	-0.0279	0	0.3137	0.0074	0.0121	-0.0017	0.52516	0.0272	0.0115	-0.0072	0.0034	0.0044	0.0031	0.0087	0.0529	0.027112	0.1041	0.0471	0.093107	-0.0094	0	0.0166	0.003	0.0031	-0.0092832	0.0024	1.5013	-0.0232	0	0.0006	-0.0334	0.0051	-0.1104	0.0037	0.0312	-0.0077	0.0005	0.0246	0.0062	0.1246	0.2142	0.0071817	-0.0049	0.4046	0	0.0015	0.0065	-0.096183	0.0132	0.39534	0.4152	0.0155	-0.1429	0.0238	0.0018	0.0176	0.0052	-0.0008	-0.0065843	0.0021206	-0.0025	1.0362	0.0098	0.5325	0.0063	-0.002	0	0.3595	0.4523	0.0081	-0.0315	0	0.014	0.36746	0.0643	-0.0026	-0.0153	-0.0207	-0.0103	0.062	0.0527	-0.001	0.4164	-0.0006	0.0297	0.0119	-0.0038	1.4972	-0.001	0.0006	-0.0056	1.4971	0.2052	0.7152	0.0047	1.5131	0.0045	0.00042634	0.0759	0.37287	-0.0008	0.0119	0.0473	0.015	-0.0004	0.0758	0.2511	-0.0017931	0.4142	0.0514	0.6103	0.0081	0.1707	0.0225	0.028	-0.0019	0.2785	-0.0169	-0.0019	0.1294	-0.0181	0.1081	1.5054	0.040856	0.0017	0.0172	0.0045	-0.0536	0.1047	0.0016	0.0107	-0.0013	-0.0105	0.0066	0.1616	0.07	1.5204	-0.006	0.0418	-0.0152	0.1197	0	0.0111	0.0839	0.0138	0.0091	-0.0048	0	0.0043313	0.0139	0.1498	0.4099	0.0031	0.0071	0.0204	0.0051996	1.5107	0.019	0.0095	-0.0247	0.3916	0.5193	-0.0023539	0.0501	0.0248	-0.1092	-0.0065	-0.0923	-0.011	0	1.4991	0.0137	0.0012	-0.0384	0.0143	-0.0057	-0.128	0.8615	0.0049	-0.0019	0.1693	0.3499	0.0241	-0.034268	0.2199	-0.018	
MSKCC_standard_080606	Amplification Peak 2 - log2 ratios	3q26.33	chr3:182340790-182889728(probes 47573:47597)	chr3:182612380-182775401(probes 47586:47590)	chr3:182168723-183245654(probes 47562:47616)	0.020502	   0.020502	focal	Actual Log2 Ratio Given	0.276	0.0034	0.0007	0.604	-0.73745	0.025812	0.0097	0.0064277	-0.0046	0.5189	-0.0201	0.1286	-0.0008	0.0006	0.031238	0.0089	0.0104	0.0389	0.0065	0.0082	0.0026	0.0149	-0.0051	0.0549	1.4763	0.0149	0.0173	-0.058693	0.0039	0.0053	0.07951	0.019	0.0055	0.016	-0.0002	0.0187	0.15394	-0.0563	0.0205	0.014	-0.0154	-0.135	0.0129	0.0212	0.001	0.0075	0.0004	0.013	-0.0014	0.2487	0.0116	0.00042905	-0.2079	0.0165	0.0031	0.0272	-0.0328	0	-0.044456	-0.0189	0.0031	0.1097	0.036769	0.0022	0.0503	-0.001	0.0009	0.1238	0.093362	-0.0017	0.0022	0.2936	0.0015	0.008	0.0051	-0.003	0.0155	0.0032	-0.0192	0.419	0.0056	0.0402	-0.014458	0	0.0131	0.0004	0.003	0.0313	-0.1361	-0.0423	0.0053	-0.0097	0.0086	-0.0007	0.0084	0.0236	0	0.0242	0.0157	0.0356	0.0071	-0.218	0.0069	0.0489	0.0114	0.0236	-0.034323	0.1318	0.0024692	0.0005	0.0116	0.0236	-0.0105	0.014906	0.0051	0.006	0.010207	0.0009	0.054	-0.0152	0.0127	0.2845	0.0341	0.0401	-0.0056	0.0746	0.0118	-0.0067	0.0157	0.0071	0.0073	0.0115	0.22616	0.072	0.0203	0.0083	-0.2409	0.1194	0.0043	0.0139	-0.025376	0.0044	1.5011	-0.2794	0.2102	-0.0006	0.5031	0.0447	0.3607	0.0026	0.0058	0.4061	-0.0004	-0.2911	0.0115	0.306	0.3209	0	-0.0033	0.0703	0.0202	-0.0173	0.0013	0.0187	0.0066262	0.0034944	0.4276	0.4572	0.0164	0.0055	0.0114	-0.0039539	-0.173	-0.0027	0.476	-0.0064	0.1708	-0.0125	0.003	0.0127	-0.357	0.0169	-0.0022	0.426	-0.0059	0.0267	0.016	0.0893	0.0057	0.0015	0.3747	0.036	1.5433	0.9257	-0.0046	
MSKCC_standard_080606	Amplification Peak 3 - log2 ratios	4q12   	chr4:54498653-54580398(probes 52275:52284)    	chr4:54525205-54546894(probes 52277:52278)    	chr4:52594530-57966958(probes 52109:52535)    	1.2125e-34	 1.2125e-34	focal	Actual Log2 Ratio Given	-0.0427	-0.0057	0.0109	-0.0058	-0.0886	0.0097	1.4384	0.0031277	-0.0041466	0.01	0.0091	1.4834	0	-0.0121	-1e-04	-0.0126	-0.0118	-0.0148	1.0435	-0.0093	0	0.0004	-0.0049	0.0024	-0.0063	-0.0096	-0.1171	0.12416	0.2037	-0.0069	-0.3098	-0.006	0.0004	1.4735	-0.0037	0.003	1.5754	0.2568	1.4316	-0.0362	0.0091	0.008	0.0129	0.0029	-0.0017	-0.0067	0.3988	-0.0114	-0.0227	-0.1037	-0.009	0.0101	0.3959	-0.0141	-0.0039	0.0014	0.028	0.020179	0.012644	-0.0307	-0.013	0.6364	0.4977	0.6244	0.004	-0.0037	-0.0118	0.0134	0.022162	-0.0028	0.0079	-0.0144	-0.0118	0.0047	0	1.446	-0.0046	0.0218	-0.065266	0	1.4859	1.4877	0.0022424	-0.0245	0.0156	0.0106	0	-0.0136	-0.0365	0.0845	0	-0.0156	0.0116	-0.1067	-0.0179	-0.0113	1.4972	-0.0057	0.0129	0.0278	-0.0244	-0.2302	-0.0068	1.3221	-0.009	0.001	0.0073	0.672	0.011369	0.0066	0.393	0.8232	1.4927	-0.0051	-0.0263	1.5517	0.0068069	0.2576	-0.0169	-0.0022	0.0068	-0.0199	-0.008	0.324	-0.0033	0.6758	-0.0114	0.0028	-0.0088	-0.0037	-0.0442	1.3508	1.3982	-0.003	1.4887	-0.0061	1.4709	-0.0084	-0.0251	1.4791	-0.022	-0.0076	1.5011	0.1451	1.5318	0.7487	-0.0002	-0.2939	-0.006	-0.0937	-0.0029	-0.0178	0.0097	0.2797	-0.01	-0.0027	-0.0051	1.4959	-0.0006	-0.0183	-0.0014	-0.0039	-0.0116	-0.0129	0.0087262	0.0046	-0.0092	-0.016	0.6133	-0.0135	-0.0104	0.0092461	-0.2195	0.5607	0	0.00053794	0.1798	0.0057	0.0036	0.0556	0.3421	-0.0036	0.0047	-0.0038	-0.0016	-0.1315	1.5006	-0.4974	-0.0083	0.156	-0.0079	0.376	-0.011868	-0.1575	-0.0032	
MSKCC_standard_080606	Amplification Peak 4 - log2 ratios	7p22.3 	chr7:1-1815583(probes 85724:85857)               	chr7:1-1447234(probes 85724:85810)               	chr7:1-158620918(probes 85724:97517)           	5.2849e-69	   0.027939	broad	Actual Log2 Ratio Given	0.7722	0.4961	0.8365	0.46458	0.0535	-0.83032	0.028	0.43093	0.384	0.44951	0.3762	0.0367	0.224	-0.0207	0.26903	0.0038	0.2485	0.3221	0.4837	0.4448	0.0056	0.5178	0.448	0.0075	0.0043	0.2415	0.5614	0.25301	0.2402	-0.0046	0.0238	0.3372	0.0046	-0.0117	0.3698	0.40627	0.3658	0.5389	0.2962	0.0088	-0.0246	0.038868	0.2903	0.4855	0.437	0.3997	0.4237	0.47737	-0.0009	0.5243	0.1707	0.30804	0.3987	0.0125	0.3546	0.50104	-0.2411	0.5153	0.73927	0.42965	0.7229	0.1437	0.251	0.5013	0.4406	0.8693	0.0106	0.4337	0.26906	0.3308	0.3647	0.2543	0.4896	0.3069	0.0234	0.0117	-0.0003	0.4871	-0.119	0.3999	0.3458	0.4056	0.35324	0.1539	0.4478	0.5333	0.4961	0.0432	0.0626	0.3824	0.1742	0.7581	0.5693	0.4214	0.0403	0.1151	0.4057	0.486	0.1887	0.539	0.7472	0.2254	0.0023	0.3194	0.3946	0.0156	0.3595	0.0674	0.36077	0.3328	0.3998	0.5031	0.4322	0.417	0.3714	0.5339	0.17911	0.4571	1.0671	0.49116	0.0025	0.3405	0.1405	0.3413	0.3301	0.5618	0.3984	0.2844	0.6837	0.4128	0.2681	0.4026	0.49216	0.6732	0.3816	0.0056	-0.1221	0.5557	0.3874	0.8003	0.2717	0.4065	0.93171	0.4202	-0.1883	0.70579	0.49837	0.0529	0.49898	0.3149	0.3986	0.4045	0.4021	0.0249	0.0151	0.3188	0.2822	0.3213	0.4047	0.4459	-0.60066	0.0149	0.5539	0.6153	0.37263	0.4365	0.4173	0.4003	0.2457	0.2176	0.4678	0.36205	0.425	0.2737	0.276	0.27034	0.6074	0.452	0.0066	-0.0451	-0.3511	0.0199	0.4248	0.4305	0.045543	0.3035	0.0111	0.4987	0.731	0.4125	0.0111	0.1155	0.42443	0.4114	0.32351	
MSKCC_standard_080606	Amplification Peak 5 - log2 ratios	7p11.2 	chr7:54892258-55065093(probes 89821:89827)    	chr7:54892258-55044147(probes 89821:89824)    	chr7:1-158620918(probes 85724:97517)           	6.1591e-279	 6.159e-279	both	Actual Log2 Ratio Given	0.7722	1.5015	0.84884	1.505	0.0771	0.0159	0.0003	0.40843	1.4917	1.5076	1.5	0.0138	0.1773	-0.0207	0.3129	0.0038	0.2601	0.3006	0.4988	1.4876	0.0034	1.4879	1.5073	0.0018	1.4763	0.24968	0.5998	0.22621	0.2471	0.0117	0.0238	1.4985	1.4894	0.2958	0.3698	1.5013	0.375	0.5389	0.2884	-0.0053	1.4854	0.038868	0.2903	0.5042	0.41031	1.5019	0.3924	1.5076	-0.0251	1.5207	0.1813	0.2967	0.3987	0	0.3482	1.4942	0.0206	1.5032	0.74474	1.5016	0.7229	0.2157	1.5133	1.4985	1.5133	1.5063	0.2347	0.4363	0.28776	0.32599	0.3652	0.2782	1.4829	0.2949	0.0234	-0.002268	1.4958	1.4926	0.0503	1.1741	0.3404	0.4056	1.4937	0.1475	1.4936	1.5269	1.4942	1.5294	0.08	0.3898	1.4867	1.5138	1.5038	1.4983	0.0672	0.1358	1.4972	1.5012	0.1887	1.494	0.7374	1.5073	1.4987	1.0009	1.5131	1.5092	0.3528	0.1926	0.37057	1.4949	0.3948	1.5078	1.2723	0.4027	0.3714	0.5409	1.5112	1.5037	1.0366	1.5195	1.5096	0.3405	0.1405	0.3684	1.1808	1.5316	0.397	0.28936	0.6752	1.5052	1.4933	0.3973	1.5432	0.66317	1.4887	1.4652	-0.10998	1.5018	0.3874	0.4721	0.2396	0.4347	1.5011	1.6048	-0.2355	1.5204	0.47158	0.0464	0.4846	1.5324	1.5115	0.4193	1.498	1.4735	0.0126	0.3188	0.3134	0.3727	0.4047	1.4944	0.015435	0.0149	1.5474	1.4902	1.5157	1.5107	1.5078	0.4065	1.3756	0.212	1.5404	0.40395	0.7489	1.162	0.276	0.29773	0.59769	1.4999	0.0070857	1.4991	-0.35	-0.7588	1.5265	0.4305	0.0663	0.2993	-0.001	1.4589	1.5157	1.5583	1.4947	1.5089	0.42443	1.5111	0.3321	
MSKCC_standard_080606	Amplification Peak 6 - log2 ratios	7q36.1 	chr7:152049166-152162095(probes 96985:96991)	chr7:152069872-152135222(probes 96987:96989)	chr7:1-158620918(probes 85724:97517)           	2.3192e-77	 1.9855e-10	broad	Actual Log2 Ratio Given	0.7363	0.5187	0.0062	0.4869	0.0462	-0.023	0.441	0.40453	0.433	0.47204	0.4233	-0.3148	0.3409	0.3581	0.3016	-0.0207	0.2245	0.3188	0.867	1.0406	0.0034	0.4628	0.5237	-0.0117	0.0105	0.2148	0.5769	0.20581	0.2262	-0.0252	0.0132	0.3562	0.0062	0	0.3764	0.3866	0.354	0.5389	0.2627	0.8968	1.4854	0.0117	0.2598	0.4677	0.3764	0.397	0.4161	0.4767	-0.6431	0.8331	0.1518	0.2867	0.3936	-0.024	1.0551	0.4738	0.4851	0.4988	0.69234	0.4828	0.7142	0.20898	0.5387	0.5028	0.4708	0.8674	1.4813	0.3923	0.25556	0.3463	0.5531	0.2639	-0.0088	0.2988	0.0121	-0.0183	0.3935	0.482	0.041	0.39	0.3298	0.3928	0.37764	0.1223	-0.0393	0.515	0.4714	0.0208	0.0242	0.2131	0.1733	0.6413	0.5333	0.4024	0.2263	0.1358	0.3967	0.463	0.1799	0.4974	1.2887	0.2378	0.35	0.3287	0.4483	-0.0005	0.3552	0.0837	0.37567	0.3134	0.1568	0.4786	0.4627	-0.0169	0.3714	0.7796	0.19011	0.461	0.6432	0.4715	0.4514	0.346	0.1018	0.3201	0.351	0.5245	0.397	0.2768	0.6573	0.4039	0.2499	0.3933	0.47986	0.2364	0.376	-0.0174	0.3235	0.547	0.3748	0.4913	0.2364	0.41884	0.1599	0.5194	-0.2366	0.7099	0.4609	0.015	0.4733	0.302	0.3888	0.3902	0.46153	0.0261	0.0092	0.3074	0.3187	0.3845	0.4222	0.3868	-0.0095772	-0.0285	0.484	0.55111	0.35313	0.4227	0.7294	0.3963	0.3029	0.1899	0.4882	0.36265	0.4285	0.2926	0.2781	0.2998	0.182	-0.0099	0.0055	-0.0173	-0.3704	0.4539	0.6901	0.4671	0.0571	0.2974	-0.0049	0.2412	0.776	0.43954	-0.0079	0.0487	0.42443	0.3483	0.3321	
MSKCC_standard_080606	Amplification Peak 7 - log2 ratios	12q14.1	chr12:56373677-56466133(probes 140659:140661)	chr12:56373677-56455215(probes 140659:140660)	chr12:55962882-57130046(probes 140595:140691)	2.7063e-31	 2.7063e-31	focal	Actual Log2 Ratio Given	0.2649	1.5015	0.0021	0.014853	0.066	0.0218	0.0029	0.17483	0.0047	0.01	0.006	0.5754	-0.0007	-0.0122	0.0115	0.0099	-0.0065	-0.0941	0.0056398	0.0123	-0.0873	0.0055	1.5073	-0.0108	-0.0502	0.0109	0.3293	-0.21949	0.0161	0.014	1.4774	0.0121	0	0.0064	0.3782	-0.29788	1.5754	-0.4313	-0.0054	0.0009	0.0057	-0.3549	0.020651	0.021	-0.2842	0.0046	1.328	1.5076	0.0181	-0.0393	0.7958	0	-0.2024	0.0076	0.0083	0.0139	0	-0.0056	1.5278	-0.0043	0.5082	0	-0.0009	0.0018	0.004	0.0006	-0.0009	0.1325	0.0089617	0.0023	0.021744	1.5086	0.0013	-0.006	0.0103	0.0068	0.0077	0.0028	-0.0311	-0.4329	0.0024	-0.0035	0.0055571	-0.0019	0.0136	0.0106	0.0101	0.0231	1.5039	0	0.0025	0.0067	0.0151	1.4983	0.01702	0.0309	0.0192	1.5012	-0.1151	0.0308	-0.149	0.019958	-0.0055	0.058	1.5131	0.004	0.0931	0.0199	-0.0087299	0.0189	0.0045	1.5078	1.4927	0.0225	0	1.5517	0	1.5037	-0.41634	0.0011054	-0.0119	0.0258	0.0278	-0.1581	0.0022	-0.0526	-0.3367	0.0031	0.0061	0.0034	1.4933	-0.0127	-0.073375	-0.0277	0.0264	0.3874	1.4709	-0.25	1.5127	0.0102	-0.0011	0.0011	1.5011	1.6048	-0.1345	0.6556	0.0002	-0.2932	-0.0323	-0.0118	0.0112	0.0086	0.01	0.3203	0.033	0.012	0.0082	0.0044	0.0078	-0.0857	0.0303	0.0254	0.0274	0.026	0.018485	0.0095	0.0186	0.0151	0.0183	0.0018	0.028	1.2066	-0.211	0.0192	0.0222	0.004	-0.0798	-0.0077	0.0033	-0.2725	0.0167	0.0015	0.4716	0.0009	0.0015	-0.1243	0.0138	0.0095	0.0016	0	-0.0452	-0.0421	1.5433	-0.248	0.0262	
MSKCC_standard_080606	Amplification Peak 8 - log2 ratios	12q15  	chr12:67445318-67565839(probes 141378:141384)	chr12:67445318-67543829(probes 141378:141383)	chr12:67315875-68256638(probes 141361:141437)	3.1946e-22	 6.3353e-17	focal	Actual Log2 Ratio Given	0.2649	0.0005	0.0021	0.0051	0.066	0.0218	0.0029	-0.0031723	0.0047	0.01	0.006	0.5754	-0.0007	-0.0122	0.017314	0.0099	-0.0065	-0.0941	0.0056398	0.0123	1.4615	0.0055	0.0057498	-0.0108	-0.0502	1.5008	0.3293	-0.21949	0.0161	0.014	1.4774	0.0121	0	0.0064	0.3782	1.5013	0.0969	-0.4313	-0.0054	0.0009	0.0057	-0.3549	0.0133	0.021	-0.2842	0.0046	1.4593	1.5076	0.0181	-0.0393	0.2188	0	-0.2024	0.0076	0.0083	0.0139	0	-0.0056	-0.65856	-0.0043	0.5082	0	-0.0009	0.0018	0.004	0.0006	1.4813	0.1325	0.0089617	0.0023	1.5001	0.0091	0.0013	1.5021	0.0103	0.0068	0.0077	0.0028	-0.0311	-0.0263	0.0024	-0.0035	0.0055571	-0.0019	0.0136	0.0106	0.0101	0.0231	0.008	0	0.0025	0.0067	0.0151	1.4983	0.01702	0.0309	0.0192	0.0263	-0.1151	0.0308	-0.149	1.5073	-0.0055	0.058	-0.0035	0.004	0.0931	0.0199	0	0.0189	0.0045	1.5078	1.4927	0.0225	-0.0047	1.5517	0	1.5037	-0.41634	0.0011054	1.5096	0.0258	0.0278	-0.1581	0.0022	-0.0526	-0.3367	0.0031	0.0061	0.0034	1.4933	-0.0127	-0.073375	-0.0277	1.3982	0.0053	-0.0861	-0.25	0.0012	0.0102	-0.0011	0.0011	-0.0115	0.1777	-0.1345	0.0076	0.0002	-0.2932	-0.0323	-0.0118	0.0112	1.518	0.01	0.3203	0.033	0.012	0.0082	0.0054	0.0078	-0.0874	0.0303	0.0254	0.0274	0.026	0.018485	0.0095	0.0186	0.0151	0.0183	0.0018	0.028	0.028146	-0.211	0.0192	0.0222	0.004	-0.0798	-0.0077	0.0033	-0.2725	0.0167	0.0015	0.0032	0.0009	0.0015	-0.1243	0.0138	0.0095	0.0016	0	-0.0452	1.5089	0.022732	-0.248	0.0262	
MSKCC_standard_080606	Amplification Peak 9 - log2 ratios	19p12  	chr19:20099548-20792988(probes 186723:186743)	chr19:20120130-20575841(probes 186724:186736)	chr19:1-63558787(probes 184525:189802)         	2.2301e-17	 2.2301e-17	broad	Actual Log2 Ratio Given	0.0414	-0.0424	0.4228	0.5147	0.0927	-0.016	-0.0665	0.35403	0.3251	0.4613	0.3556	0.051442	0.0412	-0.0543	0.0172	0.0427	0.0245	-0.03	0.4614	0.4217	-0.0082	0.4585	-0.0018	-0.0179	0.0019	0.0276	0.1717	-0.0072927	0.1759	0.0319	-0.0041	0.3771	0.3239	0.0369	0.3194	0.4318	0.1698	0.4863	0.1208	0.3838	0.0506	0.1223	0.0505	0.0698	0.0145	0.3324	-0.055	0.506	-0.017895	0.158	0.048	0.2473	0.3708	0.4428	0.2354	0.4986	0.3797	0.3706	0.56034	0.4046	0.0047	-0.1087	0.2875	0.4226	0.7333	-0.036	-0.0152	-0.0053	-0.023338	0.0054	-0.0677	0.003	0.4654	-0.01	0.0059	-0.054999	-0.0424	0.3879	-0.0368	-0.028537	-0.043309	-0.0021	-0.034958	-0.0815	0.4437	0.5416	0.4911	0.3544	0.1176	-0.009608	0.00036886	0.0251	0.5322	0	0.1417	0.1814	0.0488	0.4928	0.125	0.4254	-0.0302	0.4531	0.2994	-0.0312	0.4209	0.3957	0.0696	0.0258	0.0069692	0.0223	0.0023	0.1595	0.3037	0.0013	0.0192	0.1058	0.19501	0.4775	0.006	0.4093	-0.0531	-0.0468	0.1483	0.3988	0.0025	0.0844	0.0099	0.2386	0.0996	0.3629	0.2332	0.0143	0.34636	-0.025	-0.0426	-0.0118	0.3002	0	0.0336	-0.0171	0.2356	-0.0068	0.3647	0.306	0	0.0004	-0.0073	-0.0011	0.0174	0.2617	0.0183	0.0672	0.0056	0.26	0.116	0.1217	0.0544	0.3502	0.028154	-0.3552	0.1202	0.1041	0.3861	0.07	0.38173	0.0075	-0.0361	0.0403	0.077	0.03	0.5145	0.084246	0.0999	0.0623	0.1206	0.2672	0.3415	0.3291	-0.0141	0.3965	-0.0681	-0.0385	0.4831	-0.0064	-0.0178	0.0204	-0.0109	0.4081	0.3976	0.4056	0.0359	0.0857	0.11463	-0.0144	0.0972	
MSKCC_standard_080606	Amplification Peak 10 - log2 ratios	20p11.1	chr20:25680496-26023783(probes 191862:191865)	chr20:25680496-26023783(probes 191862:191865)	chr20:1-62369651(probes 189804:194855)          	4.5734e-16	 4.5735e-16	broad	Actual Log2 Ratio Given	0.0467	0.0046	0	-0.0084	0.0417	-0.472	0.4817	0.41483	0.2433	0.4763	-0.0037	-0.0134	0.3153	0.0108	-0.0148	-0.0297	0.0371	0.107	0.4653	0.4199	0.0017	0.4733	-0.0084	-0.0151	0.8282	-0.03	0.2812	0.22031	0.2336	0.0008	-0.0745	-0.011057	0.3654	0.4024	-0.002	-0.0152	0.1236	0.0602	-0.0165	0.008	0.4579	0.1797	-0.0095	0.2297	0.018	0.3884	-0.0057	0.0070815	0.0263	0.2223	-0.0091	0.2833	0.4029	-0.0086	0.1339	1.2994	0.0614	-0.044601	0.50174	0.4699	-0.0126	-0.2488	0.3893	0.4817	0.4663	-0.0155	-0.0096	0.0024	-0.017738	0.0154	-0.0299	0.0023	0.4838	-0.0082	0.0037	-0.0427	-0.01	-0.0264	0.0031	0.1667	-0.0224	-0.0316	-0.018058	0.0429	0.3956	0.5163	0.4684	0.2936	0.0401	0.0933	-0.0042	-0.0273	0.5453	0.0185	0.0077	-0.0077	-0.017	-0.0177	0.1584	0.5193	0.4176	0.362	0.3835	0.0116	0.2749	0.4333	0.3436	-0.063697	0.0092692	0.3244	0.3893	0.3981	0.0241	0.3874	0.214	0.1551	0.22301	0.5105	0.0052	0.4625	-0.0221	-0.1335	0.1011	0	0.0007	0.3049	0.0255	-0.0213	0.3052	-0.004	0.2125	0.0031	0.42636	-0.0135	-0.0203	-0.0087	-0.0014	0.0692	-0.004	-0.0106	-0.0011	0.4306	0.4921	0.2544	0.1847	0.0009	-0.013538	-0.3055	0.0522	0.2923	0.0121	0.0002	-0.0108	0.3268	-0.0394	-0.0031	-0.004	-0.0201	-0.0007	0.0188	0.0107	0.0033	0.2763	-0.0643	0.35783	0.4181	-0.0018	-0.0042	0.0072	0.0004	0.4378	-0.022354	0.0175	0.0534	0.045675	-0.003	0.1643	0.4544	-0.0095	0.4231	0.2833	-0.0099	0.4777	-0.0002	-0.0059	-0.0198	-0.0048	-0.0084	0.4469	0.4453	0.0157	0	0.013432	0.0142	0.0091	
MSKCC_standard_080606	Deletion Peak 1 - log2 ratios	1p36.23 	chr1:7913015-8010806(probes 368:377)            	chr1:7920359-7932036(probes 369:369)            	chr1:3987229-9796288(probes 149:538)            	9.607e-05	  9.6071e-05	focal	Actual Log2 Ratio Given	0.1947	-0.0081	-0.0317	-0.0002	-0.1015	-0.0229	-0.0317	-0.0087723	0.0217	-0.0257	-0.5842	-0.2998	0.1945	-0.0068	-0.0036	-0.81764	0.0439	-0.0161	-0.0282	-0.0439	-0.0164	-0.0089	-0.008	-0.00058036	0.0357	0.125	-0.0113	0.11841	-0.0094	0.0094	0.0132	-0.4428	-0.5327	-0.3921	0.0024	-0.005	0.009	-0.0143	0.018	-0.0334	0.0243	0.0529	0.05	0.0389	0.0055	-0.0199	-0.0037	-0.0107	0.0681	-0.5562	0.0108	-0.0423	0.3825	0.0059	-0.4715	0.0017	-0.0382	-0.0898	0.28084	0.283	0.0005	-0.2555	-0.5567	-0.0712	-1.4867	-0.0337	-0.0092	-0.0333	-0.064838	0.0119	0.0291	0.2567	-0.7603	-0.0049	-0.0169	-0.0394	-0.0365	-0.0743	-0.1484	-0.035	-0.0097	-0.5582	0.31614	0.0649	-0.0385	-0.0268	0.0148	0.0236	0.064	0.0734	-0.1747	0.4101	-0.94219	0.0152	0.049422	0.0337	0.0109	-0.0232	-0.0574	-0.0171	-0.0147	0.2164	-0.0203	0.0175	0.0048	-0.38454	-0.4794	-0.4	-0.50223	-0.4162	-0.5014	0.0516	-0.0322	-1.5146	0.066	0.2059	-0.042593	-0.0043	-0.4303	-0.0671	0.4217	0.1184	0.0288	-0.348	0.0043	-0.2468	-0.0417	-0.0458	0.1833	-0.0955	0.2376	0.0139	-0.039644	-0.0002	-0.0268	-0.5218	0.0022	0.1047	0.0124	0.005	0	-0.0132	0.0105	-0.0525	0.0771	0.0038	-0.0103	0.0102	0.0682	0.0046	0.0085	0.019	-0.3584	-0.0249	-0.7272	-0.3631	-0.409	-0.0101	-0.0006	0.2242	0.3373	0.045	0.0386	-0.5299	-0.017674	-0.0004	-0.0119	0.0173	0.0061	0.0183	-1.4596	0.023646	-0.4515	-0.317	-0.1177	-0.0126	-0.8564	-0.1122	-0.0215	-0.7544	-0.063	-0.0395	-0.8623	-0.6492	-0.0171	-0.1181	-0.0098	-0.04	-0.0478	-0.7259	0.042	0.0528	0.018532	0.2855	0.049	
MSKCC_standard_080606	Deletion Peak 2 - log2 ratios	6q26    	chr6:163809836-164079632(probes 85274:85286)	chr6:163809836-164016426(probes 85274:85282)	chr6:106888655-170737898(probes 81056:85722)	1.1183e-07	  1.1183e-07	broad	Actual Log2 Ratio Given	-0.0481	-0.7194	-0.814	0.0029	0.0618	0.0415	-0.0057	-0.68077	0.0029	-0.7729	-0.4605	-0.0363	0.0252	-0.1329	-0.6012	0	-0.017777	0.0259	-0.0024	0.0048	-0.4758	-0.0318	0.0004	0.0001	-0.3005	0.0748	-0.0185	0.067007	-0.3068	-0.72	-0.078212	0.0058	-0.002	0.2697	0.0057097	-0.054	-0.1904	0.1027	-0.0123	-0.0891	0	0.0172	-0.0563	-0.3833	-0.0024	-0.582	0.0186	-0.0026	-0.0056	-0.4609	0.0051	0.0072	-0.2062	0.0023	-0.1182	-0.811	-0.7765	0.0121	0.0012442	0.0238	0.0053	-0.1752	0	-0.8014	0.0169	-0.7891	0.0064	-0.4864	-0.22764	0.0085038	-0.438	0.0143	-0.7977	0.0072	-0.0015888	0.0253	-0.721	-0.5564	-0.7612	-0.0447	0.0085	0	-0.021558	-0.0512	-0.0292	-1.0332	0.0041	0.0009	-0.025	-0.2432	0.0002	-0.026	0.0087	-0.1541	-0.0021	-0.0956	0.0052	0.0025	-0.0296	0.0222	0.015	0.0198	0.0578	0.0571	0.0017	0.0017	0.0096	-0.2855	0.025869	0.0017	0.0021	-0.0431	0.0027	0.0069	-0.0065	0.1517	-0.28439	-0.0135	-0.3633	-0.7758	-0.6872	0.0296	-0.0048	-0.014	0.0022	-0.0006	0.0345	0.0049	-0.0084	0.0042	-0.631	-0.0121	-0.017044	0.011	-0.5007	-0.0181	0.0076	0.0847	0.0004	0.0067	0.0036	0.006	-0.7329	0	0.199	0.0002	0.0079	0.0516	-0.1584	-0.0021	-0.0473	-0.0044	0.0081	-1.0148	-0.031038	-0.0393	-0.0121	0.0032	0.001	-0.0044	-0.0852	-0.0013	-0.0613	-0.0657	-0.56387	0.0065	-0.7106	-0.0125	-0.0199	0.2072	-0.7805	-0.17435	0.0484	0.0048	-1.0277	0.0031	-0.081	0.0172	-0.3277	-0.0005	0.3364	-0.7326	0.0104	-0.0134	-0.0039	-0.1266	0.0056	-0.4931	0.0032	0.0055	-0.5705	-0.0858	-0.022668	0.107	-0.007	
MSKCC_standard_080606	Deletion Peak 3 - log2 ratios	9p21.3  	chr9:21957549-21980521(probes 108760:108761)  	chr9:21968347-21980521(probes 108761:108761)  	chr9:1-70233134(probes 107167:109910)           	3.155e-298	 3.1558e-298	both	Actual Log2 Ratio Given	-1.3339	-0.0056	-0.8364	-1.495	-0.8135	0.5462	-1.5616	-1.5255	-1.5083	-1.273	-1.5	-1.5166	0.1745	0.0331	-1.5175	-0.0027	0.0216	-0.8712	-1.4845	-1.5124	0.0024	-1.5121	0	-1.5021	-1.5237	0.1022	-0.6061	0.028507	-0.5959	-0.2275	-0.0066	-1.4011	-1.4211	0.3159	-0.49385	-1.4987	0.116	-0.0004	0.0182	-0.4671	-0.7981	0.0033	-0.8396	-1.3968	0.0007	-1.4981	-0.5819	0.0044	-1.5289	-1.4793	-0.1761	-0.947	0	-0.832	-1.1652	-1.5058	-1.0923	-1.4968	-0.19976	-1.0783	0.001	-1.4395	-1.3485	-1.5015	-1.4867	-1.4937	-0.396	-1.4874	-0.83124	-1.0705	-0.4631	0.2417	-1.5171	-0.0007	-0.0021	-0.8295	-1.5042	-1.5074	-0.7521	-1.4936	-1.5141	-1.5123	-1.4021	0.0424	-1.5064	-1.4731	-1.5058	-0.92649	-0.1171	0.0459	-0.4059	-1.1598	-1.4962	0.0204	-0.0175	-0.1071	-1.5028	-1.4988	0.0128	-1.506	0.0255	0.0235	-1.5013	-1.1337	-0.0032	-1.4908	-1.1574	-0.9416	-0.0088308	-1.0904	-1.4611	-0.8691	-0.02	-1.5146	-0.0145	-0.5222	-0.54869	0.0225	0.0459	-1.4805	-1.4904	-1.565	-0.0064	-0.5822	-1.068	0.2123	0.0365	-0.8225	0.0201	-1.4948	-0.1479	-1.4946	-1.4568	-0.0075	-1.3701	-1.3342	-0.6438	-0.636	0.0035	-1.5209	-0.9668	-1.4918	-0.0502	-0.2551	-1.4682	-1.4796	-1.4847	0.0384	-1.0479	-0.4162	-1.4885	-1.482	-1.502	-1.5265	-0.0022	-1.0124	-1.1776	-1.5041	-1.5201	-0.0139	-0.0067628	0.0144	-0.0012	-1.5098	-0.55137	-1.4893	-1.4922	-1.5065	-0.7558	-1e-04	-1.4596	-0.018954	0.0311	-0.7058	-1.5387	-0.8691	-1.3616	-1.5001	-0.7518	-1.5009	-0.4987	-1.5432	-1.4735	-1.5245	-1.4933	-1.3741	0.0077	-1.5411	-1.4843	-1.4417	-1.5053	0.0126	0.015932	0.0213	-1.1928	
MSKCC_standard_080606	Deletion Peak 4 - log2 ratios	10q23.2 	chr10:89564119-89630077(probes 121715:121720)	chr10:89580502-89600865(probes 121717:121717)	chr10:1-135061899(probes 115606:125570)       	6.3525e-122	 6.3525e-122	broad	Actual Log2 Ratio Given	-0.010142	-0.8261	-0.8203	-0.8016	-0.8031	-0.4926	-0.836	-0.65497	-0.6316	-0.77735	-0.6078	0.0183	-0.0093	-0.3758	-0.4032	0.0063	-0.30521	-0.9332	-0.762	-0.6938	-1.1607	-1.5121	-0.8133	-0.0074	-0.73267	-0.6004	-0.1099	-0.28649	-0.2779	0.3125	0	-0.51949	-0.5383	-0.0129	-0.5305	-0.5988	-0.7762	-0.4463	-0.3386	0.0907	-0.8016	-0.1576	-0.3544	-0.332	0.0069	-0.56191	-0.597	-0.78658	-0.7329	-0.527	-0.1776	-0.3262	-0.2094	-0.0067	-0.1972	-0.7791	-0.1017	-0.8113	-0.051156	-0.786	-0.0155	-0.6047	-0.5361	-0.7992	-0.72439	-0.77262	-0.32285	-0.573	-0.35024	-0.0016	-0.47912	-0.31569	-0.7611	-0.414	-0.0313	-0.0005	-0.6901	-0.757	-0.0794	-0.5639	-0.7586	-0.5619	-0.54136	-0.1977	-0.67687	-0.8977	-0.7697	-0.3964	-0.2582	-0.2557	-0.1923	-0.4958	-0.934	-0.5694	-0.0354	-0.090737	-0.5935	-0.7371	-0.192	-0.8831	-1.5029	-0.5347	-0.563	-0.3449	-0.7147	-0.6829	-0.4844	-0.3309	-0.50553	-0.4506	-0.5411	-0.7469	-0.6985	-0.6127	-0.036782	-0.5977	-0.27669	-0.7773	-0.4228	-0.7763	-0.70478	-0.4299	-0.1426	-0.447	-0.4255	-0.4859	-0.4069	-0.3739	-0.4667	-0.6049	-0.41	-0.54372	-0.71994	-0.5226	-1.3826	-0.5307	-0.0611	-0.3463	-0.4978	-0.787	-0.4253	-0.0032	-0.731	-0.2908	-0.5726	-0.5821	-0.0071	-1.493	-0.3538	-0.7579	-1.4885	-1.482	-0.6761	-0.3844	-0.034803	-0.4192	-0.4365	-1.5041	-0.6165	-0.5587	-0.054833	0.0097	-0.3679	-0.53478	-0.54189	-0.667	-0.7066	-0.5799	-0.8003	-0.4547	-0.80121	-0.23625	-1.4933	-0.3609	-0.6896	-0.38	-0.4347	-0.7052	-0.8063	-0.7403	-0.0056	-0.0067	-0.84	-0.6577	-0.2023	-0.1294	0	-0.7401	-0.7287	-0.72189	-1.5053	-0.6343	-0.61257	-0.61226	-0.4425	
MSKCC_standard_080606	Deletion Peak 5 - log2 ratios	13q21.1 	chr13:53681444-55220428(probes 149510:149565)	chr13:54134223-54222107(probes 149529:149529)	chr13:1-113964306(probes 146232:153473)     	3.6675e-23	  3.6674e-23	broad	Actual Log2 Ratio Given	-0.5781	-0.0052	-0.81	-0.8577	-0.2304	-0.823	-0.0107	-0.00087227	-0.0584	0.0001	-0.0786	-0.746	-0.01	-0.629	-0.0031	-0.8486	-0.2608	-0.3972	-0.0072	0.004	-0.4757	-0.0398	-0.006	-0.0191	0.0219	-0.5532	-0.3393	-0.29748	-0.0073	-0.0133	-0.0114	-0.5137	-0.2925	-0.44781	-1e-04	0.0058	-0.0859	-0.4221	-0.3463	-0.056995	-0.0013	-0.0608	-0.0098	0.0054	-0.0041	0.0015	-0.5967	0.0109	-0.73175	-0.486	-0.004	0.0037	-0.2094	-0.8254	-0.3873	0.0205	-0.8498	0.0028	-0.0035558	-0.0071	-0.0067	0.1434	-0.0414	0.0006	0	0.0044	-0.322	-0.0732	-0.35554	-0.005	-0.4509	-0.0348	-0.0011	0	-0.0167	-0.8386	0.0056	-0.7479	0.0203	-0.0643	-0.754	-0.3387	0.0033424	-0.1816	-0.676	0.0182	0.0039	-0.012	-0.7124	-0.2596	-0.0244	-0.010567	0.0122	-0.0812	-0.0422	-0.0143	-0.5741	-0.0637	-0.1878	0.0218	-0.5915	-0.2221	0.0009	-0.348	-0.0021	-0.6675	-0.4829	-0.3163	-0.44223	0	-0.0256	-0.0087	0.0118	-0.0092	0.0104	-0.2775	0.0053069	-0.2448	-0.4294	0.0047	0.0074	-0.6167	-0.0196	-0.468	-0.0013	-0.2975	-0.4148	-0.3422	-0.4571	-0.0012	-0.1075	-0.0075	-0.071844	-0.523	-0.3467	-0.5304	-0.5918	0.0071	-0.0626	0.0048	0.0019475	0.004	-0.7725	-0.0018	-0.3559	0.003	-0.7477	-0.7344	-0.0788	-0.0071	-0.0111	-0.0664	-0.0383	-0.3759	-0.0186	-0.0155	-0.0149	-0.548	-0.6123	-0.5607	-0.6845	-0.0237	-0.0109	-0.52227	-0.00037385	-0.6505	-0.0039	-0.6012	-0.3184	-0.4554	-0.0179	-0.0096539	-0.4322	-0.0095	-0.1362	-0.3707	-0.0849	-0.6731	-0.3367	-0.7883	-0.4832	-0.723	0.0042	-0.6829	-0.0063	0.0047	-0.0249	0.0081	0.0064	-0.0002	-0.5504	-0.0432	-0.0070682	-0.5227	-0.4466	
MSKCC_standard_080606	Deletion Peak 6 - log2 ratios	14q24.2 	chr14:71578381-72074097(probes 157813:157869)	chr14:71578381-71660451(probes 157813:157821)	chr14:1-103043791(probes 153475:160165)     	2.4905e-09	  2.4905e-09	broad	Actual Log2 Ratio Given	-0.0117	-0.001	-0.8179	0.0079	-0.7331	-0.8051	0.0137	0.0012231	-0.655	0.0178	-0.0029	-0.7361	-0.2058	-0.3787	-0.0047	0.0123	0.0225	-0.3498	0.0002	-0.0054	-0.4711	-0.0012	0.004	-0.2131	-0.749	0.007	0.0086	-0.27539	-0.0147	-0.6668	-0.6186	0.0017401	0.0021	-0.4004	0.0063	0.0228	-0.6261	0.1207	0.0005	-0.6213	0.0131	-0.0481	-0.0034	-0.3128	0.0068	0.0103	-0.593	0.1366	-0.7249	0.0004	-0.1554	0.0059	-0.1939	0.0086	-0.0073	0.0308	-1.0076	0.0359	-0.11576	-0.0917	0	-0.9753	0.008	-0.0015	0.0005	-0.0045	-0.0086	-0.5592	-0.27134	-0.0008	-0.4668	-0.3037	-0.0006	-0.0017	-0.039235	-0.0384	-0.0109	-0.0011	-0.7474	-0.0035	0.0008	-0.5523	-0.0097576	-0.1989	0.0005	0.0171	0.0046	0.0101	-0.4237	-0.242	0.002	0.0124	-0.0071	-0.5305	0.0127	-0.0778	-0.5776	0.028505	-0.0815	0.0077	0.0162	0.0201	-0.0087	-0.3966	-0.0061	0.0026	-0.0108	-0.3461	6.9185e-05	0.0162	-0.3282	0.0799	0.0064	-0.0205	0.0111	0.0936	0.0036069	0.0131	0.0192	0.0022	-0.0017	-0.5619	0.014861	0.0296	-0.3717	-0.0062	0.0029	0.001	0.0235	-0.0014	0.0148	0	0	-0.0094	-0.5254	-0.5295	-0.1044	0.0338	0.0063261	-0.7765	0.0084	-0.0176	0	-0.2663	-0.5845	-0.5915	0.0075	-0.0007	-0.3439	-0.001	-0.5836	0.0032	-0.0237	0.1289	-0.0019	-0.0099	-9.9998e-05	-0.008866	-0.0129	0.0164	0.0283	0.035	-0.0056	0.0046	-0.0041738	0.0013	-0.0112	0.0014	-0.3153	1e-04	0.0124	-0.23565	0.0104	-0.3411	-0.6531	-0.0054	0.1639	-0.0259	-0.3424	0.2096	-0.0291	-0.7763	0.0039	-0.6732	-0.0344	0.017	0.0014	0.0125	-0.8023	0.0005	-0.5649	-0.54563	0.027232	0.0568	0.0084	
MSKCC_standard_080606	Deletion Peak 7 - log2 ratios	15q14   	chr15:33014042-36901132(probes 160952:161270)	chr15:33750074-34533326(probes 161036:161087)	chr15:32278208-37344162(probes 160903:161301)	0.091695	    0.091695	broad	Actual Log2 Ratio Given	-0.3323	-0.8098	-0.0024	0.0087	-0.012	-0.7989	-0.0542	-0.0064723	-0.6186	0.0063	-0.0135	-0.7235	0.1553	-0.6038	-0.0052	-0.0086	0.0533	-0.3577	-0.002	-0.6751	0.0124	0.0044	0.002	-0.1845	-0.3149	0	-0.0965	0.11441	0.0017	0.0152	0.0017	0.0072	0.0059	-0.0116	0.0055	0.013	-0.1611	0.138	-0.0707	0.0189	0.0148	-0.145	0.0286	0.0225	-0.1279	0.0012	0.0013	0.0177	0.059	0.1265	-0.0182	-0.3842	-0.2054	-0.0284	-0.0955	0.0072	-0.1357	-0.03	-0.050556	-0.0684	-0.0111	-0.3028	-0.0724	-0.0046	-0.0145	-0.0113	-0.3329	-0.1102	-0.043638	0	-0.0282	-0.0512	-0.0002	-0.01	-0.0284	-0.0368	-0.0084	-0.0178	-0.0129	-0.5637	-0.0094	0.0063	-0.020658	0.0386	-0.0067	-0.0479	-0.0031	0.0064	-0.3955	0.105	0.0002	0.0047	-0.0216	0.0083	0.0051	-0.0566	0.0033	0	0.0091	-0.0027	-0.009	0	-0.0024	-0.0216	-0.0014	-0.0007	-0.021	-0.3346	-0.011131	-0.0052	0.0064	-0.0466	-0.0889	-0.0037	-0.0063	-0.7066	0.0067069	-0.0226	-0.0091	-0.011909	-0.0187	-0.1136	0.0097	-0.3891	-0.0003	-0.0074	0.0024	-0.3778	0.0077	0.0082	-0.1016	-0.003	-0.018844	-0.3582	-0.0096	0.001	0.0009	-0.123	-0.5781	-0.0083	0.0016	-0.0074	-0.1397	-0.0407	-0.2423	0	-0.004	0.023	-0.0422	-0.0867	-0.4537	-0.3811	-0.0263	-0.3669	-0.1157	-0.0103	-0.0099	-0.0206	-0.6179	-0.5644	0	-0.5643	0.0103	-0.0015	-0.021674	-0.0025	-0.0203	-0.57871	0.0067	-0.3327	0.0023	-0.0075539	-0.2978	-0.0065	0.062	-0.0048	-0.1048	-0.0156	-0.0093	-0.0194	-0.0337	0.4895	-0.0047	-0.0044	-0.0004	0.0274	-0.0055	-0.7378	-0.0036219	-0.0089	-0.0009	-0.0235	-0.61147	-0.4587	0.0013	
MSKCC_standard_080606	Deletion Peak 8 - log2 ratios	22q13.31	chr22:44957908-49691432(probes 199983:200012)	chr22:45033749-45348222(probes 199995:200000)	chr22:1-45436221(probes 197849:200011)       	2.3616e-10	  2.3616e-10	broad	Actual Log2 Ratio Given	0.0007	-0.0159	-0.8007	-0.0005	-0.1556	-0.085263	-0.0209	-0.17727	-0.5633	-0.0239	-0.0151	0.0621	-0.0121	-0.5838	-0.5726	0.002	0.0004	-0.0422	-0.0667	-0.0398	-0.4801	-0.9178	-0.007	-0.0125	0.0036	-0.0405	-0.1272	0.11751	-0.0816	-0.0148	-0.1247	-0.0151	-0.0059	0.3378	-0.0204	-0.0403	0.1319	-0.1108	-0.3045	-0.0384	0.0148	0.0327	0.0158	-0.3062	0.0129	-0.0171	-0.5772	0.0023	0.0308	0.1406	0.0101	-0.0572	-0.2027	-0.0122	-0.0289	-0.0818	-0.0859	-0.0922	-0.14526	-0.1294	-0.1062	0.1119	-0.0666	-0.079	-0.0723	-0.0516	-0.3213	0.0766	-0.36954	-0.426	-0.0836	-0.0077	-0.73339	-0.0249	-0.0171	-0.0792	-0.0427	-0.7939	-0.0225	-0.01	-0.0377	0.0117	-0.034958	-0.1898	-0.1059	-0.0541	-0.0942	0.0523	0.0409	0.1138	-0.0026	-0.0142	-0.0628	0.0101	0.0014	-0.1375	-0.0275	-0.7638	-0.185	-0.0759	-0.0032	-0.4913	-0.0305	-0.3814	-0.041	-0.6852	-0.487	-0.3538	-0.46823	-0.0774	0.0077	-0.0357	-0.0373	-0.5901	-0.0281	-0.0442	-0.033193	-0.9895	0.0104	-0.7869	-0.0372	-0.5144	-0.0831	0.0391	-0.4062	-0.9173	-0.4164	-0.0448	-0.0174	-0.0114	0.1308	0.0073	-0.81374	-0.0217	-0.05	-0.5229	-0.2702	-0.5927	0.0145	-0.7625	-0.0234	-0.6695	-0.23333	0.1866	-0.4529	-0.0009	-0.0106	-0.0045	0.0536	-0.0008	0.02	-0.1075	-0.7149	-0.3491	-0.0023	0.0332	0.0365	-0.039	0.0146	-0.4647	-0.6205	0.0275	0.0774	-0.517	-0.0089738	-0.7289	-0.0548	0.0193	-0.2781	-0.4219	-0.0953	-0.031454	-0.5942	0.0405	-0.592	-0.012	0.1276	-0.1019	-0.3537	-0.7642	-0.2064	-0.0369	-0.0548	-0.6492	-0.0064	-0.4955	-0.0055	-0.5476	-0.053	-0.033	0.0411	0.029	0.061832	-0.24645	-0.3655	
MSKCC_standard_080606	Amplification Peak  4- Contributing Broad Events	7p	Amplitude values represent median within significant region.	Broad Event Corresponding to Amplification Peak 4	chr7:1-158620918(probes 85724:97517)           	5.2849e-69	   0.027939	broad	0: t<0.12; 1: t>0.12	1	1	0	1	0	0	0	1	1	1	1	0	1	0	1	0	1	1	1	1	0	1	1	0	0	1	1	1	1	0	0	1	0	0	1	1	1	1	1	1	0	0	1	1	1	1	1	1	0	1	1	1	1	0	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	0	0	1	1	0	1	1	1	1	1	0	1	1	0	0	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	0	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	1	1	1	1	1	1	1	0	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	0	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	1	1	0	1	0	1	1	1	0	0	1	1	1	
MSKCC_standard_080606	Amplification Peak  5- Contributing Broad Events	7p	Amplitude values represent median within significant region.	Broad Event Corresponding to Amplification Peak 5	chr7:1-158620918(probes 85724:97517)           	6.1591e-279	 6.159e-279	both	0: t<0.12; 1: t>0.12	1	1	0	1	0	0	0	1	1	1	1	0	1	0	1	0	1	1	1	1	0	1	1	0	0	1	1	1	1	0	0	1	0	0	1	1	1	1	1	1	0	0	1	1	1	1	1	1	0	1	1	1	1	0	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	0	0	1	1	0	1	1	1	1	1	0	1	1	0	0	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	0	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	1	1	1	1	1	1	1	0	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	0	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	1	1	0	1	0	1	1	1	0	0	1	1	1	
MSKCC_standard_080606	Amplification Peak  6- Contributing Broad Events	7q	Amplitude values represent median within significant region.	Broad Event Corresponding to Amplification Peak 6	chr7:1-158620918(probes 85724:97517)           	2.3192e-77	 1.9855e-10	broad	0: t<0.12; 1: t>0.12	1	1	0	1	0	0	0	1	1	1	1	0	1	0	1	0	1	1	1	1	0	1	1	0	0	1	1	1	1	0	0	1	0	0	1	1	1	1	1	1	0	0	1	1	1	1	1	1	0	1	1	1	1	0	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	0	0	1	1	0	1	1	1	1	1	0	1	1	0	0	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	0	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	1	1	1	1	1	1	1	0	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	0	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	1	1	0	1	0	1	1	1	0	0	1	1	1	
MSKCC_standard_080606	Amplification Peak  9- Contributing Broad Events	19p	Amplitude values represent median within significant region.	Broad Event Corresponding to Amplification Peak 9	chr19:1-63558787(probes 184525:189802)         	2.2301e-17	 2.2301e-17	broad	0: t<0.12; 1: t>0.12	0	0	0	1	0	0	0	1	1	1	1	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	1	0	1	0	0	1	1	0	1	1	1	0	0	0	0	1	0	0	0	0	0	1	0	1	0	1	1	0	1	1	0	1	1	1	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	1	1	0	0	0	0	1	0	1	0	0	1	1	1	0	1	0	0	1	1	0	0	0	0	0	1	1	0	0	0	1	1	0	1	0	0	0	1	0	0	0	1	0	1	1	0	1	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0	0	0	1	1	1	0	1	0	0	1	0	0	0	1	1	1	1	0	0	0	0	0	
MSKCC_standard_080606	Amplification Peak  10- Contributing Broad Events	20p	Amplitude values represent median within significant region.	Broad Event Corresponding to Amplification Peak 10	chr20:1-62369651(probes 189804:194855)          	4.5734e-16	 4.5735e-16	broad	0: t<0.12; 1: t>0.12	0	0	0	0	0	0	0	1	1	1	0	0	1	0	0	0	0	0	1	1	0	1	0	0	0	0	1	1	1	0	0	0	1	1	0	0	1	0	1	0	1	1	0	1	0	1	0	0	0	1	0	1	1	0	1	1	0	0	1	1	0	0	1	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	1	1	1	0	0	0	0	1	0	0	0	0	0	1	1	1	1	1	0	1	1	1	0	0	1	1	1	0	1	1	1	1	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	1	0	0	0	0	0	0	0	1	1	1	1	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	1	0	0	0	0	0	1	1	0	1	1	0	1	0	0	0	0	0	1	1	0	0	0	0	0	
MSKCC_standard_080606	Deletion Peak  2- Contributing Broad Events	6q	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 2	chr6:106888655-170737898(probes 81056:85722)	1.1183e-07	  1.1183e-07	broad	0: t>-0.12; 1: t<-0.12	0	1	1	0	0	0	1	0	0	1	1	0	0	0	1	0	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	1	0	0	1	0	0	1	0	0	1	1	0	0	0	0	1	0	0	0	1	0	1	1	0	1	0	0	0	0	0	1	1	1	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	0	1	0	0	0	1	0	0	1	0	0	0	1	0	1	0	0	1	0	0	0	0	
MSKCC_standard_080606	Deletion Peak  3- Contributing Broad Events	9p	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 3	chr9:1-70233134(probes 107167:109910)           	3.155e-298	 3.1558e-298	both	0: t>-0.12; 1: t<-0.12	0	0	0	1	1	0	1	1	1	0	0	1	0	0	1	0	0	0	1	1	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	1	1	0	0	1	0	1	1	0	1	1	1	0	0	1	1	1	1	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	1	0	0	1	1	0	1	0	1	0	1	0	1	0	1	0	0	0	1	0	0	0	0	0	0	1	0	1	0	0	1	1	0	1	1	1	0	1	1	1	0	1	0	1	0	0	0	1	1	1	0	0	0	0	0	1	0	1	1	1	1	0	1	1	1	1	0	0	1	1	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	1	0	0	1	1	0	1	0	0	1	1	1	0	1	0	0	0	1	0	0	1	0	0	0	0	
MSKCC_standard_080606	Deletion Peak  4- Contributing Broad Events	10q	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 4	chr10:1-135061899(probes 115606:125570)       	6.3525e-122	 6.3525e-122	broad	0: t>-0.12; 1: t<-0.12	0	1	1	1	1	1	0	0	1	1	1	0	0	1	1	0	1	1	1	1	1	1	1	0	1	1	0	1	1	0	0	1	1	0	1	1	1	1	1	0	1	1	1	1	0	1	1	1	0	1	1	0	1	0	1	1	0	1	0	1	0	1	1	1	1	1	1	1	1	0	1	1	1	1	0	0	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	1	0	1	1	1	1	0	1	1	1	1	0	1	1	1	1	1	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	1	1	1	1	0	1	1	1	1	1	1	1	1	
MSKCC_standard_080606	Deletion Peak  5- Contributing Broad Events	13q	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 5	chr13:1-113964306(probes 146232:153473)     	3.6675e-23	  3.6674e-23	broad	0: t>-0.12; 1: t<-0.12	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	1	1	1	0	0	0	1	1	1	0	0	0	1	1	0	0	0	0	0	0	0	1	0	1	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	1	0	0	0	0	1	1	0	1	1	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	1	1	0	1	0	1	1	1	1	0	0	0	0	0	0	1	0	1	1	0	0	1	0	0	0	1	1	0	1	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	1	0	0	0	1	1	1	0	0	1	0	1	0	0	1	1	0	1	1	0	1	0	0	0	0	0	0	1	0	0	0	1	
MSKCC_standard_080606	Deletion Peak  6- Contributing Broad Events	14q	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 6	chr14:1-103043791(probes 153475:160165)     	2.4905e-09	  2.4905e-09	broad	0: t>-0.12; 1: t<-0.12	0	0	1	0	1	1	0	0	1	0	0	1	1	0	0	0	0	1	0	0	1	0	0	1	1	0	0	1	0	1	1	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	1	0	0	0	1	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0	0	1	1	0	1	1	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	1	1	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	1	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	1	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	1	1	0	0	0	
MSKCC_standard_080606	Deletion Peak  7- Contributing Broad Events	15q	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 7	chr15:32278208-37344162(probes 160903:161301)	0.091695	    0.091695	broad	0: t>-0.12; 1: t<-0.12	1	1	0	0	0	1	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	1	0	1	0	0	0	0	0	1	1	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	
MSKCC_standard_080606	Deletion Peak  8- Contributing Broad Events	22q	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 8	chr22:1-45436221(probes 197849:200011)       	2.3616e-10	  2.3616e-10	broad	0: t>-0.12; 1: t<-0.12	0	0	1	0	1	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	1	0	1	1	1	1	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	1	1	0	1	0	1	1	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	1	0	0	1	0	0	0	0	1	1	0	0	1	0	1	0	0	0	1	0	1	0	0	1	0	1	0	0	0	0	0	0	0	1	1	
peel_off.MSKCC_focal_080606	Amplification Peak 1	1q32.1  	chr1:202299300-202895563(probes 13933:13995)	chr1:202408554-202819784(probes 13946:13987)	chr1:201332880-203776980(probes 13841:14078)	9.8252e-15	  9.8252e-15	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.MSKCC_focal_080606	Amplification Peak 2	1q44    	chr1:241750669-242812047(probes 16929:17020)	chr1:242184886-242812047(probes 16967:17020)	chr1:241494132-242812047(probes 16902:17020)	0.0084369	   0.0084369	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	
peel_off.MSKCC_focal_080606	Amplification Peak 3	2p24.3  	chr2:13525740-20405532(probes 18388:18751)    	chr2:14353788-17013163(probes 18420:18569)    	chr2:11979077-20405532(probes 18309:18751)    	0.0088907	   0.0088907	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	
peel_off.MSKCC_focal_080606	Amplification Peak 4	3q26.33 	chr3:182196029-183245654(probes 47566:47616)	chr3:182340790-182775401(probes 47573:47590)	chr3:179192711-183245654(probes 47340:47616)	0.0038999	   0.0038999	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	
peel_off.MSKCC_focal_080606	Amplification Peak 5	4q12    	chr4:54498653-54580398(probes 52275:52284)    	chr4:54525205-54546894(probes 52277:52278)    	chr4:48777989-58655452(probes 52086:52557)    	3.7606e-44	  3.7606e-44	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	1	0	0	0	1	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	2	0	2	0	0	2	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	
peel_off.MSKCC_focal_080606	Amplification Peak 6	7p11.2  	chr7:54892258-55065093(probes 89821:89827)    	chr7:54892258-55044147(probes 89821:89824)    	chr7:50422510-62265725(probes 89601:89985)    	1.1615e-230	 1.1615e-230	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	2	0	2	0	0	0	0	2	2	2	0	0	0	0	0	0	0	0	2	0	2	2	0	2	0	0	0	0	0	0	2	2	0	0	2	0	0	0	0	2	0	0	0	0	2	0	2	0	2	0	0	0	0	0	2	0	2	0	2	0	0	2	2	2	2	0	0	0	0	0	0	2	0	0	0	2	2	0	2	0	0	2	0	2	2	2	2	0	0	2	2	2	2	0	0	2	2	0	2	0	2	2	2	2	2	0	0	0	2	0	2	2	0	0	0	2	2	2	2	2	0	0	0	2	2	0	0	0	2	2	0	2	0	2	2	0	2	0	0	0	0	2	2	0	2	0	0	0	2	2	0	2	2	0	0	0	0	0	2	0	0	2	2	2	2	2	0	2	0	2	0	1	2	0	0	0	2	0	2	0	0	2	0	0	0	0	2	2	2	2	2	0	2	0	
peel_off.MSKCC_focal_080606	Amplification Peak 7	7q21.2  	chr7:91711360-92438812(probes 91909:91984)    	chr7:91846145-92377128(probes 91924:91982)    	chr7:91581084-92852637(probes 91895:92021)    	0.0019336	   0.0085417	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	
peel_off.MSKCC_focal_080606	Amplification Peak 8	7q31.2  	chr7:116093418-116315388(probes 93890:93912)	chr7:116093418-116295557(probes 93890:93910)	chr7:116042293-117489164(probes 93887:94034)	2.4699e-10	  2.4699e-10	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	
peel_off.MSKCC_focal_080606	Amplification Peak 9	7q34    	chr7:141936809-142217405(probes 96117:96126)	chr7:141936809-142056340(probes 96117:96120)	chr7:141765118-142217405(probes 96103:96126)	4.1732e-05	  0.00021859	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	2	0	0	0	0	1	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.MSKCC_focal_080606	Amplification Peak 10	7q36.1  	chr7:152069872-152162095(probes 96987:96991)	chr7:152069872-152135222(probes 96987:96989)	chr7:151783620-152837289(probes 96969:97019)	1.8435e-07	  1.8435e-07	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.MSKCC_focal_080606	Amplification Peak 11	11p13   	chr11:32391331-33598207(probes 128164:128274)	chr11:32453029-32474687(probes 128173:128173)	chr11:32391331-32474687(probes 128164:128173)	0.069417	    0.069417	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	
peel_off.MSKCC_focal_080606	Amplification Peak 12	12p13.32	chr12:3801255-4357939(probes 136339:136381)    	chr12:4049649-4303446(probes 136355:136374)    	chr12:3801255-4357939(probes 136339:136381)    	0.006556	    0.006556	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.MSKCC_focal_080606	Amplification Peak 13	12q14.1 	chr12:56373677-56478011(probes 140659:140663)	chr12:56373677-56466133(probes 140659:140661)	chr12:55948032-58277820(probes 140594:140740)	5.6782e-44	  5.6782e-44	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	2	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	2	2	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	2	0	2	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	
peel_off.MSKCC_focal_080606	Amplification Peak 14	12q15   	chr12:67445318-67565839(probes 141378:141384)	chr12:67445318-67565839(probes 141378:141384)	chr12:67041821-69812767(probes 141339:141573)	3.7278e-35	  1.1997e-15	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	2	0	0	2	0	2	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	
peel_off.MSKCC_focal_080606	Deletion Peak 1	1p36.23	chr1:8408415-9326759(probes 404:497)                	chr1:8508459-9326759(probes 413:497)                	chr1:8103571-9360698(probes 387:501)                	2.3078e-06	 2.5653e-05	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	
peel_off.MSKCC_focal_080606	Deletion Peak 2	1p33   	chr1:51003451-51246870(probes 4204:4226)          	chr1:51003451-51231085(probes 4204:4225)          	chr1:50845731-51315432(probes 4189:4228)          	1.5542e-07	 1.5542e-07	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.MSKCC_focal_080606	Deletion Peak 3	6q26   	chr6:162222678-165387742(probes 85156:85329)    	chr6:163174063-164079632(probes 85246:85286)    	chr6:163174063-164079632(probes 85246:85286)    	0.069663	   0.069663	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.MSKCC_focal_080606	Deletion Peak 4	9p21.3 	chr9:21957549-21980521(probes 108760:108761)      	chr9:21968347-21980521(probes 108761:108761)      	chr9:19448799-30588349(probes 108531:109182)      	0	        NaN	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	2	0	0	2	0	0	2	2	2	1	2	2	0	0	2	0	0	1	2	2	0	2	0	2	2	0	0	0	1	0	0	2	2	0	0	2	0	0	0	0	0	0	1	2	0	2	0	0	2	2	0	1	0	0	1	2	0	2	0	1	0	2	2	2	2	2	0	2	1	1	0	0	2	0	0	0	2	2	0	2	2	2	2	0	2	2	2	1	0	0	1	1	2	0	0	0	2	2	0	2	0	0	2	1	0	2	1	1	0	1	2	0	0	2	0	0	1	0	0	2	2	2	0	1	1	0	0	1	0	2	0	2	2	0	2	2	0	0	0	2	1	2	0	0	2	2	2	0	1	0	2	2	2	2	0	1	1	2	2	0	0	0	0	2	0	2	2	2	1	0	2	0	0	1	2	1	2	2	1	2	0	2	2	2	2	2	0	2	2	2	2	0	0	0	1	
peel_off.MSKCC_focal_080606	Deletion Peak 5	10q23.2	chr10:89564119-89630077(probes 121715:121720)    	chr10:89580502-89600865(probes 121717:121717)    	chr10:89338166-91007119(probes 121691:121837)    	1.8071e-20	 1.8071e-20	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	2	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	
peel_off.MSKCC_focal_080606	Deletion Peak 6	10q26.3	chr10:133725315-135374737(probes 125563:125571)	chr10:135041192-135374737(probes 125567:125571)	chr10:127634833-135061899(probes 125069:125570)	2.6795e-08	 5.1766e-07	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.MSKCC_focal_080606	Deletion Peak 7	13q14.2	chr13:47761537-47963281(probes 148966:148988)    	chr13:47845533-47913448(probes 148976:148982)    	chr13:47761537-48059199(probes 148966:148996)    	0.00048253	 0.00048253	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	
peel_off.MSKCC_focal_080606	Deletion Peak 8	17q11.2	chr17:26424461-26669740(probes 174741:174766)    	chr17:26532555-26588738(probes 174753:174755)    	chr17:26532555-26588738(probes 174753:174755)    	0.16932	    0.16932	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.MSKCC_focal_080606	Amplification Peak 1 - log2 ratios	1q32.1  	chr1:202299300-202895563(probes 13933:13995)	chr1:202408554-202819784(probes 13946:13987)	chr1:201332880-203776980(probes 13841:14078)	9.8252e-15	  9.8252e-15	focal	Actual Log2 Ratio Given	0	0	1.479	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5013	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0362	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4972	0	0	0	1.4971	0	0.7152	0	1.5131	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5054	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5204	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5107	0	0	0	0.3916	0	0	0	0	0	0	0	0	0	1.4991	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.MSKCC_focal_080606	Amplification Peak 2 - log2 ratios	1q44    	chr1:241750669-242812047(probes 16929:17020)	chr1:242184886-242812047(probes 16967:17020)	chr1:241494132-242812047(probes 16902:17020)	0.0084369	   0.0084369	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.2882	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5078	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4902	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5157	0	0	0.2889	0	0	0	
peel_off.MSKCC_focal_080606	Amplification Peak 3 - log2 ratios	2p24.3  	chr2:13525740-20405532(probes 18388:18751)    	chr2:14353788-17013163(probes 18420:18569)    	chr2:11979077-20405532(probes 18309:18751)    	0.0088907	   0.0088907	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	1.4384	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8801	0	0	0	0	0	0	0	0.7037	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.4836	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5111	0	
peel_off.MSKCC_focal_080606	Amplification Peak 4 - log2 ratios	3q26.33 	chr3:182196029-183245654(probes 47566:47616)	chr3:182340790-182775401(probes 47573:47590)	chr3:179192711-183245654(probes 47340:47616)	0.0038999	   0.0038999	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4763	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5011	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5433	0.9257	0	
peel_off.MSKCC_focal_080606	Amplification Peak 5 - log2 ratios	4q12    	chr4:54498653-54580398(probes 52275:52284)    	chr4:54525205-54546894(probes 52277:52278)    	chr4:48777989-58655452(probes 52086:52557)    	3.7606e-44	  3.7606e-44	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	1.4384	0	0	0	0	1.4834	0	0	0	0	0	0	1.0435	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4735	0	0	1.5754	0	1.4316	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6364	0	0	0	0	0	0	0	0	0	0	0	0	0	1.446	0	0	0	0	1.4859	1.4877	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4972	0	0	0	0	0	0	1.3221	0	0	0	0.672	0	0	0	0.8232	1.4927	0	0	1.5517	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3508	1.3982	0	1.4887	0	1.4709	0	0	1.4791	0	0	1.5011	0	1.5318	0	0	0	0	0	0	0	0	0	0	0	0	1.4959	0	0	0	0	0	0	0	0	0	0	0.6133	0	0	0	0	0.5607	0	0	0	0	0	0	0	0	0	0	0	0	1.5006	0	0	0	0	0.376	0	0	0	
peel_off.MSKCC_focal_080606	Amplification Peak 6 - log2 ratios	7p11.2  	chr7:54892258-55065093(probes 89821:89827)    	chr7:54892258-55044147(probes 89821:89824)    	chr7:50422510-62265725(probes 89601:89985)    	1.1615e-230	 1.1615e-230	focal	Actual Log2 Ratio Given	0	1.5015	0	1.505	0	0	0	0	1.4917	1.5076	1.5	0	0	0	0	0	0	0	0	1.4876	0	1.4879	1.5073	0	1.4763	0	0	0	0	0	0	1.4985	1.4894	0	0	1.5013	0	0	0	0	1.4854	0	0	0	0	1.5019	0	1.5076	0	1.5207	0	0	0	0	0	1.4942	0	1.5032	0	1.5016	0	0	1.5133	1.4985	1.5133	1.5063	0	0	0	0	0	0	1.4829	0	0	0	1.4958	1.4926	0	1.1741	0	0	1.4937	0	1.4936	1.5269	1.4942	1.5294	0	0	1.4867	1.5138	1.5038	1.4983	0	0	1.4972	1.5012	0	1.494	0	1.5073	1.4987	1.0009	1.5131	1.5092	0	0	0	1.4949	0	1.5078	1.2723	0	0	0	1.5112	1.5037	1.0366	1.5195	1.5096	0	0	0	1.1808	1.5316	0	0	0	1.5052	1.4933	0	1.5432	0	1.4887	1.4652	0	1.5018	0	0	0	0	1.5011	1.6048	0	1.5204	0	0	0	1.5324	1.5115	0	1.498	1.4735	0	0	0	0	0	1.4944	0	0	1.5474	1.4902	1.5157	1.5107	1.5078	0	1.3756	0	1.5404	0	0.7489	1.162	0	0	0	1.4999	0	1.4991	0	0	1.5265	0	0	0	0	1.4589	1.5157	1.5583	1.4947	1.5089	0	1.5111	0	
peel_off.MSKCC_focal_080606	Amplification Peak 7 - log2 ratios	7q21.2  	chr7:91711360-92438812(probes 91909:91984)    	chr7:91846145-92377128(probes 91924:91982)    	chr7:91581084-92852637(probes 91895:92021)    	0.0019336	   0.0085417	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4003	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7595	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7618	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4709	0	0	0	0	0	1.4939	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6781	0	0	0	0	0	0	0	0	0	0	0.6697	0	0	0	0	
peel_off.MSKCC_focal_080606	Amplification Peak 8 - log2 ratios	7q31.2  	chr7:116093418-116315388(probes 93890:93912)	chr7:116093418-116295557(probes 93890:93910)	chr7:116042293-117489164(probes 93887:94034)	2.4699e-10	  2.4699e-10	focal	Actual Log2 Ratio Given	0	0	0	0	1.0147	0	0	0	0	0	0	1.4834	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5605	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0914	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3855	0	1.5153	0	0	0	0	0	0	0	0	1.5206	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9818	0	0	1.5089	0	0	0	
peel_off.MSKCC_focal_080606	Amplification Peak 9 - log2 ratios	7q34    	chr7:141936809-142217405(probes 96117:96126)	chr7:141936809-142056340(probes 96117:96120)	chr7:141765118-142217405(probes 96103:96126)	4.1732e-05	  0.00021859	focal	Actual Log2 Ratio Given	0	0.9539	0	0	0	0	0.711	0.63363	0.6944	0	0	0	0.7695	0	0	0	0	0	0	0	0	0	0	0.363	0.3405	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1568	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6434	0	0	0	0	0	0	0	0	0.46026	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7162	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.MSKCC_focal_080606	Amplification Peak 10 - log2 ratios	7q36.1  	chr7:152069872-152162095(probes 96987:96991)	chr7:152069872-152135222(probes 96987:96989)	chr7:151783620-152837289(probes 96969:97019)	1.8435e-07	  1.8435e-07	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3581	0	0	0	0	0.867	1.0406	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4854	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0551	0	0	0	0	0	0	0	0	0	0	0	1.4813	0	0	0	0.5531	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2887	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7796	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6901	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.MSKCC_focal_080606	Amplification Peak 11 - log2 ratios	11p13   	chr11:32391331-33598207(probes 128164:128274)	chr11:32453029-32474687(probes 128173:128173)	chr11:32391331-32474687(probes 128164:128173)	0.069417	    0.069417	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5155	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8146	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5089	0	0	0	
peel_off.MSKCC_focal_080606	Amplification Peak 12 - log2 ratios	12p13.32	chr12:3801255-4357939(probes 136339:136381)    	chr12:4049649-4303446(probes 136355:136374)    	chr12:3801255-4357939(probes 136339:136381)    	0.006556	    0.006556	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9534	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5278	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5131	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2304	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.MSKCC_focal_080606	Amplification Peak 13 - log2 ratios	12q14.1 	chr12:56373677-56478011(probes 140659:140663)	chr12:56373677-56466133(probes 140659:140661)	chr12:55948032-58277820(probes 140594:140740)	5.6782e-44	  5.6782e-44	focal	Actual Log2 Ratio Given	0	1.5015	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5073	0	0	0	0	0	0	0	1.4774	0	0	0	0	0	1.5754	0	0	0	0	0	0	0	0	0	1.328	1.5076	0	0	0.7958	0	0	0	0	0	0	0	1.5278	0	0	0	0	0	0	0	0	0	0	0	0	1.5086	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5039	0	0	0	0	1.4983	0	0	0	1.5012	0	0	0	0	0	0	1.5131	0	0	0	0	0	0	1.5078	1.4927	0	0	1.5517	0	1.5037	0	0	0	0	0	0	0	0	0	0	0	0	1.4933	0	0	0	0	0.3874	1.4709	0	1.5127	0	0	0	1.5011	1.6048	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2066	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5433	0	0	
peel_off.MSKCC_focal_080606	Amplification Peak 14 - log2 ratios	12q15   	chr12:67445318-67565839(probes 141378:141384)	chr12:67445318-67565839(probes 141378:141384)	chr12:67041821-69812767(probes 141339:141573)	3.7278e-35	  1.1997e-15	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4615	0	0	0	0	1.5008	0	0	0	0	1.4774	0	0	0	0	1.5013	0	0	0	0	0	0	0	0	0	0	1.4593	1.5076	0	0	0	0	0	0	0	0	0	0	-0.65856	0	0	0	0	0	0	0	1.4813	0	0	0	1.5001	0	0	1.5021	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4983	0	0	0	0	0	0	0	1.5073	0	0	0	0	0	0	0	0	0	1.5078	1.4927	0	0	1.5517	0	1.5037	0	0	1.5096	0	0	0	0	0	0	0	0	0	1.4933	0	0	0	1.3982	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.518	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5089	0	0	0	
peel_off.MSKCC_focal_080606	Deletion Peak 1 - log2 ratios	1p36.23	chr1:8408415-9326759(probes 404:497)                	chr1:8508459-9326759(probes 413:497)                	chr1:8103571-9360698(probes 387:501)                	2.3078e-06	 2.5653e-05	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4867	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4962	0	0	0	0	0	-0.4017	0	0	0	0	0	0	0	0	0	0	0	-0.7944	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4417	0	0	0	0	0	
peel_off.MSKCC_focal_080606	Deletion Peak 2 - log2 ratios	1p33   	chr1:51003451-51246870(probes 4204:4226)          	chr1:51003451-51231085(probes 4204:4225)          	chr1:50845731-51315432(probes 4189:4228)          	1.5542e-07	 1.5542e-07	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4246	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5171	0	0	0	0	0	0	0	0	-1.5123	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4855	0	0	-0.7644	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4682	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.7893	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.MSKCC_focal_080606	Deletion Peak 3 - log2 ratios	6q26   	chr6:162222678-165387742(probes 85156:85329)    	chr6:163174063-164079632(probes 85246:85286)    	chr6:163174063-164079632(probes 85246:85286)    	0.069663	   0.069663	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0332	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.631	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0148	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0277	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.MSKCC_focal_080606	Deletion Peak 4 - log2 ratios	9p21.3 	chr9:21957549-21980521(probes 108760:108761)      	chr9:21968347-21980521(probes 108761:108761)      	chr9:19448799-30588349(probes 108531:109182)      	0	        NaN	focal	Actual Log2 Ratio Given	-1.3339	0	0	-1.495	0	0	-1.5616	-1.5255	-1.5083	-1.273	-1.5	-1.5166	0	0	-1.5175	0	0	-0.8712	-1.4845	-1.5124	0	-1.5121	0	-1.5021	-1.5237	0	0	0	-0.5959	0	0	-1.4011	-1.4211	0	0	-1.4987	0	0	0	0	0	0	-0.8396	-1.3968	0	-1.4981	0	0	-1.5289	-1.4793	0	-0.947	0	0	-1.1652	-1.5058	0	-1.4968	0	-1.0783	0	-1.4395	-1.3485	-1.5015	-1.4867	-1.4937	0	-1.4874	-0.83124	-1.0705	0	0	-1.5171	0	0	0	-1.5042	-1.5074	0	-1.4936	-1.5141	-1.5123	-1.4021	0	-1.5064	-1.4731	-1.5058	-0.92649	0	0	-0.4059	-1.1598	-1.4962	0	0	0	-1.5028	-1.4988	0	-1.506	0	0	-1.5013	-1.1337	0	-1.4908	-1.1574	-0.9416	0	-1.0904	-1.4611	0	0	-1.5146	0	0	-0.54869	0	0	-1.4805	-1.4904	-1.565	0	-0.5822	-1.068	0	0	-0.8225	0	-1.4948	0	-1.4946	-1.4568	0	-1.3701	-1.3342	0	0	0	-1.5209	-0.9668	-1.4918	0	0	-1.4682	-1.4796	-1.4847	0	-1.0479	0	-1.4885	-1.482	-1.502	-1.5265	0	-1.0124	-1.1776	-1.5041	-1.5201	0	0	0	0	-1.5098	0	-1.4893	-1.4922	-1.5065	-0.7558	0	-1.4596	0	0	-0.7058	-1.5387	-0.8691	-1.3616	-1.5001	-0.7518	-1.5009	0	-1.5432	-1.4735	-1.5245	-1.4933	-1.3741	0	-1.5411	-1.4843	-1.4417	-1.5053	0	0	0	-1.1928	
peel_off.MSKCC_focal_080606	Deletion Peak 5 - log2 ratios	10q23.2	chr10:89564119-89630077(probes 121715:121720)    	chr10:89580502-89600865(probes 121717:121717)    	chr10:89338166-91007119(probes 121691:121837)    	1.8071e-20	 1.8071e-20	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9332	0	0	-1.1607	-1.5121	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5029	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.3826	0	0	0	0	0	0	0	0	0	0	0	0	-1.493	0	-0.7579	-1.4885	-1.482	0	0	0	0	0	-1.5041	0	0	0	0	0	0	0	0	0	0	-0.8003	0	0	0	-1.4933	0	0	0	0	0	-0.8063	0	0	0	0	0	0	0	0	0	0	0	-1.5053	0	0	-0.61226	0	
peel_off.MSKCC_focal_080606	Deletion Peak 6 - log2 ratios	10q26.3	chr10:133725315-135374737(probes 125563:125571)	chr10:135041192-135374737(probes 125567:125571)	chr10:127634833-135061899(probes 125069:125570)	2.6795e-08	 5.1766e-07	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0732	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.7354	0	0	0	0	0	0	-0.5134	0	0	0	0	-0.9099	0	0	-0.3419	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.8195	0	0	0	0	0	0	0	0	0	0	0	0	-0.8632	0	-1.0424	0	0	0	0	0	0	0	0	0	0	0	-1.019	0	0	0	0	0	0	0	0	0	0	0	-0.6191	0	0	0	0	0	0	0	0	0	0	0	-0.6958	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9748	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.MSKCC_focal_080606	Deletion Peak 7 - log2 ratios	13q14.2	chr13:47761537-47963281(probes 148966:148988)    	chr13:47845533-47913448(probes 148976:148982)    	chr13:47761537-48059199(probes 148966:148996)    	0.00048253	 0.00048253	focal	Actual Log2 Ratio Given	-0.5781	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5289	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.7477	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4923	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5245	0	0	0	0	0	0	0	0	0	0	0	
peel_off.MSKCC_focal_080606	Deletion Peak 8 - log2 ratios	17q11.2	chr17:26424461-26669740(probes 174741:174766)    	chr17:26532555-26588738(probes 174753:174755)    	chr17:26532555-26588738(probes 174753:174755)    	0.16932	    0.16932	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.1321	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.7106	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.2876	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 1	1q32.1  	chr1:202299300-202895563(probes 13933:13995)	chr1:202408554-202819784(probes 13946:13987)	chr1:201332880-203776980(probes 13841:14078)	9.7946e-15	  9.7946e-15	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 2	1q44    	chr1:241750669-242812047(probes 16929:17020)	chr1:242184886-242812047(probes 16967:17020)	chr1:241494132-242812047(probes 16902:17020)	0.0084331	   0.0084331	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	
MSKCC_focal_080606	Amplification Peak 3	2p24.3  	chr2:13525740-20405532(probes 18388:18751)    	chr2:14353788-17013163(probes 18420:18569)    	chr2:11979077-20405532(probes 18309:18751)    	0.0088869	   0.0088869	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	
MSKCC_focal_080606	Amplification Peak 4	3q26.33 	chr3:182196029-183245654(probes 47566:47616)	chr3:182340790-182775401(probes 47573:47590)	chr3:179192711-183245654(probes 47340:47616)	0.003898	    0.003898	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	
MSKCC_focal_080606	Amplification Peak 5	4q12    	chr4:53846353-53951479(probes 52217:52223)    	chr4:53846353-53913375(probes 52217:52219)    	chr4:48777989-58655452(probes 52086:52557)    	8.9243e-20	     0.11848	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	
MSKCC_focal_080606	Amplification Peak 6	4q12    	chr4:54498653-54580398(probes 52275:52284)    	chr4:54525205-54546894(probes 52277:52278)    	chr4:48777989-58655452(probes 52086:52557)    	3.7223e-44	  3.7223e-44	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	1	0	0	0	1	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	2	0	2	0	0	2	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	
MSKCC_focal_080606	Amplification Peak 7	7p22.3  	chr7:1-1802162(probes 85724:85855)               	chr7:1434712-1481580(probes 85811:85814)        	chr7:1434712-1481580(probes 85811:85814)        	0.11805	     0.11805	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 8	7p22.2  	chr7:2290956-2748042(probes 85918:85954)        	chr7:2458198-2689263(probes 85935:85948)        	chr7:2458198-2689263(probes 85935:85948)        	0.13614	     0.13614	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 9	7p22.1  	chr7:4866301-5287705(probes 86124:86166)        	chr7:5153182-5287705(probes 86157:86166)        	chr7:5153182-5287705(probes 86157:86166)        	0.23547	     0.23547	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 10	7p22.1  	chr7:5373928-5781548(probes 86176:86200)        	chr7:5409969-5761426(probes 86179:86198)        	chr7:5373928-5761426(probes 86176:86198)        	0.108	       0.108	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	
MSKCC_focal_080606	Amplification Peak 11	7p15.1  	chr7:28659445-28994331(probes 87778:87813)    	chr7:28842364-28911521(probes 87802:87804)    	chr7:28554394-29020877(probes 87764:87817)    	0.0047396	   0.0047396	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 12	7p14.3  	chr7:32667226-33014139(probes 88175:88203)    	chr7:32772616-32957019(probes 88181:88199)    	chr7:32667226-33164807(probes 88175:88222)    	0.019365	    0.047608	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 13	7p14.1  	chr7:37753305-38416859(probes 88620:88657)    	chr7:37790105-38221153(probes 88623:88654)    	chr7:37790105-38221153(probes 88623:88654)    	0.11805	     0.11805	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	
MSKCC_focal_080606	Amplification Peak 14	7p14.1  	chr7:40292888-41010932(probes 88839:88908)    	chr7:40292888-40330705(probes 88839:88842)    	chr7:40292888-40330705(probes 88839:88842)    	0.12525	     0.12525	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	
MSKCC_focal_080606	Amplification Peak 15	7p12.1  	chr7:51621136-52262570(probes 89696:89712)    	chr7:51923946-52262570(probes 89705:89712)    	chr7:50422510-62265725(probes 89601:89985)    	6.544e-06	    0.043385	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 16	7p12.1  	chr7:52601168-52798845(probes 89725:89728)    	chr7:52601168-52798845(probes 89725:89728)    	chr7:50422510-62265725(probes 89601:89985)    	3.7582e-13	    0.035124	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	
MSKCC_focal_080606	Amplification Peak 17	7p11.2  	chr7:54892258-55065093(probes 89821:89827)    	chr7:54892258-55044147(probes 89821:89824)    	chr7:50422510-62265725(probes 89601:89985)    	1.0725e-230	 1.0725e-230	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	2	0	2	0	0	0	0	2	2	2	0	0	0	0	0	0	0	0	2	0	2	2	0	2	0	0	0	0	0	0	2	2	0	0	2	0	0	0	0	2	0	0	0	0	2	0	2	0	2	0	0	0	0	0	2	0	2	0	2	0	0	2	2	2	2	0	0	0	0	0	0	2	0	0	0	2	2	0	2	0	0	2	0	2	2	2	2	0	0	2	2	2	2	0	0	2	2	0	2	0	2	2	2	2	2	0	0	0	2	0	2	2	0	0	0	2	2	2	2	2	0	0	0	2	2	0	0	0	2	2	0	2	0	2	2	0	2	0	0	0	0	2	2	0	2	0	0	0	2	2	0	2	2	0	0	0	0	0	2	0	0	2	2	2	2	2	0	2	0	2	0	1	2	0	0	0	2	0	2	0	0	2	0	0	0	0	2	2	2	2	2	0	2	0	
MSKCC_focal_080606	Amplification Peak 18	7p11.2  	chr7:55737153-55940686(probes 89870:89884)    	chr7:55768248-55840343(probes 89872:89874)    	chr7:50422510-62265725(probes 89601:89985)    	2.2052e-51	    0.037709	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	2	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	2	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	2	2	0	0	0	0	2	0	0	0	2	2	0	2	0	0	0	0	2	0	0	0	0	2	0	0	2	0	0	0	1	0	0	0	2	1	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 19	7p11.2  	chr7:56461116-57213587(probes 89927:89949)    	chr7:56575990-56742062(probes 89942:89945)    	chr7:50422510-62265725(probes 89601:89985)    	7.8049e-14	    0.034077	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 20	7q11.22 	chr7:67486026-67832262(probes 90266:90274)    	chr7:67621685-67810142(probes 90270:90273)    	chr7:67621685-67832262(probes 90270:90274)    	0.036545	    0.093869	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 21	7q21.11 	chr7:77353089-78118620(probes 90946:91031)    	chr7:77709849-77926786(probes 90985:91009)    	chr7:77353089-78118620(probes 90946:91031)    	0.021055	    0.021055	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 22	7q21.2  	chr7:91846145-92377128(probes 91924:91982)    	chr7:92016060-92377128(probes 91946:91982)    	chr7:91581084-92852637(probes 91895:92021)    	7.0468e-05	  7.0468e-05	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 23	7q31.1  	chr7:111998433-112446642(probes 93660:93683)	chr7:112211941-112269761(probes 93676:93680)	chr7:112211941-112269761(probes 93676:93680)	0.11805	     0.11805	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 24	7q31.2  	chr7:116093418-116315388(probes 93890:93912)	chr7:116093418-116295557(probes 93890:93910)	chr7:116042293-117489164(probes 93887:94034)	2.465e-10	   2.465e-10	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	
MSKCC_focal_080606	Amplification Peak 25	7q31.31 	chr7:119760230-120536618(probes 94126:94208)	chr7:119794759-119825699(probes 94130:94132)	chr7:119760230-119876966(probes 94126:94138)	0.028869	     0.12623	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	
MSKCC_focal_080606	Amplification Peak 26	7q32.2  	chr7:128871145-129533543(probes 94891:94951)	chr7:129306632-129424700(probes 94929:94938)	chr7:128832895-129533543(probes 94887:94951)	0.031806	    0.096368	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 27	7q33    	chr7:133008083-133713654(probes 95265:95337)	chr7:133103607-133125992(probes 95277:95278)	chr7:133008083-133713654(probes 95265:95337)	0.014789	    0.054774	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	
MSKCC_focal_080606	Amplification Peak 28	7q34    	chr7:141928582-142056340(probes 96116:96120)	chr7:141928582-142021347(probes 96116:96116)	chr7:141765118-142217405(probes 96103:96126)	1.2484e-05	  7.3608e-05	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	2	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 29	7q36.1  	chr7:152069872-152162095(probes 96987:96991)	chr7:152069872-152135222(probes 96987:96989)	chr7:151783620-152837289(probes 96969:97019)	1.8408e-07	  1.8408e-07	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 30	11p13   	chr11:32391331-33598207(probes 128164:128274)	chr11:32453029-32474687(probes 128173:128173)	chr11:32391331-32474687(probes 128164:128173)	0.06939	     0.06939	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	
MSKCC_focal_080606	Amplification Peak 31	12p13.32	chr12:3801255-4357939(probes 136339:136381)    	chr12:4049649-4303446(probes 136355:136374)    	chr12:3801255-4357939(probes 136339:136381)    	0.0065511	   0.0065511	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 32	12q13.11	chr12:44711372-45058800(probes 139298:139315)	chr12:44899814-44919711(probes 139308:139308)	chr12:44899814-44919711(probes 139308:139308)	0.054452	    0.054452	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 33	12q13.13	chr12:49954935-50899805(probes 139844:139936)	chr12:50151461-50728918(probes 139869:139926)	chr12:50151461-50373447(probes 139869:139887)	0.12886	     0.23419	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 34	12q13.13	chr12:50773842-51191351(probes 139936:139967)	chr12:50934661-51108123(probes 139944:139952)	chr12:50934661-51108123(probes 139944:139952)	0.12525	     0.12525	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	
MSKCC_focal_080606	Amplification Peak 35	12q13.3 	chr12:55962882-56091501(probes 140595:140604)	chr12:56030455-56056483(probes 140600:140600)	chr12:55948032-58277820(probes 140594:140740)	1.2623e-09	    0.019365	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 36	12q13.3 	chr12:56152449-56219659(probes 140622:140636)	chr12:56184063-56208103(probes 140629:140633)	chr12:55948032-58277820(probes 140594:140740)	2.2087e-29	  9.4347e-05	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	2	2	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	2	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	
MSKCC_focal_080606	Amplification Peak 37	12q14.1 	chr12:56373677-56478011(probes 140659:140663)	chr12:56373677-56466133(probes 140659:140661)	chr12:55948032-58277820(probes 140594:140740)	5.6207e-44	  5.6207e-44	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	2	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	2	2	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	2	0	2	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	
MSKCC_focal_080606	Amplification Peak 38	12q14.1 	chr12:57237830-57361795(probes 140696:140702)	chr12:57270522-57319722(probes 140698:140700)	chr12:55948032-58277820(probes 140594:140740)	1.5603e-08	    0.039756	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	
MSKCC_focal_080606	Amplification Peak 39	12q14.1 	chr12:59528398-59745647(probes 140801:140806)	chr12:59553813-59714965(probes 140802:140805)	chr12:59415651-59745647(probes 140798:140806)	0.00013215	   0.0076214	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 40	12q14.1 	chr12:60673436-60892166(probes 140854:140873)	chr12:60734358-60824865(probes 140860:140866)	chr12:60422404-61169773(probes 140834:140900)	0.0035293	      0.1027	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 41	12q14.2 	chr12:62822779-62942854(probes 141014:141024)	chr12:62848019-62885049(probes 141017:141019)	chr12:62602437-63438190(probes 140991:141069)	2.998e-07	  3.1568e-05	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 42	12q14.3 	chr12:63453068-63617542(probes 141072:141086)	chr12:63478632-63497752(probes 141075:141075)	chr12:63453068-63617542(probes 141072:141086)	0.011017	     0.23547	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 43	12q14.3 	chr12:64154541-64266035(probes 141134:141141)	chr12:64161994-64205630(probes 141135:141135)	chr12:64125224-64266035(probes 141131:141141)	0.00096666	    0.018183	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 44	12q14.3 	chr12:64394241-64787168(probes 141155:141185)	chr12:64489044-64621599(probes 141167:141177)	chr12:64489044-64787168(probes 141167:141185)	0.019365	      0.1849	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 45	12q14.3 	chr12:65503913-65867893(probes 141251:141263)	chr12:65555704-65680459(probes 141254:141257)	chr12:65305673-66246614(probes 141239:141281)	6.544e-06	  0.00022094	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 46	12q15   	chr12:66798931-66855535(probes 141308:141312)	chr12:66815929-66843841(probes 141309:141310)	chr12:66798931-66855535(probes 141308:141312)	0.0016024	     0.02642	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 47	12q15   	chr12:67144798-67231513(probes 141345:141349)	chr12:67173217-67220042(probes 141347:141348)	chr12:67041821-69812767(probes 141339:141573)	1.7259e-06	  6.6741e-05	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 48	12q15   	chr12:67445318-67565839(probes 141378:141384)	chr12:67445318-67543829(probes 141378:141383)	chr12:67041821-69812767(probes 141339:141573)	3.6986e-35	  7.3272e-33	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	2	0	0	2	0	2	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	
MSKCC_focal_080606	Amplification Peak 49	12q15   	chr12:67950429-68008694(probes 141412:141415)	chr12:67957411-67972226(probes 141413:141413)	chr12:67041821-69812767(probes 141339:141573)	7.8049e-14	   0.0010373	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 50	12q15   	chr12:68263568-68387706(probes 141440:141455)	chr12:68275908-68334428(probes 141442:141447)	chr12:67041821-69812767(probes 141339:141573)	1.5603e-08	     0.23547	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 51	12q15   	chr12:68782919-68968087(probes 141491:141499)	chr12:68858382-68910096(probes 141493:141493)	chr12:67041821-69812767(probes 141339:141573)	6.5517e-07	    0.017509	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 52	12q15   	chr12:69204521-69559973(probes 141523:141558)	chr12:69289114-69336822(probes 141532:141535)	chr12:67041821-69812767(probes 141339:141573)	2.6351e-05	    0.017275	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 53	12q15   	chr12:69326377-69855883(probes 141536:141577)	chr12:69604988-69678176(probes 141567:141568)	chr12:67041821-69812767(probes 141339:141573)	0.0010328	      0.2081	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Deletion Peak 1	1p36.23 	chr1:7589630-8010806(probes 339:377)                	chr1:7920359-7958899(probes 369:371)                	chr1:7735057-8103569(probes 345:385)                	0.0019412	   0.054138	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Deletion Peak 2	1p36.23 	chr1:8478288-8575595(probes 411:417)                	chr1:8508459-8575595(probes 413:417)                	chr1:8103571-9360698(probes 387:501)                	2.3056e-06	 2.3056e-06	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	
MSKCC_focal_080606	Deletion Peak 3	1p33    	chr1:51003451-51246870(probes 4204:4226)          	chr1:51003451-51231085(probes 4204:4225)          	chr1:50845731-51315432(probes 4189:4228)          	1.5515e-07	 1.5515e-07	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Deletion Peak 4	6q26    	chr6:162222678-165387742(probes 85156:85329)    	chr6:163174063-164079632(probes 85246:85286)    	chr6:163174063-164079632(probes 85246:85286)    	0.069648	   0.069648	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Deletion Peak 5	9p22.1  	chr9:19703884-19997630(probes 108554:108570)      	chr9:19732117-19760115(probes 108555:108556)      	chr9:19448799-30588349(probes 108531:109182)      	3.2887e-21	 4.9512e-05	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Deletion Peak 6	9p21.3  	chr9:20661716-20936611(probes 108620:108657)      	chr9:20883454-20906835(probes 108654:108654)      	chr9:19448799-30588349(probes 108531:109182)      	2.2651e-55	  0.0095553	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	2	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	2	0	0	0	0	1	0	0	2	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Deletion Peak 7	9p21.3  	chr9:21957549-21980521(probes 108760:108761)      	chr9:21968347-21980521(probes 108761:108761)      	chr9:19448799-30588349(probes 108531:109182)      	0	        NaN	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	2	0	0	2	0	0	2	2	2	1	2	2	0	0	2	0	0	1	2	2	0	2	0	2	2	0	0	0	1	0	0	2	2	0	0	2	0	0	0	0	0	0	1	2	0	2	0	0	2	2	0	1	0	0	1	2	0	2	0	1	0	2	2	2	2	2	0	2	1	1	0	0	2	0	0	0	2	2	0	2	2	2	2	0	2	2	2	1	0	0	1	1	2	0	0	0	2	2	0	2	0	0	2	1	0	2	1	1	0	1	2	0	0	2	0	0	1	0	0	2	2	2	0	1	1	0	0	1	0	2	0	2	2	0	2	2	0	0	0	2	1	2	0	0	2	2	2	0	1	0	2	2	2	2	0	1	1	2	2	0	0	0	0	2	0	2	2	2	1	0	2	0	0	1	2	1	2	2	1	2	0	2	2	2	2	2	0	2	2	2	2	0	0	0	1	
MSKCC_focal_080606	Deletion Peak 8	9p21.3  	chr9:22346408-22797749(probes 108779:108792)      	chr9:22462726-22527009(probes 108787:108788)      	chr9:19448799-30588349(probes 108531:109182)      	1.9555e-134	   0.066389	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	0	0	2	0	0	2	0	0	1	2	2	0	0	0	0	0	0	2	0	0	2	0	0	2	0	0	0	1	0	0	2	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	2	2	0	1	0	0	0	2	0	2	0	0	0	0	0	0	2	2	0	0	1	0	0	0	2	0	0	0	2	2	0	0	2	2	2	0	2	2	2	1	0	0	1	0	2	0	0	0	0	0	0	2	0	0	0	0	0	2	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	1	0	2	0	2	2	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	1	0	0	0	2	2	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	1	2	2	0	0	0	2	0	0	0	0	0	2	0	2	2	0	0	0	1	
MSKCC_focal_080606	Deletion Peak 9	9p21.3  	chr9:23603550-23751946(probes 108825:108836)      	chr9:23636700-23740647(probes 108827:108835)      	chr9:19448799-30588349(probes 108531:109182)      	3.0575e-87	 3.4001e-06	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	0	0	2	0	0	2	0	0	2	2	0	0	0	0	0	0	0	2	0	0	2	0	0	2	0	0	0	1	0	0	2	0	0	2	2	0	0	0	0	0	0	1	0	0	2	0	0	2	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	2	0	1	0	0	1	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	1	0	2	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	2	0	2	2	0	0	0	1	
MSKCC_focal_080606	Deletion Peak 10	9p21.2  	chr9:26246130-26433721(probes 108914:108921)      	chr9:26362321-26433721(probes 108919:108921)      	chr9:19448799-30588349(probes 108531:109182)      	3.6537e-42	 2.3365e-09	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	2	0	0	0	2	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	1	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	2	0	2	2	0	0	0	0	
MSKCC_focal_080606	Deletion Peak 11	9p21.2  	chr9:27965910-28223218(probes 109048:109073)      	chr9:28016856-28145063(probes 109054:109065)      	chr9:19448799-30588349(probes 108531:109182)      	1.099e-14	  0.0040552	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	
MSKCC_focal_080606	Deletion Peak 12	10q23.2 	chr10:89564119-89630077(probes 121715:121720)    	chr10:89580502-89600865(probes 121717:121717)    	chr10:89338166-91007119(probes 121691:121837)    	1.8008e-20	 1.8008e-20	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	2	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	
MSKCC_focal_080606	Deletion Peak 13	10q23.31	chr10:89791068-90182413(probes 121735:121759)    	chr10:89879206-90017816(probes 121738:121741)    	chr10:89338166-91007119(probes 121691:121837)    	4.6065e-12	   0.019551	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	
MSKCC_focal_080606	Deletion Peak 14	10q26.3 	chr10:133725315-135374737(probes 125563:125571)	chr10:135041192-135374737(probes 125567:125571)	chr10:127634833-135061899(probes 125069:125570)	2.6761e-08	 2.6761e-08	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Deletion Peak 15	13q14.2 	chr13:47761537-47963281(probes 148966:148988)    	chr13:47845533-47913448(probes 148976:148982)    	chr13:47761537-48059199(probes 148966:148996)    	0.00048201	 0.00048201	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Deletion Peak 16	17q11.2 	chr17:26424461-26669740(probes 174741:174766)    	chr17:26532555-26588738(probes 174753:174755)    	chr17:26532555-26588738(probes 174753:174755)    	0.16931	    0.16931	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 1 - log2 ratios	1q32.1  	chr1:202299300-202895563(probes 13933:13995)	chr1:202408554-202819784(probes 13946:13987)	chr1:201332880-203776980(probes 13841:14078)	9.7946e-15	  9.7946e-15	focal	Actual Log2 Ratio Given	0	0	1.479	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5013	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0362	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4972	0	0	0	1.4971	0	0.7152	0	1.5131	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5054	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5204	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5107	0	0	0	0.3916	0	0	0	0	0	0	0	0	0	1.4991	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 2 - log2 ratios	1q44    	chr1:241750669-242812047(probes 16929:17020)	chr1:242184886-242812047(probes 16967:17020)	chr1:241494132-242812047(probes 16902:17020)	0.0084331	   0.0084331	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.2882	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5078	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4902	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5157	0	0	0.2889	0	0	0	
MSKCC_focal_080606	Amplification Peak 3 - log2 ratios	2p24.3  	chr2:13525740-20405532(probes 18388:18751)    	chr2:14353788-17013163(probes 18420:18569)    	chr2:11979077-20405532(probes 18309:18751)    	0.0088869	   0.0088869	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	1.4384	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8801	0	0	0	0	0	0	0	0.7037	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.4836	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5111	0	
MSKCC_focal_080606	Amplification Peak 4 - log2 ratios	3q26.33 	chr3:182196029-183245654(probes 47566:47616)	chr3:182340790-182775401(probes 47573:47590)	chr3:179192711-183245654(probes 47340:47616)	0.003898	    0.003898	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4763	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5011	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5433	0.9257	0	
MSKCC_focal_080606	Amplification Peak 5 - log2 ratios	4q12    	chr4:53846353-53951479(probes 52217:52223)    	chr4:53846353-53913375(probes 52217:52219)    	chr4:48777989-58655452(probes 52086:52557)    	8.9243e-20	     0.11848	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	1.4384	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4735	0	0	1.5754	0	1.4316	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6364	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4859	1.4877	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9293	0	0	0	0.672	0	0	0	0	0.7924	0	0	1.5517	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4709	0	0	0	0	0	1.0731	0	1.5318	0	0	0	0	0	0	0	0	0	0	0	0	1.4959	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.376	0	0	0	
MSKCC_focal_080606	Amplification Peak 6 - log2 ratios	4q12    	chr4:54498653-54580398(probes 52275:52284)    	chr4:54525205-54546894(probes 52277:52278)    	chr4:48777989-58655452(probes 52086:52557)    	3.7223e-44	  3.7223e-44	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	1.4384	0	0	0	0	1.4834	0	0	0	0	0	0	1.0435	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4735	0	0	1.5754	0	1.4316	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6364	0	0	0	0	0	0	0	0	0	0	0	0	0	1.446	0	0	0	0	1.4859	1.4877	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4972	0	0	0	0	0	0	1.3221	0	0	0	0.672	0	0	0	0.8232	1.4927	0	0	1.5517	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3508	1.3982	0	1.4887	0	1.4709	0	0	1.4791	0	0	1.5011	0	1.5318	0	0	0	0	0	0	0	0	0	0	0	0	1.4959	0	0	0	0	0	0	0	0	0	0	0.6133	0	0	0	0	0.5607	0	0	0	0	0	0	0	0	0	0	0	0	1.5006	0	0	0	0	0.376	0	0	0	
MSKCC_focal_080606	Amplification Peak 7 - log2 ratios	7p22.3  	chr7:1-1802162(probes 85724:85855)               	chr7:1434712-1481580(probes 85811:85814)        	chr7:1434712-1481580(probes 85811:85814)        	0.11805	     0.11805	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5073	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0671	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.93171	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 8 - log2 ratios	7p22.2  	chr7:2290956-2748042(probes 85918:85954)        	chr7:2458198-2689263(probes 85935:85948)        	chr7:2458198-2689263(probes 85935:85948)        	0.13614	     0.13614	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7602	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0608	0.7141	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.802	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 9 - log2 ratios	7p22.1  	chr7:4866301-5287705(probes 86124:86166)        	chr7:5153182-5287705(probes 86157:86166)        	chr7:5153182-5287705(probes 86157:86166)        	0.23547	     0.23547	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5073	0	0	0	0	0	0	0	0	0.7628	0	0	0	0	0	0	0	0	0.7522	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 10 - log2 ratios	7p22.1  	chr7:5373928-5781548(probes 86176:86200)        	chr7:5409969-5761426(probes 86179:86198)        	chr7:5373928-5761426(probes 86176:86198)        	0.108	       0.108	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.712	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0777	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0252	0	0	0	0	0.8106	0	
MSKCC_focal_080606	Amplification Peak 11 - log2 ratios	7p15.1  	chr7:28659445-28994331(probes 87778:87813)    	chr7:28842364-28911521(probes 87802:87804)    	chr7:28554394-29020877(probes 87764:87817)    	0.0047396	   0.0047396	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7693	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9793	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6928	0	0	0	0	0	0	0	0	0	0	1.1334	0	0	0	0	0	0	0	0	0	0	0	0.4405	0	0	0	0	0	0	0	0	0	0	0	1.3457	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 12 - log2 ratios	7p14.3  	chr7:32667226-33014139(probes 88175:88203)    	chr7:32772616-32957019(probes 88181:88199)    	chr7:32667226-33164807(probes 88175:88222)    	0.019365	    0.047608	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6642	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.81019	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1071	0	0	0	0	0	0	0	0	0	0	0	0.4405	0	0	0	0	0	0	0	0	0	0	0	1.5011	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 13 - log2 ratios	7p14.1  	chr7:37753305-38416859(probes 88620:88657)    	chr7:37790105-38221153(probes 88623:88654)    	chr7:37790105-38221153(probes 88623:88654)    	0.11805	     0.11805	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.5609	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4556	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5089	0	0	0	
MSKCC_focal_080606	Amplification Peak 14 - log2 ratios	7p14.1  	chr7:40292888-41010932(probes 88839:88908)    	chr7:40292888-40330705(probes 88839:88842)    	chr7:40292888-40330705(probes 88839:88842)    	0.12525	     0.12525	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0329	0	0	0	0	0	0	0	0	0	0	0	0.9054	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5089	0	0	0	
MSKCC_focal_080606	Amplification Peak 15 - log2 ratios	7p12.1  	chr7:51621136-52262570(probes 89696:89712)    	chr7:51923946-52262570(probes 89705:89712)    	chr7:50422510-62265725(probes 89601:89985)    	6.544e-06	    0.043385	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	1.5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8114	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4438	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1741	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4987	0	0	0.6403	0	0	0	0	0	0	0	0	0	0	0	0	1.1394	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 16 - log2 ratios	7p12.1  	chr7:52601168-52798845(probes 89725:89728)    	chr7:52601168-52798845(probes 89725:89728)    	chr7:50422510-62265725(probes 89601:89985)    	3.7582e-13	    0.035124	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8114	0	0	1.5013	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4438	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1741	0	0	0	0	0	0	0	0	0	0	0	1.5138	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6403	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5078	0	1.329	0	0	0	0	0	0	0	0	1.4999	0	0	0	0	0	0	0	0	0	0	0	0	1.4947	1.5089	0	0	0	
MSKCC_focal_080606	Amplification Peak 17 - log2 ratios	7p11.2  	chr7:54892258-55065093(probes 89821:89827)    	chr7:54892258-55044147(probes 89821:89824)    	chr7:50422510-62265725(probes 89601:89985)    	1.0725e-230	 1.0725e-230	focal	Actual Log2 Ratio Given	0	1.5015	0	1.505	0	0	0	0	1.4917	1.5076	1.5	0	0	0	0	0	0	0	0	1.4876	0	1.4879	1.5073	0	1.4763	0	0	0	0	0	0	1.4985	1.4894	0	0	1.5013	0	0	0	0	1.4854	0	0	0	0	1.5019	0	1.5076	0	1.5207	0	0	0	0	0	1.4942	0	1.5032	0	1.5016	0	0	1.5133	1.4985	1.5133	1.5063	0	0	0	0	0	0	1.4829	0	0	0	1.4958	1.4926	0	1.1741	0	0	1.4937	0	1.4936	1.5269	1.4942	1.5294	0	0	1.4867	1.5138	1.5038	1.4983	0	0	1.4972	1.5012	0	1.494	0	1.5073	1.4987	1.0009	1.5131	1.5092	0	0	0	1.4949	0	1.5078	1.2723	0	0	0	1.5112	1.5037	1.0366	1.5195	1.5096	0	0	0	1.1808	1.5316	0	0	0	1.5052	1.4933	0	1.5432	0	1.4887	1.4652	0	1.5018	0	0	0	0	1.5011	1.6048	0	1.5204	0	0	0	1.5324	1.5115	0	1.498	1.4735	0	0	0	0	0	1.4944	0	0	1.5474	1.4902	1.5157	1.5107	1.5078	0	1.3756	0	1.5404	0	0.7489	1.162	0	0	0	1.4999	0	1.4991	0	0	1.5265	0	0	0	0	1.4589	1.5157	1.5583	1.4947	1.5089	0	1.5111	0	
MSKCC_focal_080606	Amplification Peak 18 - log2 ratios	7p11.2  	chr7:55737153-55940686(probes 89870:89884)    	chr7:55768248-55840343(probes 89872:89874)    	chr7:50422510-62265725(probes 89601:89985)    	2.2052e-51	    0.037709	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	1.5076	0	0	0	0	0	0	0	0	0	0	0	1.4879	1.5073	0	1.4763	0	0	0	0	0	0	0	0.6982	0	0	0	0	0	0	0	0.7849	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4942	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1741	0	0	1.4937	0	1.4936	0	0	1.5294	0	0	0	0.9787	0	0	0	0	0	0	0	0	0	0	1.4987	1.0009	0	0.5894	0	0	0	0	0	0	0	0	0	0	0	0	1.0193	1.5195	1.5096	0	0	0	0	0.9067	0	0	0	1.5052	1.4933	0	1.5432	0	0	0	0	1.5018	0	0	0	0	1.5011	0	0	1.406	0	0	0	0.8717	0	0	0	1.4735	0.2725	0	0	0	0	0	0	0	0	0	0.78183	0	0.98	0	0	0	0	0	0	0	0	0	0	0	0	1.4991	0	0	0	0	0	0	0	0	0	0	1.4947	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 19 - log2 ratios	7p11.2  	chr7:56461116-57213587(probes 89927:89949)    	chr7:56575990-56742062(probes 89942:89945)    	chr7:50422510-62265725(probes 89601:89985)    	7.8049e-14	    0.034077	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4763	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4942	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4937	0	1.1386	0	0	0	0	0	0	0.9787	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3582	0	0	0	0	0	0	1.5432	0	0	0	0	1.046	0	0	0	0	1.5011	0	0	1.1895	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4947	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 20 - log2 ratios	7q11.22 	chr7:67486026-67832262(probes 90266:90274)    	chr7:67621685-67810142(probes 90270:90273)    	chr7:67621685-67832262(probes 90270:90274)    	0.036545	    0.093869	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7248	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6095	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4709	0	0	0	0	0	1.5011	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 21 - log2 ratios	7q21.11 	chr7:77353089-78118620(probes 90946:91031)    	chr7:77709849-77926786(probes 90985:91009)    	chr7:77353089-78118620(probes 90946:91031)    	0.021055	    0.021055	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4352	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7952	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7575	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5011	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 22 - log2 ratios	7q21.2  	chr7:91846145-92377128(probes 91924:91982)    	chr7:92016060-92377128(probes 91946:91982)    	chr7:91581084-92852637(probes 91895:92021)    	7.0468e-05	  7.0468e-05	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4003	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7595	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7618	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4709	0	0	0	0	0	1.4939	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6781	0	0	0	0	0	0	0	0	0	0	0.6697	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 23 - log2 ratios	7q31.1  	chr7:111998433-112446642(probes 93660:93683)	chr7:112211941-112269761(probes 93676:93680)	chr7:112211941-112269761(probes 93676:93680)	0.11805	     0.11805	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1163	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5318	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.861	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 24 - log2 ratios	7q31.2  	chr7:116093418-116315388(probes 93890:93912)	chr7:116093418-116295557(probes 93890:93910)	chr7:116042293-117489164(probes 93887:94034)	2.465e-10	   2.465e-10	focal	Actual Log2 Ratio Given	0	0	0	0	1.0147	0	0	0	0	0	0	1.4834	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5605	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0914	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3855	0	1.5153	0	0	0	0	0	0	0	0	1.5206	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9818	0	0	1.5089	0	0	0	
MSKCC_focal_080606	Amplification Peak 25 - log2 ratios	7q31.31 	chr7:119760230-120536618(probes 94126:94208)	chr7:119794759-119825699(probes 94130:94132)	chr7:119760230-119876966(probes 94126:94138)	0.028869	     0.12623	focal	Actual Log2 Ratio Given	0	0	0	0	1.0147	0	0	0	0	0	0	1.4834	0	0	0	0	0	0	0	0	0	0	0	0	0.42868	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5089	0	0	0	
MSKCC_focal_080606	Amplification Peak 26 - log2 ratios	7q32.2  	chr7:128871145-129533543(probes 94891:94951)	chr7:129306632-129424700(probes 94929:94938)	chr7:128832895-129533543(probes 94887:94951)	0.031806	    0.096368	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0013	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9548	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6178	0	0	0	0	0	0	0	0	0	0	0	1.107	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7093	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 27 - log2 ratios	7q33    	chr7:133008083-133713654(probes 95265:95337)	chr7:133103607-133125992(probes 95277:95278)	chr7:133008083-133713654(probes 95265:95337)	0.014789	    0.054774	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.435	0	0	0	0	1.0456	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7093	0	0	0	0	0	0	0	0	1.5089	0	0	0	
MSKCC_focal_080606	Amplification Peak 28 - log2 ratios	7q34    	chr7:141928582-142056340(probes 96116:96120)	chr7:141928582-142021347(probes 96116:96116)	chr7:141765118-142217405(probes 96103:96126)	1.2484e-05	  7.3608e-05	focal	Actual Log2 Ratio Given	0	0.9539	0	0	0	0	0	0.63363	0.6944	0	0	0	0.7695	0	0	0	0	0	0	0	0	0	0	0	0.3405	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1568	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6434	0	1.5605	0	0	0	0	0	0	0.46026	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7162	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 29 - log2 ratios	7q36.1  	chr7:152069872-152162095(probes 96987:96991)	chr7:152069872-152135222(probes 96987:96989)	chr7:151783620-152837289(probes 96969:97019)	1.8408e-07	  1.8408e-07	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3581	0	0	0	0	0.867	1.0406	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4854	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0551	0	0	0	0	0	0	0	0	0	0	0	1.4813	0	0	0	0.5531	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2887	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7796	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6901	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 30 - log2 ratios	11p13   	chr11:32391331-33598207(probes 128164:128274)	chr11:32453029-32474687(probes 128173:128173)	chr11:32391331-32474687(probes 128164:128173)	0.06939	     0.06939	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5155	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8146	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5089	0	0	0	
MSKCC_focal_080606	Amplification Peak 31 - log2 ratios	12p13.32	chr12:3801255-4357939(probes 136339:136381)    	chr12:4049649-4303446(probes 136355:136374)    	chr12:3801255-4357939(probes 136339:136381)    	0.0065511	   0.0065511	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9534	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5278	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5131	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2304	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 32 - log2 ratios	12q13.11	chr12:44711372-45058800(probes 139298:139315)	chr12:44899814-44919711(probes 139308:139308)	chr12:44899814-44919711(probes 139308:139308)	0.054452	    0.054452	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.988	0	0	0	0	1.5013	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5078	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 33 - log2 ratios	12q13.13	chr12:49954935-50899805(probes 139844:139936)	chr12:50151461-50728918(probes 139869:139926)	chr12:50151461-50373447(probes 139869:139887)	0.12886	     0.23419	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5517	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3831	1.4709	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 34 - log2 ratios	12q13.13	chr12:50773842-51191351(probes 139936:139967)	chr12:50934661-51108123(probes 139944:139952)	chr12:50934661-51108123(probes 139944:139952)	0.12525	     0.12525	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5517	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3831	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5089	0	0	0	
MSKCC_focal_080606	Amplification Peak 35 - log2 ratios	12q13.3 	chr12:55962882-56091501(probes 140595:140604)	chr12:56030455-56056483(probes 140600:140600)	chr12:55948032-58277820(probes 140594:140740)	1.2623e-09	    0.019365	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4774	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4593	0	0	0	0.7958	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5078	1.4927	0	0	1.5517	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3874	0	0	0	0	0	0	0	1.6048	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2066	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 36 - log2 ratios	12q13.3 	chr12:56152449-56219659(probes 140622:140636)	chr12:56184063-56208103(probes 140629:140633)	chr12:55948032-58277820(probes 140594:140740)	2.2087e-29	  9.4347e-05	focal	Actual Log2 Ratio Given	0	1.5015	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4774	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4593	0	0	0	0.7958	0	0	0	0	0	0	0	1.5278	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4983	0	0	0	1.5012	0	0	0	0	0	0	1.5131	0	0	0	0	0	0	1.4231	1.4927	0	0	1.5517	0	1.5037	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3874	1.4709	0	1.5127	0	0	0	1.5011	1.6048	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2066	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1496	1.5433	0	0	
MSKCC_focal_080606	Amplification Peak 37 - log2 ratios	12q14.1 	chr12:56373677-56478011(probes 140659:140663)	chr12:56373677-56466133(probes 140659:140661)	chr12:55948032-58277820(probes 140594:140740)	5.6207e-44	  5.6207e-44	focal	Actual Log2 Ratio Given	0	1.5015	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5073	0	0	0	0	0	0	0	1.4774	0	0	0	0	0	1.5754	0	0	0	0	0	0	0	0	0	1.328	1.5076	0	0	0.7958	0	0	0	0	0	0	0	1.5278	0	0	0	0	0	0	0	0	0	0	0	0	1.5086	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5039	0	0	0	0	1.4983	0	0	0	1.5012	0	0	0	0	0	0	1.5131	0	0	0	0	0	0	1.5078	1.4927	0	0	1.5517	0	1.5037	0	0	0	0	0	0	0	0	0	0	0	0	1.4933	0	0	0	0	0.3874	1.4709	0	1.5127	0	0	0	1.5011	1.6048	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2066	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5433	0	0	
MSKCC_focal_080606	Amplification Peak 38 - log2 ratios	12q14.1 	chr12:57237830-57361795(probes 140696:140702)	chr12:57270522-57319722(probes 140698:140700)	chr12:55948032-58277820(probes 140594:140740)	1.5603e-08	    0.039756	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4774	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4592	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3758	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5078	-0.9057	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3874	1.2023	0	0	0	0	0	0	1.6048	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5089	0	0	0	
MSKCC_focal_080606	Amplification Peak 39 - log2 ratios	12q14.1 	chr12:59528398-59745647(probes 140801:140806)	chr12:59553813-59714965(probes 140802:140805)	chr12:59415651-59745647(probes 140798:140806)	0.00013215	   0.0076214	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0245	0	0	0	0	0	0	0	1.3871	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.5991	0	0	0	0	0	0	0	0	0	0	0	-0.66336	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5078	1.4927	0	0	1.5517	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3874	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 40 - log2 ratios	12q14.1 	chr12:60673436-60892166(probes 140854:140873)	chr12:60734358-60824865(probes 140860:140866)	chr12:60422404-61169773(probes 140834:140900)	0.0035293	      0.1027	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4774	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4593	0	0	0	0	0	0	0	0	0	0	0	-0.66336	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.807	0	0	0	0	0	0	0	0	0	0	-0.8527	0	0	0	0	1.3837	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3874	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 41 - log2 ratios	12q14.2 	chr12:62822779-62942854(probes 141014:141024)	chr12:62848019-62885049(probes 141017:141019)	chr12:62602437-63438190(probes 140991:141069)	2.998e-07	  3.1568e-05	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4774	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4593	0	0	0	0	0	0	0	0	0	0	0	-0.65856	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5073	0	0	0	0	0	0	0	0	0	0	1.4927	0	0	1.5517	0	1.5037	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3874	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 42 - log2 ratios	12q14.3 	chr12:63453068-63617542(probes 141072:141086)	chr12:63478632-63497752(probes 141075:141075)	chr12:63453068-63617542(probes 141072:141086)	0.011017	     0.23547	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4774	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4593	0	0	0	0	0	0	0	0	0	0	0	-0.65856	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.8591	0	0	1.5517	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3874	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 43 - log2 ratios	12q14.3 	chr12:64154541-64266035(probes 141134:141141)	chr12:64161994-64205630(probes 141135:141135)	chr12:64125224-64266035(probes 141131:141141)	0.00096666	    0.018183	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4774	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.65856	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4983	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.8591	0	0	1.5517	0	1.5037	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 44 - log2 ratios	12q14.3 	chr12:64394241-64787168(probes 141155:141185)	chr12:64489044-64621599(probes 141167:141177)	chr12:64489044-64787168(probes 141167:141185)	0.019365	      0.1849	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4774	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.65856	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.8591	0	0	1.5517	0	0	0	0	1.5096	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 45 - log2 ratios	12q14.3 	chr12:65503913-65867893(probes 141251:141263)	chr12:65555704-65680459(probes 141254:141257)	chr12:65305673-66246614(probes 141239:141281)	6.544e-06	  0.00022094	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4774	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.65856	0	0	0	0	0	0	0	1.4813	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6667	0	0	0	0	0	0	0	0	0	0	-0.8591	0	0	1.5517	0	1.5037	0	0	1.5096	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 46 - log2 ratios	12q15   	chr12:66798931-66855535(probes 141308:141312)	chr12:66815929-66843841(probes 141309:141310)	chr12:66798931-66855535(probes 141308:141312)	0.0016024	     0.02642	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4774	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4593	0	0	0	0	0	0	0	0	0	0	0	-0.65856	0	0	0	0	0	0	0	1.4813	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.8591	0	0	0	0	0	0	0	1.5096	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 47 - log2 ratios	12q15   	chr12:67144798-67231513(probes 141345:141349)	chr12:67173217-67220042(probes 141347:141348)	chr12:67041821-69812767(probes 141339:141573)	1.7259e-06	  6.6741e-05	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5008	0	0	0	0	1.4774	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4593	0	0	0	0	0	0	0	0	0	0	0	-0.65856	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5021	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.8591	0	0	1.5517	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2456	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 48 - log2 ratios	12q15   	chr12:67445318-67565839(probes 141378:141384)	chr12:67445318-67543829(probes 141378:141383)	chr12:67041821-69812767(probes 141339:141573)	3.6986e-35	  7.3272e-33	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4615	0	0	0	0	1.5008	0	0	0	0	1.4774	0	0	0	0	1.5013	0	0	0	0	0	0	0	0	0	0	1.4593	1.5076	0	0	0	0	0	0	0	0	0	0	-0.65856	0	0	0	0	0	0	0	1.4813	0	0	0	1.5001	0	0	1.5021	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4983	0	0	0	0	0	0	0	1.5073	0	0	0	0	0	0	0	0	0	1.5078	1.4927	0	0	1.5517	0	1.5037	0	0	1.5096	0	0	0	0	0	0	0	0	0	1.4933	0	0	0	1.3982	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.518	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5089	0	0	0	
MSKCC_focal_080606	Amplification Peak 49 - log2 ratios	12q15   	chr12:67950429-68008694(probes 141412:141415)	chr12:67957411-67972226(probes 141413:141413)	chr12:67041821-69812767(probes 141339:141573)	7.8049e-14	   0.0010373	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.1651	0	0	0	0	0	0	0	0	0	1.4774	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5076	0	0	0	0	0	0	0	0	0	0	-0.65856	0	0	0	0	0	0	0	1.4813	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4983	0	0	0	0	0	0	0	1.2792	0	0	0	0	0	0	0	0	0	0	1.4927	0	0	1.5517	0	0	0	0	1.5096	0	0	0	0	0	0	0	0	0	1.4933	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.518	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 50 - log2 ratios	12q15   	chr12:68263568-68387706(probes 141440:141455)	chr12:68275908-68334428(probes 141442:141447)	chr12:67041821-69812767(probes 141339:141573)	1.5603e-08	     0.23547	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4774	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4593	1.5076	0	0	0	0	0	0	0	0	0	0	-0.65856	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4983	0	0	0	0	0	0	0	1.5073	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5517	0	0	0	0	1.5096	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 51 - log2 ratios	12q15   	chr12:68782919-68968087(probes 141491:141499)	chr12:68858382-68910096(probes 141493:141493)	chr12:67041821-69812767(probes 141339:141573)	6.5517e-07	    0.017509	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4774	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5076	0	0	0	0	0	0	0	0	0	0	-0.65856	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5073	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5517	0	1.5037	0	0	1.5096	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 52 - log2 ratios	12q15   	chr12:69204521-69559973(probes 141523:141558)	chr12:69289114-69336822(probes 141532:141535)	chr12:67041821-69812767(probes 141339:141573)	2.6351e-05	    0.017275	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4774	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5076	0	0	0	0	0	0	0	0	0	0	1.5278	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5517	0	1.5037	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Amplification Peak 53 - log2 ratios	12q15   	chr12:69326377-69855883(probes 141536:141577)	chr12:69604988-69678176(probes 141567:141568)	chr12:67041821-69812767(probes 141339:141573)	0.0010328	      0.2081	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4774	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5076	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4813	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5517	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Deletion Peak 1 - log2 ratios	1p36.23 	chr1:7589630-8010806(probes 339:377)                	chr1:7920359-7958899(probes 369:371)                	chr1:7735057-8103569(probes 345:385)                	0.0019412	   0.054138	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4867	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5146	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4596	0	0	0	0	0	-0.8564	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Deletion Peak 2 - log2 ratios	1p36.23 	chr1:8478288-8575595(probes 411:417)                	chr1:8508459-8575595(probes 413:417)                	chr1:8103571-9360698(probes 387:501)                	2.3056e-06	 2.3056e-06	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4867	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9396	0	0	0	0	0	0	0	0	0	0	-1.4962	0	0	0	0	0	-0.4017	0	0	0	0	0	0	0	0	0	0	0	-0.7944	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4596	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4417	0	0	0	0	0	
MSKCC_focal_080606	Deletion Peak 3 - log2 ratios	1p33    	chr1:51003451-51246870(probes 4204:4226)          	chr1:51003451-51231085(probes 4204:4225)          	chr1:50845731-51315432(probes 4189:4228)          	1.5515e-07	 1.5515e-07	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4246	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5171	0	0	0	0	0	0	0	0	-1.5123	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4855	0	0	-0.7644	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4682	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.7893	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Deletion Peak 4 - log2 ratios	6q26    	chr6:162222678-165387742(probes 85156:85329)    	chr6:163174063-164079632(probes 85246:85286)    	chr6:163174063-164079632(probes 85246:85286)    	0.069648	   0.069648	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0332	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.631	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0148	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0277	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Deletion Peak 5 - log2 ratios	9p22.1  	chr9:19703884-19997630(probes 108554:108570)      	chr9:19732117-19760115(probes 108555:108556)      	chr9:19448799-30588349(probes 108531:109182)      	3.2887e-21	 4.9512e-05	focal	Actual Log2 Ratio Given	0	0	0	-1.495	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5124	0	0	0	0	0	0	0	0	0	0	0	-1.2855	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4981	0	0	0	0	0	0	0	0	-1.1652	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0613	0	0	-1.5171	0	0	0	-1.5042	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.4059	0	-1.4962	0	0	0	0	0	0	0	0	0	-1.5013	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4805	0	0	0	0	0	0	0	0	0	-1.4948	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5065	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Deletion Peak 6 - log2 ratios	9p21.3  	chr9:20661716-20936611(probes 108620:108657)      	chr9:20883454-20906835(probes 108654:108654)      	chr9:19448799-30588349(probes 108531:109182)      	2.2651e-55	  0.0095553	focal	Actual Log2 Ratio Given	0	0	0	-1.495	0	0	0	-1.5255	0	0	0	0	0	0	-1.5175	0	0	0	0	-1.5124	0	-1.5121	0	0	0	0	0	0	0	0	0	-1.4011	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4981	0	0	0	0	0	0	0	0	-1.1652	0	0	-1.4968	0	0	0	0	0	0	-1.4867	0	0	0	0	-1.0705	0	0	-1.5171	0	0	0	-1.5042	0	0	0	0	0	-1.4021	0	0	0	0	0	0	0	-0.4059	0	-1.4962	0	0	0	0	0	0	-1.506	0	0	-1.5013	0	0	0	0	0	0	0	0	0	0	-1.5146	0	0	0	0	0	-1.4805	0	0	0	0	0	0	0	0	0	-1.4948	0	-1.4946	-1.4568	0	0	0	0	0	0	0	0	0	0	0	0	-1.4796	0	0	-1.0479	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4922	-1.5065	0	0	0	0	0	0	0	0	0	-1.5001	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Deletion Peak 7 - log2 ratios	9p21.3  	chr9:21957549-21980521(probes 108760:108761)      	chr9:21968347-21980521(probes 108761:108761)      	chr9:19448799-30588349(probes 108531:109182)      	0	        NaN	focal	Actual Log2 Ratio Given	-1.3339	0	0	-1.495	0	0	-1.5616	-1.5255	-1.5083	-1.273	-1.5	-1.5166	0	0	-1.5175	0	0	-0.8712	-1.4845	-1.5124	0	-1.5121	0	-1.5021	-1.5237	0	0	0	-0.5959	0	0	-1.4011	-1.4211	0	0	-1.4987	0	0	0	0	0	0	-0.8396	-1.3968	0	-1.4981	0	0	-1.5289	-1.4793	0	-0.947	0	0	-1.1652	-1.5058	0	-1.4968	0	-1.0783	0	-1.4395	-1.3485	-1.5015	-1.4867	-1.4937	0	-1.4874	-0.83124	-1.0705	0	0	-1.5171	0	0	0	-1.5042	-1.5074	0	-1.4936	-1.5141	-1.5123	-1.4021	0	-1.5064	-1.4731	-1.5058	-0.92649	0	0	-0.4059	-1.1598	-1.4962	0	0	0	-1.5028	-1.4988	0	-1.506	0	0	-1.5013	-1.1337	0	-1.4908	-1.1574	-0.9416	0	-1.0904	-1.4611	0	0	-1.5146	0	0	-0.54869	0	0	-1.4805	-1.4904	-1.565	0	-0.5822	-1.068	0	0	-0.8225	0	-1.4948	0	-1.4946	-1.4568	0	-1.3701	-1.3342	0	0	0	-1.5209	-0.9668	-1.4918	0	0	-1.4682	-1.4796	-1.4847	0	-1.0479	0	-1.4885	-1.482	-1.502	-1.5265	0	-1.0124	-1.1776	-1.5041	-1.5201	0	0	0	0	-1.5098	0	-1.4893	-1.4922	-1.5065	-0.7558	0	-1.4596	0	0	-0.7058	-1.5387	-0.8691	-1.3616	-1.5001	-0.7518	-1.5009	0	-1.5432	-1.4735	-1.5245	-1.4933	-1.3741	0	-1.5411	-1.4843	-1.4417	-1.5053	0	0	0	-1.1928	
MSKCC_focal_080606	Deletion Peak 8 - log2 ratios	9p21.3  	chr9:22346408-22797749(probes 108779:108792)      	chr9:22462726-22527009(probes 108787:108788)      	chr9:19448799-30588349(probes 108531:109182)      	1.9555e-134	   0.066389	focal	Actual Log2 Ratio Given	-0.7774	0	0	-1.495	0	0	-1.5616	0	0	-1.273	-1.5	-1.5166	0	0	0	0	0	0	-1.4845	0	0	-1.5121	0	0	-1.5237	0	0	0	-0.5959	0	0	-1.3438	0	0	0	-1.4987	0	0	0	0	0	0	-0.8396	0	0	0	0	0	-1.5289	-1.4793	0	-0.947	0	0	0	-1.5058	0	-1.4968	0	0	0	0	0	0	-1.4867	-1.4937	0	0	-0.89964	0	0	0	-1.5171	0	0	0	-1.5042	-1.5074	0	0	-1.5141	-1.5123	-1.4021	0	-1.5064	-1.4731	-1.5058	-0.92649	0	0	-0.4059	0	-1.4962	0	0	0	0	0	0	-1.506	0	0	0	0	0	-1.4908	-1.1574	0	0	-1.0904	0	0	0	0	0	0	0	0	0	0	0	-1.565	0	-0.8448	0	0	0	-0.8225	0	-1.4948	0	-1.4946	-1.4568	0	-1.3701	0	0	0	0	0	0	0	0	0	0	0	-1.4847	0	-1.0479	0	0	0	0	-0.9027	0	0	0	-1.5041	-1.5201	0	0	0	0	0	0	0	-1.4922	0	0	0	-1.4596	0	0	0	0	-0.8691	-1.3616	-1.5001	0	0	0	-1.5432	0	0	0	0	0	-1.5411	0	-1.4417	-1.5053	0	0	0	-1.1928	
MSKCC_focal_080606	Deletion Peak 9 - log2 ratios	9p21.3  	chr9:23603550-23751946(probes 108825:108836)      	chr9:23636700-23740647(probes 108827:108835)      	chr9:19448799-30588349(probes 108531:109182)      	3.0575e-87	 3.4001e-06	focal	Actual Log2 Ratio Given	-0.7774	0	0	-1.495	0	0	-1.5616	0	0	-1.4924	-1.5	0	0	0	0	0	0	0	-1.4845	0	0	-1.5121	0	0	-1.5237	0	0	0	-0.5959	0	0	-1.4109	0	0	-1.3513	-1.4987	0	0	0	0	0	0	-0.8396	0	0	-1.4579	0	0	-1.5289	0	0	-0.947	0	0	0	0	0	-1.4968	0	0	0	0	0	0	-1.4867	0	0	0	-0.79554	0	0	0	0	0	0	0	0	0	0	0	-1.5141	0	-1.4021	0	0	-1.4731	0	-0.92649	0	0	-0.4059	0	-1.4962	0	0	0	0	0	0	-1.506	0	0	0	0	0	0	0	0	0	-1.0904	0	0	0	0	0	0	0	0	0	0	0	-1.565	0	-0.8448	0	0	0	-0.8225	0	-1.4948	0	0	-1.4568	0	-1.3673	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0479	0	0	0	0	0	0	0	0	0	-1.5201	0	0	0	0	0	0	0	-1.4922	0	0	0	-1.4596	0	0	0	0	0	-1.3616	0	0	0	0	-1.5432	0	0	0	0	0	-1.5411	0	-1.4417	-1.5053	0	0	0	-1.1928	
MSKCC_focal_080606	Deletion Peak 10 - log2 ratios	9p21.2  	chr9:26246130-26433721(probes 108914:108921)      	chr9:26362321-26433721(probes 108919:108921)      	chr9:19448799-30588349(probes 108531:109182)      	3.6537e-42	 2.3365e-09	focal	Actual Log2 Ratio Given	-0.7774	0	0	0	0	0	0	0	0	-1.0275	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5237	0	0	0	-0.5959	0	0	-1.3496	0	0	0	-1.4987	0	0	0	0	0	0	-0.8396	0	0	-1.4981	0	0	0	0	0	-0.947	0	0	0	0	0	-1.4968	0	0	0	0	0	0	-1.4867	0	0	0	-0.83804	0	0	0	0	0	0	0	0	0	0	0	-1.5141	0	0	0	0	-1.4731	0	-1.0224	0	0	-0.4059	0	0	0	0	0	0	0	0	-1.4935	0	0	0	0	0	0	0	0	0	-1.0904	0	0	0	0	0	0	0	0	0	0	0	-1.565	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0896	0	0	0	0	0	0	0	-1.0114	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.3616	0	0	0	0	0	0	0	0	-1.5489	0	-1.5361	0	-1.4417	-1.5053	0	0	0	0	
MSKCC_focal_080606	Deletion Peak 11 - log2 ratios	9p21.2  	chr9:27965910-28223218(probes 109048:109073)      	chr9:28016856-28145063(probes 109054:109065)      	chr9:19448799-30588349(probes 108531:109182)      	1.099e-14	  0.0040552	focal	Actual Log2 Ratio Given	-0.7774	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5237	0	0	0	0	0	0	0	0	0	0	-1.4987	0	0	0	0	0	0	-0.8396	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4867	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4731	0	-1.0045	0	0	-0.4059	0	0	0	0	0	0	0	0	-1.4935	0	0	0	0	0	0	0	-0.9114	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4568	0	0	0.4022	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5361	0	0	0	0	0	0	0	
MSKCC_focal_080606	Deletion Peak 12 - log2 ratios	10q23.2 	chr10:89564119-89630077(probes 121715:121720)    	chr10:89580502-89600865(probes 121717:121717)    	chr10:89338166-91007119(probes 121691:121837)    	1.8008e-20	 1.8008e-20	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9332	0	0	-1.1607	-1.5121	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5029	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.3826	0	0	0	0	0	0	0	0	0	0	0	0	-1.493	0	-0.7579	-1.4885	-1.482	0	0	0	0	0	-1.5041	0	0	0	0	0	0	0	0	0	0	-0.8003	0	0	0	-1.4933	0	0	0	0	0	-0.8063	0	0	0	0	0	0	0	0	0	0	0	-1.5053	0	0	-0.61226	0	
MSKCC_focal_080606	Deletion Peak 13 - log2 ratios	10q23.31	chr10:89791068-90182413(probes 121735:121759)    	chr10:89879206-90017816(probes 121738:121741)    	chr10:89338166-91007119(probes 121691:121837)    	4.6065e-12	   0.019551	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.1607	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.3826	-1.3504	0	0	0	0	0	0	0	0	0	0	0	-1.493	0	-1.1859	0	-1.482	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4933	0	0	0	0	0	-0.8063	0	0	0	0	0	0	0	0	0	0	0	-1.5053	0	0	-0.62912	0	
MSKCC_focal_080606	Deletion Peak 14 - log2 ratios	10q26.3 	chr10:133725315-135374737(probes 125563:125571)	chr10:135041192-135374737(probes 125567:125571)	chr10:127634833-135061899(probes 125069:125570)	2.6761e-08	 2.6761e-08	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0732	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.7354	0	0	0	0	0	0	-0.5134	0	0	0	0	-0.9099	0	0	-0.3419	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.8195	0	0	0	0	0	0	0	0	0	0	0	0	-0.8632	0	-1.0424	0	0	0	0	0	0	0	0	0	0	0	-1.019	0	0	0	0	0	0	0	0	0	0	0	-0.6191	0	0	0	0	0	0	0	0	0	0	0	-0.6958	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9748	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Deletion Peak 15 - log2 ratios	13q14.2 	chr13:47761537-47963281(probes 148966:148988)    	chr13:47845533-47913448(probes 148976:148982)    	chr13:47761537-48059199(probes 148966:148996)    	0.00048201	 0.00048201	focal	Actual Log2 Ratio Given	-0.5781	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5289	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.7477	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4923	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5245	0	0	0	0	0	0	0	0	0	0	0	
MSKCC_focal_080606	Deletion Peak 16 - log2 ratios	17q11.2 	chr17:26424461-26669740(probes 174741:174766)    	chr17:26532555-26588738(probes 174753:174755)    	chr17:26532555-26588738(probes 174753:174755)    	0.16931	    0.16931	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.1321	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.7106	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.2876	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 1	1p36.12 	chr1:20907696-20932942(probes 9453:9470)            	chr1:20907696-20924301(probes 9453:9468)            	chr1:20907696-20924301(probes 9453:9468)            	0.15893	     0.15893	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 2	1q22    	chr1:154500104-154771299(probes 72937:73054)      	chr1:154726324-154747454(probes 73029:73039)      	chr1:154726324-154747454(probes 73029:73039)      	0.07964	     0.07964	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 3	1q32.1  	chr1:202299662-203007854(probes 103166:103742)    	chr1:202413810-202818452(probes 103263:103593)    	chr1:201327874-203776864(probes 102600:104231)    	3.7759e-14	  3.7759e-14	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 4	1q44    	chr1:241044757-242809557(probes 129619:130628)    	chr1:241500278-242803774(probes 129722:130625)    	chr1:241500278-242803774(probes 129722:130625)    	0.22556	     0.22556	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 5	3q26.33 	chr3:182207550-183214620(probes 377574:378120)    	chr3:182354608-182774112(probes 377643:377870)    	chr3:182207550-183214620(probes 377574:378120)    	0.054966	    0.054966	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 6	4q12    	chr4:54506016-54554815(probes 417572:417592)        	chr4:54516108-54540980(probes 417573:417583)        	chr4:48783398-58279689(probes 416263:420171)        	2.5816e-37	  2.5815e-37	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	1	0	0	2	0	2	0	0	1	0	0	2	0	2	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	
peel_off.Broad_focal_080606	Amplification Peak 7	7p11.2  	chr7:54921812-54988715(probes 738402:738445)        	chr7:54931889-54988715(probes 738412:738445)        	chr7:52580040-62270579(probes 736781:739808)        	1.0737e-186	 1.0737e-186	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	2	0	2	2	0	2	2	2	2	0	2	2	0	2	0	0	0	2	0	0	0	0	0	2	2	0	0	2	2	0	0	2	2	0	0	2	2	2	2	2	2	0	0	0	2	2	2	0	2	0	0	0	0	2	2	2	0	2	0	0	2	0	2	0	0	0	0	2	2	2	2	2	2	0	2	2	0	0	0	2	0	2	2	0	0	0	2	0	0	0	0	0	2	2	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	2	2	2	0	0	2	0	0	2	0	0	0	0	2	2	0	0	2	2	2	0	2	2	0	0	0	2	0	0	2	0	0	2	0	2	0	2	0	0	2	0	0	0	0	0	0	0	2	0	0	0	2	2	0	2	0	2	0	0	
peel_off.Broad_focal_080606	Amplification Peak 8	7q21.2  	chr7:91681231-92433690(probes 753596:754177)        	chr7:91906552-92367835(probes 753703:754139)        	chr7:91581087-92838367(probes 753561:754370)        	0.00041973	  0.00041973	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 9	7q31.2  	chr7:116101460-116366278(probes 766578:766844)    	chr7:116101460-116296083(probes 766578:766812)    	chr7:116066994-117302075(probes 766555:767366)    	6.0276e-08	  6.0276e-08	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 10	7q34    	chr7:141671522-142213197(probes 782189:782385)    	chr7:141882384-142213197(probes 782300:782385)    	chr7:141767721-142213197(probes 782212:782385)    	0.012073	     0.15893	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 11	9q33.2  	chr9:123909128-123922105(probes 940386:940397)    	chr9:123909128-123918518(probes 940386:940392)    	chr9:123909128-123922105(probes 940386:940397)    	0.094516	    0.094516	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 12	10p14   	chr10:11469998-11489797(probes 956681:956697)      	chr10:11476552-11489797(probes 956686:956697)      	chr10:11476552-11489797(probes 956686:956697)      	0.14768	     0.14768	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 13	11p15.5 	chr11:2746514-2782638(probes 1032377:1032389)        	chr11:2746514-2782638(probes 1032377:1032389)        	chr11:2746514-2782638(probes 1032377:1032389)        	0.011515	    0.011515	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 14	11p13   	chr11:32387436-33587367(probes 1052180:1052882)    	chr11:32456077-32468027(probes 1052275:1052281)    	chr11:32456077-32468027(probes 1052275:1052281)    	0.21641	     0.21641	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 15	11q23.3 	chr11:117777604-122947921(probes 1100002:1103653)	chr11:119162161-119178931(probes 1100831:1100841)	chr11:119162161-119178931(probes 1100831:1100841)	0.1712	      0.1712	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 16	12p13.32	chr12:4036724-4303899(probes 1114165:1114419)        	chr12:4266498-4278396(probes 1114363:1114395)        	chr12:4036724-4303899(probes 1114165:1114419)        	0.012073	    0.012073	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 17	12q14.1 	chr12:56370612-56480203(probes 1143884:1143894)    	chr12:56370612-56459195(probes 1143884:1143887)    	chr12:55909438-58278467(probes 1143691:1145122)    	7.6752e-45	  7.6751e-45	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	2	2	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	1	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	2	0	2	0	0	
peel_off.Broad_focal_080606	Amplification Peak 18	12q15   	chr12:67458319-67587710(probes 1150803:1150912)    	chr12:67469546-67570534(probes 1150808:1150902)    	chr12:67030179-69844632(probes 1150542:1152400)    	2.1315e-32	  6.4528e-12	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	2	2	2	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 19	13q14.2 	chr13:47786516-47797292(probes 1211647:1211658)    	chr13:47796161-47797252(probes 1211648:1211657)    	chr13:47796161-47797252(probes 1211648:1211657)    	0.1208	      0.1208	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 20	19p13.3 	chr19:1308844-2581324(probes 1478985:1479316)        	chr19:1374673-1427814(probes 1479009:1479022)        	chr19:1308844-2581324(probes 1478985:1479316)        	0.010929	    0.010929	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 1	1p36.23 	chr1:8051998-9316594(probes 2860:3516)            	chr1:8109888-8140063(probes 2893:2908)            	chr1:8109888-8140063(probes 2893:2908)            	0.059017	   0.059017	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	
peel_off.Broad_focal_080606	Deletion Peak 2	1p33    	chr1:51018466-51238240(probes 25375:25465)      	chr1:51051237-51226466(probes 25395:25462)      	chr1:50852566-51261437(probes 25322:25477)      	2.5222e-06	 2.5222e-06	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 3	3q13.31 	chr3:117363420-117500384(probes 340110:340201)	chr3:117379569-117389782(probes 340121:340132)	chr3:117379569-117389782(probes 340121:340132)	0.1934	     0.1934	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 4	4q28.2  	chr4:130376070-130388030(probes 460606:460617)	chr4:130376070-130388030(probes 460606:460617)	chr4:130376070-130388030(probes 460606:460617)	0.15231	    0.15231	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 5	8p23.2  	chr8:3571109-3575595(probes 793812:793827)        	chr8:3571679-3575595(probes 793816:793827)        	chr8:3570501-3576688(probes 793808:793831)        	3.3338e-06	 3.3338e-06	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 6	9p21.3  	chr9:21981924-21989614(probes 892268:892271)    	chr9:21981924-21989239(probes 892268:892270)    	chr9:19473043-29283084(probes 890449:897053)    	1.165e-234	 1.165e-234	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	2	2	2	2	1	0	0	2	0	0	2	0	2	0	1	0	0	2	0	2	0	0	0	0	2	0	0	2	2	0	0	2	1	0	0	2	2	2	2	1	2	2	0	0	1	0	1	0	2	0	1	2	0	2	0	2	0	0	0	2	0	0	2	0	2	0	2	2	0	0	0	0	0	2	2	2	1	0	1	0	0	0	2	0	0	2	1	2	2	0	0	2	2	2	0	2	0	0	0	1	0	0	2	0	0	0	0	0	1	0	0	1	2	1	1	2	0	0	1	2	2	0	2	2	2	0	1	2	0	2	0	2	2	2	1	0	0	2	2	2	0	0	2	0	1	0	2	1	0	2	0	0	1	2	0	0	0	0	2	2	2	2	2	1	0	0	0	2	2	
peel_off.Broad_focal_080606	Deletion Peak 7	9p21.3  	chr9:23349613-24744813(probes 893064:893790)    	chr9:23659527-24149114(probes 893298:893624)    	chr9:19473043-29283084(probes 890449:897053)    	6.6534e-72	     0.2453	none	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	2	1	0	0	0	0	0	0	0	2	0	0	1	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	2	2	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	2	0	0	0	0	0	0	0	2	0	0	1	0	0	0	2	0	0	2	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	2	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	2	0	
peel_off.Broad_focal_080606	Deletion Peak 8	10p13   	chr10:12619611-12624214(probes 957366:957377)  	chr10:12621793-12624214(probes 957372:957377)  	chr10:12619466-12639699(probes 957365:957393)  	3.5991e-07	 3.5991e-07	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 9	10p11.23	chr10:30130233-30143776(probes 969617:969629)  	chr10:30130233-30142968(probes 969617:969627)  	chr10:30130233-30142968(probes 969617:969627)  	0.00069677	   0.020841	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 10	10q11.21	chr10:44697479-44739338(probes 976180:976198)  	chr10:44697846-44739338(probes 976181:976198)  	chr10:44688039-44739338(probes 976171:976198)  	0.0013393	   0.021021	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 11	10q11.23	chr10:52980195-52984601(probes 979134:979157)  	chr10:52980237-52984601(probes 979135:979157)  	chr10:52980195-52984601(probes 979134:979157)  	0.005018	   0.005018	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 12	10q23.1 	chr10:83799383-83816617(probes 997921:997936)  	chr10:83799383-83815458(probes 997921:997932)  	chr10:83794071-83830521(probes 997919:997953)  	1.3051e-09	 1.8736e-08	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 13	10q23.2 	chr10:89347624-89376421(probes 1001511:1001523)	chr10:89347624-89376421(probes 1001511:1001523)	chr10:89308315-90870436(probes 1001480:1002746)	1.381e-12	   0.018982	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 14	10q23.31	chr10:89569695-89618902(probes 1001667:1001702)	chr10:89592240-89605116(probes 1001679:1001686)	chr10:89308315-90870436(probes 1001480:1002746)	1.3445e-17	 1.3445e-17	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	2	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 15	12q21.33	chr12:90159490-90173148(probes 1164350:1164361)	chr12:90162851-90172914(probes 1164351:1164360)	chr12:90159490-90172914(probes 1164350:1164360)	0.030263	   0.030263	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 16	13q14.2 	chr13:47847208-50220424(probes 1211735:1213065)	chr13:47912336-47966419(probes 1211798:1211841)	chr13:47912336-47966419(probes 1211798:1211841)	0.055532	   0.055532	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 17	13q21.32	chr13:67006295-67020238(probes 1222263:1222273)	chr13:67016103-67020238(probes 1222272:1222273)	chr13:67006295-67020238(probes 1222263:1222273)	0.0015975	  0.0015975	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 18	17q11.2 	chr17:26425648-26673293(probes 1403598:1403699)	chr17:26533127-26579279(probes 1403642:1403661)	chr17:26533127-26579279(probes 1403642:1403661)	0.15486	    0.15486	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 19	17q22   	chr17:53041012-53059654(probes 1417955:1417966)	chr17:53041012-53057255(probes 1417955:1417965)	chr17:53041012-53059654(probes 1417955:1417966)	0.0088564	  0.0088564	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 1 - log2 ratios	1p36.12 	chr1:20907696-20932942(probes 9453:9470)            	chr1:20907696-20924301(probes 9453:9468)            	chr1:20907696-20924301(probes 9453:9468)            	0.15893	     0.15893	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2232	0	0.92777	0.943	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 2 - log2 ratios	1q22    	chr1:154500104-154771299(probes 72937:73054)      	chr1:154726324-154747454(probes 73029:73039)      	chr1:154726324-154747454(probes 73029:73039)      	0.07964	     0.07964	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5025	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3381	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9888	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 3 - log2 ratios	1q32.1  	chr1:202299662-203007854(probes 103166:103742)    	chr1:202413810-202818452(probes 103263:103593)    	chr1:201327874-203776864(probes 102600:104231)    	3.7759e-14	  3.7759e-14	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0.7758	0	0	0	0	0	0	0	0	0	0	0	0	1.5002	0	0	0	1.5213	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5126	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4721	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4322	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4417	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4629	0	0	0	0	0	1.4848	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0267	0	1.4949	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 4 - log2 ratios	1q44    	chr1:241044757-242809557(probes 129619:130628)    	chr1:241500278-242803774(probes 129722:130625)    	chr1:241500278-242803774(probes 129722:130625)    	0.22556	     0.22556	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	1.5101	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4975	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 5 - log2 ratios	3q26.33 	chr3:182207550-183214620(probes 377574:378120)    	chr3:182354608-182774112(probes 377643:377870)    	chr3:182207550-183214620(probes 377574:378120)    	0.054966	    0.054966	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4942	0	0	0	1.0675	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.498	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 6 - log2 ratios	4q12    	chr4:54506016-54554815(probes 417572:417592)        	chr4:54516108-54540980(probes 417573:417583)        	chr4:48783398-58279689(probes 416263:420171)        	2.5816e-37	  2.5815e-37	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0.8506	0	0	1.4743	0	1.4931	0	0	0.66277	0	0	1.5192	0	1.4489	0	0	0	0	1.4205	0	0	1.2811	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1761	0	0	0	0	0	0	0	0	0	1.4679	0	0	0	0	1.5306	0.7278	1.4114	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4458	0	1.4714	0	0	0	0.8677	0	0	0	0	0	0	0	0	0	0	0	1.4922	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4525	1.5061	1.4638	0	0	0	0	0	0	0	0	0	0	0.6519	0	0	0	0	0	0	0	1.5213	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.498	0	0	1.4765	0	
peel_off.Broad_focal_080606	Amplification Peak 7 - log2 ratios	7p11.2  	chr7:54921812-54988715(probes 738402:738445)        	chr7:54931889-54988715(probes 738412:738445)        	chr7:52580040-62270579(probes 736781:739808)        	1.0737e-186	 1.0737e-186	focal	Actual Log2 Ratio Given	1.4927	0	1.4918	1.4761	0	1.4746	1.5101	1.4644	1.5594	0	1.4889	1.4931	0	1.4604	0	0	0	1.5192	0	0	0	0	0	1.5002	1.4205	0	0	1.5213	1.4911	0	0	1.4738	1.5937	0	0	1.4693	1.5029	1.5108	1.525	1.5108	1.5049	0	0	0	1.4339	1.5005	1.5025	0	1.4851	0	0	0	0	1.4903	1.4765	1.4721	0	1.176	0	0	1.4739	0	1.4691	0	0	0	0	1.5109	1.4778	1.4851	1.5469	1.1917	1.5245	0	1.487	1.4622	0	0	0	1.4583	0	1.4057	1.4736	0	0	0	1.4941	0	0	0	0	0	1.4785	1.4946	1.4829	0	0	0	0	0	0	0	1.5514	0	0	0	0	0	0	1.4756	1.5272	1.5057	1.5073	0	0	1.5149	0	0	1.4958	0	0	0	0	1.4629	1.4375	0	0	1.502	1.5403	1.4848	0	1.4975	1.4623	0	0	0	1.5524	0	0	1.5478	0	0	1.4552	0	1.0302	0	1.5243	0	0	1.4795	0	0	0	0	0	0	0	1.0541	0	0	0	1.4888	1.4817	0	1.4964	0	1.5005	0	0	
peel_off.Broad_focal_080606	Amplification Peak 8 - log2 ratios	7q21.2  	chr7:91681231-92433690(probes 753596:754177)        	chr7:91906552-92367835(probes 753703:754139)        	chr7:91581087-92838367(probes 753561:754370)        	0.00041973	  0.00041973	focal	Actual Log2 Ratio Given	0.8847	0	0	0	0	0	0	0	0	1.4743	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.88834	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8356	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6529	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.498	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 9 - log2 ratios	7q31.2  	chr7:116101460-116366278(probes 766578:766844)    	chr7:116101460-116296083(probes 766578:766812)    	chr7:116066994-117302075(probes 766555:767366)    	6.0276e-08	  6.0276e-08	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4813	0	0	0	1.5212	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9895	0	0	0	1.4714	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4638	0	0	0	0	0	0	0	0	0	0	1.4797	0	0	0	1.6002	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 10 - log2 ratios	7q34    	chr7:141671522-142213197(probes 782189:782385)    	chr7:141882384-142213197(probes 782300:782385)    	chr7:141767721-142213197(probes 782212:782385)    	0.012073	     0.15893	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6797	0	0	0	0	0	0	0	0	0	0	0.8222	0	0	0	0.7761	0	0	0	0	0	0	0.36538	0	0	0	0.4627	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 11 - log2 ratios	9q33.2  	chr9:123909128-123922105(probes 940386:940397)    	chr9:123909128-123918518(probes 940386:940392)    	chr9:123909128-123922105(probes 940386:940397)    	0.094516	    0.094516	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6886	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0223	0	1.0713	0.9637	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 12 - log2 ratios	10p14   	chr10:11469998-11489797(probes 956681:956697)      	chr10:11476552-11489797(probes 956686:956697)      	chr10:11476552-11489797(probes 956686:956697)      	0.14768	     0.14768	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0406	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.60566	0	0	0	0.77343	0	1.1354	0.7582	-1.0527	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.513	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.3824	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 13 - log2 ratios	11p15.5 	chr11:2746514-2782638(probes 1032377:1032389)        	chr11:2746514-2782638(probes 1032377:1032389)        	chr11:2746514-2782638(probes 1032377:1032389)        	0.011515	    0.011515	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.85739	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3823	1.2589	1.5351	0.4433	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 14 - log2 ratios	11p13   	chr11:32387436-33587367(probes 1052180:1052882)    	chr11:32456077-32468027(probes 1052275:1052281)    	chr11:32456077-32468027(probes 1052275:1052281)    	0.21641	     0.21641	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4813	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5279	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 15 - log2 ratios	11q23.3 	chr11:117777604-122947921(probes 1100002:1103653)	chr11:119162161-119178931(probes 1100831:1100841)	chr11:119162161-119178931(probes 1100831:1100841)	0.1712	      0.1712	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5256	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5351	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 16 - log2 ratios	12p13.32	chr12:4036724-4303899(probes 1114165:1114419)        	chr12:4266498-4278396(probes 1114363:1114395)        	chr12:4036724-4303899(probes 1114165:1114419)        	0.012073	    0.012073	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	1.3916	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5002	0	0.48931	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2062	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 17 - log2 ratios	12q14.1 	chr12:56370612-56480203(probes 1143884:1143894)    	chr12:56370612-56459195(probes 1143884:1143887)    	chr12:55909438-58278467(probes 1143691:1145122)    	7.6752e-45	  7.6751e-45	focal	Actual Log2 Ratio Given	0	0	0	0	0	1.4746	1.4494	0	0	1.4743	0	1.4931	0	0	0	0	0	0	0	0	0	0	0	1.5002	0	1.4439	0	0	1.4911	0	1.4452	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3982	0	0	0	0	0	0	0	0	0	0	0	0.89437	0	0	0	0	1.5047	0	0	0	1.4942	0	0	0	0	0	0	0	0	0	0	0	1.4721	0	1.4583	1.4722	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4858	0	0	0	0	0	0	0	0	1.4922	0.74238	0	0	1.2968	0	0	1.5272	0	0	0	0	0	0	0	0	0	0	1.5061	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5524	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4973	0	1.4191	0	0	0	0	0	0	1.498	0	1.5005	0	0	
peel_off.Broad_focal_080606	Amplification Peak 18 - log2 ratios	12q15   	chr12:67458319-67587710(probes 1150803:1150912)    	chr12:67469546-67570534(probes 1150808:1150902)    	chr12:67030179-69844632(probes 1150542:1152400)    	2.1315e-32	  6.4528e-12	focal	Actual Log2 Ratio Given	0	0	0	0	0	1.4746	1.5101	1.4644	1.5594	0	0	1.4931	0	0	0	0	0	0	0	0	0	0	0	0	1.4011	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4995	1.4813	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.471	0	0	1.4722	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4957	0	0	0	0	0	1.5514	0	0	0	0	1.4493	0	0	1.5272	0	0	0	0	0	0	0	0	0	0	1.5061	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5524	0	0	0	0	0	0	0	0	0	0	0	1.4343	0	0	0	0	0	0	0	0	1.3618	0	0	0	0	0	0	0	1.4726	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 19 - log2 ratios	13q14.2 	chr13:47786516-47797292(probes 1211647:1211658)    	chr13:47796161-47797252(probes 1211648:1211657)    	chr13:47796161-47797252(probes 1211648:1211657)    	0.1208	      0.1208	focal	Actual Log2 Ratio Given	0	0	0	1.469	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1699	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.5128	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.91557	0	0	0	0	0	0	0	0	-0.85469	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Amplification Peak 20 - log2 ratios	19p13.3 	chr19:1308844-2581324(probes 1478985:1479316)        	chr19:1374673-1427814(probes 1479009:1479022)        	chr19:1308844-2581324(probes 1478985:1479316)        	0.010929	    0.010929	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1587	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.58763	0	0	0	0	0.55242	0	0	0	0.7139	0.97677	0.6804	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 1 - log2 ratios	1p36.23 	chr1:8051998-9316594(probes 2860:3516)            	chr1:8109888-8140063(probes 2893:2908)            	chr1:8109888-8140063(probes 2893:2908)            	0.059017	   0.059017	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4971	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0814	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4856	
peel_off.Broad_focal_080606	Deletion Peak 2 - log2 ratios	1p33    	chr1:51018466-51238240(probes 25375:25465)      	chr1:51051237-51226466(probes 25395:25462)      	chr1:50852566-51261437(probes 25322:25477)      	2.5222e-06	 2.5222e-06	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	-1.5212	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5078	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4812	0	-1.5362	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.6811	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5183	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 3 - log2 ratios	3q13.31 	chr3:117363420-117500384(probes 340110:340201)	chr3:117379569-117389782(probes 340121:340132)	chr3:117379569-117389782(probes 340121:340132)	0.1934	     0.1934	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9874	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.47285	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9966	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4574	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 4 - log2 ratios	4q28.2  	chr4:130376070-130388030(probes 460606:460617)	chr4:130376070-130388030(probes 460606:460617)	chr4:130376070-130388030(probes 460606:460617)	0.15231	    0.15231	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.74969	0	-0.87664	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.2442	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.75693	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 5 - log2 ratios	8p23.2  	chr8:3571109-3575595(probes 793812:793827)        	chr8:3571679-3575595(probes 793816:793827)        	chr8:3570501-3576688(probes 793808:793831)        	3.3338e-06	 3.3338e-06	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.96614	0	-0.5596	0	0	0	0	-0.70291	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.8327	0	0	0	0	0	0	0	0	0	0	0	-1.5307	-1.0151	0	0	-0.8529	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.60199	0	0	-1.052	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	

peel_off.Broad_focal_080606	Deletion Peak 6 - log2 ratios	9p21.3  	chr9:21981924-21989614(probes 892268:892271)    	chr9:21981924-21989239(probes 892268:892270)    	chr9:19473043-29283084(probes 890449:897053)    	1.165e-234	 1.165e-234	focal	Actual Log2 Ratio Given	-1.5073	-1.5468	-1.5082	-1.5239	-1.0006	0	0	-1.5356	0	0	-1.5039	0	-1.5212	0	-1.0573	0	0	-1.4808	0	-1.5511	0	0	0	0	-1.5795	0	0	-1.3041	-1.5089	0	0	-1.5262	-1.091	0	0	-1.3334	-1.4971	-1.4892	-1.475	-1.1776	-1.4951	-1.4835	0	0	-1.2933	0	-0.86661	0	-1.5149	0	-1.1882	-1.51	0	-1.5097	0	-1.5279	0	0	0	-1.5005	0	0	-1.5309	0	-1.3367	0	-1.3625	-1.4324	0	0	0	0	0	-1.5155	-1.513	-1.5378	-1.1126	0	-1.1892	0	0	0	-1.5264	0	0	-1.5542	-1.257	-1.5286	-1.5028	0	0	-1.4721	-1.5215	-1.5048	0	-1.518	0	0	0	-0.5037	0	0	-1.4486	0	0	0	0	0	-0.7829	0	0	-1.2587	-1.4927	-1.1524	-1.1756	-1.4851	0	0	-1.2034	-1.5253	-1.535	0	-1.5362	-1.5371	-1.5625	0	-0.96423	-1.498	0	-1.5152	0	-1.5025	-1.5377	-1.5203	-1.0132	0	0	-1.3998	-1.5861	-1.4522	0	0	-1.5448	0	-0.97	0	-1.4757	-0.8531	0	-1.5205	0	0	-0.9575	-1.5781	0	0	0	0	-1.4574	-1.4727	-1.4771	-1.5112	-1.5183	-1.1581	0	0	0	-1.5235	-1.4856	
peel_off.Broad_focal_080606	Deletion Peak 7 - log2 ratios	9p21.3  	chr9:23349613-24744813(probes 893064:893790)    	chr9:23659527-24149114(probes 893298:893624)    	chr9:19473043-29283084(probes 890449:897053)    	6.6534e-72	     0.2453	none	Actual Log2 Ratio Given	0	0	0	-1.5239	-1.0385	0	0	0	0	0	0	0	-1.5212	0	0	-0.89902	0	-1.4808	0	0	0	0	0	0	-1.5795	0	0	0	0	0	0	0	0	0	0	0	-1.4971	-1.4892	-1.475	-1.1776	0	0	0	0	0	0	0	0	0	-1.4561	0	0	0	0	0	0	0	0	0	0	0	0	-1.5309	0	0	0	-1.4222	-1.4891	0	0	0	0	0	0	0	-1.5378	0	0	-0.6848	0	0	0	-1.5264	0	0	-1.5542	0	0	0	0	0	-1.4721	0	-1.5048	0	0	0	0	0	0	0	0	-1.4486	0	0	0	0	0	-0.8173	0	0	-1.3714	0	0	0	0	0	0	0	0	0	0	0	0	-1.5625	0	-0.88683	0	0	0	0	0	0	0	0	0	0	0	-1.5861	-1.4522	-0.8751	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4727	0	-1.5112	0	0	0	0	0	-1.5235	0	
peel_off.Broad_focal_080606	Deletion Peak 8 - log2 ratios	10p13   	chr10:12619611-12624214(probes 957366:957377)  	chr10:12621793-12624214(probes 957372:957377)  	chr10:12619466-12639699(probes 957365:957393)  	3.5991e-07	 3.5991e-07	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	-1.4548	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.118	0	0	-1.4953	0	0	0	0	0	0	0	0	0	0	0	0	-1.2869	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.3668	0	0	0	0	-1.5507	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.66829	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 9 - log2 ratios	10p11.23	chr10:30130233-30143776(probes 969617:969629)  	chr10:30130233-30142968(probes 969617:969627)  	chr10:30130233-30142968(probes 969617:969627)  	0.00069677	   0.020841	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.475	-1.4892	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4919	0	0	0	0	0	0	0	0	0	0	0	0	-1.5636	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 10 - log2 ratios	10q11.21	chr10:44697479-44739338(probes 976180:976198)  	chr10:44697846-44739338(probes 976181:976198)  	chr10:44688039-44739338(probes 976171:976198)  	0.0013393	   0.021021	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4043	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0871	-0.86192	0	0	-1.2487	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.1729	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 11 - log2 ratios	10q11.23	chr10:52980195-52984601(probes 979134:979157)  	chr10:52980237-52984601(probes 979135:979157)  	chr10:52980195-52984601(probes 979134:979157)  	0.005018	   0.005018	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4398	-0.8245	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.3954	0	0	0	0	-1.5781	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 12 - log2 ratios	10q23.1 	chr10:83799383-83816617(probes 997921:997936)  	chr10:83799383-83815458(probes 997921:997932)  	chr10:83794071-83830521(probes 997919:997953)  	1.3051e-09	 1.8736e-08	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4787	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.2173	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9565	0	0	0	0	-1.0545	0	-1.4287	0	0	0	-1.0734	0	0	0	0	0	0	-0.9649	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5507	0	0	0	-1.2587	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 13 - log2 ratios	10q23.2 	chr10:89347624-89376421(probes 1001511:1001523)	chr10:89347624-89376421(probes 1001511:1001523)	chr10:89308315-90870436(probes 1001480:1002746)	1.381e-12	   0.018982	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5666	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4516	0	0	0	0	0	0	0	0	0	0	0	-0.90848	0	0	0	0	-1.5378	-1.3577	0	0	0	-1.1744	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.718	-1.4486	0	0	0	0	0	0	0	0	0	-1.4927	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.6737	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 14 - log2 ratios	10q23.31	chr10:89569695-89618902(probes 1001667:1001702)	chr10:89592240-89605116(probes 1001679:1001686)	chr10:89308315-90870436(probes 1001480:1002746)	1.3445e-17	 1.3445e-17	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5795	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.529	0	0	0	0	0	0	0	-1.5005	0	0	0	0	0	0	0	0	0	0	0	-1.5636	0	0	-1.513	-1.5378	-0.9947	0	0	0	-1.1744	0	0	0	0	0	0	0	0	0	0	0	0	-1.5054	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.6737	0	-0.9287	0	0	-1.5051	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 15 - log2 ratios	12q21.33	chr12:90159490-90173148(probes 1164350:1164361)	chr12:90162851-90172914(probes 1164351:1164360)	chr12:90159490-90172914(probes 1164350:1164360)	0.030263	   0.030263	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.81899	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.1512	-1.3174	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.1562	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 16 - log2 ratios	13q14.2 	chr13:47847208-50220424(probes 1211735:1213065)	chr13:47912336-47966419(probes 1211798:1211841)	chr13:47912336-47966419(probes 1211798:1211841)	0.055532	   0.055532	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.85469	0	0	0	0	0	0	0	-1.6737	0	0	0	0	0	0	0	-1.5781	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 17 - log2 ratios	13q21.32	chr13:67006295-67020238(probes 1222263:1222273)	chr13:67016103-67020238(probes 1222272:1222273)	chr13:67006295-67020238(probes 1222263:1222273)	0.0015975	  0.0015975	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.3431	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.50757	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9674	0	0	-0.71212	0	0	0	0	0	0	0	0	0	-1.1008	0	0	0	0	0	0	-1.0501	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 18 - log2 ratios	17q11.2 	chr17:26425648-26673293(probes 1403598:1403699)	chr17:26533127-26579279(probes 1403642:1403661)	chr17:26533127-26579279(probes 1403642:1403661)	0.15486	    0.15486	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4214	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.2727	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9151	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Broad_focal_080606	Deletion Peak 19 - log2 ratios	17q22   	chr17:53041012-53059654(probes 1417955:1417966)	chr17:53041012-53057255(probes 1417955:1417965)	chr17:53041012-53059654(probes 1417955:1417966)	0.0088564	  0.0088564	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.87714	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.1078	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.394	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.4231	0	0	0	0	0	0	0	0	0	0	-0.828	0	0	0	0	0	0	0	0	0	0	-0.6776	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 1	1q32.1  	chr1:202305784-203006137(probes 30016:30193)    	chr1:202410873-202804270(probes 30057:30142)    	chr1:201425596-203776864(probes 29860:30366)    	1.1559e-11	  1.1559e-11	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 2	4q12    	chr4:54433380-54601117(probes 125530:125554)      	chr4:54437171-54526701(probes 125532:125550)      	chr4:48758630-57966442(probes 125196:126218)      	1.3616e-29	  1.3616e-29	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	1	0	0	2	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	
Stanford_focal_080606	Amplification Peak 3	7p22.1  	chr7:4617711-5584762(probes 214050:214153)          	chr7:5243595-5294954(probes 214133:214136)          	chr7:5243595-5294954(probes 214133:214136)          	0.13149	     0.13149	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 4	7p12.1  	chr7:52633687-52764817(probes 224770:224783)      	chr7:52633687-52762105(probes 224770:224782)      	chr7:52511851-62267885(probes 224723:225511)      	1.7515e-15	  3.2003e-08	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	
Stanford_focal_080606	Amplification Peak 5	7p11.2  	chr7:54916732-55049911(probes 225211:225220)      	chr7:54916732-55034965(probes 225211:225219)      	chr7:52511851-62267885(probes 224723:225511)      	4.4032e-219	 4.4032e-219	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	2	0	0	2	0	0	0	0	2	2	0	0	0	0	0	0	0	0	2	0	2	2	0	0	0	0	0	0	0	2	2	0	0	2	0	0	0	0	2	0	0	0	0	2	0	2	2	0	0	0	0	0	2	0	2	0	2	0	0	2	2	2	2	0	0	0	0	0	0	2	0	0	0	2	2	0	1	0	0	2	0	2	2	2	2	2	0	0	0	2	2	2	2	0	0	2	2	0	0	2	0	2	2	0	2	2	0	0	0	0	2	0	2	1	0	0	0	0	2	2	0	2	2	0	0	0	1	0	0	0	0	2	2	0	2	0	1	2	0	1	0	0	0	0	2	2	0	2	0	0	0	2	2	0	2	2	0	0	0	0	0	2	0	0	2	2	2	2	0	0	1	2	0	0	0	0	0	2	0	2	0	0	2	0	0	0	2	2	2	2	2	2	0	
Stanford_focal_080606	Amplification Peak 6	7p11.2  	chr7:55190250-55387156(probes 225270:225328)      	chr7:55190250-55221679(probes 225270:225283)      	chr7:52511851-62267885(probes 224723:225511)      	4.0378e-217	    0.023549	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	2	0	0	2	0	0	0	0	2	2	0	0	0	0	0	0	0	0	2	0	2	2	0	0	0	0	0	0	0	2	2	0	0	2	0	0	0	0	2	0	0	0	0	2	0	2	2	0	0	0	0	0	2	0	2	0	2	0	0	2	2	2	2	0	0	0	0	0	0	2	0	0	0	2	2	0	1	0	0	2	0	2	2	2	2	2	0	0	0	2	2	2	2	0	0	2	2	0	0	2	0	2	2	0	2	2	0	0	0	0	2	0	2	1	0	0	0	0	2	2	0	2	2	0	0	0	1	0	0	0	0	2	2	0	1	0	1	2	0	1	0	0	0	0	2	2	0	2	0	0	0	2	2	0	2	2	0	0	0	0	0	2	0	0	2	2	2	2	0	0	1	2	0	0	0	0	0	2	0	2	0	0	2	0	0	0	2	2	2	2	2	2	0	
Stanford_focal_080606	Amplification Peak 7	7p11.2  	chr7:55621925-55950387(probes 225371:225397)      	chr7:55695971-55842716(probes 225384:225388)      	chr7:52511851-62267885(probes 224723:225511)      	3.6157e-54	    0.015171	none	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	2	0	0	0	0	0	0	0	0	2	2	0	1	0	0	0	0	1	0	0	0	0	2	0	0	2	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	
Stanford_focal_080606	Amplification Peak 8	7p11.2  	chr7:56337311-57219953(probes 225437:225456)      	chr7:56566850-56762161(probes 225445:225455)      	chr7:52511851-62267885(probes 224723:225511)      	4.9345e-08	    0.017375	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	
Stanford_focal_080606	Amplification Peak 9	7p11.1  	chr7:57525308-62267885(probes 225507:225511)      	chr7:57560820-62267885(probes 225509:225511)      	chr7:52511851-62267885(probes 224723:225511)      	1.0958e-09	  3.9864e-05	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 10	7q21.11 	chr7:78446153-78696297(probes 227448:227486)      	chr7:78588070-78610481(probes 227477:227480)      	chr7:78446153-78696297(probes 227448:227486)      	0.0085154	   0.0085154	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 11	7q21.2  	chr7:91663105-92829422(probes 229425:229566)      	chr7:91920704-92368853(probes 229440:229488)      	chr7:91920704-92368853(probes 229440:229488)      	0.036395	    0.036395	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	
Stanford_focal_080606	Amplification Peak 12	7q31.2  	chr7:116100223-116364359(probes 233146:233194)  	chr7:116106239-116297474(probes 233147:233179)  	chr7:116059029-117302075(probes 233142:233336)  	1.1927e-06	  1.1927e-06	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	
Stanford_focal_080606	Amplification Peak 13	7q31.31 	chr7:119392773-119834839(probes 233573:233610)  	chr7:119577339-119629920(probes 233590:233594)  	chr7:119577339-119629920(probes 233590:233594)  	0.044737	     0.20868	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	
Stanford_focal_080606	Amplification Peak 14	7q32.1  	chr7:127448000-131022590(probes 234860:235418)  	chr7:127879231-128371319(probes 234917:234964)  	chr7:127879231-128371319(probes 234917:234964)  	0.2327	      0.2327	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 15	7q34    	chr7:141918096-142086317(probes 237425:237441)  	chr7:141918683-142031221(probes 237426:237434)  	chr7:141915075-142213325(probes 237421:237446)  	0.0020705	   0.0020705	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 16	7q35    	chr7:144451610-145455132(probes 237693:237837)  	chr7:145332650-145372471(probes 237817:237822)  	chr7:145332650-145372471(probes 237817:237822)  	0.095426	    0.095426	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 17	7q36.1  	chr7:151056383-152254544(probes 238986:239190)  	chr7:152051432-152175569(probes 239175:239178)  	chr7:152051432-152175569(probes 239175:239178)  	0.1857	      0.1857	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 18	11q23.3 	chr11:116809407-116821755(probes 339040:339045)	chr11:116809407-116817298(probes 339040:339043)	chr11:116809407-116821755(probes 339040:339045)	0.026868	    0.026868	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 19	12q12   	chr12:33874676-36696953(probes 350820:350823)    	chr12:33874676-36696953(probes 350820:350823)    	chr12:33874676-36743815(probes 350820:350825)    	3.2055e-15	  3.2055e-15	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	0	1	0	1	0	1	1	0	1	1	0	1	0	0	1	1	1	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	1	1	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 20	12q13.11	chr12:44679429-45061037(probes 352229:352296)    	chr12:44900909-44941553(probes 352284:352289)    	chr12:44900909-44941553(probes 352284:352289)    	0.01153	     0.01153	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 21	12q13.3 	chr12:56134907-56232743(probes 353955:353963)    	chr12:56157823-56206528(probes 353960:353960)    	chr12:55869940-58278277(probes 353936:354258)    	3.2616e-19	    0.031177	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	2	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	
Stanford_focal_080606	Amplification Peak 22	12q14.1 	chr12:56373754-56540281(probes 353981:353987)    	chr12:56451353-56463558(probes 353982:353982)    	chr12:55869940-58278277(probes 353936:354258)    	6.2937e-31	  4.4579e-29	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	1	2	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 23	12q14.1 	chr12:57568970-57719039(probes 354142:354166)    	chr12:57568970-57599417(probes 354142:354147)    	chr12:55869940-58278277(probes 353936:354258)    	5.6059e-08	    0.015966	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 24	12q14.1 	chr12:58467232-58619522(probes 354289:354311)    	chr12:58520214-58607749(probes 354302:354310)    	chr12:58467232-58619522(probes 354289:354311)    	0.0094368	     0.23242	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 25	12q14.1 	chr12:59539753-59650781(probes 354404:354416)    	chr12:59569068-59602057(probes 354408:354409)    	chr12:59233663-59741053(probes 354376:354426)    	1.8677e-07	  4.2095e-06	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 26	12q14.1 	chr12:59935618-60263258(probes 354452:354518)    	chr12:60013947-60047768(probes 354464:354473)    	chr12:59835349-60263258(probes 354436:354518)    	0.00010727	    0.055348	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 27	12q14.1 	chr12:60834721-60886899(probes 354639:354657)    	chr12:60854639-60879107(probes 354649:354656)    	chr12:60401433-61165236(probes 354536:354699)    	0.0003592	    0.010059	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 28	12q14.2 	chr12:61384863-61487531(probes 354764:354782)    	chr12:61389354-61461615(probes 354765:354772)    	chr12:61314417-61884650(probes 354729:354886)    	0.0038685	    0.057422	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 29	12q14.2 	chr12:62806074-62986026(probes 354988:355009)    	chr12:62831970-62893748(probes 354994:354999)    	chr12:62135183-63609373(probes 354921:355109)    	3.0059e-08	  7.7694e-07	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	1	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 30	12q14.3 	chr12:64478935-64628383(probes 355243:355257)    	chr12:64478935-64529768(probes 355243:355249)    	chr12:64478935-64628383(probes 355243:355257)    	0.0043588	     0.03572	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 31	12q14.3 	chr12:65433871-65665628(probes 355441:355510)    	chr12:65512630-65543629(probes 355467:355472)    	chr12:64868153-66312236(probes 355301:355670)    	6.6893e-05	       0.149	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 32	12q14.3 	chr12:65822927-66072693(probes 355552:355595)    	chr12:65872312-65946871(probes 355562:355566)    	chr12:64868153-66312236(probes 355301:355670)    	1.0265e-07	  2.2988e-06	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 33	12q15   	chr12:66664694-66765804(probes 355761:355789)    	chr12:66672134-66717473(probes 355763:355774)    	chr12:66359082-66879473(probes 355683:355820)    	2.9345e-05	     0.21453	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 34	12q15   	chr12:66795362-66850943(probes 355802:355809)    	chr12:66820788-66834489(probes 355805:355805)    	chr12:66359082-66879473(probes 355683:355820)    	3.741e-07	  0.00011221	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 35	12q15   	chr12:67030805-67085810(probes 355877:355905)    	chr12:67053395-67065866(probes 355888:355892)    	chr12:67025934-69853222(probes 355875:356602)    	5.7781e-06	     0.20704	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 36	12q15   	chr12:67142000-67235783(probes 355932:355955)    	chr12:67180246-67235783(probes 355944:355955)    	chr12:67025934-69853222(probes 355875:356602)    	1.0567e-08	  0.00017726	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 37	12q15   	chr12:67467111-67552673(probes 355982:355990)    	chr12:67467111-67543708(probes 355982:355988)    	chr12:67025934-69853222(probes 355875:356602)    	1.8414e-37	  1.8414e-37	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	2	2	0	0	2	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	
Stanford_focal_080606	Amplification Peak 38	12q15   	chr12:67933546-68085914(probes 356094:356119)    	chr12:67957426-68029658(probes 356098:356105)    	chr12:67025934-69853222(probes 355875:356602)    	4.3176e-15	   0.0076441	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 39	12q15   	chr12:68259660-68384131(probes 356159:356205)    	chr12:68275143-68333764(probes 356161:356179)    	chr12:67025934-69853222(probes 355875:356602)    	6.9448e-11	     0.20549	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 40	12q15   	chr12:68931660-68999921(probes 356357:356364)    	chr12:68931660-68965856(probes 356357:356358)    	chr12:67025934-69853222(probes 355875:356602)    	7.6272e-09	  0.00075842	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 41	12q15   	chr12:69289161-69537396(probes 356459:356535)    	chr12:69326404-69340571(probes 356480:356481)    	chr12:67025934-69853222(probes 355875:356602)    	2.4503e-06	   0.0038811	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 42	12q15   	chr12:69696450-69853222(probes 356579:356602)    	chr12:69729187-69809400(probes 356587:356594)    	chr12:67025934-69853222(probes 355875:356602)    	0.00067908	    0.011836	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 43	19p13.3 	chr19:1-1121444(probes 461332:461470)                	chr19:1-715388(probes 461332:461435)                 	chr19:1-715388(probes 461332:461435)                 	0.10654	     0.10654	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 44	19q12   	chr19:24159894-32836339(probes 464756:464765)    	chr19:32640703-32770984(probes 464758:464763)    	chr19:24159894-33022747(probes 464756:464774)    	2.6724e-21	  2.6724e-21	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	0	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	
Stanford_focal_080606	Deletion Peak 1	1p36.23 	chr1:7592601-8018086(probes 1111:1166)            	chr1:7922190-8018086(probes 1156:1166)            	chr1:7922190-7947178(probes 1156:1157)            	0.011758	     0.24519	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Deletion Peak 2	1p36.23 	chr1:8236482-9319246(probes 1212:1385)            	chr1:8346098-9319246(probes 1228:1385)            	chr1:8236482-9319246(probes 1212:1385)            	0.00039789	  0.00039789	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	
Stanford_focal_080606	Deletion Peak 3	1p33    	chr1:50906925-51257213(probes 7858:7880)        	chr1:50931936-51235026(probes 7859:7875)        	chr1:50841691-51307967(probes 7849:7885)        	9.5718e-06	  9.5718e-06	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Deletion Peak 4	3q28    	chr3:192548087-192555921(probes 115486:115490)	chr3:192548087-192550981(probes 115486:115488)	chr3:192547223-192555921(probes 115485:115490)	1.8122e-09	  1.8122e-09	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Deletion Peak 5	6q25.2  	chr6:154845377-154854135(probes 209687:209690)	chr6:154845377-154854135(probes 209687:209690)	chr6:154845377-154854135(probes 209687:209690)	0.21777	     0.21777	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Deletion Peak 6	9p23    	chr9:10008122-12190956(probes 270683:271037)    	chr9:10639386-10676547(probes 270817:270827)    	chr9:10639386-10676547(probes 270817:270827)    	0.15853	     0.15853	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Deletion Peak 7	9p22.1  	chr9:19712761-19995311(probes 273356:273423)    	chr9:19736627-19746768(probes 273361:273365)    	chr9:19451194-30494424(probes 273268:275789)    	2.5357e-19	    0.001105	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	
Stanford_focal_080606	Deletion Peak 8	9p21.3  	chr9:20661513-20943749(probes 273588:273662)    	chr9:20707021-20887265(probes 273602:273652)    	chr9:19451194-30494424(probes 273268:275789)    	8.2275e-46	    0.011787	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	2	0	0	0	2	0	0	0	0	0	2	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	2	0	0	0	0	1	0	0	2	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	
Stanford_focal_080606	Deletion Peak 9	9p21.3  	chr9:21964219-21996272(probes 273875:273882)    	chr9:21970152-21987871(probes 273876:273877)    	chr9:19451194-30494424(probes 273268:275789)    	3.1018e-289	 3.1018e-289	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	0	0	0	2	0	0	2	2	2	1	2	0	0	2	0	0	1	2	2	0	2	0	1	0	0	0	1	0	0	1	2	0	0	1	0	0	0	0	0	0	1	1	0	1	0	0	2	0	1	0	0	1	2	0	2	0	1	0	2	1	2	2	2	0	2	1	1	0	0	2	0	0	0	2	2	0	2	2	1	1	0	2	1	2	2	1	0	0	0	0	1	2	0	0	0	1	2	0	0	2	0	0	1	1	0	2	0	1	1	0	1	1	0	0	2	0	0	0	1	0	0	2	2	2	0	0	1	0	0	1	0	1	0	1	1	0	1	1	0	0	0	2	1	2	0	0	2	2	2	0	1	0	2	2	2	2	0	1	1	2	2	0	0	0	0	2	1	2	2	2	1	2	0	0	2	1	1	2	1	2	0	2	2	2	1	0	2	2	2	2	0	0	1	
Stanford_focal_080606	Deletion Peak 10	9p21.3  	chr9:22462290-22552120(probes 273973:273988)    	chr9:22522876-22531136(probes 273983:273983)    	chr9:19451194-30494424(probes 273268:275789)    	1.3041e-120	  1.1227e-05	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	0	0	0	2	0	0	2	0	0	2	2	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	1	0	0	1	1	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	2	0	2	0	0	0	0	0	0	2	2	0	0	1	0	0	0	2	0	0	0	2	2	0	0	2	1	1	0	2	1	2	2	1	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	1	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	1	0	0	1	2	2	0	0	0	0	2	1	0	2	0	0	2	0	0	0	1	1	2	0	0	0	2	0	0	0	0	2	0	2	2	0	0	1	
Stanford_focal_080606	Deletion Peak 11	9p21.3  	chr9:23628687-23749367(probes 274196:274253)    	chr9:23660124-23731247(probes 274217:274249)    	chr9:19451194-30494424(probes 273268:275789)    	1.0881e-73	  4.9879e-08	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	0	0	0	2	0	0	2	0	0	2	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	1	0	0	1	0	0	1	1	0	0	0	0	0	0	1	0	0	1	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	1	2	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	1	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	1	0	0	0	0	2	0	0	0	0	2	0	2	2	0	0	1	
Stanford_focal_080606	Deletion Peak 12	9p21.2  	chr9:25690572-25862204(probes 274552:274601)    	chr9:25693272-25727566(probes 274553:274564)    	chr9:19451194-30494424(probes 273268:275789)    	1.0021e-38	   0.0038509	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	2	0	2	2	0	0	0	
Stanford_focal_080606	Deletion Peak 13	9p21.2  	chr9:26307243-26407713(probes 274723:274741)    	chr9:26307308-26366869(probes 274724:274733)    	chr9:19451194-30494424(probes 273268:275789)    	7.9087e-38	  2.7733e-13	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	0	1	0	0	1	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	2	0	2	2	0	0	0	
Stanford_focal_080606	Deletion Peak 14	9p21.2  	chr9:26633036-26757509(probes 274807:274842)    	chr9:26649563-26663734(probes 274813:274814)    	chr9:19451194-30494424(probes 273268:275789)    	5.1706e-26	     0.24519	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	2	2	0	0	0	
Stanford_focal_080606	Deletion Peak 15	9p21.1  	chr9:29736546-29999443(probes 275704:275738)    	chr9:29806466-29889073(probes 275723:275734)    	chr9:19451194-30494424(probes 273268:275789)    	1.5208e-05	  0.00072832	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	
Stanford_focal_080606	Deletion Peak 16	10q23.2 	chr10:89545695-89635452(probes 309086:309100)  	chr10:89589557-89596168(probes 309097:309097)  	chr10:89314644-90317632(probes 309027:309259)  	3.5375e-19	  3.5375e-19	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	2	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	1	0	
Stanford_focal_080606	Deletion Peak 17	10q23.31	chr10:89883595-90151724(probes 309169:309237)  	chr10:89972719-89987474(probes 309198:309203)  	chr10:89314644-90317632(probes 309027:309259)  	5.3307e-11	  0.00073524	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	2	0	
Stanford_focal_080606	Deletion Peak 18	10q23.31	chr10:90651679-90687674(probes 309337:309349)  	chr10:90680446-90685963(probes 309345:309348)  	chr10:90436216-90875115(probes 309281:309405)  	0.00011014	    0.048083	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	
Stanford_focal_080606	Deletion Peak 19	12q14.1 	chr12:58452259-59101538(probes 354286:354354)  	chr12:58530907-58593473(probes 354304:354309)  	chr12:58530907-58593473(probes 354304:354309)  	0.13725	     0.13725	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Deletion Peak 20	13q21.1 	chr13:57001073-57432002(probes 376784:376819)  	chr13:57124944-57196411(probes 376786:376799)  	chr13:57124944-57196411(probes 376786:376799)  	0.021365	    0.021365	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 1 - log2 ratios	1q32.1  	chr1:202305784-203006137(probes 30016:30193)    	chr1:202410873-202804270(probes 30057:30142)    	chr1:201425596-203776864(probes 29860:30366)    	1.1559e-11	  1.1559e-11	focal	Actual Log2 Ratio Given	0	0	0	0.95802	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7029	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3695	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3167	0	0	0	0	0.6985	0	0.3915	0	1.2443	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7469	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2009	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.312	0	0	0	0	0	0	0	0	0	0	0	0.9675	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 2 - log2 ratios	4q12    	chr4:54433380-54601117(probes 125530:125554)      	chr4:54437171-54526701(probes 125532:125550)      	chr4:48758630-57966442(probes 125196:126218)      	1.3616e-29	  1.3616e-29	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0.9713	0	0	0	1.0982	0	0	0	0	0	0	0.483	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2758	0	0.5923	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3325	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9721	0	0	0	0	1.2356	1.1809	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6813	0	0	0	0	0	0	0	0.6348	0	0	0	0	0.3225	0	0	0	0	1.2124	0	0	1.1219	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3361	0.6294	0	0.8166	0	0.5924	0	0	1.1637	0	0	0.4255	0	1.1948	0	0	0	0	0	0	0	0	0	0	0	0	0.9928	0	0	0	0	0	0	0	0	0	0	0.4631	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3269	0	0	0	0	0.2309	0	0	
Stanford_focal_080606	Amplification Peak 3 - log2 ratios	7p22.1  	chr7:4617711-5584762(probes 214050:214153)          	chr7:5243595-5294954(probes 214133:214136)          	chr7:5243595-5294954(probes 214133:214136)          	0.13149	     0.13149	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2667	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.4015	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.90458	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 4 - log2 ratios	7p12.1  	chr7:52633687-52764817(probes 224770:224783)      	chr7:52633687-52762105(probes 224770:224782)      	chr7:52511851-62267885(probes 224723:225511)      	1.7515e-15	  3.2003e-08	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.4917	0	0	1.4508	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8087	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6395	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4832	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0811	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3982	0	0.8723	0	-0.8338	0	0	0	0	1.3699	0	0	0	0	0	0	0	0	0	0	0	1.2153	1.4658	0	0	
Stanford_focal_080606	Amplification Peak 5 - log2 ratios	7p11.2  	chr7:54916732-55049911(probes 225211:225220)      	chr7:54916732-55034965(probes 225211:225219)      	chr7:52511851-62267885(probes 224723:225511)      	4.4032e-219	 4.4032e-219	focal	Actual Log2 Ratio Given	0	1.3157	0	0	1.4654	0	0	0	0	1.2716	1.4515	0	0	0	0	0	0	0	0	1.4296	0	1.4255	1.4006	0	0	0	0	0	0	0	1.406	1.4844	0	0	1.4879	0	0	0	0	1.3494	0	0	0	0	1.4449	0	1.4994	1.0554	0	0	0	0	0	1.3393	0	1.2714	0	1.1671	0	0	1.1099	1.2355	1.0841	1.1437	0	0	0	0	0	0	1.2084	0	0	0	1.1462	1.2591	0	0.6395	0	0	1.2392	0	1.3841	0.9271	1.3897	1.4992	1.1438	0	0	0	1.1227	1.4832	1.4859	1.186	0	0	1.4984	1.4428	0	0	1.4177	0	1.292	1.3406	0	1.3178	1.1329	0	0	0	0	1.2115	0	1.0987	0.51909	0	0	0	0	1.001	1.2264	0	1.0889	1.2292	0	0	0	0.542	0	0	0	0	1.0176	1.2823	0	1.1495	0	0.8701	0.97856	0	0.8542	0	0	0	0	1.1232	1.2999	0	1.2659	0	0	0	1.242	1.1563	0	1.48	1.4466	0	0	0	0	0	1.2386	0	0	1.414	1.4909	1.4501	1.3716	0	0	0.7601	1.5236	-0.8338	0	0	0	0	1.1221	0	1.2771	0	0	0.9811	0	0	0	1.5174	1.2927	1.6053	1.2153	0.9172	1.2051	0	
Stanford_focal_080606	Amplification Peak 6 - log2 ratios	7p11.2  	chr7:55190250-55387156(probes 225270:225328)      	chr7:55190250-55221679(probes 225270:225283)      	chr7:52511851-62267885(probes 224723:225511)      	4.0378e-217	    0.023549	focal	Actual Log2 Ratio Given	0	1.3157	0	0	1.4654	0	0	0	0	1.2716	1.4515	0	0	0	0	0	0	0	0	1.4296	0	1.4255	1.4006	0	0	0	0	0	0	0	1.478	1.4844	0	0	1.4879	0	0	0	0	1.3494	0	0	0	0	1.4449	0	1.4994	1.0554	0	0	0	0	0	1.3393	0	1.2714	0	1.1671	0	0	1.1099	1.2355	1.0841	1.1437	0	0	0	0	0	0	1.2084	0	0	0	1.1462	1.2591	0	0.6395	0	0	1.2392	0	1.3841	0.9271	1.3897	1.4992	1.1438	0	0	0	1.1227	1.4832	1.302	1.0209	0	0	1.4984	1.4428	0	0	1.4177	0	1.292	1.3406	0	1.3178	1.1329	0	0	0	0	1.2115	0	1.0987	0.51909	0	0	0	0	1.001	1.2264	0	1.0889	1.2292	0	0	0	0.542	0	0	0	0	1.0176	1.2823	0	0.855	0	0.8701	0.97856	0	0.8542	0	0	0	0	1.1232	1.2999	0	1.2659	0	0	0	1.242	0.9574	0	1.4316	1.4466	0	0	0	0	0	1.2386	0	0	1.414	1.4909	1.4501	1.3716	0	0	0.7776	1.5236	-0.8338	0	0	0	0	1.1221	0	1.2771	0	0	0.9811	0	0	0	1.5174	1.2927	1.6053	1.2153	0.9172	1.2051	0	
Stanford_focal_080606	Amplification Peak 7 - log2 ratios	7p11.2  	chr7:55621925-55950387(probes 225371:225397)      	chr7:55695971-55842716(probes 225384:225388)      	chr7:52511851-62267885(probes 224723:225511)      	3.6157e-54	    0.015171	none	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	1.4515	0	0	0	0	0	0	0	0	0	0	1.4658	1.4006	0	0	0	0	0	0	0	0	0.5188	0	0	0	0	0	0	0	0.3931	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3393	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6395	0	0	1.2392	0	1.3841	0	0	0	1.1438	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3695	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.515	1.0889	1.2292	0	0	0	0	0	0	0	0	1.0176	1.2823	0	0.855	0	0	0	0	0.8542	0	0	0	0	1.1232	0	0	1.2659	0	0	0	0.5797	0	0	0	1.4466	0	0	0	0	0	0	0	0	0	1.4909	0	0	0	0	0	0	-0.6017	0	0	0	0	0	0	1.2771	0	0	0	0	0	0	0	0	0	0.971	0	0	0	
Stanford_focal_080606	Amplification Peak 8 - log2 ratios	7p11.2  	chr7:56337311-57219953(probes 225437:225456)      	chr7:56566850-56762161(probes 225445:225455)      	chr7:52511851-62267885(probes 224723:225511)      	4.9345e-08	    0.017375	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3393	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0652	0	0.4902	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1442	0	0	0	0	0.595	0	0	0	0	1.0893	0	0	0.8074	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.971	0	0	0	
Stanford_focal_080606	Amplification Peak 9 - log2 ratios	7p11.1  	chr7:57525308-62267885(probes 225507:225511)      	chr7:57560820-62267885(probes 225509:225511)      	chr7:52511851-62267885(probes 224723:225511)      	1.0958e-09	  3.9864e-05	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3393	0	0	0.7881	0	0.8761	0	0	0.5522	0	0.7349	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.5111	0	0	0.4902	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8062	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.595	0	0	0	0	0	0.5371	0	0.8074	0	0	0.5615	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 10 - log2 ratios	7q21.11 	chr7:78446153-78696297(probes 227448:227486)      	chr7:78588070-78610481(probes 227477:227480)      	chr7:78446153-78696297(probes 227448:227486)      	0.0085154	   0.0085154	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0139	0.39112	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7251	0	1.4421	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 11 - log2 ratios	7q21.2  	chr7:91663105-92829422(probes 229425:229566)      	chr7:91920704-92368853(probes 229440:229488)      	chr7:91920704-92368853(probes 229440:229488)      	0.036395	    0.036395	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.43261	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.36612	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7114	0	0	0	0	0	0.991	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.4781	0	0	0	
Stanford_focal_080606	Amplification Peak 12 - log2 ratios	7q31.2  	chr7:116100223-116364359(probes 233146:233194)  	chr7:116106239-116297474(probes 233147:233179)  	chr7:116059029-117302075(probes 233142:233336)  	1.1927e-06	  1.1927e-06	focal	Actual Log2 Ratio Given	0	0	0	0	0	0.5388	0	0	0	0	0	0.8089	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.953	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7393	0	1.1764	0	0	0	0	0	0	0	0	1.2138	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0836	0	0	
Stanford_focal_080606	Amplification Peak 13 - log2 ratios	7q31.31 	chr7:119392773-119834839(probes 233573:233610)  	chr7:119577339-119629920(probes 233590:233594)  	chr7:119577339-119629920(probes 233590:233594)  	0.044737	     0.20868	focal	Actual Log2 Ratio Given	0	0	0	0	0	0.5388	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4361	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9484	0	0	
Stanford_focal_080606	Amplification Peak 14 - log2 ratios	7q32.1  	chr7:127448000-131022590(probes 234860:235418)  	chr7:127879231-128371319(probes 234917:234964)  	chr7:127879231-128371319(probes 234917:234964)  	0.2327	      0.2327	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	1.4609	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.4009	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.4745	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 15 - log2 ratios	7q34    	chr7:141918096-142086317(probes 237425:237441)  	chr7:141918683-142031221(probes 237426:237434)  	chr7:141915075-142213325(probes 237421:237446)  	0.0020705	   0.0020705	focal	Actual Log2 Ratio Given	0	0.5301	0	0	0.463	0	0	0	0	0	0	0	0	0	0	0	0.4013	0	0	0	0	0.56131	0	0	0	0	0	0	0	0	0	0	0	0	0.4345	0	0	0	0	0	0	0	0.4392	0	0	0	0	0	0	0	0.4166	0	0	0	0	0	0	0	0	0.7994	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 16 - log2 ratios	7q35    	chr7:144451610-145455132(probes 237693:237837)  	chr7:145332650-145372471(probes 237817:237822)  	chr7:145332650-145372471(probes 237817:237822)  	0.095426	    0.095426	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4207	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2716	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 17 - log2 ratios	7q36.1  	chr7:151056383-152254544(probes 238986:239190)  	chr7:152051432-152175569(probes 239175:239178)  	chr7:152051432-152175569(probes 239175:239178)  	0.1857	      0.1857	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3535	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4616	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6187	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 18 - log2 ratios	11q23.3 	chr11:116809407-116821755(probes 339040:339045)	chr11:116809407-116817298(probes 339040:339043)	chr11:116809407-116821755(probes 339040:339045)	0.026868	    0.026868	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7004	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6135	0	0	0.8069	0	0	0	0	0	0	0	0.98538	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 19 - log2 ratios	12q12   	chr12:33874676-36696953(probes 350820:350823)    	chr12:33874676-36696953(probes 350820:350823)    	chr12:33874676-36743815(probes 350820:350825)    	3.2055e-15	  3.2055e-15	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0.5606	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3012	0	0	0	0	0	0.4859	0	0	0	0	0.2377	0.4654	0	0	0	0	0.4692	0	0.7494	0	0.6217	0.2871	0	0.4684	0.4653	0	0.2981	0	0	0.3473	0.4197	0.3416	0	0	0	0.305	0	0	0	0	0.32117	0	0	0	0	0	0	0	0	0	0	0	0.3163	0	0	0	0	0	0	0	0.4607	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3785	0	0	0	0	0	0.3826	0	0	0	0	0	0.5152	0	0	0	0	0	0	0.43614	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.4814	0	0	0	0	0	0	0	0.27279	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3212	0	0	0.2513	0	0.4536	0	0	0.242	0.46174	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 20 - log2 ratios	12q13.11	chr12:44679429-45061037(probes 352229:352296)    	chr12:44900909-44941553(probes 352284:352289)    	chr12:44900909-44941553(probes 352284:352289)    	0.01153	     0.01153	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.5021	0	0	0	0	1.4879	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4803	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 21 - log2 ratios	12q13.3 	chr12:56134907-56232743(probes 353955:353963)    	chr12:56157823-56206528(probes 353960:353960)    	chr12:55869940-58278277(probes 353936:354258)    	3.2616e-19	    0.031177	focal	Actual Log2 Ratio Given	0	1.1836	1.2078	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.5784	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8841	0	0	0.3962	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6607	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.624	0	0	0	0	0.9462	0	0	0	0.8343	0	0	0	0	0	0	0	1.0104	0	0	0	0	0	0	0	0.4865	0.94319	0	0	0.8832	0	0	0.7864	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.19596	0	0	0.87124	0	0	0	0.7476	0.7716	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.49	0	0	
Stanford_focal_080606	Amplification Peak 22 - log2 ratios	12q14.1 	chr12:56373754-56540281(probes 353981:353987)    	chr12:56451353-56463558(probes 353982:353982)    	chr12:55869940-58278277(probes 353936:354258)    	6.2937e-31	  4.4579e-29	focal	Actual Log2 Ratio Given	0	1.1836	1.2078	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3021	0	0	0	0	0	0	1.0045	0	0	0	0	0	0.9877	0	0	0	0	0	0	0	0	0	1.0292	1.0837	0	0.3962	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6607	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1509	0.624	0	0	0	0	0.9462	0	0	0	0.8343	0	0	0	0	0	0	0	1.0104	0	0.9448	0	0	0	0	0	0.4865	0.94319	0	0	1.199	-0.9854	0	0.7631	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.19596	0.6631	0	0.87124	0	0	0	0.7476	0.7716	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 23 - log2 ratios	12q14.1 	chr12:57568970-57719039(probes 354142:354166)    	chr12:57568970-57599417(probes 354142:354147)    	chr12:55869940-58278277(probes 353936:354258)    	5.6059e-08	    0.015966	focal	Actual Log2 Ratio Given	0	0	1.2078	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0045	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0244	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9448	0	0	0	0	0	0	-0.65581	0	0	0.8675	-0.9854	0	0.8457	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.19596	0.5949	0	0	0	0	0	0	0.7716	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 24 - log2 ratios	12q14.1 	chr12:58467232-58619522(probes 354289:354311)    	chr12:58520214-58607749(probes 354302:354310)    	chr12:58467232-58619522(probes 354289:354311)    	0.0094368	     0.23242	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0045	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.4714	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.5736	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.5906	0	0	0	0	0	0	0	0	0	0	0	-0.65581	0	0	1.1338	-0.9854	0	1.2029	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.19596	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 25 - log2 ratios	12q14.1 	chr12:59539753-59650781(probes 354404:354416)    	chr12:59569068-59602057(probes 354408:354409)    	chr12:59233663-59741053(probes 354376:354426)    	1.8677e-07	  4.2095e-06	focal	Actual Log2 Ratio Given	0	0	1.242	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7771	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.4549	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.5736	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9762	0	0	0	0	0	1.4803	0.94809	0	0	1.4594	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.185	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 26 - log2 ratios	12q14.1 	chr12:59935618-60263258(probes 354452:354518)    	chr12:60013947-60047768(probes 354464:354473)    	chr12:59835349-60263258(probes 354436:354518)    	0.00010727	    0.055348	focal	Actual Log2 Ratio Given	0	0	1.242	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7771	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.4549	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.61841	0	0	1.4594	0	0	1.3876	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.185	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 27 - log2 ratios	12q14.1 	chr12:60834721-60886899(probes 354639:354657)    	chr12:60854639-60879107(probes 354649:354656)    	chr12:60401433-61165236(probes 354536:354699)    	0.0003592	    0.010059	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9543	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3447	1.4994	0	0	0	0	0	0	0	0	0	-0.4549	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.5795	0	0	0	0	0	0	0	0	0	0	0	0	0	0.67236	0	0	0	0	0	0	0	0	0	0	0	-0.61841	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.185	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 28 - log2 ratios	12q14.2 	chr12:61384863-61487531(probes 354764:354782)    	chr12:61389354-61461615(probes 354765:354772)    	chr12:61314417-61884650(probes 354729:354886)    	0.0038685	    0.057422	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8267	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3095	0	0	0	0	0	0	0	0	0	0	-0.4549	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.5795	0	0	0	0	0	0	0	0	0	0	0	0	0	0.4397	0	0	0	0	0	0	0	0	0	0	0	-0.61841	0	0	0	0	0	1.0879	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.185	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 29 - log2 ratios	12q14.2 	chr12:62806074-62986026(probes 354988:355009)    	chr12:62831970-62893748(probes 354994:354999)    	chr12:62135183-63609373(probes 354921:355109)    	3.0059e-08	  7.7694e-07	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8267	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1851	0	0	0	0	0	0	0	0	0	0	-0.4549	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.5655	0	0	0	0	0	0	0	0	0	0	0	0	0	1.301	0	0	0	0	0.8921	0	0	0	0	0	0	0.80269	0	0	1.2956	0	0	1.1698	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.185	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 30 - log2 ratios	12q14.3 	chr12:64478935-64628383(probes 355243:355257)    	chr12:64478935-64529768(probes 355243:355249)    	chr12:64478935-64628383(probes 355243:355257)    	0.0043588	     0.03572	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8267	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2974	0	0	0	0	0	0	0	0	0	-0.4549	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.5739	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.60931	0	0	0.927	0	0	0	0	0	0.7673	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 31 - log2 ratios	12q14.3 	chr12:65433871-65665628(probes 355441:355510)    	chr12:65512630-65543629(probes 355467:355472)    	chr12:64868153-66312236(probes 355301:355670)    	6.6893e-05	       0.149	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9545	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.4549	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.5681	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3843	0	0	0	0	0.8699	0	0	0	0	0	0	-0.60931	0	0	1.2258	0	0	0.8714	0	0	0.9012	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 32 - log2 ratios	12q14.3 	chr12:65822927-66072693(probes 355552:355595)    	chr12:65872312-65946871(probes 355562:355566)    	chr12:64868153-66312236(probes 355301:355670)    	1.0265e-07	  2.2988e-06	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9545	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.4549	0	0	0	0	0	0	0	1.0527	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.5681	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8699	0	0	0	0	0	0	-0.60931	0	0	1.3168	0	0	0.8714	0	0	0.8105	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3878	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 33 - log2 ratios	12q15   	chr12:66664694-66765804(probes 355761:355789)    	chr12:66672134-66717473(probes 355763:355774)    	chr12:66359082-66879473(probes 355683:355820)    	2.9345e-05	     0.21453	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9545	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2729	0	0	0	0	0	0	0	0	0	0	-0.4549	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8699	0	0	0	0	0	0	-0.60931	0	0	1.0397	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3318	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 34 - log2 ratios	12q15   	chr12:66795362-66850943(probes 355802:355809)    	chr12:66820788-66834489(probes 355805:355805)    	chr12:66359082-66879473(probes 355683:355820)    	3.741e-07	  0.00011221	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9545	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2729	0	0	0	0	0	0	0	0	0	0	-0.4549	0	0	0	0	0	0	0	1.3973	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4668	0	0	0	0	0.8699	0	0	0	0	0	0	-0.61121	0	0	0	0	0	0	0	0	0.8971	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 35 - log2 ratios	12q15   	chr12:67030805-67085810(probes 355877:355905)    	chr12:67053395-67065866(probes 355888:355892)    	chr12:67025934-69853222(probes 355875:356602)    	5.7781e-06	     0.20704	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4453	0	0	0	0	0.9545	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.4549	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.2702	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9382	0	0	0	0	0	0	-0.61121	0	0	1.1737	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2137	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 36 - log2 ratios	12q15   	chr12:67142000-67235783(probes 355932:355955)    	chr12:67180246-67235783(probes 355944:355955)    	chr12:67025934-69853222(probes 355875:356602)    	1.0567e-08	  0.00017726	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4453	0	0	0	0	0.9545	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1577	0	0	0	0	0	0	0	0	0	0	-0.4549	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1429	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.2702	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9382	0	0	0	0	0	0	-0.61121	0	0	1.4594	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.571	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 37 - log2 ratios	12q15   	chr12:67467111-67552673(probes 355982:355990)    	chr12:67467111-67543708(probes 355982:355988)    	chr12:67025934-69853222(probes 355875:356602)    	1.8414e-37	  1.8414e-37	focal	Actual Log2 Ratio Given	0	0	1.1175	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0304	0	0	0	1.4568	0	0	0	0	0.9545	0	0	0	0	1.3377	0	0	0	0	0	0	0	0	0	0	1.1577	1.4845	0	0	0	0	0	0	0	0	0	-0.4549	0	0	0	0	0	0	0	0.9634	0	0	0	0.3779	0	0	1.0692	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0574	0	0	0	0	0	0	0	0	1.3357	0	0	0	0	0.9382	0	0	0	0	0	1.2545	1.0796	0	0	1.2593	0	0	1.0798	0	0	1.2217	0	0	0	0	0	0	0	0	0	1.2336	0	0	0	0.5198	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2715	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1719	0	0	
Stanford_focal_080606	Amplification Peak 38 - log2 ratios	12q15   	chr12:67933546-68085914(probes 356094:356119)    	chr12:67957426-68029658(probes 356098:356105)    	chr12:67025934-69853222(probes 355875:356602)    	4.3176e-15	   0.0076441	focal	Actual Log2 Ratio Given	0	0	1.1175	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9545	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4845	0	0	0	0	0	0	0	0	0	-0.4549	0	0	0	0	0	0	0	0.9634	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3217	0	0	0	0	1.0574	0	0	0	0	0	0	0	0	1.1608	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9961	0	0	0	0	0	1.2217	0	0	0	0	0	0	0	0	0	1.2336	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.133	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 39 - log2 ratios	12q15   	chr12:68259660-68384131(probes 356159:356205)    	chr12:68275143-68333764(probes 356161:356179)    	chr12:67025934-69853222(probes 355875:356602)    	6.9448e-11	     0.20549	focal	Actual Log2 Ratio Given	0	0	1.1175	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9545	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4101	1.4845	0	0	0	0	0	0	0	0	0	-0.4549	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0574	0	0	0	0	0	0	0	0	1.1608	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.982	0	0	0	0	0	1.2217	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 40 - log2 ratios	12q15   	chr12:68931660-68999921(probes 356357:356364)    	chr12:68931660-68965856(probes 356357:356358)    	chr12:67025934-69853222(probes 355875:356602)    	7.6272e-09	  0.00075842	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9545	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4845	0	0	0	0	0	0	0	0	0	-0.4549	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3672	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4277	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4594	0	0	1.1175	0	0	1.2217	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 41 - log2 ratios	12q15   	chr12:69289161-69537396(probes 356459:356535)    	chr12:69326404-69340571(probes 356480:356481)    	chr12:67025934-69853222(probes 355875:356602)    	2.4503e-06	   0.0038811	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9545	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4845	0	0	0	0	0	0	0	0	0	0.706	0	0	0	0	0	0	0	1.096	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0813	0	0	0.9638	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 42 - log2 ratios	12q15   	chr12:69696450-69853222(probes 356579:356602)    	chr12:69729187-69809400(probes 356587:356594)    	chr12:67025934-69853222(probes 355875:356602)    	0.00067908	    0.011836	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9545	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2262	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3129	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7546	0	0	0	0	0	0	0	0	0	1.1618	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 43 - log2 ratios	19p13.3 	chr19:1-1121444(probes 461332:461470)                	chr19:1-715388(probes 461332:461435)                 	chr19:1-715388(probes 461332:461435)                 	0.10654	     0.10654	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0.4429	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.4731	0	0	0	0	0	0	0	0	0	0	0	0	0	0.4826	0	0	0	0	0	0	0	0	0	0	0	0	0.2698	0	0	0	0	0	0	0	0	0	0.4554	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.5248	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Amplification Peak 44 - log2 ratios	19q12   	chr19:24159894-32836339(probes 464756:464765)    	chr19:32640703-32770984(probes 464758:464763)    	chr19:24159894-33022747(probes 464756:464774)    	2.6724e-21	  2.6724e-21	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.5359	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.5225	0	0.5806	0.399	0	0	0	0	0	0	0.4979	0	0.5872	0	0	0.585	0	0	0	0	0	0	0	0	0	0	0.5725	0	0	0	0.2999	0	0	0	0.3246	0.366	0	0	0	0	0	0	0	0	0	0	0	0	0.6345	0.4816	0.6168	0.57313	0	0	0	0	0	0	0.6266	0	0.276	0	0	0	0.4256	0	0.577	0	0	0.5212	0	0.528	0	0	0	0	0	0	0.3748	0	0	0	0	0	0	0.5383	0.6233	0	0	0	0	0	0.46365	0	0	0	0.4434	0	0.58384	0.4475	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.35404	0.7292	0	0.6069	0	0	0	0	0	
Stanford_focal_080606	Deletion Peak 1 - log2 ratios	1p36.23 	chr1:7592601-8018086(probes 1111:1166)            	chr1:7922190-8018086(probes 1156:1166)            	chr1:7922190-7947178(probes 1156:1157)            	0.011758	     0.24519	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4452	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0629	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.5303	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Deletion Peak 2 - log2 ratios	1p36.23 	chr1:8236482-9319246(probes 1212:1385)            	chr1:8346098-9319246(probes 1228:1385)            	chr1:8236482-9319246(probes 1212:1385)            	0.00039789	  0.00039789	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4452	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5141	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4764	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.3947	0	0	0	0	
Stanford_focal_080606	Deletion Peak 3 - log2 ratios	1p33    	chr1:50906925-51257213(probes 7858:7880)        	chr1:50931936-51235026(probes 7859:7875)        	chr1:50841691-51307967(probes 7849:7885)        	9.5718e-06	  9.5718e-06	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.532	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5639	0	0	0	0	0	0	0	0	-1.1214	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0525	0	0	-0.3975	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5579	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Deletion Peak 4 - log2 ratios	3q28    	chr3:192548087-192555921(probes 115486:115490)	chr3:192548087-192550981(probes 115486:115488)	chr3:192547223-192555921(probes 115485:115490)	1.8122e-09	  1.8122e-09	focal	Actual Log2 Ratio Given	0	0	-0.6242	0	0	0	0	0	0	0	-1.4993	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5488	0	0	0	0	0	0	0	0	0	-1.5943	0	0	0	0	-1.5807	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.6188	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5149	0	0	-0.69472	0	0	0	0	0	-0.5414	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Deletion Peak 5 - log2 ratios	6q25.2  	chr6:154845377-154854135(probes 209687:209690)	chr6:154845377-154854135(probes 209687:209690)	chr6:154845377-154854135(probes 209687:209690)	0.21777	     0.21777	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	-0.79822	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.8287	0	0	0	0	0	0	-1.4764	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Deletion Peak 6 - log2 ratios	9p23    	chr9:10008122-12190956(probes 270683:271037)    	chr9:10639386-10676547(probes 270817:270827)    	chr9:10639386-10676547(probes 270817:270827)    	0.15853	     0.15853	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.5583	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0707	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5379	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Deletion Peak 7 - log2 ratios	9p22.1  	chr9:19712761-19995311(probes 273356:273423)    	chr9:19736627-19746768(probes 273361:273365)    	chr9:19451194-30494424(probes 273268:275789)    	2.5357e-19	    0.001105	focal	Actual Log2 Ratio Given	0	0	0	0	-1.5346	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5381	0	0	0	0	0	0	0	0	0	0	-0.87	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0879	0	0	0	0	0	0	0	-0.84208	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.6311	0	0	-1.5639	0	0	0	-1.5721	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5141	0	0	0	0	0	0	0	0	0	0	-1.2196	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5383	0	0	0	0	0	0	0	0	0	-1.2973	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4718	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.5624	0	0	0	0	
Stanford_focal_080606	Deletion Peak 8 - log2 ratios	9p21.3  	chr9:20661513-20943749(probes 273588:273662)    	chr9:20707021-20887265(probes 273602:273652)    	chr9:19451194-30494424(probes 273268:275789)    	8.2275e-46	    0.011787	focal	Actual Log2 Ratio Given	0	0	0	0	-1.5346	0	0	0	-1.5133	0	0	0	0	0	-1.3397	0	0	0	0	-1.5381	0	-1.5342	0	0	0	0	0	0	0	0	-0.9646	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.84208	0	0	-1.5479	0	0	0	0	0	0	-1.4835	0	0	0	0	-0.673	0	0	-1.5639	0	0	0	-1.5721	0	0	0	0	0	-1.0867	0	0	0	0	0	0	0	0	0	0	0	-1.5141	0	0	0	0	0	0	0	-1.5003	0	0	-1.223	0	0	0	0	0	0	0	0	0	0	0	-1.3248	0	0	0	0	0	0	-1.5383	0	0	0	0	0	0	0	0	0	-1.2973	0	0	-1.0875	0	0	0	0	0	0	0	0	0	0	0	0	-1.5168	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.6018	-1.4718	0	0	0	0	0	0	0	-1.5411	0	0	0	0	0	0	0	0	0	0	-0.5624	0	0	0	0	
Stanford_focal_080606	Deletion Peak 9 - log2 ratios	9p21.3  	chr9:21964219-21996272(probes 273875:273882)    	chr9:21970152-21987871(probes 273876:273877)    	chr9:19451194-30494424(probes 273268:275789)    	3.1018e-289	 3.1018e-289	focal	Actual Log2 Ratio Given	-0.979	0	0	0	-1.5346	0	0	-1.5448	-1.5133	-1.5391	-0.777	-1.5347	0	0	-1.3241	0	0	-0.7392	-1.4899	-1.5381	0	-1.5342	0	-1.25	0	0	0	-0.4153	0	0	-0.9646	-1.3439	0	0	-1.2761	0	0	0	0	0	0	-0.5745	-1.1192	0	-1.168	0	0	-1.5673	0	-0.687	0	0	-0.84208	-1.5189	0	-1.5479	0	-0.7421	0	-1.5793	-1.0042	-1.553	-1.4835	-1.5488	0	-1.5487	-0.5692	-0.673	0	0	-1.5639	0	0	0	-1.5721	-1.5651	0	-1.3408	-1.5807	-1.1448	-1.0867	0	-1.3315	-0.8336	-1.5038	-1.5008	-0.9969	0	0	0	0	-0.8061	-1.5141	0	0	0	-1.1923	-1.5082	0	0	-1.5003	0	0	-1.223	-1.1567	0	-1.4814	0	-0.8368	-0.7027	0	-0.7514	-0.9488	0	0	-1.3248	0	0	0	-0.4474	0	0	-1.5383	-1.5287	-1.507	0	0	-0.6897	0	0	-0.5827	0	-1.2973	0	-0.5544	-1.0875	0	-1.0579	-0.81214	0	0	0	-1.548	-0.894	-1.5117	0	0	-1.5579	-1.5168	-1.4776	0	-1.1305	0	-1.5397	-1.5169	-1.52	-1.5534	0	-0.96224	-1.0617	-1.3601	-1.5375	0	0	0	0	-1.5091	-0.49655	-1.5253	-1.6018	-1.4718	-0.7247	-1.4764	0	0	-1.5149	-0.7237	-1.262	-1.5411	-0.5698	-1.5572	0	-1.6085	-1.5266	-1.5323	-0.92006	0	-1.4826	-1.5209	-1.3947	-1.5563	0	0	-1.1188	
Stanford_focal_080606	Deletion Peak 10 - log2 ratios	9p21.3  	chr9:22462290-22552120(probes 273973:273988)    	chr9:22522876-22531136(probes 273983:273983)    	chr9:19451194-30494424(probes 273268:275789)    	1.3041e-120	  1.1227e-05	focal	Actual Log2 Ratio Given	-0.4854	0	0	0	-1.5346	0	0	-1.5448	0	0	-1.4993	-1.5347	0	0	0	0	0	0	-1.4899	0	0	-1.5342	0	0	0	0	0	-0.4153	0	0	-1.0821	-0.5255	0	0	-1.2761	0	0	0	0	0	0	-0.5745	0	0	0	0	0	0	0	-0.687	0	0	0	-1.5189	0	-1.5479	0	0	0	0	0	0	-1.4835	-1.5488	0	0	-0.5433	0	0	0	-1.5639	0	0	0	-1.5721	-1.5651	0	0	-1.5807	-1.1448	-1.0867	0	-1.3315	-0.8336	-1.5038	-1.5008	-1.0028	0	0	0	0	0	-1.5141	0	0	0	0	0	0	0	-1.5003	0	0	0	0	0	-1.5315	0	-0.8368	0	0	-0.7514	0	0	0	0	0	0	0	0	0	0	0	0	-1.507	0	0	0	0	0	-0.5827	0	-1.2973	0	-0.5544	-1.0875	0	-1.0579	0	0	0	0	0	0	0	0	0	0	0	-1.4776	0	-1.1305	0	0	0	0	-0.7979	0	0	-0.46071	-1.3601	-1.5375	0	0	0	0	-1.5091	-0.49655	0	-1.6018	0	0	-1.4764	0	0	0	-0.7237	-1.262	-1.5411	0	0	0	-1.6085	0	0	0	0	-1.4826	0	-1.3947	-1.5563	0	0	-1.1188	
Stanford_focal_080606	Deletion Peak 11 - log2 ratios	9p21.3  	chr9:23628687-23749367(probes 274196:274253)    	chr9:23660124-23731247(probes 274217:274249)    	chr9:19451194-30494424(probes 273268:275789)    	1.0881e-73	  4.9879e-08	focal	Actual Log2 Ratio Given	-0.4854	0	0	0	-1.5346	0	0	-1.5448	0	0	-1.4993	0	0	0	0	0	0	0	-1.4899	0	0	-1.5342	0	0	0	0	0	-0.4153	0	0	-0.9759	0	0	-1.1506	-1.2761	0	0	0	0	0	0	-0.5745	0	0	-1.107	0	0	0	0	-0.687	0	0	0	0	0	-1.5479	0	0	0	0	0	0	-1.4835	0	0	0	-0.5072	0	0	0	0	0	0	0	0	0	0	0	-1.5807	0	-1.0867	0	0	-0.8683	-1.5038	0	-1.0424	0	0	0	0	0	-1.5141	0	0	0	0	0	0	0	-1.5003	0	0	0	0	0	0	0	0	0	0	-0.7514	0	0	0	0	0	0	0	0	0	0	0	0	-1.507	0	-0.38855	0	0	0	-0.5827	0	-1.2973	0	0	-1.0875	0	-1.0207	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.1305	0	0	0	0	0	0	0	-0.46071	0	-1.5375	0	0	0	0	0	0	0	-1.6018	0	0	-1.4764	0	0	0	0	-1.262	0	0	0	0	-1.6085	0	0	0	0	-1.4826	0	-1.3947	-1.5563	0	0	-1.1188	
Stanford_focal_080606	Deletion Peak 12 - log2 ratios	9p21.2  	chr9:25690572-25862204(probes 274552:274601)    	chr9:25693272-25727566(probes 274553:274564)    	chr9:19451194-30494424(probes 273268:275789)    	1.0021e-38	   0.0038509	focal	Actual Log2 Ratio Given	-0.4854	0	0	0	0	0	0	0	0	0	-1.4993	0	0	0	0	0	0	0	0	0	0	-1.5342	0	0	0	0	0	-0.4153	0	0	-1.0472	0	0	0	-1.2761	0	0	0	0	0	0	-0.5745	0	0	0	0	0	0	0	-0.687	0	0	0	0	0	-1.5479	0	0	0	0	0	0	-1.4835	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5038	0	-1.0737	0	0	0	0	0	-1.5141	0	0	0	0	0	0	0	-1.5003	0	0	0	0	0	0	0	0	0	0	-0.7514	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.2973	0	0	-1.0875	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.197	0	0	0	0	0	0	0	0	0	-1.5375	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.262	0	0	0	0	-1.6085	0	0	0	0	-1.4826	0	-1.3947	-1.5563	0	0	0	
Stanford_focal_080606	Deletion Peak 13 - log2 ratios	9p21.2  	chr9:26307243-26407713(probes 274723:274741)    	chr9:26307308-26366869(probes 274724:274733)    	chr9:19451194-30494424(probes 273268:275789)    	7.9087e-38	  2.7733e-13	focal	Actual Log2 Ratio Given	-0.4854	0	0	0	0	0	0	0	0	0	-1.4993	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.4153	0	0	-0.9177	0	0	0	-1.2761	0	0	0	0	0	0	-0.5745	0	0	-1.2323	0	0	0	0	-0.687	0	0	0	0	0	-1.5479	0	0	0	0	0	0	-1.4835	0	0	0	-0.5453	0	0	0	0	0	0	0	0	0	0	0	-1.5807	0	0	0	0	0	-1.5038	0	-0.9724	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5003	0	0	0	0	0	0	0	0	0	0	-0.7514	0	0	0	0	0	0	0	0	0	0	0	0	-1.507	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.6604	0	0	0	0	0	0	0	-1.1158	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.262	0	0	0	0	0	0	0	-1.5421	0	-1.4826	0	-1.3947	-1.5563	0	0	0	
Stanford_focal_080606	Deletion Peak 14 - log2 ratios	9p21.2  	chr9:26633036-26757509(probes 274807:274842)    	chr9:26649563-26663734(probes 274813:274814)    	chr9:19451194-30494424(probes 273268:275789)    	5.1706e-26	     0.24519	focal	Actual Log2 Ratio Given	-0.4854	0	0	0	0	0	0	0	0	0	-1.4993	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.4153	0	0	-0.9177	0	0	0	-1.2761	0	0	0	0	0	0	-0.5745	0	0	0	0	0	0	0	-0.687	0	0	0	0	0	-1.5479	0	0	0	0	0	0	-1.4835	0	0	0	-0.5453	0	0	0	0	0	0	0	0	0	0	0	-1.5807	0	0	0	0	0	-1.5038	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5003	0	0	0	0	0	0	0	0	0	0	-0.7514	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.1158	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.262	0	0	0	0	0	0	0	0	0	-1.4826	0	-1.3947	-1.5563	0	0	0	
Stanford_focal_080606	Deletion Peak 15 - log2 ratios	9p21.1  	chr9:29736546-29999443(probes 275704:275738)    	chr9:29806466-29889073(probes 275723:275734)    	chr9:19451194-30494424(probes 273268:275789)    	1.5208e-05	  0.00072832	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	-1.4993	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.2043	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5003	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.18546	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.49915	0	0	0	0	-0.86632	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4826	0	0	0	0	0	0	
Stanford_focal_080606	Deletion Peak 16 - log2 ratios	10q23.2 	chr10:89545695-89635452(probes 309086:309100)  	chr10:89589557-89596168(probes 309097:309097)  	chr10:89314644-90317632(probes 309027:309259)  	3.5375e-19	  3.5375e-19	focal	Actual Log2 Ratio Given	0	0	-0.8843	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.8045	0	0	-0.9239	-1.5342	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4969	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9715	0	0	0	0	0	0	0	0	0	0	0	0	-1.6428	0	-0.8862	-1.5397	-1.5169	0	0	0	0	0	-1.3983	0	0	0	0	0	0	0	0	0	0	-0.8664	0	0	0	0	0	0	0	-0.5976	0	0	0	0	0	0	0	0	0	0	-1.5563	0	-0.51104	0	
Stanford_focal_080606	Deletion Peak 17 - log2 ratios	10q23.31	chr10:89883595-90151724(probes 309169:309237)  	chr10:89972719-89987474(probes 309198:309203)  	chr10:89314644-90317632(probes 309027:309259)  	5.3307e-11	  0.00073524	focal	Actual Log2 Ratio Given	0	0	-0.8843	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9239	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9715	-0.87914	0	0	0	0	0	0	0	0	0	0	0	-1.6428	0	-0.8862	0	-1.5169	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.5976	0	0	0	0	0	0	0	0	0	0	-1.5563	0	-1.5266	0	
Stanford_focal_080606	Deletion Peak 18 - log2 ratios	10q23.31	chr10:90651679-90687674(probes 309337:309349)  	chr10:90680446-90685963(probes 309345:309348)  	chr10:90436216-90875115(probes 309281:309405)  	0.00011014	    0.048083	focal	Actual Log2 Ratio Given	0	0	-0.8843	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5342	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5169	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5563	0	-0.7681	0	
Stanford_focal_080606	Deletion Peak 19 - log2 ratios	12q14.1 	chr12:58452259-59101538(probes 354286:354354)  	chr12:58530907-58593473(probes 354304:354309)  	chr12:58530907-58593473(probes 354304:354309)  	0.13725	     0.13725	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0045	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.4714	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.5736	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.5906	0	0	0	0	0	0	0	0	0	0	0	-0.65581	0	0	1.1338	-0.9854	0	1.2029	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.19596	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_focal_080606	Deletion Peak 20 - log2 ratios	13q21.1 	chr13:57001073-57432002(probes 376784:376819)  	chr13:57124944-57196411(probes 376786:376799)  	chr13:57124944-57196411(probes 376786:376799)  	0.021365	    0.021365	focal	Actual Log2 Ratio Given	-0.3769	0	0	0	0	0	0	0	0	0	0	0	0	-1.5509	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0115	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.4784	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.8039	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 1	1p36.12 	chr1:20907696-20932942(probes 9453:9470)            	chr1:20907696-20924301(probes 9453:9468)            	chr1:20907696-20924301(probes 9453:9468)            	0.15893	     0.15893	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 2	1q22    	chr1:154500104-154771299(probes 72937:73054)      	chr1:154726324-154747454(probes 73029:73039)      	chr1:154726324-154747454(probes 73029:73039)      	0.07964	     0.07964	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 3	1q32.1  	chr1:202299662-203007854(probes 103166:103742)    	chr1:202413810-202818452(probes 103263:103593)    	chr1:201327874-203776864(probes 102600:104231)    	3.7759e-14	  3.7759e-14	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 4	1q44    	chr1:241044757-242809557(probes 129619:130628)    	chr1:241500278-242803774(probes 129722:130625)    	chr1:241500278-242803774(probes 129722:130625)    	0.22556	     0.22556	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 5	3q26.33 	chr3:182207550-183214620(probes 377574:378120)    	chr3:182354608-182774112(probes 377643:377870)    	chr3:182207550-183214620(probes 377574:378120)    	0.054966	    0.054966	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	
Broad_focal_080606	Amplification Peak 6	4q12    	chr4:54506016-54554815(probes 417572:417592)        	chr4:54516108-54540980(probes 417573:417583)        	chr4:48783398-58279689(probes 416263:420171)        	2.5816e-37	  2.5815e-37	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	1	0	0	2	0	2	0	0	1	0	0	2	0	2	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	
Broad_focal_080606	Amplification Peak 7	4q22.1  	chr4:92134425-92137111(probes 439380:439393)        	chr4:92134465-92137111(probes 439381:439393)        	chr4:92134425-92137111(probes 439380:439393)        	0.010929	    0.010929	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 8	4q26    	chr4:119259774-119849393(probes 454788:455021)    	chr4:119633880-119685960(probes 454958:454975)    	chr4:119633880-119685960(probes 454958:454975)    	0.21641	     0.21641	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 9	7p22.1  	chr7:4869523-5274229(probes 705410:705589)            	chr7:4874896-4913130(probes 705415:705436)            	chr7:4869523-5274229(probes 705410:705589)            	0.052384	    0.052384	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 10	7p15.1  	chr7:30434582-30749287(probes 722018:722196)        	chr7:30444035-30505891(probes 722021:722052)        	chr7:30444035-30505891(probes 722021:722052)        	0.086013	    0.086013	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 11	7p14.3  	chr7:32968127-33000366(probes 723764:723775)        	chr7:32968945-32994943(probes 723765:723774)        	chr7:31697302-33869759(probes 722894:724347)        	5.3896e-10	  5.3896e-10	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	2	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	2	0	0	0	0	
Broad_focal_080606	Amplification Peak 12	7p12.1  	chr7:52608201-52776121(probes 736812:736900)        	chr7:52639081-52762956(probes 736844:736888)        	chr7:52580040-62270579(probes 736781:739808)        	1.2709e-07	   0.0011961	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 13	7p11.2  	chr7:54921812-54988715(probes 738402:738445)        	chr7:54931889-54988715(probes 738412:738445)        	chr7:52580040-62270579(probes 736781:739808)        	1.0737e-186	 1.0737e-186	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	2	0	2	2	0	2	2	2	2	0	2	2	0	2	0	0	0	2	0	0	0	0	0	2	2	0	0	2	2	0	0	2	2	0	0	2	2	2	2	2	2	0	0	0	2	2	2	0	2	0	0	0	0	2	2	2	0	2	0	0	2	0	2	0	0	0	0	2	2	2	2	2	2	0	2	2	0	0	0	2	0	2	2	0	0	0	2	0	0	0	0	0	2	2	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	2	2	2	0	0	2	0	0	2	0	0	0	0	2	2	0	0	2	2	2	0	2	2	0	0	0	2	0	0	2	0	0	2	0	2	0	2	0	0	2	0	0	0	0	0	0	0	2	0	0	0	2	2	0	2	0	2	0	0	
Broad_focal_080606	Amplification Peak 14	7p11.2  	chr7:55605095-55837594(probes 739027:739121)        	chr7:55747204-55791074(probes 739101:739105)        	chr7:52580040-62270579(probes 736781:739808)        	4.7244e-53	    0.028018	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	2	2	0	0	0	2	2	0	2	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	2	0	0	0	0	
Broad_focal_080606	Amplification Peak 15	7p11.2  	chr7:56527007-56744358(probes 739405:739465)        	chr7:56537744-56551323(probes 739411:739411)        	chr7:52580040-62270579(probes 736781:739808)        	3.928e-14	  9.7809e-05	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	
Broad_focal_080606	Amplification Peak 16	7q21.11 	chr7:78417226-78735106(probes 746560:746757)        	chr7:78429941-78477650(probes 746567:746604)        	chr7:78429941-78694006(probes 746567:746717)        	0.089254	    0.089254	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	
Broad_focal_080606	Amplification Peak 17	7q21.13 	chr7:86786164-90531752(probes 751812:752892)        	chr7:90100022-90295978(probes 752609:752718)        	chr7:90100022-90531752(probes 752609:752892)        	0.053032	     0.15366	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 18	7q21.2  	chr7:91681231-92433690(probes 753596:754177)        	chr7:91906552-92367835(probes 753703:754139)        	chr7:91581087-92838367(probes 753561:754370)        	0.00041973	  0.00041973	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	
Broad_focal_080606	Amplification Peak 19	7q31.2  	chr7:116101460-116366278(probes 766578:766844)    	chr7:116101460-116296083(probes 766578:766812)    	chr7:116066994-117302075(probes 766555:767366)    	6.0276e-08	  6.0276e-08	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 20	7q31.31 	chr7:120841695-120868549(probes 769331:769370)    	chr7:120848765-120856017(probes 769334:769347)    	chr7:120841695-120868549(probes 769331:769370)    	0.010038	    0.090943	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	
Broad_focal_080606	Amplification Peak 21	7q33    	chr7:133005453-133321358(probes 776667:776866)    	chr7:133106065-133311938(probes 776723:776861)    	chr7:133106065-133123644(probes 776723:776736)    	0.050608	    0.050608	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 22	7q34    	chr7:140121090-140134724(probes 781138:781160)    	chr7:140125428-140129128(probes 781145:781149)    	chr7:140125428-140129128(probes 781145:781149)    	0.15176	     0.15176	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 23	7q34    	chr7:141767721-142213197(probes 782212:782385)    	chr7:141882384-142023271(probes 782300:782329)    	chr7:141767721-142213197(probes 782212:782385)    	0.012073	    0.012073	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 24	9q33.2  	chr9:123909128-123922105(probes 940386:940397)    	chr9:123909128-123918518(probes 940386:940392)    	chr9:123909128-123922105(probes 940386:940397)    	0.094516	    0.094516	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 25	10p14   	chr10:11469998-11489797(probes 956681:956697)      	chr10:11476552-11489797(probes 956686:956697)      	chr10:11476552-11489797(probes 956686:956697)      	0.14768	     0.14768	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 26	11p15.5 	chr11:2746514-2782638(probes 1032377:1032389)        	chr11:2746514-2782638(probes 1032377:1032389)        	chr11:2746514-2782638(probes 1032377:1032389)        	0.011515	    0.011515	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 27	11p13   	chr11:32387436-33587367(probes 1052180:1052882)    	chr11:32456077-32468027(probes 1052275:1052281)    	chr11:32456077-32468027(probes 1052275:1052281)    	0.21641	     0.21641	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 28	11q23.3 	chr11:117777604-122947921(probes 1100002:1103653)	chr11:119162161-119178931(probes 1100831:1100841)	chr11:119162161-119178931(probes 1100831:1100841)	0.1712	      0.1712	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 29	12p13.32	chr12:4036724-4303899(probes 1114165:1114419)        	chr12:4266498-4278396(probes 1114363:1114395)        	chr12:4036724-4303899(probes 1114165:1114419)        	0.012073	    0.012073	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 30	12q13.11	chr12:44710119-45060211(probes 1137812:1138003)    	chr12:44900991-44919764(probes 1137958:1137967)    	chr12:44900991-44919764(probes 1137958:1137967)    	0.04014	     0.04014	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 31	12q13.13	chr12:48743573-48746517(probes 1139968:1139986)    	chr12:48743573-48745579(probes 1139968:1139983)    	chr12:48743573-48746517(probes 1139968:1139986)    	0.0085643	    0.017641	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 32	12q13.2 	chr12:53848881-53948272(probes 1142704:1142766)    	chr12:53870965-53918557(probes 1142720:1142743)    	chr12:53848881-53948272(probes 1142704:1142766)    	0.0051294	     0.14258	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 33	12q13.3 	chr12:55964838-56090302(probes 1143704:1143749)    	chr12:56025902-56052658(probes 1143727:1143736)    	chr12:55909438-58278467(probes 1143691:1145122)    	1.4935e-12	    0.022393	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	
Broad_focal_080606	Amplification Peak 34	12q13.3 	chr12:56149298-56211967(probes 1143788:1143804)    	chr12:56194980-56204268(probes 1143803:1143803)    	chr12:55909438-58278467(probes 1143691:1145122)    	1.6314e-29	  7.8569e-05	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	2	2	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	
Broad_focal_080606	Amplification Peak 35	12q14.1 	chr12:56370612-56480203(probes 1143884:1143894)    	chr12:56370612-56459195(probes 1143884:1143887)    	chr12:55909438-58278467(probes 1143691:1145122)    	7.6752e-45	  7.6751e-45	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	2	2	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	1	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	2	0	2	0	0	
Broad_focal_080606	Amplification Peak 36	12q14.1 	chr12:56860696-56968931(probes 1144119:1144182)    	chr12:56916607-56963222(probes 1144151:1144178)    	chr12:55909438-58278467(probes 1143691:1145122)    	9.4441e-10	    0.071904	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	
Broad_focal_080606	Amplification Peak 37	12q14.1 	chr12:57523880-57717551(probes 1144650:1144784)    	chr12:57567096-57596003(probes 1144675:1144693)    	chr12:55909438-58278467(probes 1143691:1145122)    	1.3491e-10	  0.00064562	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	
Broad_focal_080606	Amplification Peak 38	12q14.1 	chr12:58473933-58614293(probes 1145271:1145355)    	chr12:58521416-58614293(probes 1145298:1145355)    	chr12:58473933-58614293(probes 1145271:1145355)    	0.0081593	     0.17503	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 39	12q14.1 	chr12:59550576-59651211(probes 1145884:1145924)    	chr12:59565032-59601323(probes 1145891:1145904)    	chr12:58885479-60263258(probes 1145516:1146332)    	3.2808e-07	  3.7959e-05	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 40	12q14.3 	chr12:59936529-60263258(probes 1146115:1146332)    	chr12:60009263-69338567(probes 1146161:1152055)    	chr12:58885479-60263258(probes 1145516:1146332)    	0.00033834	     0.17503	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 41	12q14.1 	chr12:60675183-60795594(probes 1146571:1146656)    	chr12:60758839-60795594(probes 1146639:1146656)    	chr12:60428920-61169736(probes 1146420:1146855)    	0.0014081	    0.058278	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 42	12q14.2 	chr12:61359752-61878844(probes 1146975:1147354)    	chr12:61392976-61464296(probes 1146991:1147008)    	chr12:61316121-61878844(probes 1146943:1147354)    	0.0087368	     0.22556	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 43	12q14.2 	chr12:62136837-62437091(probes 1147464:1147502)    	chr12:62162567-62437091(probes 1147476:1147502)    	chr12:61971711-63876602(probes 1147435:1148297)    	0.00028124	     0.15366	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 44	12q14.2 	chr12:62822393-62943409(probes 1147702:1147764)    	chr12:62851658-62882992(probes 1147721:1147732)    	chr12:61971711-63876602(probes 1147435:1148297)    	3.1753e-07	  3.4281e-05	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 45	12q14.3 	chr12:64156569-64254522(probes 1148439:1148496)    	chr12:64174101-64196483(probes 1148449:1148456)    	chr12:64129882-64370496(probes 1148420:1148569)    	9.0785e-05	   0.0024287	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 46	12q14.3 	chr12:64490341-64619705(probes 1148657:1148712)    	chr12:64490341-64527638(probes 1148657:1148677)    	chr12:64490341-64619705(probes 1148657:1148712)    	0.00074896	    0.018028	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 47	12q14.3 	chr12:64868005-65540437(probes 1148867:1149353)    	chr12:64940780-64967715(probes 1148918:1148950)    	chr12:64868005-66309026(probes 1148867:1149960)    	0.0011693	     0.21641	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 48	12q14.3 	chr12:65836703-66040939(probes 1149611:1149741)    	chr12:65877313-65984440(probes 1149636:1149705)    	chr12:64868005-66309026(probes 1148867:1149960)    	2.0259e-08	   8.258e-07	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	
Broad_focal_080606	Amplification Peak 49	12q15   	chr12:66668518-66764237(probes 1150209:1150289)    	chr12:66679948-66717473(probes 1150218:1150252)    	chr12:66354860-66856789(probes 1149993:1150365)    	5.1675e-05	   0.0014081	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 50	12q15   	chr12:67068763-67171984(probes 1150591:1150652)    	chr12:67082175-67085810(probes 1150606:1150607)    	chr12:67030179-69844632(probes 1150542:1152400)    	2.6582e-07	  0.00029785	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 51	12q15   	chr12:67469546-67551864(probes 1150808:1150887)    	chr12:67501958-67546694(probes 1150840:1150881)    	chr12:67030179-69844632(probes 1150542:1152400)    	1.4638e-32	    2.32e-30	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	2	2	2	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	
Broad_focal_080606	Amplification Peak 52	12q15   	chr12:67941876-68024145(probes 1151150:1151198)    	chr12:67959854-67978432(probes 1151163:1151167)    	chr12:67030179-69844632(probes 1150542:1152400)    	9.3207e-15	    0.097895	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	2	0	2	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	
Broad_focal_080606	Amplification Peak 53	12q15   	chr12:68949270-69057858(probes 1151815:1151865)    	chr12:68978087-68990205(probes 1151835:1151837)    	chr12:67030179-69844632(probes 1150542:1152400)    	1.2429e-06	    0.039839	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 54	12q15   	chr12:69080454-69392927(probes 1151886:1152096)    	chr12:69289133-69338567(probes 1152015:1152055)    	chr12:67030179-69844632(probes 1150542:1152400)    	0.00053218	     0.17503	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 55	12q15   	chr12:69612281-69745233(probes 1152260:1152360)    	chr12:69697829-69722087(probes 1152334:1152345)    	chr12:67030179-69844632(probes 1150542:1152400)    	0.00035865	   0.0085643	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	
Broad_focal_080606	Amplification Peak 56	12q24.31	chr12:123346566-123641612(probes 1185483:1185495)	chr12:123356136-123641612(probes 1185490:1185495)	chr12:123346566-123641612(probes 1185483:1185495)	0.0087368	   0.0087368	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 57	13q14.2 	chr13:47786516-47797292(probes 1211647:1211658)    	chr13:47796161-47797252(probes 1211648:1211657)    	chr13:47796161-47797252(probes 1211648:1211657)    	0.1208	      0.1208	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 58	19p13.3 	chr19:1308844-2581324(probes 1478985:1479316)        	chr19:1374673-1427814(probes 1479009:1479022)        	chr19:1308844-2581324(probes 1478985:1479316)        	0.010929	    0.010929	focal	0: t<0.1699; 1: 0.1699<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 1	1p36.23 	chr1:8051998-9316594(probes 2860:3516)                	chr1:8109888-8140063(probes 2893:2908)                	chr1:8109888-8140063(probes 2893:2908)                	0.059017	    0.059017	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	
Broad_focal_080606	Deletion Peak 2	1p33    	chr1:51018466-51238240(probes 25375:25465)          	chr1:51051237-51226466(probes 25395:25462)          	chr1:50852566-51261437(probes 25322:25477)          	2.5222e-06	  2.5222e-06	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 3	3q13.31 	chr3:117363420-117500384(probes 340110:340201)    	chr3:117379569-117389782(probes 340121:340132)    	chr3:117379569-117389782(probes 340121:340132)    	0.1934	      0.1934	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 4	4q28.2  	chr4:130376070-130388030(probes 460606:460617)    	chr4:130376070-130388030(probes 460606:460617)    	chr4:130376070-130388030(probes 460606:460617)    	0.15231	     0.15231	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 5	8p23.2  	chr8:3571109-3575595(probes 793812:793827)            	chr8:3571679-3575595(probes 793816:793827)            	chr8:3570501-3576688(probes 793808:793831)            	3.3337e-06	  3.3337e-06	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 6	9p23    	chr9:10361074-10505243(probes 883830:883849)        	chr9:10374352-10383015(probes 883839:883847)        	chr9:10361074-10505243(probes 883830:883849)        	0.015407	    0.015407	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 7	9p22.1  	chr9:19719805-19995047(probes 890654:890878)        	chr9:19736627-19743996(probes 890671:890680)        	chr9:19473043-29283084(probes 890449:897053)        	6.3054e-18	  6.5894e-05	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	2	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 8	9p21.3  	chr9:20659941-20935206(probes 891336:891551)        	chr9:20858288-20896682(probes 891490:891519)        	chr9:19473043-29283084(probes 890449:897053)        	1.3196e-40	    0.015869	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	2	2	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	2	
Broad_focal_080606	Deletion Peak 9	9p21.3  	chr9:21464576-21591241(probes 891922:892023)        	chr9:21533597-21569121(probes 891993:892006)        	chr9:19473043-29283084(probes 890449:897053)        	2.5203e-112	      0.0523	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	2	2	2	2	1	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	2	2	1	0	2	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	2	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	2	2	2	2	0	0	0	2	2	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	2	0	1	2	0	0	1	0	2	0	0	0	0	0	0	2	0	2	0	0	2	2	1	0	0	2	0	2	0	0	2	0	0	0	2	0	0	1	0	0	1	2	0	0	0	0	0	2	0	2	2	0	0	0	0	0	2	
Broad_focal_080606	Deletion Peak 10	9p21.3  	chr9:21981924-21989614(probes 892268:892271)        	chr9:21981924-21989239(probes 892268:892270)        	chr9:19473043-29283084(probes 890449:897053)        	1.1621e-234	 1.1621e-234	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	2	2	2	2	1	0	0	2	0	0	2	0	2	0	1	0	0	2	0	2	0	0	0	0	2	0	0	2	2	0	0	2	1	0	0	2	2	2	2	1	2	2	0	0	1	0	1	0	2	0	1	2	0	2	0	2	0	0	0	2	0	0	2	0	2	0	2	2	0	0	0	0	0	2	2	2	1	0	1	0	0	0	2	0	0	2	1	2	2	0	0	2	2	2	0	2	0	0	0	1	0	0	2	0	0	0	0	0	1	0	0	1	2	1	1	2	0	0	1	2	2	0	2	2	2	0	1	2	0	2	0	2	2	2	1	0	0	2	2	2	0	0	2	0	1	0	2	1	0	2	0	0	1	2	0	0	0	0	2	2	2	2	2	1	0	0	0	2	2	
Broad_focal_080606	Deletion Peak 11	9p21.3  	chr9:22225347-22398132(probes 892457:892567)        	chr9:22318195-22370210(probes 892510:892547)        	chr9:19473043-29283084(probes 890449:897053)        	4.9866e-123	     0.13591	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	2	0	2	1	0	0	0	0	0	0	0	2	0	0	1	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	2	2	2	2	1	2	2	0	0	0	0	1	0	2	0	0	2	0	2	0	2	0	0	0	0	0	0	2	0	0	0	2	2	0	0	0	0	0	2	2	2	0	0	1	0	0	0	2	0	0	2	2	2	0	0	0	2	0	2	0	0	0	0	0	1	0	0	2	0	0	0	0	0	1	0	0	1	2	0	0	0	0	0	1	0	2	0	0	0	2	0	0	2	0	0	0	0	2	0	0	0	0	2	2	2	0	0	2	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	2	0	2	2	1	0	0	0	2	0	
Broad_focal_080606	Deletion Peak 12	9p21.3  	chr9:22455258-22533730(probes 892595:892638)        	chr9:22470924-22482888(probes 892598:892609)        	chr9:19473043-29283084(probes 890449:897053)        	3.4269e-112	  6.2791e-06	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	2	0	0	2	1	0	0	0	0	0	0	0	2	0	0	2	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	2	2	2	2	1	2	2	0	0	0	0	1	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	2	0	0	0	2	2	0	0	0	0	0	2	0	2	0	0	1	0	0	0	2	0	0	2	1	2	0	0	0	2	0	2	0	0	0	0	0	1	0	0	2	0	0	0	0	0	1	0	0	2	2	0	0	0	0	0	0	0	2	0	0	0	2	0	1	2	0	0	0	0	2	0	0	0	0	2	2	2	0	0	2	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	2	0	2	2	1	0	0	0	2	0	
Broad_focal_080606	Deletion Peak 13	9p21.3  	chr9:23617725-23737516(probes 893255:893367)        	chr9:23659527-23735601(probes 893298:893365)        	chr9:19473043-29283084(probes 890449:897053)        	6.652e-72	  3.7737e-14	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	2	1	0	0	0	0	0	0	0	2	0	0	1	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	2	2	2	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	2	0	0	0	0	0	2	0	2	0	0	1	0	0	0	2	0	0	2	2	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	2	0	1	2	0	0	0	0	0	0	0	0	0	0	2	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	2	0	
Broad_focal_080606	Deletion Peak 14	9p21.3  	chr9:24230406-24384048(probes 893672:893765)        	chr9:24236609-24288507(probes 893682:893709)        	chr9:19473043-29283084(probes 890449:897053)        	4.4823e-55	    0.058648	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	2	2	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	2	0	0	1	0	0	0	2	0	0	2	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	2	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	2	0	
Broad_focal_080606	Deletion Peak 15	9p21.3  	chr9:25193407-25299689(probes 893973:894065)        	chr9:25204556-25213188(probes 893983:893998)        	chr9:19473043-29283084(probes 890449:897053)        	2.7959e-39	   0.0011739	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	2	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	2	0	
Broad_focal_080606	Deletion Peak 16	9p21.2  	chr9:26043745-26148370(probes 894580:894647)        	chr9:26049721-26087290(probes 894586:894611)        	chr9:19473043-29283084(probes 890449:897053)        	2.2641e-33	   0.0025664	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	2	0	0	0	1	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	2	0	
Broad_focal_080606	Deletion Peak 17	9p21.2  	chr9:26307974-26432347(probes 894766:894850)        	chr9:26323943-26364297(probes 894772:894804)        	chr9:19473043-29283084(probes 890449:897053)        	2.1849e-35	  1.4782e-12	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	2	0	
Broad_focal_080606	Deletion Peak 18	9p21.1  	chr9:29370034-29810040(probes 897108:897429)        	chr9:29738354-29769549(probes 897376:897399)        	chr9:29370034-29998342(probes 897108:897496)        	0.00064858	    0.026061	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 19	10p15.3 	chr10:1550339-1584021(probes 949185:949215)          	chr10:1578978-1584021(probes 949215:949215)          	chr10:1578978-1584021(probes 949215:949215)          	0.17828	     0.17828	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 20	10p14   	chr10:11476552-11490367(probes 956686:956698)      	chr10:11477690-11490367(probes 956687:956698)      	chr10:11476552-11490367(probes 956686:956698)      	0.0075554	   0.0075554	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 21	10p13   	chr10:12619611-12624214(probes 957366:957377)      	chr10:12621793-12624214(probes 957372:957377)      	chr10:12619466-12639699(probes 957365:957393)      	3.5991e-07	  3.5991e-07	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 22	10p13   	chr10:16837040-16851030(probes 960855:960865)      	chr10:16842158-16851030(probes 960858:960865)      	chr10:16842158-16851030(probes 960858:960865)      	0.095155	    0.095155	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 23	10p11.23	chr10:30130233-30142968(probes 969617:969627)      	chr10:30130233-30142968(probes 969617:969627)      	chr10:30130233-30142968(probes 969617:969627)      	0.00069677	  0.00069677	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 24	10q11.21	chr10:44697479-44739338(probes 976180:976198)      	chr10:44697846-44739338(probes 976181:976198)      	chr10:44688039-44739338(probes 976171:976198)      	0.0013393	   0.0013393	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	
Broad_focal_080606	Deletion Peak 25	10q11.23	chr10:52980195-52984601(probes 979134:979157)      	chr10:52980237-52984601(probes 979135:979157)      	chr10:52980195-52984601(probes 979134:979157)      	0.005018	    0.005018	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 26	10q23.1 	chr10:83799383-83816617(probes 997921:997936)      	chr10:83799383-83815458(probes 997921:997932)      	chr10:83794071-83830521(probes 997919:997953)      	1.305e-09	   1.305e-09	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 27	10q23.2 	chr10:89347624-89376421(probes 1001511:1001523)    	chr10:89347624-89376421(probes 1001511:1001523)    	chr10:89308315-90870436(probes 1001480:1002746)    	1.381e-12	   2.698e-07	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 28	10q23.31	chr10:89569695-89618902(probes 1001667:1001702)    	chr10:89592240-89605116(probes 1001679:1001686)    	chr10:89308315-90870436(probes 1001480:1002746)    	1.3444e-17	  1.3444e-17	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	2	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 29	10q23.31	chr10:89879859-90051809(probes 1002042:1002163)    	chr10:89972939-89987139(probes 1002099:1002109)    	chr10:89308315-90870436(probes 1001480:1002746)    	5.7984e-14	  1.8062e-07	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	2	2	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 30	10q23.31	chr10:90338800-90351815(probes 1002299:1002310)    	chr10:90338800-90347138(probes 1002299:1002309)    	chr10:89308315-90870436(probes 1001480:1002746)    	4.7215e-07	    0.016448	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 31	10q26.3 	chr10:132456311-132472645(probes 1030636:1030662)	chr10:132456311-132460300(probes 1030636:1030641)	chr10:132456311-132460300(probes 1030636:1030641)	0.13655	     0.13655	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 32	12q14.1 	chr12:58606033-58959731(probes 1145356:1145558)    	chr12:58864926-58904038(probes 1145507:1145530)    	chr12:58864926-58904038(probes 1145507:1145530)    	0.16136	     0.16136	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 33	12q14.2 	chr12:61909457-62136835(probes 1147382:1147462)    	chr12:61910739-61930876(probes 1147383:1147396)    	chr12:61910739-61930876(probes 1147383:1147396)    	0.24772	     0.24772	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 34	12q21.33	chr12:90159490-90173148(probes 1164350:1164361)    	chr12:90162851-90172914(probes 1164351:1164360)    	chr12:90159490-90172914(probes 1164350:1164360)    	0.030263	    0.030263	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 35	12q24.32	chr12:127187729-127210018(probes 1188269:1188286)	chr12:127187729-127207331(probes 1188269:1188285)	chr12:127187729-127207331(probes 1188269:1188285)	0.20392	     0.20392	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 36	13q14.3 	chr13:49304288-49343738(probes 1212535:1212552)    	chr13:49304288-49343738(probes 1212535:1212552)    	chr13:49304288-49343738(probes 1212535:1212552)    	0.019815	    0.019815	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 37	13q21.2 	chr13:58641010-59774761(probes 1217525:1218291)    	chr13:58707182-58713247(probes 1217587:1217598)    	chr13:58707182-58713247(probes 1217587:1217598)    	0.090317	     0.20458	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 38	13q21.32	chr13:67006295-67020238(probes 1222263:1222273)    	chr13:67016103-67020238(probes 1222272:1222273)    	chr13:67006295-67020238(probes 1222263:1222273)    	0.0015974	   0.0015974	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 39	17q11.2 	chr17:26425648-26673293(probes 1403598:1403699)    	chr17:26533127-26579279(probes 1403642:1403661)    	chr17:26533127-26579279(probes 1403642:1403661)    	0.15486	     0.15486	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 40	17q22   	chr17:53041012-53059654(probes 1417955:1417966)    	chr17:53041012-53057255(probes 1417955:1417965)    	chr17:53041012-53059654(probes 1417955:1417966)    	0.0088563	   0.0088563	focal	0: t>-0.1926; 1: 0.1926>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 1 - log2 ratios	1p36.12 	chr1:20907696-20932942(probes 9453:9470)            	chr1:20907696-20924301(probes 9453:9468)            	chr1:20907696-20924301(probes 9453:9468)            	0.15893	     0.15893	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2232	0	0.92777	0.943	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 2 - log2 ratios	1q22    	chr1:154500104-154771299(probes 72937:73054)      	chr1:154726324-154747454(probes 73029:73039)      	chr1:154726324-154747454(probes 73029:73039)      	0.07964	     0.07964	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5025	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3381	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9888	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 3 - log2 ratios	1q32.1  	chr1:202299662-203007854(probes 103166:103742)    	chr1:202413810-202818452(probes 103263:103593)    	chr1:201327874-203776864(probes 102600:104231)    	3.7759e-14	  3.7759e-14	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0.7758	0	0	0	0	0	0	0	0	0	0	0	0	1.5002	0	0	0	1.5213	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5126	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4721	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4322	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4417	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4629	0	0	0	0	0	1.4848	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0267	0	1.4949	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 4 - log2 ratios	1q44    	chr1:241044757-242809557(probes 129619:130628)    	chr1:241500278-242803774(probes 129722:130625)    	chr1:241500278-242803774(probes 129722:130625)    	0.22556	     0.22556	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	1.5101	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4975	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 5 - log2 ratios	3q26.33 	chr3:182207550-183214620(probes 377574:378120)    	chr3:182354608-182774112(probes 377643:377870)    	chr3:182207550-183214620(probes 377574:378120)    	0.054966	    0.054966	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4942	0	0	0	1.0675	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.498	0	0	0	0	
Broad_focal_080606	Amplification Peak 6 - log2 ratios	4q12    	chr4:54506016-54554815(probes 417572:417592)        	chr4:54516108-54540980(probes 417573:417583)        	chr4:48783398-58279689(probes 416263:420171)        	2.5816e-37	  2.5815e-37	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0.8506	0	0	1.4743	0	1.4931	0	0	0.66277	0	0	1.5192	0	1.4489	0	0	0	0	1.4205	0	0	1.2811	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1761	0	0	0	0	0	0	0	0	0	1.4679	0	0	0	0	1.5306	0.7278	1.4114	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4458	0	1.4714	0	0	0	0.8677	0	0	0	0	0	0	0	0	0	0	0	1.4922	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4525	1.5061	1.4638	0	0	0	0	0	0	0	0	0	0	0.6519	0	0	0	0	0	0	0	1.5213	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.498	0	0	1.4765	0	
Broad_focal_080606	Amplification Peak 7 - log2 ratios	4q22.1  	chr4:92134425-92137111(probes 439380:439393)        	chr4:92134465-92137111(probes 439381:439393)        	chr4:92134425-92137111(probes 439380:439393)        	0.010929	    0.010929	focal	Actual Log2 Ratio Given	0	0	0	1.0967	0	0	0	0	0	1.4743	0	0	0	0	0	1.0323	0	0	0	0	0	0	0	0	1.0645	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 8 - log2 ratios	4q26    	chr4:119259774-119849393(probes 454788:455021)    	chr4:119633880-119685960(probes 454958:454975)    	chr4:119633880-119685960(probes 454958:454975)    	0.21641	     0.21641	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	1.5101	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5081	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 9 - log2 ratios	7p22.1  	chr7:4869523-5274229(probes 705410:705589)            	chr7:4874896-4913130(probes 705415:705436)            	chr7:4869523-5274229(probes 705410:705589)            	0.052384	    0.052384	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.49453	0	0	0	0	0	0	0	0	0	0.95117	0.48716	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4858	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7491	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 10 - log2 ratios	7p15.1  	chr7:30434582-30749287(probes 722018:722196)        	chr7:30444035-30505891(probes 722021:722052)        	chr7:30444035-30505891(probes 722021:722052)        	0.086013	    0.086013	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8915	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4813	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4191	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 11 - log2 ratios	7p14.3  	chr7:32968127-33000366(probes 723764:723775)        	chr7:32968945-32994943(probes 723765:723774)        	chr7:31697302-33869759(probes 722894:724347)        	5.3896e-10	  5.3896e-10	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	1.1502	1.5594	0	1.3754	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2198	0	0	0	0	0	0	0.9593	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.136	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4191	0	0	0	0	1.4817	0	1.498	0	0	0	0	
Broad_focal_080606	Amplification Peak 12 - log2 ratios	7p12.1  	chr7:52608201-52776121(probes 736812:736900)        	chr7:52639081-52762956(probes 736844:736888)        	chr7:52580040-62270579(probes 736781:739808)        	1.2709e-07	   0.0011961	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5971	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7536	0	0	0	0	0	0	0	-1.056	0	0	0	1.4813	0	1.4691	0	0	0	0	0	0	0	0	0	0	0	0	1.4622	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5306	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4191	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 13 - log2 ratios	7p11.2  	chr7:54921812-54988715(probes 738402:738445)        	chr7:54931889-54988715(probes 738412:738445)        	chr7:52580040-62270579(probes 736781:739808)        	1.0737e-186	 1.0737e-186	focal	Actual Log2 Ratio Given	1.4927	0	1.4918	1.4761	0	1.4746	1.5101	1.4644	1.5594	0	1.4889	1.4931	0	1.4604	0	0	0	1.5192	0	0	0	0	0	1.5002	1.4205	0	0	1.5213	1.4911	0	0	1.4738	1.5937	0	0	1.4693	1.5029	1.5108	1.525	1.5108	1.5049	0	0	0	1.4339	1.5005	1.5025	0	1.4851	0	0	0	0	1.4903	1.4765	1.4721	0	1.176	0	0	1.4739	0	1.4691	0	0	0	0	1.5109	1.4778	1.4851	1.5469	1.1917	1.5245	0	1.487	1.4622	0	0	0	1.4583	0	1.4057	1.4736	0	0	0	1.4941	0	0	0	0	0	1.4785	1.4946	1.4829	0	0	0	0	0	0	0	1.5514	0	0	0	0	0	0	1.4756	1.5272	1.5057	1.5073	0	0	1.5149	0	0	1.4958	0	0	0	0	1.4629	1.4375	0	0	1.502	1.5403	1.4848	0	1.4975	1.4623	0	0	0	1.5524	0	0	1.5478	0	0	1.4552	0	1.0302	0	1.5243	0	0	1.4795	0	0	0	0	0	0	0	1.0541	0	0	0	1.4888	1.4817	0	1.4964	0	1.5005	0	0	
Broad_focal_080606	Amplification Peak 14 - log2 ratios	7p11.2  	chr7:55605095-55837594(probes 739027:739121)        	chr7:55747204-55791074(probes 739101:739105)        	chr7:52580040-62270579(probes 736781:739808)        	4.7244e-53	    0.028018	focal	Actual Log2 Ratio Given	0	0	1.4918	1.4761	0	0	0	1.4644	1.5594	0	1.4961	0	0	1.4604	0	0	0	1.5192	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4738	0	0	0	0	1.5029	0	0	0	0	0	0	0	0	0	1.5025	0	0.8892	0	0	0	0	1.4903	0	0	0	0	0	0	0	0	1.2094	0	0	0	0	1.5109	0	0	1.2017	0	0	0	0	1.4622	0	0	0	0	0	0	0	0	0	0	1.4935	0	0	0	0	0	0	1.4444	1.4829	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8044	0	1.5057	1.4993	0	0	0	0	0	0	0	0	0	0	1.4629	0	0	0	1.502	0	1.4848	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0541	0	0	0	0	1.4817	0	1.4964	0	0	0	0	
Broad_focal_080606	Amplification Peak 15 - log2 ratios	7p11.2  	chr7:56527007-56744358(probes 739405:739465)        	chr7:56537744-56551323(probes 739411:739411)        	chr7:52580040-62270579(probes 736781:739808)        	3.928e-14	  9.7809e-05	focal	Actual Log2 Ratio Given	1.4927	0	0	0	0	0	0	0	0	0	0	0	0	1.4604	0	0	0	1.5192	0	0	0	0	0	0	0	0	0	0	0	0	0	0.68685	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4903	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4622	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4993	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.502	0	1.4848	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0034	0	0	0	0	0	0	1.498	0	0	0	0	
Broad_focal_080606	Amplification Peak 16 - log2 ratios	7q21.11 	chr7:78417226-78735106(probes 746560:746757)        	chr7:78429941-78477650(probes 746567:746604)        	chr7:78429941-78694006(probes 746567:746717)        	0.089254	    0.089254	focal	Actual Log2 Ratio Given	0.8205	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4638	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.498	0	0	0	0	
Broad_focal_080606	Amplification Peak 17 - log2 ratios	7q21.13 	chr7:86786164-90531752(probes 751812:752892)        	chr7:90100022-90295978(probes 752609:752718)        	chr7:90100022-90531752(probes 752609:752892)        	0.053032	     0.15366	focal	Actual Log2 Ratio Given	0.8448	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.95144	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4858	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8693	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 18 - log2 ratios	7q21.2  	chr7:91681231-92433690(probes 753596:754177)        	chr7:91906552-92367835(probes 753703:754139)        	chr7:91581087-92838367(probes 753561:754370)        	0.00041973	  0.00041973	focal	Actual Log2 Ratio Given	0.8847	0	0	0	0	0	0	0	0	1.4743	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.88834	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8356	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6529	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.498	0	0	0	0	
Broad_focal_080606	Amplification Peak 19 - log2 ratios	7q31.2  	chr7:116101460-116366278(probes 766578:766844)    	chr7:116101460-116296083(probes 766578:766812)    	chr7:116066994-117302075(probes 766555:767366)    	6.0276e-08	  6.0276e-08	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4813	0	0	0	1.5212	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9895	0	0	0	1.4714	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4638	0	0	0	0	0	0	0	0	0	0	1.4797	0	0	0	1.6002	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 20 - log2 ratios	7q31.31 	chr7:120841695-120868549(probes 769331:769370)    	chr7:120848765-120856017(probes 769334:769347)    	chr7:120841695-120868549(probes 769331:769370)    	0.010038	    0.090943	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9895	0	0	0	1.4664	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9883	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.312	0	0	
Broad_focal_080606	Amplification Peak 21 - log2 ratios	7q33    	chr7:133005453-133321358(probes 776667:776866)    	chr7:133106065-133311938(probes 776723:776861)    	chr7:133106065-133123644(probes 776723:776736)    	0.050608	    0.050608	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2481	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4638	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 22 - log2 ratios	7q34    	chr7:140121090-140134724(probes 781138:781160)    	chr7:140125428-140129128(probes 781145:781149)    	chr7:140125428-140129128(probes 781145:781149)    	0.15176	     0.15176	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	1.5101	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9555	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7677	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 23 - log2 ratios	7q34    	chr7:141767721-142213197(probes 782212:782385)    	chr7:141882384-142023271(probes 782300:782329)    	chr7:141767721-142213197(probes 782212:782385)    	0.012073	    0.012073	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6797	0	0	0	0	0	0	0	0	0	0	0.8222	0	0	0	0.7761	0	0	0	0	0	0	0.36538	0	0	0	0.4627	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4797	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 24 - log2 ratios	9q33.2  	chr9:123909128-123922105(probes 940386:940397)    	chr9:123909128-123918518(probes 940386:940392)    	chr9:123909128-123922105(probes 940386:940397)    	0.094516	    0.094516	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6886	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0223	0	1.0713	0.9637	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 25 - log2 ratios	10p14   	chr10:11469998-11489797(probes 956681:956697)      	chr10:11476552-11489797(probes 956686:956697)      	chr10:11476552-11489797(probes 956686:956697)      	0.14768	     0.14768	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0406	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.60566	0	0	0	0.77343	0	1.1354	0.7582	-1.0527	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.513	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.3824	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 26 - log2 ratios	11p15.5 	chr11:2746514-2782638(probes 1032377:1032389)        	chr11:2746514-2782638(probes 1032377:1032389)        	chr11:2746514-2782638(probes 1032377:1032389)        	0.011515	    0.011515	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.85739	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3823	1.2589	1.5351	0.4433	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 27 - log2 ratios	11p13   	chr11:32387436-33587367(probes 1052180:1052882)    	chr11:32456077-32468027(probes 1052275:1052281)    	chr11:32456077-32468027(probes 1052275:1052281)    	0.21641	     0.21641	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4813	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5279	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 28 - log2 ratios	11q23.3 	chr11:117777604-122947921(probes 1100002:1103653)	chr11:119162161-119178931(probes 1100831:1100841)	chr11:119162161-119178931(probes 1100831:1100841)	0.1712	      0.1712	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5256	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5351	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 29 - log2 ratios	12p13.32	chr12:4036724-4303899(probes 1114165:1114419)        	chr12:4266498-4278396(probes 1114363:1114395)        	chr12:4036724-4303899(probes 1114165:1114419)        	0.012073	    0.012073	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	1.3916	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5002	0	0.48931	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2062	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 30 - log2 ratios	12q13.11	chr12:44710119-45060211(probes 1137812:1138003)    	chr12:44900991-44919764(probes 1137958:1137967)    	chr12:44900991-44919764(probes 1137958:1137967)    	0.04014	     0.04014	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	1.5101	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3038	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5514	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 31 - log2 ratios	12q13.13	chr12:48743573-48746517(probes 1139968:1139986)    	chr12:48743573-48745579(probes 1139968:1139983)    	chr12:48743573-48746517(probes 1139968:1139986)    	0.0085643	    0.017641	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	1.4743	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.55471	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3982	0	0	0	0	0	1.124	0	0	0	1.3483	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 32 - log2 ratios	12q13.2 	chr12:53848881-53948272(probes 1142704:1142766)    	chr12:53870965-53918557(probes 1142720:1142743)    	chr12:53848881-53948272(probes 1142704:1142766)    	0.0051294	     0.14258	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	1.2648	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.57491	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3982	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4721	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5061	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 33 - log2 ratios	12q13.3 	chr12:55964838-56090302(probes 1143704:1143749)    	chr12:56025902-56052658(probes 1143727:1143736)    	chr12:55909438-58278467(probes 1143691:1145122)    	1.4935e-12	    0.022393	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	1.5101	0	0	0	0	1.4931	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0709	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3982	0	0	0	0	0	0	0	0	0	0	0	0.89437	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4721	0	0	1.4722	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.74238	0	0	1.4493	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5061	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5005	0	0	
Broad_focal_080606	Amplification Peak 34 - log2 ratios	12q13.3 	chr12:56149298-56211967(probes 1143788:1143804)    	chr12:56194980-56204268(probes 1143803:1143803)    	chr12:55909438-58278467(probes 1143691:1145122)    	1.6314e-29	  7.8569e-05	focal	Actual Log2 Ratio Given	0	0	0	0	0	1.4746	1.5101	0	0	1.4743	0	1.4931	0	0	0	0	0	0	0	0	0	0	0	0	0	0.62011	0	0	1.4911	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3982	0	0	0	0	0	0	0	0	0	0	0	0.89437	0	0	0	1.1421	1.5047	0	0	0	1.4942	0	0	0	0	0	0	0	0	0	0	0	1.4721	0	1.4583	1.4722	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.74238	0	0	1.4493	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5061	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5524	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.498	0	1.5005	0	0	
Broad_focal_080606	Amplification Peak 35 - log2 ratios	12q14.1 	chr12:56370612-56480203(probes 1143884:1143894)    	chr12:56370612-56459195(probes 1143884:1143887)    	chr12:55909438-58278467(probes 1143691:1145122)    	7.6752e-45	  7.6751e-45	focal	Actual Log2 Ratio Given	0	0	0	0	0	1.4746	1.4494	0	0	1.4743	0	1.4931	0	0	0	0	0	0	0	0	0	0	0	1.5002	0	1.4439	0	0	1.4911	0	1.4452	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3982	0	0	0	0	0	0	0	0	0	0	0	0.89437	0	0	0	0	1.5047	0	0	0	1.4942	0	0	0	0	0	0	0	0	0	0	0	1.4721	0	1.4583	1.4722	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4858	0	0	0	0	0	0	0	0	1.4922	0.74238	0	0	1.2968	0	0	1.5272	0	0	0	0	0	0	0	0	0	0	1.5061	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5524	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4973	0	1.4191	0	0	0	0	0	0	1.498	0	1.5005	0	0	
Broad_focal_080606	Amplification Peak 36 - log2 ratios	12q14.1 	chr12:56860696-56968931(probes 1144119:1144182)    	chr12:56916607-56963222(probes 1144151:1144178)    	chr12:55909438-58278467(probes 1143691:1145122)    	9.4441e-10	    0.071904	focal	Actual Log2 Ratio Given	0	0	0	0	0	1.4746	0.8896	0	0	0	0	-1.2531	0	0	0	0	0	0	0	0	0	0	0	1.5002	0	-0.76439	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3982	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4721	0	0	1.4722	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5061	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4191	0	0	0	0	0	0	0	0	1.5005	0	0	
Broad_focal_080606	Amplification Peak 37 - log2 ratios	12q14.1 	chr12:57523880-57717551(probes 1144650:1144784)    	chr12:57567096-57596003(probes 1144675:1144693)    	chr12:55909438-58278467(probes 1143691:1145122)    	1.3491e-10	  0.00064562	focal	Actual Log2 Ratio Given	0	0	0	0	0	1.4746	0	0	0	1.4743	0	-1.2531	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3988	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4721	0	0	1.4722	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5061	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5524	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4191	0	0	0	0	0	0	0	0	1.5005	0	0	
Broad_focal_080606	Amplification Peak 38 - log2 ratios	12q14.1 	chr12:58473933-58614293(probes 1145271:1145355)    	chr12:58521416-58614293(probes 1145298:1145355)    	chr12:58473933-58614293(probes 1145271:1145355)    	0.0081593	     0.17503	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	-1.2531	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.79379	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3988	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4721	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5061	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5524	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 39 - log2 ratios	12q14.1 	chr12:59550576-59651211(probes 1145884:1145924)    	chr12:59565032-59601323(probes 1145891:1145904)    	chr12:58885479-60263258(probes 1145516:1146332)    	3.2808e-07	  3.7959e-05	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	1.5101	0	0	0	0	1.4931	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.79379	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3988	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4721	0	0	1.4722	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5061	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4191	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 40 - log2 ratios	12q14.3 	chr12:59936529-60263258(probes 1146115:1146332)    	chr12:60009263-69338567(probes 1146161:1152055)    	chr12:58885479-60263258(probes 1145516:1146332)    	0.00033834	     0.17503	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	1.4644	0	0	0	-1.2637	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.88329	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4721	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4191	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 41 - log2 ratios	12q14.1 	chr12:60675183-60795594(probes 1146571:1146656)    	chr12:60758839-60795594(probes 1146639:1146656)    	chr12:60428920-61169736(probes 1146420:1146855)    	0.0014081	    0.058278	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	-1.2594	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.82939	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3988	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4721	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4493	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5061	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0478	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 42 - log2 ratios	12q14.2 	chr12:61359752-61878844(probes 1146975:1147354)    	chr12:61392976-61464296(probes 1146991:1147008)    	chr12:61316121-61878844(probes 1146943:1147354)    	0.0087368	     0.22556	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	-1.2594	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.82939	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3988	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4721	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4493	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5524	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 43 - log2 ratios	12q14.2 	chr12:62136837-62437091(probes 1147464:1147502)    	chr12:62162567-62437091(probes 1147476:1147502)    	chr12:61971711-63876602(probes 1147435:1148297)    	0.00028124	     0.15366	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	1.4743	0	-1.2594	0	0	0	0	0	0	0	0	0	0	0	0	0	0.25771	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.4595	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4721	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4493	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4191	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 44 - log2 ratios	12q14.2 	chr12:62822393-62943409(probes 1147702:1147764)    	chr12:62851658-62882992(probes 1147721:1147732)    	chr12:61971711-63876602(probes 1147435:1148297)    	3.1753e-07	  3.4281e-05	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	1.4931	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.76409	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3977	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4721	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4493	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5061	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5524	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4191	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 45 - log2 ratios	12q14.3 	chr12:64156569-64254522(probes 1148439:1148496)    	chr12:64174101-64196483(probes 1148449:1148456)    	chr12:64129882-64370496(probes 1148420:1148569)    	9.0785e-05	   0.0024287	focal	Actual Log2 Ratio Given	0	0	0	0	0	1.4746	0	0	0	0	0	-1.2637	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.84379	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4721	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5061	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5524	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0527	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 46 - log2 ratios	12q14.3 	chr12:64490341-64619705(probes 1148657:1148712)    	chr12:64490341-64527638(probes 1148657:1148677)    	chr12:64490341-64619705(probes 1148657:1148712)    	0.00074896	    0.018028	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	1.4644	0	0	0	-1.2637	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.88279	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4721	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5272	0	0	0	0	0	0	0	0	0	0	1.5061	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 47 - log2 ratios	12q14.3 	chr12:64868005-65540437(probes 1148867:1149353)    	chr12:64940780-64967715(probes 1148918:1148950)    	chr12:64868005-66309026(probes 1148867:1149960)    	0.0011693	     0.21641	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	1.4644	0	0	0	-1.2637	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.88329	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4721	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5524	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4191	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 48 - log2 ratios	12q14.3 	chr12:65836703-66040939(probes 1149611:1149741)    	chr12:65877313-65984440(probes 1149636:1149705)    	chr12:64868005-66309026(probes 1148867:1149960)    	2.0259e-08	   8.258e-07	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	1.4644	0	0	0	-1.3046	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.88329	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4995	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4721	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5061	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5524	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4191	0	0	0	0	0	0	0	1.4726	0	0	0	
Broad_focal_080606	Amplification Peak 49 - log2 ratios	12q15   	chr12:66668518-66764237(probes 1150209:1150289)    	chr12:66679948-66717473(probes 1150218:1150252)    	chr12:66354860-66856789(probes 1149993:1150365)    	5.1675e-05	   0.0014081	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	-1.273	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4995	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4721	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4493	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5061	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4191	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 50 - log2 ratios	12q15   	chr12:67068763-67171984(probes 1150591:1150652)    	chr12:67082175-67085810(probes 1150606:1150607)    	chr12:67030179-69844632(probes 1150542:1152400)    	2.6582e-07	  0.00029785	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	1.4743	0	-1.2012	0	0	0	0	0	0	0	0	0	0	0	0	0	0.51391	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4995	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4721	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4957	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5061	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4191	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 51 - log2 ratios	12q15   	chr12:67469546-67551864(probes 1150808:1150887)    	chr12:67501958-67546694(probes 1150840:1150881)    	chr12:67030179-69844632(probes 1150542:1152400)    	1.4638e-32	    2.32e-30	focal	Actual Log2 Ratio Given	0	0	0	0	0	1.4746	1.5101	1.4644	1.5594	0	0	1.4931	0	0	0	0	0	0	0	0	0	0	0	0	1.4011	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4995	1.4813	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.471	0	0	1.4722	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4957	0	0	0	0	0	1.5514	0	0	0	0	1.4493	0	0	1.5272	0	0	0	0	0	0	0	0	0	0	1.5061	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5524	0	0	0	0	0	0	0	0	0	0	0	1.4343	0	0	0	0	0	0	0	0	1.3618	0	0	0	0	0	0	0	1.4726	0	0	0	
Broad_focal_080606	Amplification Peak 52 - log2 ratios	12q15   	chr12:67941876-68024145(probes 1151150:1151198)    	chr12:67959854-67978432(probes 1151163:1151167)    	chr12:67030179-69844632(probes 1150542:1152400)    	9.3207e-15	    0.097895	focal	Actual Log2 Ratio Given	0	0	0	0	0	1.4746	0	1.4644	1.5594	0	0	1.4931	0	0	0	0	0	0	0	0	0	0	0	0	0	0.71791	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4995	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.471	0	0	1.4722	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5272	0	0	0	0	0	0	0	0	0	0	1.5061	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4726	0	0	0	
Broad_focal_080606	Amplification Peak 53 - log2 ratios	12q15   	chr12:68949270-69057858(probes 1151815:1151865)    	chr12:68978087-68990205(probes 1151835:1151837)    	chr12:67030179-69844632(probes 1150542:1152400)    	1.2429e-06	    0.039839	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	1.4644	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.49501	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.471	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5272	0	0	0	0	0	0	0	0	0	0	1.5061	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5524	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.81783	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 54 - log2 ratios	12q15   	chr12:69080454-69392927(probes 1151886:1152096)    	chr12:69289133-69338567(probes 1152015:1152055)    	chr12:67030179-69844632(probes 1150542:1152400)    	0.00053218	     0.17503	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.471	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5272	0	0	0	0	0	0	0	0	0	0	1.5061	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5524	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 55 - log2 ratios	12q15   	chr12:69612281-69745233(probes 1152260:1152360)    	chr12:69697829-69722087(probes 1152334:1152345)    	chr12:67030179-69844632(probes 1150542:1152400)    	0.00035865	   0.0085643	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.49771	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.471	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5061	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4191	0	0	0	0	0	0	0	1.4726	0	0	0	
Broad_focal_080606	Amplification Peak 56 - log2 ratios	12q24.31	chr12:123346566-123641612(probes 1185483:1185495)	chr12:123356136-123641612(probes 1185490:1185495)	chr12:123346566-123641612(probes 1185483:1185495)	0.0087368	   0.0087368	focal	Actual Log2 Ratio Given	0	0	0.87112	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.99591	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8329	1.1834	0.9885	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 57 - log2 ratios	13q14.2 	chr13:47786516-47797292(probes 1211647:1211658)    	chr13:47796161-47797252(probes 1211648:1211657)    	chr13:47796161-47797252(probes 1211648:1211657)    	0.1208	      0.1208	focal	Actual Log2 Ratio Given	0	0	0	1.469	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1699	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.5128	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.91557	0	0	0	0	0	0	0	0	-0.85469	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Amplification Peak 58 - log2 ratios	19p13.3 	chr19:1308844-2581324(probes 1478985:1479316)        	chr19:1374673-1427814(probes 1479009:1479022)        	chr19:1308844-2581324(probes 1478985:1479316)        	0.010929	    0.010929	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1587	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.58763	0	0	0	0	0.55242	0	0	0	0.7139	0.97677	0.6804	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 1 - log2 ratios	1p36.23 	chr1:8051998-9316594(probes 2860:3516)                	chr1:8109888-8140063(probes 2893:2908)                	chr1:8109888-8140063(probes 2893:2908)                	0.059017	    0.059017	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4971	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0814	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4856	
Broad_focal_080606	Deletion Peak 2 - log2 ratios	1p33    	chr1:51018466-51238240(probes 25375:25465)          	chr1:51051237-51226466(probes 25395:25462)          	chr1:50852566-51261437(probes 25322:25477)          	2.5222e-06	  2.5222e-06	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	-1.5212	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5078	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4812	0	-1.5362	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.6811	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5183	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 3 - log2 ratios	3q13.31 	chr3:117363420-117500384(probes 340110:340201)    	chr3:117379569-117389782(probes 340121:340132)    	chr3:117379569-117389782(probes 340121:340132)    	0.1934	      0.1934	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9874	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.47285	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9966	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4574	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 4 - log2 ratios	4q28.2  	chr4:130376070-130388030(probes 460606:460617)    	chr4:130376070-130388030(probes 460606:460617)    	chr4:130376070-130388030(probes 460606:460617)    	0.15231	     0.15231	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.74969	0	-0.87664	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.2442	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.75693	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 5 - log2 ratios	8p23.2  	chr8:3571109-3575595(probes 793812:793827)            	chr8:3571679-3575595(probes 793816:793827)            	chr8:3570501-3576688(probes 793808:793831)            	3.3337e-06	  3.3337e-06	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.96614	0	-0.5596	0	0	0	0	-0.70291	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.8327	0	0	0	0	0	0	0	0	0	0	0	-1.5307	-1.0151	0	0	-0.8529	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.60199	0	0	-1.052	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 6 - log2 ratios	9p23    	chr9:10361074-10505243(probes 883830:883849)        	chr9:10374352-10383015(probes 883839:883847)        	chr9:10361074-10505243(probes 883830:883849)        	0.015407	    0.015407	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5795	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.2019	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.1541	0	0	0	0	0	0	-0.66713	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 7 - log2 ratios	9p22.1  	chr9:19719805-19995047(probes 890654:890878)        	chr9:19736627-19743996(probes 890671:890680)        	chr9:19473043-29283084(probes 890449:897053)        	6.3054e-18	  6.5894e-05	focal	Actual Log2 Ratio Given	0	0	-1.5082	-1.5239	0	0	0	0	0	0	-1.5039	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4971	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5264	0	0	0	0	0	0	0	0	0	-1.5215	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4943	0	0	-1.1756	-1.4851	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9503	0	0	0	0	0	0	0	-1.5448	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5183	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 8 - log2 ratios	9p21.3  	chr9:20659941-20935206(probes 891336:891551)        	chr9:20858288-20896682(probes 891490:891519)        	chr9:19473043-29283084(probes 890449:897053)        	1.3196e-40	    0.015869	focal	Actual Log2 Ratio Given	0	0	-1.5082	-1.5239	0	0	0	0	0	0	-1.5039	0	0	0	0	0	0	-1.4808	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4971	-1.4892	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5309	0	0	0	-1.3638	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5264	0	0	0	0	0	-1.5219	0	0	0	-1.5215	-1.5054	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.3453	0	0	-1.1756	-1.4851	0	0	0	0	0	0	0	0	0	0	0	-1.498	0	-1.5152	0	0	0	0	-1.0132	0	0	0	0	0	0	0	-1.5448	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5112	-1.5183	0	0	0	0	0	-1.4856	
Broad_focal_080606	Deletion Peak 9 - log2 ratios	9p21.3  	chr9:21464576-21591241(probes 891922:892023)        	chr9:21533597-21569121(probes 891993:892006)        	chr9:19473043-29283084(probes 890449:897053)        	2.5203e-112	      0.0523	focal	Actual Log2 Ratio Given	-1.5073	-1.5468	-1.5082	-1.5239	-1.0006	0	0	0	0	0	-1.5039	0	0	0	0	0	0	-1.4808	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.3334	-1.4971	-1.4892	-1.475	-1.1776	0	-1.4874	0	0	0	0	-0.86661	0	0	0	-1.1882	0	0	0	0	0	0	0	0	0	0	0	-1.5309	0	-1.3367	0	-1.3625	-1.4324	0	0	0	0	0	-1.5155	0	0	0	0	0	0	0	0	-1.5264	0	0	-1.5542	-1.5059	-1.5286	-1.5028	0	0	0	-1.5215	-1.5054	0	-1.518	0	0	0	-0.5037	0	0	0	0	0	0	0	0	0	0	0	-1.2587	-1.4927	0	-1.1756	-1.4851	0	0	-1.2607	0	-1.535	0	0	0	0	0	0	-1.498	0	-1.5152	0	0	-1.5377	-1.3623	-1.0132	0	0	-1.3998	0	-1.4522	0	0	-1.5448	0	0	0	-1.4757	0	0	-1.2472	0	0	-0.9575	-1.5781	0	0	0	0	0	-1.4727	0	-1.5112	-1.5183	0	0	0	0	0	-1.4856	
Broad_focal_080606	Deletion Peak 10 - log2 ratios	9p21.3  	chr9:21981924-21989614(probes 892268:892271)        	chr9:21981924-21989239(probes 892268:892270)        	chr9:19473043-29283084(probes 890449:897053)        	1.1621e-234	 1.1621e-234	focal	Actual Log2 Ratio Given	-1.5073	-1.5468	-1.5082	-1.5239	-1.0006	0	0	-1.5356	0	0	-1.5039	0	-1.5212	0	-1.0573	0	0	-1.4808	0	-1.5511	0	0	0	0	-1.5795	0	0	-1.3041	-1.5089	0	0	-1.5262	-1.091	0	0	-1.3334	-1.4971	-1.4892	-1.475	-1.1776	-1.4951	-1.4835	0	0	-1.2933	0	-0.86661	0	-1.5149	0	-1.1882	-1.51	0	-1.5097	0	-1.5279	0	0	0	-1.5005	0	0	-1.5309	0	-1.3367	0	-1.3625	-1.4324	0	0	0	0	0	-1.5155	-1.513	-1.5378	-1.1126	0	-1.1892	0	0	0	-1.5264	0	0	-1.5542	-1.257	-1.5286	-1.5028	0	0	-1.4721	-1.5215	-1.5048	0	-1.518	0	0	0	-0.5037	0	0	-1.4486	0	0	0	0	0	-0.7829	0	0	-1.2587	-1.4927	-1.1524	-1.1756	-1.4851	0	0	-1.2034	-1.5253	-1.535	0	-1.5362	-1.5371	-1.5625	0	-0.96423	-1.498	0	-1.5152	0	-1.5025	-1.5377	-1.5203	-1.0132	0	0	-1.3998	-1.5861	-1.4522	0	0	-1.5448	0	-0.97	0	-1.4757	-0.8531	0	-1.5205	0	0	-0.9575	-1.5781	0	0	0	0	-1.4574	-1.4727	-1.4771	-1.5112	-1.5183	-1.1581	0	0	0	-1.5235	-1.4856	
Broad_focal_080606	Deletion Peak 11 - log2 ratios	9p21.3  	chr9:22225347-22398132(probes 892457:892567)        	chr9:22318195-22370210(probes 892510:892547)        	chr9:19473043-29283084(probes 890449:897053)        	4.9866e-123	     0.13591	focal	Actual Log2 Ratio Given	0	-1.5468	0	-1.5239	-1.0006	0	0	0	0	0	0	0	-1.5212	0	0	-1.0968	0	-1.4808	0	0	0	0	0	0	-1.5795	0	0	0	0	0	0	-1.5262	0	0	0	-1.3334	-1.4971	-1.4892	-1.475	-1.1776	-1.4951	-1.4835	0	0	0	0	-0.86661	0	-1.5149	0	0	-1.51	0	-1.5097	0	-1.5279	0	0	0	0	0	0	-1.5309	0	0	0	-1.3956	-1.4891	0	0	0	0	0	-1.5155	-1.513	-1.5378	0	0	-0.6578	0	0	0	-1.5264	0	0	-1.5542	-1.5059	-1.5286	0	0	0	-1.4721	0	-1.5048	0	0	0	0	0	-0.5037	0	0	-1.4486	0	0	0	0	0	-0.7829	0	0	-1.2587	-1.4927	0	0	0	0	0	-1.112	0	-1.535	0	0	0	-1.5625	0	0	-1.498	0	0	0	0	-1.5377	0	0	0	0	-1.3998	-1.5861	-1.4522	0	0	-1.5448	0	0	0	0	0	0	-1.5205	0	0	-0.9575	0	0	0	0	0	0	-1.4727	0	-1.5112	-1.5183	-1.1581	0	0	0	-1.5235	0	
Broad_focal_080606	Deletion Peak 12 - log2 ratios	9p21.3  	chr9:22455258-22533730(probes 892595:892638)        	chr9:22470924-22482888(probes 892598:892609)        	chr9:19473043-29283084(probes 890449:897053)        	3.4269e-112	  6.2791e-06	focal	Actual Log2 Ratio Given	-1.5073	0	0	-1.5239	-1.0006	0	0	0	0	0	0	0	-1.5212	0	0	-1.4268	0	-1.4808	0	0	0	0	0	0	-1.5795	0	0	0	0	0	0	-1.5262	0	0	0	-1.3334	-1.4971	-1.4892	-1.475	-1.1776	-1.4951	-1.4835	0	0	0	0	-0.46574	0	0	0	0	-1.51	0	-1.5097	0	0	0	0	0	0	0	0	-1.5309	0	0	0	-1.3956	-1.4891	0	0	0	0	0	-1.5155	0	-1.5378	0	0	-0.6578	0	0	0	-1.5264	0	0	-1.5542	-1.0811	-1.5286	0	0	0	-1.4721	0	-1.5048	0	0	0	0	0	-0.5037	0	0	-1.4486	0	0	0	0	0	-0.7829	0	0	-1.3157	-1.4927	0	0	0	0	0	0	0	-1.535	0	0	0	-1.5625	0	-1.0218	-1.498	0	0	0	0	-1.5377	0	0	0	0	-1.3998	-1.5861	-1.4522	0	0	-1.5448	0	0	0	0	0	0	-1.5205	0	0	-0.9575	0	0	0	0	0	0	-1.4727	0	-1.5112	-1.5183	-1.1581	0	0	0	-1.5235	0	
Broad_focal_080606	Deletion Peak 13 - log2 ratios	9p21.3  	chr9:23617725-23737516(probes 893255:893367)        	chr9:23659527-23735601(probes 893298:893365)        	chr9:19473043-29283084(probes 890449:897053)        	6.652e-72	  3.7737e-14	focal	Actual Log2 Ratio Given	0	0	0	-1.5239	-1.0385	0	0	0	0	0	0	0	-1.5212	0	0	-0.89902	0	-1.4808	0	0	0	0	0	0	-1.5795	0	0	0	0	0	0	0	0	0	0	-1.4353	-1.4971	-1.4892	-1.475	-1.1776	0	0	0	0	0	0	0	0	0	-1.4561	0	0	0	0	0	0	0	0	0	0	0	0	-1.5309	0	0	0	-1.4222	-1.4891	0	0	0	0	0	-1.5155	0	-1.5378	0	0	-0.6848	0	0	0	-1.5264	0	0	-1.5542	-1.5059	0	0	0	0	-1.4721	0	-1.5048	0	0	0	0	0	0	0	0	-1.4486	0	0	0	0	0	-0.8173	0	0	-1.3714	0	0	0	-1.4851	0	0	0	0	0	0	0	0	-1.5625	0	-0.88683	-1.498	0	0	0	0	0	0	0	0	0	0	-1.5861	-1.4522	-0.8751	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4727	0	-1.5112	0	0	0	0	0	-1.5235	0	
Broad_focal_080606	Deletion Peak 14 - log2 ratios	9p21.3  	chr9:24230406-24384048(probes 893672:893765)        	chr9:24236609-24288507(probes 893682:893709)        	chr9:19473043-29283084(probes 890449:897053)        	4.4823e-55	    0.058648	focal	Actual Log2 Ratio Given	0	0	0	-1.5239	-1.0385	0	0	0	0	0	0	0	0	0	0	-0.89902	0	-1.4808	0	0	0	0	0	0	-1.5795	0	0	0	0	0	0	0	0	0	0	0	-1.4971	-1.4892	-1.475	-1.1776	0	0	0	0	0	0	0	0	0	-1.4041	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4222	-1.403	0	0	0	0	0	0	0	-1.5378	0	0	-0.6848	0	0	0	-1.5264	0	0	-1.5542	-1.5059	0	0	0	0	0	0	-1.5048	0	0	0	0	0	0	0	0	-1.4486	0	0	0	0	0	-0.8173	0	0	-1.1585	0	0	0	0	0	0	0	0	0	0	0	0	-1.5625	0	-0.88683	0	0	0	0	0	0	0	0	0	0	0	-1.5861	-1.4522	-0.8751	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4727	0	-1.5112	0	0	0	0	0	-1.5235	0	
Broad_focal_080606	Deletion Peak 15 - log2 ratios	9p21.3  	chr9:25193407-25299689(probes 893973:894065)        	chr9:25204556-25213188(probes 893983:893998)        	chr9:19473043-29283084(probes 890449:897053)        	2.7959e-39	   0.0011739	focal	Actual Log2 Ratio Given	0	0	0	-1.5239	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4808	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4971	-1.4892	-1.475	-1.1776	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4222	-1.4891	0	0	0	0	0	0	0	-1.5378	0	0	-0.6848	0	0	0	0	0	0	0	-1.5059	0	0	0	0	0	0	-1.5048	0	0	0	0	0	0	0	0	-1.4486	0	0	0	0	0	-0.8173	0	0	-1.331	0	0	0	0	0	0	0	0	0	0	0	0	-1.5625	0	-0.88683	0	0	0	0	0	0	0	0	0	0	0	-1.5861	-1.4522	-0.8751	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4727	0	-1.5112	0	0	0	0	0	-1.5235	0	
Broad_focal_080606	Deletion Peak 16 - log2 ratios	9p21.2  	chr9:26043745-26148370(probes 894580:894647)        	chr9:26049721-26087290(probes 894586:894611)        	chr9:19473043-29283084(probes 890449:897053)        	2.2641e-33	   0.0025664	focal	Actual Log2 Ratio Given	0	0	0	-1.5239	0	0	0	-1.1718	0	0	0	0	-1.5212	0	0	0	0	-1.4808	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4892	-1.475	-1.1776	0	0	0	0	0	0	-0.52504	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4891	0	0	0	0	0	0	0	-1.5378	0	0	-0.6848	0	0	0	0	0	0	0	-1.5059	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4486	0	0	0	0	0	-0.8173	0	0	-1.3179	0	0	0	0	0	0	0	0	0	0	0	0	-1.5625	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4522	-0.8751	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4727	0	-1.5112	0	0	0	0	0	-1.5235	0	
Broad_focal_080606	Deletion Peak 17 - log2 ratios	9p21.2  	chr9:26307974-26432347(probes 894766:894850)        	chr9:26323943-26364297(probes 894772:894804)        	chr9:19473043-29283084(probes 890449:897053)        	2.1849e-35	  1.4782e-12	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	-1.5212	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4892	-1.475	-1.1776	0	0	0	0	0	0	-0.52504	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4774	-1.4891	0	0	0	0	0	0	0	-1.5378	0	0	-0.6848	0	0	0	0	0	0	0	-1.5059	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4486	0	0	0	0	0	-0.8173	0	0	-1.3286	0	0	0	-1.4851	0	0	0	0	0	0	0	0	-1.5625	0	-0.96123	0	0	0	0	0	0	0	0	0	0	0	0	-1.4522	-0.8751	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4727	0	-1.5112	0	0	0	0	0	-1.5235	0	
Broad_focal_080606	Deletion Peak 18 - log2 ratios	9p21.1  	chr9:29370034-29810040(probes 897108:897429)        	chr9:29738354-29769549(probes 897376:897399)        	chr9:29370034-29998342(probes 897108:897496)        	0.00064858	    0.026061	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4892	0	0	0	0	0	0	0.3968	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4891	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5059	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5625	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 19 - log2 ratios	10p15.3 	chr10:1550339-1584021(probes 949185:949215)          	chr10:1578978-1584021(probes 949215:949215)          	chr10:1578978-1584021(probes 949215:949215)          	0.17828	     0.17828	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.38594	0	0	0	0	-0.6884	0	0	0	0	0	0	1.1781	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7206	0	0	0	0	0	0	0	0	-1.3175	0	0	-1.1157	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 20 - log2 ratios	10p14   	chr10:11476552-11490367(probes 956686:956698)      	chr10:11477690-11490367(probes 956687:956698)      	chr10:11476552-11490367(probes 956686:956698)      	0.0075554	   0.0075554	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0406	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.60566	0	0	0	0.77343	0	1.1354	0.7582	-1.0527	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.513	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.3824	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 21 - log2 ratios	10p13   	chr10:12619611-12624214(probes 957366:957377)      	chr10:12621793-12624214(probes 957372:957377)      	chr10:12619466-12639699(probes 957365:957393)      	3.5991e-07	  3.5991e-07	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	-1.4548	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.118	0	0	-1.4953	0	0	0	0	0	0	0	0	0	0	0	0	-1.2869	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.3668	0	0	0	0	-1.5507	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.66829	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 22 - log2 ratios	10p13   	chr10:16837040-16851030(probes 960855:960865)      	chr10:16842158-16851030(probes 960858:960865)      	chr10:16842158-16851030(probes 960858:960865)      	0.095155	    0.095155	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4971	0	0	0	0	0	0	0	0	0	0.69403	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.3704	0	0	0	0	-1.0113	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 23 - log2 ratios	10p11.23	chr10:30130233-30142968(probes 969617:969627)      	chr10:30130233-30142968(probes 969617:969627)      	chr10:30130233-30142968(probes 969617:969627)      	0.00069677	  0.00069677	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.475	-1.4892	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4919	0	0	0	0	0	0	0	0	0	0	0	0	-1.5636	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 24 - log2 ratios	10q11.21	chr10:44697479-44739338(probes 976180:976198)      	chr10:44697846-44739338(probes 976181:976198)      	chr10:44688039-44739338(probes 976171:976198)      	0.0013393	   0.0013393	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4043	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0871	-0.86192	0	0	-1.2487	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.1729	0	0	0	0	
Broad_focal_080606	Deletion Peak 25 - log2 ratios	10q11.23	chr10:52980195-52984601(probes 979134:979157)      	chr10:52980237-52984601(probes 979135:979157)      	chr10:52980195-52984601(probes 979134:979157)      	0.005018	    0.005018	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4398	-0.8245	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.3954	0	0	0	0	-1.5781	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 26 - log2 ratios	10q23.1 	chr10:83799383-83816617(probes 997921:997936)      	chr10:83799383-83815458(probes 997921:997932)      	chr10:83794071-83830521(probes 997919:997953)      	1.305e-09	   1.305e-09	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4787	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.2173	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9565	0	0	0	0	-1.0545	0	-1.4287	0	0	0	-1.0734	0	0	0	0	0	0	-0.9649	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5507	0	0	0	-1.2587	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 27 - log2 ratios	10q23.2 	chr10:89347624-89376421(probes 1001511:1001523)    	chr10:89347624-89376421(probes 1001511:1001523)    	chr10:89308315-90870436(probes 1001480:1002746)    	1.381e-12	   2.698e-07	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5666	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4516	0	0	0	0	0	0	0	0	0	0	0	-0.90848	0	0	0	0	-1.5378	-1.3577	0	0	0	-1.1744	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.718	-1.4486	0	0	0	0	0	0	0	0	0	-1.4927	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.6737	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 28 - log2 ratios	10q23.31	chr10:89569695-89618902(probes 1001667:1001702)    	chr10:89592240-89605116(probes 1001679:1001686)    	chr10:89308315-90870436(probes 1001480:1002746)    	1.3444e-17	  1.3444e-17	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5795	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.529	0	0	0	0	0	0	0	-1.5005	0	0	0	0	0	0	0	0	0	0	0	-1.5636	0	0	-1.513	-1.5378	-0.9947	0	0	0	-1.1744	0	0	0	0	0	0	0	0	0	0	0	0	-1.5054	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.6737	0	-0.9287	0	0	-1.5051	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 29 - log2 ratios	10q23.31	chr10:89879859-90051809(probes 1002042:1002163)    	chr10:89972939-89987139(probes 1002099:1002109)    	chr10:89308315-90870436(probes 1001480:1002746)    	5.7984e-14	  1.8062e-07	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5795	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4682	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5005	0	0	0	0	0	0	0	0	0	-1.5149	-1.4531	-1.5578	0	0	0	-1.5287	0	0	0	0	-1.1744	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.6737	0	-0.9287	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 30 - log2 ratios	10q23.31	chr10:90338800-90351815(probes 1002299:1002310)    	chr10:90338800-90347138(probes 1002299:1002309)    	chr10:89308315-90870436(probes 1001480:1002746)    	4.7215e-07	    0.016448	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5149	0	-1.5578	0	0	0	-1.5287	0	0	0	0	-1.1744	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5203	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5579	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 31 - log2 ratios	10q26.3 	chr10:132456311-132472645(probes 1030636:1030662)	chr10:132456311-132460300(probes 1030636:1030641)	chr10:132456311-132460300(probes 1030636:1030641)	0.13655	     0.13655	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.207	0	0	0	0	0	0	0	0	-0.9745	0	0	0	0	0	-1.5244	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 32 - log2 ratios	12q14.1 	chr12:58606033-58959731(probes 1145356:1145558)    	chr12:58864926-58904038(probes 1145507:1145530)    	chr12:58864926-58904038(probes 1145507:1145530)    	0.16136	     0.16136	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	-1.2531	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.79379	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3988	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4721	0	0	1.4722	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.78387	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.742	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 33 - log2 ratios	12q14.2 	chr12:61909457-62136835(probes 1147382:1147462)    	chr12:61910739-61930876(probes 1147383:1147396)    	chr12:61910739-61930876(probes 1147383:1147396)    	0.24772	     0.24772	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	-1.2594	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.873	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.4595	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4721	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0862	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4191	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 34 - log2 ratios	12q21.33	chr12:90159490-90173148(probes 1164350:1164361)    	chr12:90162851-90172914(probes 1164351:1164360)    	chr12:90159490-90172914(probes 1164350:1164360)    	0.030263	    0.030263	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.81899	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.1512	-1.3174	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.1562	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 35 - log2 ratios	12q24.32	chr12:127187729-127210018(probes 1188269:1188286)	chr12:127187729-127207331(probes 1188269:1188285)	chr12:127187729-127207331(probes 1188269:1188285)	0.20392	     0.20392	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.92269	0	0	0	0	0	0	-1.0832	0	-0.66551	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.72252	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 36 - log2 ratios	13q14.3 	chr13:49304288-49343738(probes 1212535:1212552)    	chr13:49304288-49343738(probes 1212535:1212552)    	chr13:49304288-49343738(probes 1212535:1212552)    	0.019815	    0.019815	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.3469	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.68592	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.85469	0	0	0	0	0	0	0	-1.6737	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 37 - log2 ratios	13q21.2 	chr13:58641010-59774761(probes 1217525:1218291)    	chr13:58707182-58713247(probes 1217587:1217598)    	chr13:58707182-58713247(probes 1217587:1217598)    	0.090317	     0.20458	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.50757	0	0	0	0	0	0	0	0	-1.5286	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0383	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.82349	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 38 - log2 ratios	13q21.32	chr13:67006295-67020238(probes 1222263:1222273)    	chr13:67016103-67020238(probes 1222272:1222273)    	chr13:67006295-67020238(probes 1222263:1222273)    	0.0015974	   0.0015974	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.3431	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.50757	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9674	0	0	-0.71212	0	0	0	0	0	0	0	0	0	-1.1008	0	0	0	0	0	0	-1.0501	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 39 - log2 ratios	17q11.2 	chr17:26425648-26673293(probes 1403598:1403699)    	chr17:26533127-26579279(probes 1403642:1403661)    	chr17:26533127-26579279(probes 1403642:1403661)    	0.15486	     0.15486	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4214	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.2727	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9151	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Broad_focal_080606	Deletion Peak 40 - log2 ratios	17q22   	chr17:53041012-53059654(probes 1417955:1417966)    	chr17:53041012-53057255(probes 1417955:1417965)    	chr17:53041012-53059654(probes 1417955:1417966)    	0.0088563	   0.0088563	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.87714	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.1078	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.394	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.4231	0	0	0	0	0	0	0	0	0	0	-0.828	0	0	0	0	0	0	0	0	0	0	-0.6776	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 1	1q32.1 	chr1:202305784-203006137(probes 30016:30193)    	chr1:202410873-202804270(probes 30057:30142)    	chr1:201425596-203776864(probes 29860:30366)    	1.1559e-11	  1.1559e-11	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 2	4q12   	chr4:54433380-54601117(probes 125530:125554)      	chr4:54437171-54526701(probes 125532:125550)      	chr4:48758630-57966442(probes 125196:126218)      	1.3616e-29	  1.3616e-29	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	1	0	0	2	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 3	7p12.1 	chr7:52633687-53133135(probes 224770:224875)      	chr7:52976850-52981164(probes 224832:224835)      	chr7:52511851-62267885(probes 224723:225511)      	4.9301e-12	    0.010581	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 4	7p11.2 	chr7:54916732-55049911(probes 225211:225220)      	chr7:54916732-55034965(probes 225211:225219)      	chr7:52511851-62267885(probes 224723:225511)      	4.4032e-219	 4.4032e-219	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	2	0	0	2	0	0	0	0	2	2	0	0	0	0	0	0	0	0	2	0	2	2	0	0	0	0	0	0	0	2	2	0	0	2	0	0	0	0	2	0	0	0	0	2	0	2	2	0	0	0	0	0	2	0	2	0	2	0	0	2	2	2	2	0	0	0	0	0	0	2	0	0	0	2	2	0	1	0	0	2	0	2	2	2	2	2	0	0	0	2	2	2	2	0	0	2	2	0	0	2	0	2	2	0	2	2	0	0	0	0	2	0	2	1	0	0	0	0	2	2	0	2	2	0	0	0	1	0	0	0	0	2	2	0	2	0	1	2	0	1	0	0	0	0	2	2	0	2	0	0	0	2	2	0	2	2	0	0	0	0	0	2	0	0	2	2	2	2	0	0	1	2	0	0	0	0	0	2	0	2	0	0	2	0	0	0	2	2	2	2	2	2	0	
peel_off.Stanford_focal_080606	Amplification Peak 5	7p11.1 	chr7:57525308-62267885(probes 225507:225511)      	chr7:57548558-62267885(probes 225508:225511)      	chr7:52511851-62267885(probes 224723:225511)      	3.6928e-11	    0.009241	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 6	7q21.2 	chr7:91663105-92829422(probes 229425:229566)      	chr7:91920704-92368853(probes 229440:229488)      	chr7:91920704-92368853(probes 229440:229488)      	0.036395	    0.036395	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 7	7q31.2 	chr7:116100223-116364359(probes 233146:233194)  	chr7:116106239-116297474(probes 233147:233179)  	chr7:116059029-117302075(probes 233142:233336)  	1.1927e-06	  1.1927e-06	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 8	7q34   	chr7:141918096-142213325(probes 237425:237446)  	chr7:141918683-142086317(probes 237426:237441)  	chr7:141915075-142213325(probes 237421:237446)  	0.0020705	    0.019455	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 9	11q23.3	chr11:116809407-116821755(probes 339040:339045)	chr11:116809407-116817298(probes 339040:339043)	chr11:116809407-116821755(probes 339040:339045)	0.026868	    0.026868	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 10	12q12  	chr12:33874676-36696953(probes 350820:350823)    	chr12:33874676-36696953(probes 350820:350823)    	chr12:33874676-36743815(probes 350820:350825)    	3.2055e-15	   1.728e-12	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	0	1	0	1	0	1	1	0	1	1	0	1	0	0	1	1	1	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	1	1	0	0	0	0	0	0	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 11	12q14.1	chr12:56310249-56597790(probes 353975:353992)    	chr12:56361666-56540281(probes 353978:353987)    	chr12:55869940-58278277(probes 353936:354258)    	7.2582e-27	  4.7919e-14	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	1	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 12	12q15  	chr12:67467111-67552673(probes 355982:355990)    	chr12:67467111-67543708(probes 355982:355988)    	chr12:67025934-69853222(probes 355875:356602)    	1.8414e-37	  1.8414e-37	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	2	2	0	0	2	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 13	19p13.3	chr19:1-1121444(probes 461332:461470)                	chr19:1-715388(probes 461332:461435)                 	chr19:1-715388(probes 461332:461435)                 	0.10654	     0.10654	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 14	19q12  	chr19:24159894-32836339(probes 464756:464765)    	chr19:32640703-32770984(probes 464758:464763)    	chr19:24159894-33022747(probes 464756:464774)    	2.6724e-21	  2.6724e-21	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	0	0	0	0	0	1	0	1	0	0	0	1	0	1	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	
peel_off.Stanford_focal_080606	Deletion Peak 1	1p36.23	chr1:8236482-9319246(probes 1212:1385)            	chr1:8346098-9319246(probes 1228:1385)            	chr1:8236482-9319246(probes 1212:1385)            	0.00039789	  0.00039789	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	
peel_off.Stanford_focal_080606	Deletion Peak 2	1p33   	chr1:50906925-51257213(probes 7858:7880)        	chr1:50931936-51235026(probes 7859:7875)        	chr1:50841691-51307967(probes 7849:7885)        	9.5718e-06	  9.5718e-06	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Stanford_focal_080606	Deletion Peak 3	3q28   	chr3:192548087-192555921(probes 115486:115490)	chr3:192548087-192550981(probes 115486:115488)	chr3:192547223-192555921(probes 115485:115490)	1.8122e-09	  1.8122e-09	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	
peel_off.Stanford_focal_080606	Deletion Peak 4	6q25.2 	chr6:154845377-154854135(probes 209687:209690)	chr6:154845377-154854135(probes 209687:209690)	chr6:154845377-154854135(probes 209687:209690)	0.21777	     0.21777	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Stanford_focal_080606	Deletion Peak 5	9p21.3 	chr9:21964219-21996272(probes 273875:273882)    	chr9:21970152-21987871(probes 273876:273877)    	chr9:19451194-30494424(probes 273268:275789)    	3.1018e-289	 3.1018e-289	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	0	0	0	2	0	0	2	2	2	1	2	0	0	2	0	0	1	2	2	0	2	0	1	0	0	0	1	0	0	1	2	0	0	1	0	0	0	0	0	0	1	1	0	1	0	0	2	0	1	0	0	1	2	0	2	0	1	0	2	1	2	2	2	0	2	1	1	0	0	2	0	0	0	2	2	0	2	2	1	1	0	2	1	2	2	1	0	0	0	0	1	2	0	0	0	1	2	0	0	2	0	0	1	1	0	2	0	1	1	0	1	1	0	0	2	0	0	0	1	0	0	2	2	2	0	0	1	0	0	1	0	1	0	1	1	0	1	1	0	0	0	2	1	2	0	0	2	2	2	0	1	0	2	2	2	2	0	1	1	2	2	0	0	0	0	2	1	2	2	2	1	2	0	0	2	1	1	2	1	2	0	2	2	2	1	0	2	2	2	2	0	0	1	
peel_off.Stanford_focal_080606	Deletion Peak 6	10q23.2	chr10:89545695-89635452(probes 309086:309100)  	chr10:89589557-89596168(probes 309097:309097)  	chr10:89314644-90317632(probes 309027:309259)  	3.5375e-19	  3.5375e-19	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	2	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	1	0	
peel_off.Stanford_focal_080606	Deletion Peak 7	12q14.1	chr12:58452259-59101538(probes 354286:354354)  	chr12:58530907-58593473(probes 354304:354309)  	chr12:58530907-58593473(probes 354304:354309)  	0.13725	     0.13725	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Stanford_focal_080606	Deletion Peak 8	13q21.1	chr13:57001073-57432002(probes 376784:376819)  	chr13:57124944-57196411(probes 376786:376799)  	chr13:57124944-57196411(probes 376786:376799)  	0.021365	    0.021365	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 1 - log2 ratios	1q32.1 	chr1:202305784-203006137(probes 30016:30193)    	chr1:202410873-202804270(probes 30057:30142)    	chr1:201425596-203776864(probes 29860:30366)    	1.1559e-11	  1.1559e-11	focal	Actual Log2 Ratio Given	0	0	0	0.95802	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7029	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3695	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3167	0	0	0	0	0.6985	0	0.3915	0	1.2443	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7469	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2009	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.312	0	0	0	0	0	0	0	0	0	0	0	0.9675	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 2 - log2 ratios	4q12   	chr4:54433380-54601117(probes 125530:125554)      	chr4:54437171-54526701(probes 125532:125550)      	chr4:48758630-57966442(probes 125196:126218)      	1.3616e-29	  1.3616e-29	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0.9713	0	0	0	1.0982	0	0	0	0	0	0	0.483	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2758	0	0.5923	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3325	0	0	0	0	0	0	0	0	0	0	0	0	0	0.9721	0	0	0	0	1.2356	1.1809	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6813	0	0	0	0	0	0	0	0.6348	0	0	0	0	0.3225	0	0	0	0	1.2124	0	0	1.1219	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3361	0.6294	0	0.8166	0	0.5924	0	0	1.1637	0	0	0.4255	0	1.1948	0	0	0	0	0	0	0	0	0	0	0	0	0.9928	0	0	0	0	0	0	0	0	0	0	0.4631	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3269	0	0	0	0	0.2309	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 3 - log2 ratios	7p12.1 	chr7:52633687-53133135(probes 224770:224875)      	chr7:52976850-52981164(probes 224832:224835)      	chr7:52511851-62267885(probes 224723:225511)      	4.9301e-12	    0.010581	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.4917	0	0	0	1.0091	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7363	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6395	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4832	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0811	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2386	0	0	0	0	0	0	1.3982	0	0.8723	0	-0.8338	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2153	0	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 4 - log2 ratios	7p11.2 	chr7:54916732-55049911(probes 225211:225220)      	chr7:54916732-55034965(probes 225211:225219)      	chr7:52511851-62267885(probes 224723:225511)      	4.4032e-219	 4.4032e-219	focal	Actual Log2 Ratio Given	0	1.3157	0	0	1.4654	0	0	0	0	1.2716	1.4515	0	0	0	0	0	0	0	0	1.4296	0	1.4255	1.4006	0	0	0	0	0	0	0	1.406	1.4844	0	0	1.4879	0	0	0	0	1.3494	0	0	0	0	1.4449	0	1.4994	1.0554	0	0	0	0	0	1.3393	0	1.2714	0	1.1671	0	0	1.1099	1.2355	1.0841	1.1437	0	0	0	0	0	0	1.2084	0	0	0	1.1462	1.2591	0	0.6395	0	0	1.2392	0	1.3841	0.9271	1.3897	1.4992	1.1438	0	0	0	1.1227	1.4832	1.4859	1.186	0	0	1.4984	1.4428	0	0	1.4177	0	1.292	1.3406	0	1.3178	1.1329	0	0	0	0	1.2115	0	1.0987	0.51909	0	0	0	0	1.001	1.2264	0	1.0889	1.2292	0	0	0	0.542	0	0	0	0	1.0176	1.2823	0	1.1495	0	0.8701	0.97856	0	0.8542	0	0	0	0	1.1232	1.2999	0	1.2659	0	0	0	1.242	1.1563	0	1.48	1.4466	0	0	0	0	0	1.2386	0	0	1.414	1.4909	1.4501	1.3716	0	0	0.7601	1.5236	-0.8338	0	0	0	0	1.1221	0	1.2771	0	0	0.9811	0	0	0	1.5174	1.2927	1.6053	1.2153	0.9172	1.2051	0	
peel_off.Stanford_focal_080606	Amplification Peak 5 - log2 ratios	7p11.1 	chr7:57525308-62267885(probes 225507:225511)      	chr7:57548558-62267885(probes 225508:225511)      	chr7:52511851-62267885(probes 224723:225511)      	3.6928e-11	    0.009241	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3393	0	0	0.7881	0	0.8761	0	0	0.5522	0	0.7349	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.5111	0	0	0.4902	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8062	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.595	0	0	0	0	0	0.5371	0	0.8074	0	0	0.5615	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 6 - log2 ratios	7q21.2 	chr7:91663105-92829422(probes 229425:229566)      	chr7:91920704-92368853(probes 229440:229488)      	chr7:91920704-92368853(probes 229440:229488)      	0.036395	    0.036395	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.43261	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.36612	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7114	0	0	0	0	0	0.991	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.4781	0	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 7 - log2 ratios	7q31.2 	chr7:116100223-116364359(probes 233146:233194)  	chr7:116106239-116297474(probes 233147:233179)  	chr7:116059029-117302075(probes 233142:233336)  	1.1927e-06	  1.1927e-06	focal	Actual Log2 Ratio Given	0	0	0	0	0	0.5388	0	0	0	0	0	0.8089	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.953	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7393	0	1.1764	0	0	0	0	0	0	0	0	1.2138	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0836	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 8 - log2 ratios	7q34   	chr7:141918096-142213325(probes 237425:237446)  	chr7:141918683-142086317(probes 237426:237441)  	chr7:141915075-142213325(probes 237421:237446)  	0.0020705	    0.019455	focal	Actual Log2 Ratio Given	0	0.5301	0	0	0.463	0	0	0	0	0	0	0	0	0	0	0	0.4013	0	0	0	0	0.56131	0	0	0	0	0	0	0	0	0	0	0	0	0.4345	0	0	0	0	0	0	0	0.4392	0	0	0	0	0	0	0	0.4166	0	0	0	0	0	0	0	0	0.7994	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 9 - log2 ratios	11q23.3	chr11:116809407-116821755(probes 339040:339045)	chr11:116809407-116817298(probes 339040:339043)	chr11:116809407-116821755(probes 339040:339045)	0.026868	    0.026868	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7004	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6135	0	0	0.8069	0	0	0	0	0	0	0	0.98538	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 10 - log2 ratios	12q12  	chr12:33874676-36696953(probes 350820:350823)    	chr12:33874676-36696953(probes 350820:350823)    	chr12:33874676-36743815(probes 350820:350825)    	3.2055e-15	   1.728e-12	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0.5606	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3012	0	0	0	0	0	0.4859	0	0	0	0	0.2377	0.4654	0	0	0	0	0.4692	0	0.7494	0	0.6217	0.2871	0	0.4684	0.4653	0	0.2981	0	0	0.3473	0.4197	0.3416	0	0	0	0.305	0	0	0	0	0.32117	0	0	0	0	0	0	0	0	0	0	0	0.3163	0	0	0	0	0	0	0	0.4607	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3785	0	0	0	0	0	0.3826	0	0	0	0	0	0.5152	0	0	0	0	0	0	0.43614	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.4814	0	0	0	0	0	0	0	0.27279	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3212	0	0	0.2513	0	0.4536	0	0	0.242	0.46174	0	0	0	0	0	0	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 11 - log2 ratios	12q14.1	chr12:56310249-56597790(probes 353975:353992)    	chr12:56361666-56540281(probes 353978:353987)    	chr12:55869940-58278277(probes 353936:354258)    	7.2582e-27	  4.7919e-14	focal	Actual Log2 Ratio Given	0	1.1836	1.2078	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3021	0	0	0	0	0	0	1.0045	0	0	0	0	0	0.9877	0	0	0	0	0	0	0	0	0	1.0292	1.0837	0	0.3962	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6607	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1509	0.624	0	0	0	0	0.9462	0	0	0	0.8343	0	0	0	0	0	0	0	1.0104	0	0.9448	0	0	0	0	0	0.4865	0.94319	0	0	1.199	-0.9854	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.19596	0.6631	0	0.87124	0	0	0	0.7476	0.7716	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 12 - log2 ratios	12q15  	chr12:67467111-67552673(probes 355982:355990)    	chr12:67467111-67543708(probes 355982:355988)    	chr12:67025934-69853222(probes 355875:356602)    	1.8414e-37	  1.8414e-37	focal	Actual Log2 Ratio Given	0	0	1.1175	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0304	0	0	0	1.4568	0	0	0	0	0.9545	0	0	0	0	1.3377	0	0	0	0	0	0	0	0	0	0	1.1577	1.4845	0	0	0	0	0	0	0	0	0	-0.4549	0	0	0	0	0	0	0	0.9634	0	0	0	0.3779	0	0	1.0692	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0574	0	0	0	0	0	0	0	0	1.3357	0	0	0	0	0.9382	0	0	0	0	0	1.2545	1.0796	0	0	1.2593	0	0	1.0798	0	0	1.2217	0	0	0	0	0	0	0	0	0	1.2336	0	0	0	0.5198	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2715	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1719	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 13 - log2 ratios	19p13.3	chr19:1-1121444(probes 461332:461470)                	chr19:1-715388(probes 461332:461435)                 	chr19:1-715388(probes 461332:461435)                 	0.10654	     0.10654	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0.4429	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.4731	0	0	0	0	0	0	0	0	0	0	0	0	0	0.4826	0	0	0	0	0	0	0	0	0	0	0	0	0.2698	0	0	0	0	0	0	0	0	0	0.4554	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.5248	0	0	0	0	0	0	0	0	0	0	
peel_off.Stanford_focal_080606	Amplification Peak 14 - log2 ratios	19q12  	chr19:24159894-32836339(probes 464756:464765)    	chr19:32640703-32770984(probes 464758:464763)    	chr19:24159894-33022747(probes 464756:464774)    	2.6724e-21	  2.6724e-21	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.5359	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.5225	0	0.5806	0.399	0	0	0	0	0	0	0.4979	0	0.5872	0	0	0.585	0	0	0	0	0	0	0	0	0	0	0.5725	0	0	0	0.2999	0	0	0	0.3246	0.366	0	0	0	0	0	0	0	0	0	0	0	0	0.6345	0.4816	0.6168	0.57313	0	0	0	0	0	0	0.6266	0	0.276	0	0	0	0.4256	0	0.577	0	0	0.5212	0	0.528	0	0	0	0	0	0	0.3748	0	0	0	0	0	0	0.5383	0.6233	0	0	0	0	0	0.46365	0	0	0	0.4434	0	0.58384	0.4475	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.35404	0.7292	0	0.6069	0	0	0	0	0	
peel_off.Stanford_focal_080606	Deletion Peak 1 - log2 ratios	1p36.23	chr1:8236482-9319246(probes 1212:1385)            	chr1:8346098-9319246(probes 1228:1385)            	chr1:8236482-9319246(probes 1212:1385)            	0.00039789	  0.00039789	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4452	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5141	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4764	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.3947	0	0	0	0	
peel_off.Stanford_focal_080606	Deletion Peak 2 - log2 ratios	1p33   	chr1:50906925-51257213(probes 7858:7880)        	chr1:50931936-51235026(probes 7859:7875)        	chr1:50841691-51307967(probes 7849:7885)        	9.5718e-06	  9.5718e-06	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.532	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5639	0	0	0	0	0	0	0	0	-1.1214	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0525	0	0	-0.3975	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5579	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Stanford_focal_080606	Deletion Peak 3 - log2 ratios	3q28   	chr3:192548087-192555921(probes 115486:115490)	chr3:192548087-192550981(probes 115486:115488)	chr3:192547223-192555921(probes 115485:115490)	1.8122e-09	  1.8122e-09	focal	Actual Log2 Ratio Given	0	0	-0.6242	0	0	0	0	0	0	0	-1.4993	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5488	0	0	0	0	0	0	0	0	0	-1.5943	0	0	0	0	-1.5807	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.6188	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5149	0	0	-0.69472	0	0	0	0	0	-0.5414	0	0	0	0	0	0	0	0	0	
peel_off.Stanford_focal_080606	Deletion Peak 4 - log2 ratios	6q25.2 	chr6:154845377-154854135(probes 209687:209690)	chr6:154845377-154854135(probes 209687:209690)	chr6:154845377-154854135(probes 209687:209690)	0.21777	     0.21777	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	-0.79822	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.8287	0	0	0	0	0	0	-1.4764	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Stanford_focal_080606	Deletion Peak 5 - log2 ratios	9p21.3 	chr9:21964219-21996272(probes 273875:273882)    	chr9:21970152-21987871(probes 273876:273877)    	chr9:19451194-30494424(probes 273268:275789)    	3.1018e-289	 3.1018e-289	focal	Actual Log2 Ratio Given	-0.979	0	0	0	-1.5346	0	0	-1.5448	-1.5133	-1.5391	-0.777	-1.5347	0	0	-1.3241	0	0	-0.7392	-1.4899	-1.5381	0	-1.5342	0	-1.25	0	0	0	-0.4153	0	0	-0.9646	-1.3439	0	0	-1.2761	0	0	0	0	0	0	-0.5745	-1.1192	0	-1.168	0	0	-1.5673	0	-0.687	0	0	-0.84208	-1.5189	0	-1.5479	0	-0.7421	0	-1.5793	-1.0042	-1.553	-1.4835	-1.5488	0	-1.5487	-0.5692	-0.673	0	0	-1.5639	0	0	0	-1.5721	-1.5651	0	-1.3408	-1.5807	-1.1448	-1.0867	0	-1.3315	-0.8336	-1.5038	-1.5008	-0.9969	0	0	0	0	-0.8061	-1.5141	0	0	0	-1.1923	-1.5082	0	0	-1.5003	0	0	-1.223	-1.1567	0	-1.4814	0	-0.8368	-0.7027	0	-0.7514	-0.9488	0	0	-1.3248	0	0	0	-0.4474	0	0	-1.5383	-1.5287	-1.507	0	0	-0.6897	0	0	-0.5827	0	-1.2973	0	-0.5544	-1.0875	0	-1.0579	-0.81214	0	0	0	-1.548	-0.894	-1.5117	0	0	-1.5579	-1.5168	-1.4776	0	-1.1305	0	-1.5397	-1.5169	-1.52	-1.5534	0	-0.96224	-1.0617	-1.3601	-1.5375	0	0	0	0	-1.5091	-0.49655	-1.5253	-1.6018	-1.4718	-0.7247	-1.4764	0	0	-1.5149	-0.7237	-1.262	-1.5411	-0.5698	-1.5572	0	-1.6085	-1.5266	-1.5323	-0.92006	0	-1.4826	-1.5209	-1.3947	-1.5563	0	0	-1.1188	
peel_off.Stanford_focal_080606	Deletion Peak 6 - log2 ratios	10q23.2	chr10:89545695-89635452(probes 309086:309100)  	chr10:89589557-89596168(probes 309097:309097)  	chr10:89314644-90317632(probes 309027:309259)  	3.5375e-19	  3.5375e-19	focal	Actual Log2 Ratio Given	0	0	-0.8843	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.8045	0	0	-0.9239	-1.5342	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4969	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9715	0	0	0	0	0	0	0	0	0	0	0	0	-1.6428	0	-0.8862	-1.5397	-1.5169	0	0	0	0	0	-1.3983	0	0	0	0	0	0	0	0	0	0	-0.8664	0	0	0	0	0	0	0	-0.5976	0	0	0	0	0	0	0	0	0	0	-1.5563	0	-0.51104	0	
peel_off.Stanford_focal_080606	Deletion Peak 7 - log2 ratios	12q14.1	chr12:58452259-59101538(probes 354286:354354)  	chr12:58530907-58593473(probes 354304:354309)  	chr12:58530907-58593473(probes 354304:354309)  	0.13725	     0.13725	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0045	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.4714	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.5736	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.5906	0	0	0	0	0	0	0	0	0	0	0	-0.65581	0	0	1.1338	-0.9854	0	1.2029	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.19596	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Stanford_focal_080606	Deletion Peak 8 - log2 ratios	13q21.1	chr13:57001073-57432002(probes 376784:376819)  	chr13:57124944-57196411(probes 376786:376799)  	chr13:57124944-57196411(probes 376786:376799)  	0.021365	    0.021365	focal	Actual Log2 Ratio Given	-0.3769	0	0	0	0	0	0	0	0	0	0	0	0	-1.5509	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.0115	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.4784	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.8039	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Harvard_standard_080606	Amplification Peak 1	1q32.1  	chr1:202658776-202801980(probes 13620:13631)	chr1:202671059-202692535(probes 13621:13621)	chr1:201057464-203776979(probes 13448:13725)	3.0911e-14	 3.0911e-14	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	1	0	0	2	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	2	1	1	0	2	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	1	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	2	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	2	0	0	0	1	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	1	1	0	0	1	
Harvard_standard_080606	Amplification Peak 2	3q26.33 	chr3:182340789-182889727(probes 46707:46731)	chr3:182612379-182775400(probes 46720:46724)	chr3:179231502-185031373(probes 46475:46887)	0.00075424	 0.00075424	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	1	0	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	2	0	1	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	2	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	1	0	0	1	0	2	2	
Harvard_standard_080606	Amplification Peak 3	4q12    	chr4:54486892-54580397(probes 51320:51330)    	chr4:54507498-54546893(probes 51322:51324)    	chr4:52598603-57439308(probes 51153:51548)    	6.9349e-31	 6.9347e-31	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	2	0	0	2	1	2	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	1	2	0	0	2	0	0	1	0	0	0	0	0	1	0	1	0	0	0	2	2	0	2	2	0	0	2	0	0	2	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	2	0	0	1	0	1	0	0	
Harvard_standard_080606	Amplification Peak 4	7p22.3  	chr7:1639162-1992068(probes 84468:84499)        	chr7:1767516-1810891(probes 84481:84483)        	chr7:1-158620917(probes 84371:95946)           	2.5306e-68	     0.1021	broad	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	1	1	1	2	1	0	0	0	1	1	1	1	0	1	0	1	0	1	1	1	1	0	1	1	0	0	1	1	1	1	0	0	1	0	0	1	1	1	1	1	0	0	0	1	1	1	1	1	1	0	1	1	1	1	0	1	1	0	1	1	1	1	1	1	1	1	2	0	1	1	1	1	1	1	1	0	0	0	1	0	1	1	1	1	1	0	1	1	1	1	1	1	0	1	1	0	0	1	1	1	1	1	1	1	1	0	1	1	2	1	0	1	0	1	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	2	1	0	1	1	0	1	1	1	1	1	1	1	1	0	1	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	0	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	1	1	0	1	0	1	2	1	0	1	1	1	
Harvard_standard_080606	Amplification Peak 5	7p11.2  	chr7:54892257-55065092(probes 88393:88398)    	chr7:54892257-55025313(probes 88393:88394)    	chr7:1-158620917(probes 84371:95946)           	4.2499e-277	  4.25e-277	both	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	1	2	1	2	2	0	0	0	1	2	2	2	0	1	0	1	0	1	1	1	2	0	2	2	0	2	1	1	1	1	0	0	2	2	1	1	2	1	1	1	0	2	0	1	1	1	2	1	2	0	2	1	1	1	0	1	2	0	2	1	2	1	1	2	2	2	2	1	1	1	1	1	1	2	1	0	0	2	2	0	2	1	1	2	1	2	2	2	1	2	1	2	2	1	2	2	2	1	1	1	2	2	1	1	1	0	2	2	2	2	2	1	1	1	2	1	1	2	2	1	2	1	2	0	2	1	1	1	1	2	2	0	2	1	0	1	2	2	1	2	2	2	2	0	1	2	2	0	1	2	2	2	2	2	0	1	1	1	1	2	0	0	2	2	2	2	2	2	2	1	2	1	2	1	1	1	2	1	1	1	2	0	2	0	0	2	1	0	1	0	2	2	2	2	2	1	2	
Harvard_standard_080606	Amplification Peak 6	7q31.2  	chr7:116093417-116401214(probes 92355:92385)	chr7:116107046-116151901(probes 92356:92359)	chr7:1-158620917(probes 84371:95946)           	4.1637e-92	 1.1749e-07	both	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	1	1	1	0	1	2	0	0	1	1	1	1	2	1	0	1	0	1	1	1	1	0	1	1	0	0	1	1	1	1	0	0	1	0	0	1	1	1	1	1	1	0	0	1	1	1	1	1	1	0	2	1	1	1	0	1	1	1	1	1	1	1	2	1	1	1	2	1	1	1	1	1	1	0	1	0	0	1	1	0	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	0	0	1	1	1	1	1	1	1	1	0	1	1	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	1	2	0	1	1	1	1	0	1	1	1	0	1	1	1	0	1	1	1	1	1	0	0	2	1	1	1	1	0	0	1	0	1	0	1	1	2	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	0	1	1	0	1	1	1	2	1	0	2	1	1	
Harvard_standard_080606	Amplification Peak 7	12q14.1 	chr12:56378328-56478010(probes 138081:138084)	chr12:56378328-56460711(probes 138081:138081)	chr12:55968934-57829729(probes 138024:138157)	4.4623e-32	 4.4623e-32	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	1	2	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	2	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	2	2	0	0	1	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	2	0	0	0	2	2	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	2	0	0	0	2	2	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	
Harvard_standard_080606	Amplification Peak 8	12q15   	chr12:67457153-67556212(probes 138825:138833)	chr12:67457153-67543828(probes 138825:138831)	chr12:67306482-68256637(probes 138804:138890)	1.0308e-23	  1.499e-18	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	1	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	2	1	0	0	0	2	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	1	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	2	0	0	0	2	2	0	0	2	0	0	2	0	0	2	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	
Harvard_standard_080606	Amplification Peak 9	19p12   	chr19:20366292-21159278(probes 182739:182765)	chr19:20617303-20792987(probes 182745:182746)	chr19:1-63558786(probes 180955:185436)         	3.389e-13	 3.3889e-13	broad	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	1	1	0	0	0	1	1	1	1	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	1	0	1	0	0	0	0	0	1	0	1	0	1	0	1	1	1	1	1	1	1	1	1	0	0	1	1	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	1	1	0	1	1	0	0	0	0	0	1	0	0	0	0	1	1	0	1	0	0	0	1	0	0	0	1	1	0	1	0	0	1	0	0	0	1	0	1	1	0	0	0	0	0	1	0	0	1	1	1	1	0	0	0	1	0	0	1	1	0	0	1	0	0	0	1	0	0	0	0	1	1	0	1	1	0	0	0	0	0	1	0	0	0	0	0	1	1	1	0	1	0	0	1	0	0	0	0	1	1	1	0	0	0	0	
Harvard_standard_080606	Amplification Peak 10	20q13.31	chr20:55135628-55833446(probes 189643:189692)	chr20:55224367-55693349(probes 189650:189685)	chr20:1-62379057(probes 185438:190275)          	3.757e-14	 3.7569e-14	broad	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	1	0	0	0	0	0	1	1	1	0	0	1	0	0	0	0	0	1	1	0	1	0	0	0	0	1	1	1	0	0	0	1	1	0	0	0	0	1	0	1	1	0	1	0	1	0	0	0	1	0	1	1	0	0	1	0	0	1	1	0	0	1	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	1	1	1	1	0	1	1	0	1	0	1	1	0	1	1	1	0	1	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	1	0	1	1	1	1	1	0	0	0	0	1	0	0	1	0	1	1	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	1	1	1	0	0	0	0	1	0	0	0	0	0	0	1	1	0	1	1	0	1	0	0	0	0	1	1	1	0	0	0	0	
Harvard_standard_080606	Deletion Peak 1	1p36.23 	chr1:7902773-7945224(probes 355:359)            	chr1:7920358-7932035(probes 357:357)            	chr1:3304759-9944778(probes 108:547)            	1.2308e-05	  1.2308e-05	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	1	1	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	1	1	1	1	0	0	2	0	0	0	0	0	1	0	0	0	1	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	1	1	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	1	1	1	0	0	1	0	0	1	0	0	1	1	0	1	0	0	0	1	0	0	0	0	
Harvard_standard_080606	Deletion Peak 2	6q26    	chr6:162647400-162943702(probes 83847:83869)	chr6:162681429-162762348(probes 83850:83850)	chr6:107314915-170737897(probes 79769:84369)	8.2881e-08	  8.2883e-08	broad	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	1	0	1	0	0	0	0	1	0	1	1	0	0	0	1	0	0	0	0	0	1	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	1	0	0	0	1	0	0	1	0	0	1	1	0	0	0	0	1	0	1	1	1	0	1	1	0	1	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	1	1	0	1	0	0	0	1	1	0	0	0	1	0	0	0	1	0	0	1	0	0	0	1	0	1	0	0	1	0	0	0	
Harvard_standard_080606	Deletion Peak 3	9p21.3  	chr9:21958041-21993649(probes 107059:107062)  	chr9:21968346-21980520(probes 107060:107060)  	chr9:1-70238437(probes 105456:108194)           	7.4726e-284	 7.4727e-284	both	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	2	0	1	1	2	1	0	2	2	2	2	2	2	0	0	2	0	0	1	2	2	0	2	0	2	2	0	1	0	1	0	0	2	2	0	1	2	0	0	0	1	1	0	1	2	0	2	1	0	2	2	1	1	0	1	1	2	1	2	1	1	0	2	2	2	2	2	1	2	1	1	1	0	2	0	0	1	2	2	1	2	2	2	2	0	1	1	0	0	2	0	0	2	2	0	2	1	1	0	2	1	0	2	0	1	0	1	0	0	2	2	2	0	1	1	0	0	2	1	1	2	0	2	1	1	0	2	1	2	0	1	2	2	2	0	1	1	2	2	2	1	2	2	1	0	1	2	0	0	1	2	1	2	2	0	1	1	1	2	0	0	0	1	2	2	2	1	2	2	2	1	0	2	0	0	0	1	2	1	2	2	1	2	1	2	2	2	2	2	0	2	2	2	2	0	0	0	
Harvard_standard_080606	Deletion Peak 4	10p12.1 	chr10:27363056-29576096(probes 115803:115967)	chr10:27618453-28207063(probes 115832:115865)	chr10:1-135061898(probes 113702:123515)       	2.3351e-85	     0.12656	broad	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	1	1	0	1	1	0	0	1	1	1	1	0	0	0	1	0	1	1	1	1	1	1	1	0	1	1	0	1	1	0	0	1	1	0	1	1	0	1	1	0	0	1	1	1	0	1	1	1	0	1	1	0	1	0	1	1	0	1	0	1	0	1	1	1	1	0	1	1	1	0	1	1	1	1	0	0	1	1	0	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	0	1	1	1	1	0	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	1	1	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	0	0	1	1	1	1	0	1	1	1	1	1	1	1	
Harvard_standard_080606	Deletion Peak 5	10q23.31	chr10:89580501-89643513(probes 119734:119738)	chr10:89594690-89630076(probes 119735:119737)	chr10:1-135061898(probes 113702:123515)       	6.7464e-126	 6.7473e-126	broad	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	1	2	1	1	1	1	1	1	1	1	1	0	0	1	1	0	1	1	1	1	1	2	1	0	1	1	0	1	1	0	0	1	1	0	1	1	1	1	1	0	1	1	1	1	0	1	1	1	1	1	1	1	1	0	1	1	1	1	0	1	0	1	1	1	1	1	1	1	1	0	1	1	1	1	0	0	1	1	0	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	1	1	1	1	0	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	0	1	1	1	1	0	2	1	1	2	2	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	0	0	1	1	1	1	0	1	1	1	2	1	1	1	
Harvard_standard_080606	Deletion Peak 6	13q14.3 	chr13:50776362-51537463(probes 146636:146719)	chr13:51224460-51511557(probes 146680:146716)	chr13:1-113964305(probes 143610:150794)     	4.2723e-22	  4.2724e-22	broad	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	0	1	1	1	1	1	0	0	0	0	0	1	0	1	0	1	1	1	0	0	1	0	0	0	0	1	1	1	0	0	0	1	1	1	0	0	0	1	1	1	0	0	0	0	0	0	1	0	1	1	0	0	1	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	1	0	1	0	0	1	1	0	1	0	0	0	1	0	1	1	0	1	0	1	1	1	1	0	0	0	0	0	1	0	0	1	1	0	0	1	1	1	0	1	1	0	0	0	0	1	1	1	0	0	0	0	0	1	0	1	0	1	1	0	0	0	0	1	1	0	0	1	1	0	0	0	0	1	0	0	0	1	0	0	0	1	1	1	1	0	0	0	1	0	0	1	0	1	1	1	0	0	1	1	0	0	1	0	1	1	1	1	1	0	1	0	0	0	0	0	0	1	0	0	1	
Harvard_standard_080606	Deletion Peak 7	14q24.2 	chr14:71089282-72076479(probes 155051:155154)	chr14:71358479-71660450(probes 155076:155105)	chr14:1-103043790(probes 150796:157416)     	4.8441e-09	  4.8441e-09	broad	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	1	0	1	1	0	0	1	0	0	1	1	1	0	0	0	1	0	0	1	0	0	1	1	0	0	1	0	1	1	0	0	1	0	0	1	0	0	1	0	0	0	1	0	0	1	0	1	0	1	0	1	0	0	0	1	0	0	1	0	1	0	0	0	0	0	1	1	0	1	1	0	0	0	0	0	0	1	0	0	1	0	1	0	0	1	0	0	0	0	0	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	1	1	1	0	0	1	0	1	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	1	0	0	0	1	0	0	1	0	1	0	0	0	0	1	0	1	1	0	0	
Harvard_standard_080606	Deletion Peak 8	15q15.1 	chr15:37995614-38330978(probes 158601:158642)	chr15:38001417-38136480(probes 158602:158619)	chr15:31049621-43106468(probes 157984:159169)	0.029832	    0.029832	broad	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	1	0	0	0	0	1	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	1	1	1	0	0	0	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	1	0	1	0	0	0	0	0	1	1	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	1	0	0	0	1	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	
Harvard_standard_080606	Deletion Peak 9	22q13.31	chr22:44173757-44583401(probes 195078:195120)	chr22:44206924-44503959(probes 195083:195110)	chr22:1-45440212(probes 193193:195158)       	5.3124e-13	  5.3125e-13	broad	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	1	1	0	1	0	0	1	1	0	0	0	0	1	1	0	0	0	0	0	1	1	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	1	0	0	1	0	0	1	0	0	0	1	0	1	1	1	0	1	0	0	0	1	0	1	1	0	0	1	0	0	0	0	1	0	0	0	0	0	1	0	0	0	1	0	0	1	0	1	0	1	1	1	1	0	0	0	1	0	0	0	0	1	0	1	0	1	1	0	1	1	1	0	0	0	1	0	0	1	1	0	1	0	1	1	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	1	0	1	1	0	0	0	0	0	1	1	0	0	0	1	1	1	1	0	0	1	1	0	0	1	1	0	1	0	0	0	1	1	1	0	0	1	0	1	0	1	0	0	0	0	0	1	
Harvard_standard_080606	Amplification Peak 1 - log2 ratios	1q32.1  	chr1:202658776-202801980(probes 13620:13631)	chr1:202671059-202692535(probes 13621:13621)	chr1:201057464-203776979(probes 13448:13725)	3.0911e-14	 3.0911e-14	focal	Actual Log2 Ratio Given	0.1659	0.0054	0	1.5419	-0.0026	0.0687	0.0225	0.5091	0.0103	0.0031	-0.0131	-0.0054	0.3385	0.0858	0.0053	-0.0054	0.5472	0.023	0.001	-0.0188	-0.0086	0.0113	0	0.0023	0.0138	0.0338	0.0996	0.0183	0.0651	-0.0026	-0.0307	0.0044	0.0098	0.0061	-0.016799	-0.0064	1.5243	-0.0161	0	0	-0.0044	-0.0021	-0.1708	-0.008	0.0168	-0.0062	-0.0042	0.0053	0.0057061	0.1625	0.2199	-0.007	0.0062	0.41231	0	-0.0009	-0.0161	-0.1083	0.0053	0.4295	0.4369	0.0254	-0.1253	0.0209	-0.0017	0.0162	-0.0124	0.0007	0.020925	0.0064532	0	1.0376	0.0102	0.5022	0.0101	0.0063	0.0158	0.38045	0.476	0.0149	-0.0347	-0.00085584	-0.0128	0.4217	0.0909	-0.0047435	0	0.0415	0.0153	-0.0517	1.5082	0.259	0.7895	0.0018	1.5375	0	0.4261	-0.021	0.411	0.0119	0.0394	0.0067	-0.0093	0.0561	0.2608	-0.0126	-0.006	0.4495	0.0314	0.5973	-0.046	0.1873	-0.0198	0.0102	0.00017312	0.3727	-0.0248	-0.061397	0.1083	1.5624	-0.0251	0.0043	-0.0595	-0.0415	0.0969	0.0122	0.0088	0.0011	0.0008	0.0162	0.1463	0.1111	1.5072	0.001515	0.048556	-0.0122	0.1355	-0.0023	0.0027	-0.008	0.0125	-0.0095	0.0172	0.0637	0.066328	0.341	-0.0162	0.0083	-0.0134	1.4352	0.4734	-0.0072	0.0497	0.019	0.0099	0.0034	0.0064	0.0083	0.0158	0.17005	0.394	0.0043898	-0.0149	0.0683	0.0133	-0.0035	0.0091	1.5217	0.0144	0.0091	-0.0215	0.5049	0.5242	-0.0055	0.0749	0.0246	0.017695	-0.0942	-0.0027	-0.0522	-0.0076728	-0.0023	1.5429	0.0175	0.0071	-0.0262	0.0182	-0.0035441	-0.1382	0.9083	0.0103	-0.0028	0.1988	0.4406	0.0699	-0.0472	0.2715	
Harvard_standard_080606	Amplification Peak 2 - log2 ratios	3q26.33 	chr3:182340789-182889727(probes 46707:46731)	chr3:182612379-182775400(probes 46720:46724)	chr3:179231502-185031373(probes 46475:46887)	0.00075424	 0.00075424	focal	Actual Log2 Ratio Given	0.2808	0.0313	0.0108	0.0259	0.5948	-0.834	0.0292	0.032	0.0291	0.0088	0.5233	0	0.1475	0.0013	0.0149	0.0258	0.0129	0.0019	0.0336	0.0063	0.0121	0.0121	0.0117	0.0071	0.0714	1.4461	0.0176	0.0216	-0.0617	0.0211	0.0261	0.0684	0.054	0.0072	0.0154	0.0019	0.0182	0.1626	-0.0294	-0.0012	0.0617	0.0262	-0.1762	0.0109	0.016	0.0003	0.0085	0.0303	0.035	-0.0118	0.2835	0.0101	0.0273	-0.197	0.0209	0.0135	0.0212	-0.0321	0	-0.0027	-0.0182	0.0157	0.1353	0.0382	0.018	0.0201	-0.0017	0.0063	0.1689	0.104	0.0017143	0.0183	0.3048	0.01	0.0205	0.0084	0.0049	0.016045	0.0202	-0.0174	0.4385	0.0087442	0.0592	-0.0056	0	0.0043565	0.0424	0.0394	0.0273	0.0243	0.0293	-0.243	-0.0148	0.0559	0.0026	0.0213	0	-0.031225	0.0089	0.0476	0	0.0043	0.0109	0.0084	0.0182	0.0012	0.0071	0.0083	0.0624	0.0288	0.0595	0.3327	0.044398	0.0512	0.0080731	0.0231	0.0253	0.018903	0.0188	0.0491	0.3225	0.0997	0.029	-0.2234	0.12533	0.0079	0.0155	-0.009	0.0055	1.5132	-0.3006	0.2807	0.0081	0.5581	0.054256	0.7077	-0.002	0.0187	0.5031	0.0313	0.0005	0.0186	0.003	-0.1283	-0.11747	-0.0423	0.0258	0.0318	0.0432	0.0645	-0.0112	0.0125	0.0165	-0.2647	0.0124	0.3348	0.3222	0.0054	0.0192	0.072948	0.0298	-0.0055	-0.0027	1.5245	0.0051	0.0238	0.0183	0.003	0.4773	0.5144	0.0213	0.0364	0.0073	0	-0.178	0.0354	-0.013405	0.473	0.0073	0.2282	-0.0047	0.0215	0.0124	-0.4059	0.0184	0.0095	0.4756	-0.0041	0.0307	0.0226	0.1419	0.0218	0.0127	0.4554	0.0689	1.5364	1.0504	
Harvard_standard_080606	Amplification Peak 3 - log2 ratios	4q12    	chr4:54486892-54580397(probes 51320:51330)    	chr4:54507498-54546893(probes 51322:51324)    	chr4:52598603-57439308(probes 51153:51548)    	6.9349e-31	 6.9347e-31	focal	Actual Log2 Ratio Given	-0.0061	0.0119	0.0519	0.0231	0.0128	-0.0461	0.0415	1.5431	-0.0126	-0.0117	0.0415	0.0185	1.4966	-0.0113	-0.0124	0.021694	0.0034	-0.0045	-0.007	1.1058	0.0107	-0.0086	0.0241	0.0278	0.013	-0.0115	0.0059	-0.0771	0.1335	0.216	0.0338	-0.2898	0.0476	0.0114	1.5384	0.0098	0.006	1.5376	0.2571	1.4884	0.0367	0.0344	0.0344	0.0157	0.0155	0.0072	0.0069	0.4431	0	-0.0323	-0.0973	0.0049	0.0353	0.4125	-0.0129	0.0145	0.0218	0.055	0.0012	0.0299	-0.0339	-0.0043	0.7262	0.5879	0.5773	0.0051	0.0232	0.0019	0.0887	0.0199	0.005	0.0448	-0.0083	0	0.0239	-0.0003	1.4722	0.00014522	0.0046	-0.060903	0.0079	1.5077	1.5043	0.0137	-0.0148	-0.0015435	0.0259	-0.0968	0.0123	0.0079265	-0.016	-0.2508	0.0202	1.4499	0.004	0.0375	0.0312	0.005	0.0189	0.5151	0.7341	1.5227	0.0152	-0.0177	1.5125	0.0069	0.0228	0.2962	-0.0013	0.0009	0.0692	0.0528	0.0261	0.3676	0.0034731	0.2856	0.0023	0.018403	-0.0485	1.1061	1.5602	0.0239	1.4797	1.4965	-0.0149	-0.001983	1.5197	-0.0101	0.0018	1.5132	0.1491	1.4853	0.8963	0.0003	-0.2919	0.0178	-0.0874	0.0319	0.0001	0.0182	-0.0191	0.0023	-0.0264	-0.0157	0.10513	-0.0462	-0.003	0.0424	0.0078	1.3218	-0.0214	0.0112	-0.0019	0.256	-0.0084	0.0077	-0.003	1.5069	-0.0052	-0.009352	0.0091	0	0.0126	-0.0445	0.0149	-0.0047	0.0194	-0.0025	0.0043	0	0.5831	0.0197	-0.0153	0.0389	-0.2212	0.0076825	0.51229	0.0091	0.001	0.2594	0.0134	0.0173	0.072	0.3908	-0.0166	0.0043	-0.0004	0.0036	-0.1327	1.5306	-0.5104	0.0272	0.1873	0.0245	0.4318	0	-0.1841	
Harvard_standard_080606	Amplification Peak 4 - log2 ratios	7p22.3  	chr7:1639162-1992068(probes 84468:84499)        	chr7:1767516-1810891(probes 84481:84483)        	chr7:1-158620917(probes 84371:95946)           	2.5306e-68	     0.1021	broad	Actual Log2 Ratio Given	0.769	0.5186	0.3936	1.004	0.5438	0.0695	-0.80651	0.0331	0.29976	0.3968	0.5309	0.3624	0.047	0.2768	-0.1221	0.3422	0.0086	0.2493	0.2982	0.5109	0.4791	0.0077	0.5435	0.4817	0.0023	-0.0175	0.24679	0.5561	0.2288	0.2466	0.0158	0.0245	0.3161	-0.086479	-0.0051	0.2649	0.4018	0.3732	0.5297	0.3113	0.0009	-0.0371	0.0313	0.2612	0.5254	0.4577	0.4123	0.4221	0.515	0	0.6034	0.1635	0.3463	0.407	-0.0414	0.3552	0.5129	-0.301	0.5538	0.8047	0.5293	0.826	0.1561	0.3153	0.5153	0.4545	0.9433	0.0039	0.4953	0.2975	0.3425	0.3847	0.2764	0.53828	0.3218	0.0248	0.0069	-0.032755	0.5265	-0.168	0.4133	0.36234	0.4327	0.4303	0.1674	0.045364	0.1356	0.4194	0.1449	0.4997	0.7794	0.2709	-0.0699	0.4198	0.4231	-0.0811	-0.0047	0.3202	0.4149	0.3736	0.4688	0.48	0.42	0.3113	0.5702	0	0.2595	0.4954	1.1665	0.3927	-0.063	0.3519	0.0839	0.3098	0.35497	0.5917	0.389	0.4688	0.2899	0.2688	0.4765	0.6668	0.3653	-0.1933	0.58061	0.4681	0.8736	0.271	0.4701	1.2371	0.4495	-0.211	0.832	0.5426	0.050556	0.6049	0.3542	0.42794	0.5042	0.4803	0.3281	0.5545	0.4086	0.0792	0.41283	0.705	0.4927	0.0596	0.1323	0.4955	0.4362	0.2573	0.2991	-0.058	-0.049474	0.3454	0.21425	0.2208	0.3989	0.47185	-0.0031	0.0091	0.6692	0.4391	0.3409	0.2687	0.3383	0.3632	0.4648	0.3757	0.1464	0.2557	0.35981	0.26547	0.4904	0.35986	0.25799	0.2515	0.27193	0.65934	0.4632	0.012	-0.0641	-0.4067	0.0169	0.4974	0.4048	0.01103	0.3205	-0.0022	0.5336	0.9243	0.5183	0.0024	0.3653	0.548	0.4554	
Harvard_standard_080606	Amplification Peak 5 - log2 ratios	7p11.2  	chr7:54892257-55065092(probes 88393:88398)    	chr7:54892257-55025313(probes 88393:88394)    	chr7:1-158620917(probes 84371:95946)           	4.2499e-277	  4.25e-277	both	Actual Log2 Ratio Given	0.769	1.5439	0.3936	1.5419	1.5587	0.0695	0.0122	0.0107	0.4345	1.4738	1.5979	1.5207	0.047	0.2768	-0.0079	0.3422	0.0086	0.2493	0.2982	0.5109	1.5518	0.0077	1.5448	1.5384	0.0023	1.4461	0.24679	0.7799	0.2288	0.2466	0.0158	0.0245	1.5453	1.4993	0.349	0.3316	1.5243	0.3732	0.5298	0.3113	0.0009	1.5308	0.0313	0.2612	0.5254	0.4577	1.5348	0.4221	1.5472	0	1.4799	0.1635	0.3463	0.407	-0.0048	0.3552	1.548	0.0217	1.5038	0.8047	1.5417	0.826	0.2348	1.5898	1.5362	1.5163	1.4945	0.2363	0.4953	0.2975	0.3425	0.3975	0.2764	1.5158	0.3218	0.0248	0.0081	1.4976	1.5231	0.0587	1.204	0.36234	0.4327	1.5412	0.1674	1.507	1.5213	1.5164	0.1449	1.5367	0.7794	1.4779	1.5241	0.674	1.5375	1.5427	1.2755	0.36	0.4149	0.4277	1.5293	1.4185	0.42	0.3113	0.561	0	1.5271	1.5523	1.1765	1.5321	1.539	0.4052	0.3669	0.3834	1.2456	0.5972	0.4385	1.5371	1.5681	0.3111	1.5602	0.7104	1.4797	-0.1251	1.5143	0.4569	0.5414	0.271	0.47795	1.5132	1.5421	-0.2419	1.5072	0.5426	0.050556	0.63698	1.5681	1.5473	0.5042	1.5677	1.4606	1.5908	1.4731	0.0792	0.40633	1.4956	1.5993	0.0596	0.1323	1.4352	1.476	1.5522	1.5114	1.4843	0.0236	0.3454	0.3169	0.3315	0.3989	1.5197	-0.0031	0.0091	1.5307	1.5245	1.5324	1.5473	1.5566	1.5217	1.5074	0.3757	1.2783	0.2557	1.5283	0.4205	0.8248	0.42061	1.0948	0.2515	0.3102	0.65934	1.5264	0.012	1.5429	-0.4067	-0.8682	1.5439	0.4862	0.0685	0.321	-0.0022	1.4803	1.5609	1.5721	1.5153	1.5462	0.548	1.5037	
Harvard_standard_080606	Amplification Peak 6 - log2 ratios	7q31.2  	chr7:116093417-116401214(probes 92355:92385)	chr7:116107046-116151901(probes 92356:92359)	chr7:1-158620917(probes 84371:95946)           	4.1637e-92	 1.1749e-07	both	Actual Log2 Ratio Given	0.7778	0.5683	0.3936	0.0358	0.5491	1.1662	0.0122	0.0107	0.4345	0.4421	0.5467	0.1408	1.4966	0.2768	-0.0079	0.3422	0.0086	0.2493	0.32757	0.5109	0.481	0.0077	0.5542	0.56812	0.0023	0.0763	0.259	0.5867	0.2288	0.2466	0.0158	0.0245	0.4102	0.0303	0.0054	0.3316	0.4054	0.7438	0.5298	0.3207	0.8697	0.0296	0.0518	0.284	0.5254	0.4577	0.4153	0.4601	0.5231	0	1.0503	0.1635	0.3683	0.4211	-0.0048	0.3552	0.5148	0.6215	0.5668	0.8047	0.5471	0.826	1.5124	0.6612	0.5244	0.523	0.9486	0.224	0.5393	0.3103	0.3425	0.4164	0.2764	0.0359	0.3401	0.0248	0.0081	0.41955	0.54	0.0587	0.416	0.36234	0.4327	0.4297	0.1674	0.042256	0.2396	0.5157	0.1493	0.6114	0.7794	0.2737	0.4517	0.4275	0.534	0.073	0.0449	0.36	0.4569	0.2356	0.4792	0.596	0.4542	0.3192	0.6188	0.0053	0.2597	0.56647	1.2625	0.5837	0.6109	0.4874	0.1833	0.4185	0.35347	0.6295	0.4953	0.5221	0.2814	0.3696	0.5775	0.7753	0.4901	0.4825	0.591	0.4742	0.6128	0.271	0.48	0.2208	0.5422	1.4853	0.8295	1.6072	0.050556	0.63964	0.57096	0.4579	0.5035	0.0088097	0.3333	0.5675	0.4127	0.0792	0.40633	0.558	0.4971	0.0596	0.1323	0.2538	0.433	0.3499	0.4541	0.0365	0.0282	1.5676	0.3169	0.3457	0.3989	0.47485	-0.0031	0.0091	0.6929	0.0489	0.653	0.0698	0.3949	0.3868	0.9751	0.3757	0.3007	0.2714	0.5118	0.4205	0.4972	0.434	0.25972	0.2515	0.3119	0.6676	0.007	0.012	0.0063	-0.4067	0.0299	0.5562	0.5122	0.0663	0.321	0.3791	0.2978	0.9036	0.5206	0.0167	1.5462	0.5536	0.4196	
Harvard_standard_080606	Amplification Peak 7 - log2 ratios	12q14.1 	chr12:56378328-56478010(probes 138081:138084)	chr12:56378328-56460711(probes 138081:138081)	chr12:55968934-57829729(probes 138024:138157)	4.4623e-32	 4.4623e-32	focal	Actual Log2 Ratio Given	0.2504	1.5439	1.5333	0.0064	0.007	0.0518	0.0133	0.0085	0.0113	0.016	0.0111	0.0096	0.5991	-0.0008	0.0146	0	-0.0022	-0.0335	-0.1007	-0.013696	0.0105	-0.0858	-0.0068	1.5384	-0.0113	-0.0308	0.003	0.3005	-0.2591	-0.0057	-0.0097094	1.5214	0.0046	0.0081	0.015	0.3235	-0.3267	1.5376	-0.4098	-0.0232	0.0109	-0.0044688	-0.5283	0.0046	0.0074	-0.3218	0	1.2836	1.5472	0.0317	-0.0696	0.6873	-0.0004	-0.207	0.0027	0.0092	0.0013806	-0.0033	-0.0131	1.685	-0.0174	0.5669	0	-0.0185	-0.0016	0	0	-0.0088	0.1658	0.0052	0	0.0308	1.526	-0.0007	-0.0084	0.0134	0.0077	0.0011452	-0.0013	-0.0311	-0.6227	0.0015442	-0.0057	0.0291	-0.0031	0.0031565	-0.0422	1.5164	-0.0697	-0.0601	-0.1601	-0.3505	-0.0437	0.034	1.5375	-0.0635	1.4559	0.1015	-0.0141	-0.0276	1.5293	1.5227	0.038	-0.0158	1.5125	-0.0493	-0.0060757	1.5523	-0.4363	-0.0816	0.0035	-0.0028	-0.0439	-0.2503	0	-0.0824	-0.3747	-0.028597	1.5681	0.0087	-0.0504	-0.054	0.0346	1.4965	-0.276	1.5063	0.008	-0.003	0	1.5132	1.5421	-0.1135	0.7231	-0.0041	-0.31534	-0.036477	-0.0153	0.0065	0.0034	0.0028	-0.0103	-0.0131	0	1.4956	0	-0.0196	-0.0047	0.0086	0.0076	0.0972	1.476	-0.0029	0.0287	0.3091	0.0155	0.0107	0.0124	0.0051	0.02	-0.10765	0.0196	0.0146	0.2588	-0.0234	0.0137	0.0062	0.0153	0.0111	0.0237	0.0134	0.0233	0.0155	0.0202	1.0981	-0.2351	0	-0.0025055	0.0313	-0.00202	-0.0395	-0.0011	0.0063	-0.2781	0.0231	-0.0045	0.526	0.0025	0.0001	-0.137	0.02	0.0153	0	-0.0088	-0.0498	0.002	1.5364	-0.3097	
Harvard_standard_080606	Amplification Peak 8 - log2 ratios	12q15   	chr12:67457153-67556212(probes 138825:138833)	chr12:67457153-67543828(probes 138825:138831)	chr12:67306482-68256637(probes 138804:138890)	1.0308e-23	  1.499e-18	focal	Actual Log2 Ratio Given	0.2504	0.0289	1.5333	0.0064	0.007	0.0518	0.0133	0.0085	0.0113	0.016	0.0111	0.0096	0.5991	-0.0008	0.0146	0	-0.0022	-0.0335	-0.1007	-0.013696	0.0105	1.4359	-0.0068	0.047264	-0.0113	-0.0308	1.5202	0.3005	-0.2591	-0.0057	0.0017	1.5214	0.0046	0.0081	0.015	0.3235	1.5243	0.0927	-0.4098	-0.0232	0.0109	-0.0044688	-0.5283	0.0046	0.0074	-0.3218	0	1.4942	1.5472	0.0317	-0.0696	0.0046	-0.0004	-0.207	0.0027	0.0092	0.0013806	-0.0033	-0.0131	-0.6741	-0.0174	0.5669	0	-0.0185	-0.0016	0	0	1.49	0.1658	0.0052	0	1.4653	0.0003	-0.0007	1.5181	0.0134	0.0077	0.0011452	-0.0013	-0.0311	-0.03	0.0015442	-0.0057	0.0291	-0.0031	0.0031565	0.0202	1.5164	-0.0697	0.0139	-0.1601	1.4779	0.0238	0.034	0.0038	0.0227	1.4559	0.1015	-0.0141	0.0325	1.5293	1.5227	0.038	-0.0165	1.5125	0.0025	-0.0060757	1.5523	-0.4347	0.0228	1.539	0.0611	0.0245	-0.1733	0	-0.0824	-0.3747	0.026603	1.5681	0.0087	0.0032	0.001	1.4797	-0.0617	-0.276	-0.0005	0.008	-0.003	0	-0.0227	0.1798	-0.1135	0.0017	-0.0041	-0.31534	-0.038906	-0.0153	0.0065	1.5416	0.0028	-0.0103	-0.0131	0	-0.0056	0	-0.0196	-0.0047	0.0086	0.0076	0.0331	0.0005	-0.0029	0.0287	0.3091	0.0155	0.026456	0.0124	0	0.02	-0.12815	0.0196	0.0146	0	-0.0234	0.0137	0.0062	0.0153	0.0111	0.0237	0.0134	0.0233	0.0155	0.0202	0.005	-0.2351	0	-0.0025055	0.0313	-0.00202	-0.0395	-0.0011	0.0063	-0.2781	0.0231	-0.0045	0.0012	0.0025	0.0001	-0.137	0.02	0.0153	0	-0.0088	-0.0498	1.5462	-0.0008	-0.3097	
Harvard_standard_080606	Amplification Peak 9 - log2 ratios	19p12   	chr19:20366292-21159278(probes 182739:182765)	chr19:20617303-20792987(probes 182745:182746)	chr19:1-63558786(probes 180955:185436)         	3.389e-13	 3.3889e-13	broad	Actual Log2 Ratio Given	-0.0269	-0.0969	-0.0666	0.4757	0.4656	0	-0.0827	-0.1087	0.4089	0.4031	0.4038	0.3283	-0.0325	0.0777	0.004	-0.0689	-0.0649	-0.078	-0.086	0.388	0.3644	0.0551	0.4019	-0.0866	-0.0777	0.032	-0.056	0.0748	-0.1357	0.1003	-0.0655	-0.1004	0.2886	0.3231	-0.0512	0.24751	0.3224	0.0724	0.357	-0.0126	0.3383	-0.0436	0	-0.0501	-0.0417	-0.0233	0.2565	-0.0483	0.4273	-0.0342	0.1694	-0.048	0.241	0.3781	0.4372	0.1936	0.3992	0.3945	0.3984	0.6068	0.3863	-0.0716	-0.1106	0.2802	0.4193	0.7542	-0.0689	-0.0476	-0.0546	-0.0709	-0.0231	-0.0994	-0.0426	0.49	-0.0599	-0.0356	-0.0437	-0.042095	0.4185	-0.0665	-0.0608	-0.027056	-0.051	-0.057	-0.0798	0.34396	-0.054696	-0.0209	0.0999	0.4592	-0.072	0.4189	0.3353	-0.1157	0.4118	0.3665	-0.0651	0.0414	-0.1205	-0.0658	0.0796	0.3455	-0.0731	-0.077	0.0561	-0.0719	0.2024	0.4817	-0.0263	0.3867	-0.0879	-0.0987	-0.0203	0.2737	-0.022327	-0.077	-0.0183	0.4068	0.2715	-0.0441	0.4135	-0.0672	-0.0761	0.2975	-0.0041	-0.0219	-0.0879	0.233	-0.0153	0.4249	0.3019	0.0274	-0.0298	-0.0192	-0.010413	-0.0602	0.2087	-0.0688	-0.0504	0.3816	0.3565	0.4848	0.4594	0.0543	-0.083372	0.0545	0.3764	0.035	0.00059821	0.1499	0.4652	-0.0519	-0.0022	0.2247	0.0365	-0.0592	0.0432	0.2639	0.0466	-0.60815	0.0327	0.049	0.302	0.44	-0.0103	0.349	0.3243	-0.0046	-0.0902	0.0364	0.0849	-0.0159	0.5276	0.0068	0.0492	-0.083	-0.078242	0.1027	0.2631	0.3637	0.331	-0.0481	0.3744	-0.0892	-0.0433	0.4884	-0.0223	-0.0521	0	-0.0369	0.4306	0.4389	0.47108	-0.0362	-0.0181	-0.0353	-0.1389	
Harvard_standard_080606	Amplification Peak 10 - log2 ratios	20q13.31	chr20:55135628-55833446(probes 189643:189692)	chr20:55224367-55693349(probes 189650:189685)	chr20:1-62379057(probes 185438:190275)          	3.757e-14	 3.7569e-14	broad	Actual Log2 Ratio Given	0.0752	-0.0446	0.3071	-0.005	-0.0251	0.0214	-0.0645	-0.0446	0.3972	0.3658	0.4839	-0.0145	-0.0151	0.2259	0.0201	-0.0293	-0.0284	0.0181	0.07	0.4642	0.412	-0.034	0.4592	-0.0236	-0.0364	-0.0247	-0.058954	0.2474	0.1882	0.2185	-0.0141	-0.1118	-0.0353	0.3075	0.5815	-0.0649	-0.0275	0.1186	0.0523	0.2824	-0.0143	0.4899	0.203	-0.0264	0.2226	0.0049	0.3758	-0.0243	-0.0339	-0.6929	0.1975	-0.0199	0.2921	0.4032	-0.0229	0.1151	0.4524	0.0558	-0.0471	0.5414	0.4303	-0.0227	-0.259	0.3766	1.5362	-0.0484	-0.0234	-0.0163	-0.0304	-0.0292	0.013502	-0.0338	-0.0131	0.5227	-0.0245	0.0011	-0.017	-0.013855	-0.0351	0	0.1626	-0.0065558	-0.0536	-0.0236	0.0655	0.33456	-0.0316	0.0054	0.1308	0.5128	0.4176	0.4285	0.4154	0.0137	0.252	0.4237	-0.0116	0.3207	-0.0312	0.3868	0.3674	0.0108	0.3721	0.1604	0.1401	-0.0069	0.2338	0.529	-0.0024	0.4168	-0.0541	-0.1804	0.0814	-0.032	-0.0043269	0.3074	0.0069	-0.043297	0.165	-0.0418	0.4452	-0.0283	-0.0455	-0.0014	0.0494	0.4812	-0.0147	0.3232	0.4696	0.5514	0.2674	0.2537	-0.0093	-0.0084	-0.33424	0.016	0.2936	-0.046	-0.0361	0.386	0.0174	0.5122	0.429	0.0411	0.095028	0.0074	0.4365	-0.0631	-0.0316	0.0431	0.0299	0.2939	-0.0493	0.264	-0.0243	-0.0595	-0.0169	-0.0271	-0.024	0.001948	-0.0162	0	0.3215	-0.0799	-0.0559	0.3724	0.3023	0.3493	-0.054664	-0.0315	0.0027	-0.0306	0.4049	-0.0557	0.0098	-0.039	0.0087945	0.0103	-0.01	0.2013	0.3831	-0.021	0.4235	0.2817	-0.8452	0.5054	-0.0087	-0.0213	-0.0266	-0.0145	0.5057	0.4829	0.4933	-0.027	0.0093	-0.032707	0.0181	
Harvard_standard_080606	Deletion Peak 1 - log2 ratios	1p36.23 	chr1:7902773-7945224(probes 355:359)            	chr1:7920358-7932035(probes 357:357)            	chr1:3304759-9944778(probes 108:547)            	1.2308e-05	  1.2308e-05	focal	Actual Log2 Ratio Given	0.1683	-0.0723	0	0	-0.0404	-0.1414	-0.0032	-0.0613	-0.0058	0.0355	-0.0849	-0.5311	-0.3774	0.1941	0.0579	-0.0441	-0.9164	-0.0047	-0.0563	-0.0796	-0.0671	0.0535	-0.0587	-0.0426	0.0138	0.0568	0.0996	-0.057	0.0741	-0.0602	-0.039	-0.0437	-0.5564	-0.4949	-0.4451	-0.054894	-0.0422	-0.0415	-0.0451	-0.0182	-0.1204	-0.0378	0.0103	-0.0183	-0.0295	-0.0096	-0.0494	-0.0377	-0.0548	0.078	-0.6999	-0.007	-0.0669	0.3942	0	-0.4729	-0.0191	-0.1058	-0.0929	0.362	0.2764	-0.0178	-0.2734	-0.6922	-0.0813	-1.4837	-0.0179	-0.0277	-0.0759	-0.087	-0.0026	0.0085	0.2408	-0.8428	-0.016	-0.0173	-0.0031	-0.025655	-0.0619	-0.2419	-0.0371	-0.00085584	-0.618	0.3602	0.0883	0.010056	-0.2282	0.0415	-0.003	-0.0696	-0.035	0.23218	-0.0602	0.0073	-0.0408	-0.6742	-0.6199	-0.5221	-0.62302	-0.6185	-0.0233	0.0067	-1.4604	0.0215	0.1431	-0.0126	-0.0333	-0.0657	-0.4846	-0.096	0.4419	0.1044	-0.1535	-0.4976	-0.012927	-0.3841	-0.0248	-0.133	0.2271	-0.0088	-0.0251	-0.0302	-0.0491	-0.0006	0.0987	0.0044	-0.0185	-0.0137	-0.0088	0.0005	-0.0674	0.1247	-0.0112	-0.0111	0.0037557	0.0284	-0.0617	-0.0551	-0.0177	-0.0851	-0.3982	-0.0554	0.0407	0.0637	0.038128	0.403	-0.8063	-0.0269	-0.0199	0.0905	0.0252	-0.504	-0.3608	0	-0.682	-0.4936	-0.0108	-0.0322	0.0114	0.23031	0.2315	0.0237	-0.0477	0.0126	-0.5431	0.0034	-0.0157	-0.0165	-0.057381	0.0091	0.0147	-0.0113	-1.4717	-0.0488	-0.5333	-0.6779	-0.40811	-0.0773	-0.024	-0.9406	-0.1114	-0.0371	-0.7955	-0.0816	0.0071	-0.8968	-0.7632	-0.0466	-0.1382	-0.0191	-0.0487	-0.0704	-0.8397	-0.0145	0.041952	-0.066	0.3207	
Harvard_standard_080606	Deletion Peak 2 - log2 ratios	6q26    	chr6:162647400-162943702(probes 83847:83869)	chr6:162681429-162762348(probes 83850:83850)	chr6:107314915-170737897(probes 79769:84369)	8.2881e-08	  8.2883e-08	broad	Actual Log2 Ratio Given	-0.035	-0.7746	0.0289	-0.9232	0.0268	0.0774	0.0526	-0.0126	-0.7504	-0.0138	-0.852	-0.4051	0	-0.0017	-0.1157	-0.6612	0.0266	0.0348	0.0331	0.007	0.0104	-0.4124	-0.0118	0.02	0.0209	-0.3008	0.0917	-0.0093	0.0736	-0.2788	-0.769	0.0291	0.0379	-0.0312	0.2935	0.0132	0.0227	-0.157	0.1154	0.0045	-0.0866	0.0211	0.0366	0.0069	-0.3395	0.008	-0.5768	0.0005	-0.0088256	-0.0198	-0.5499	0.0157	0.0221	-0.1979	0.0076	-0.0965	-0.7859	-0.8664	0.0205	0.0297	0.0314	0.0159	-0.1605	0.0169	-0.7984	-1.1828	-0.80868	0.0108	-0.4301	-0.2299	0.0093	-0.4387	0.0202	0.0077	0.0254	0.0259	0.0215	-0.75375	-0.6012	-0.8395	-0.0397	0.011444	0.0184	0.0264	-0.033	0.0010565	-0.0001	-0.1033	-0.0045	0.0135	0.0256	0.0298	-0.6514	0.0316	0.0059	0.0225	-0.5525	0.0187	0.0446	0.0122	-0.0352	0.0031	0.0015	0.0226	0.1817	0.0108	-0.3181	0.0034	-0.379	-0.8539	-0.8144	0.0399	-0.0126	-0.0045	0.0090731	0.003	0.0319	0.023003	-0.6837	-0.0078	-0.0105	0.0268	-0.5835	-0.0014	0.0779	0.0151	0.0151	0.014	0.0109	-0.075	0	0.2603	0.0138	0.0115	0.070456	-0.171	0.004	-0.0198	0.0096	-0.0218	-0.0112	0.0165	-0.0206	0	-0.21147	-0.0545	0.0211	0.0159	-0.0772	0.0144	-0.0135	0.0102	0.0139	-0.9336	0.0107	-0.0234	-0.0038	0.0171	0.004	0.009048	0.0012	-0.0026	-0.9187	-0.6157	-0.0856	-0.6498	-0.5411	0.0151	-0.8727	-0.0227	-0.0126	0.2554	-0.7581	-0.1849	0.086	0.0075	0.018495	-0.9195	0.0087	-0.0299	0.0233	-0.3213	0.0059	0.4087	-0.8519	0.0155	0.0159	0	-0.1266	0.011	-0.5086	0.0275	0.0119	-0.6033	-0.0479	-0.0013	0.1308	
Harvard_standard_080606	Deletion Peak 3 - log2 ratios	9p21.3  	chr9:21958041-21993649(probes 107059:107062)  	chr9:21968346-21980520(probes 107060:107060)  	chr9:1-70238437(probes 105456:108194)           	7.4726e-284	 7.4727e-284	both	Actual Log2 Ratio Given	-1.3773	-0.0184	-0.3599	-0.9533	-1.4413	-0.8551	0.5635	-1.4569	-1.4832	-1.5262	-1.4021	-1.4793	-1.5034	0.1481	0.0415	-1.4505	-0.0068	0.0222	-1.011	-1.3975	-1.4482	0.0019	-1.4552	-0.006	-1.4728	-1.5539	0.121	-0.5744	0	-0.5048	-0.0578	-0.0136	-1.3367	-1.3566	0.3159	-0.57864	-1.4757	0.1351	-0.0042	0.0252	-0.4404	-0.8042	-0.0026	-0.7976	-1.4273	-0.0061	-1.4652	-0.61246	-0.0139	-1.4931	-1.5201	-0.1523	-1.0132	-0.0014	-0.8637	-1.1318	-1.452	-1.2416	-1.4962	-0.2132	-1.2152	-0.001	-1.4876	-1.4069	-1.4638	-1.4837	-1.5055	-0.3788	-1.4167	-0.9009	-1.109	-0.47699	0.235	-1.4842	-0.0057	-0.0032	-0.963	-1.5024	-1.4769	-0.8294	-1.4687	-1.4923	-1.4957	-1.4588	0.0577	-1.1387	-0.3843	0.051	0.019	-1.4633	0.023	0.0317	-1.4759	-1.5189	-0.0128	-1.4573	-0.5934	-1.1939	-0.0039	-1.498	-0.8196	0.0095	-1.4604	0.0037	-0.5685	0.0016	-0.6941	0.0224	0.0367	-1.4679	-1.461	-1.4578	0.0124	-0.559	-1.0128	0.359	0.0761	-1.4629	-0.1591	-0.8833	-1.4398	0.016499	-1.5203	-0.7826	-0.6942	0.0068	-1.4803	-1.012	-1.4348	-0.0455	-0.2743	-1.5147	-1.4928	-1.3928	0.054656	-1.1573	-0.4766	-1.4527	-1.4584	-1.4323	-1.1277	-1.4092	-1.5269	-0.1277	0.089328	-1.0481	-1.4007	-0.0279	-0.1015	-1.2594	-1.524	-1.0348	-1.4886	-1.5157	-0.0149	-1.1748	-1.1356	-1.2362	-1.5155	-0.030898	0.001	0.0094	-0.4662	-1.4755	-1.4676	-1.4527	-0.5218	-1.4783	-1.4926	-1.494	-0.7811	0.0208	-1.4717	-0.0394	0.1283	-0.002	-0.72381	-1.5328	-0.9328	-1.4102	-1.4736	-0.8128	-1.4571	-0.5717	-1.5163	-1.4561	-1.5136	-1.4965	-1.5158	0.0068	-1.5197	-1.4391	-1.4279	-1.4847	0.0578	0.0115	0.0046	
Harvard_standard_080606	Deletion Peak 4 - log2 ratios	10p12.1 	chr10:27363056-29576096(probes 115803:115967)	chr10:27618453-28207063(probes 115832:115865)	chr10:1-135061898(probes 113702:123515)       	2.3351e-85	     0.12656	broad	Actual Log2 Ratio Given	-0.0156	-0.9203	-0.5226	-0.019299	-0.8742	-0.1275	0.474	0.5409	-0.6332	-0.629	-0.876	-0.5271	0.033	-0.0338	0.0498	-0.4518	-0.0128	-0.3123	-0.3737	-0.8186	-0.7239	-0.4093	-0.9007	-0.8529	-0.0187	-0.7332	-0.6229	-0.1187	-0.3312	-0.3119	-0.0157	-0.0104	-0.5209	-0.5137	1.2864	-0.4694	-0.5671	-0.1078	-0.4313	-0.3825	0.2912	-0.0045	-0.1863	-0.3463	-0.3521	1.0762	-0.5817	-0.631	-0.8192	-0.0018034	-0.6113	-0.1677	0	-0.2073	0.5157	-0.1859	-0.796	-0.0147	-0.8963	-0.0362	-0.8887	-0.0247	-0.6341	-0.6286	-0.811	-0.76393	0.0113	-0.3459	-0.6096	-0.3802	-0.0005	-0.4765	-0.3274	-0.84048	-0.4506	-0.0074	0.0056	-0.73815	-0.834	0.0253	-0.5793	-0.81515	-0.5997	-0.6106	-0.1973	-0.43514	-0.2051	-0.6611	-0.1348	-0.0147	-0.4805	-0.62694	-0.6664	-0.4841	-0.77342	-0.7264	-0.602	-0.4886	-0.6134	-0.605	-0.7107	-0.8423	-0.6442	-0.0274	-0.6368	-0.0019725	-0.3163	-0.8418	-0.4622	-0.8376	-0.7976	-0.5192	-0.1499	-0.5148	-0.46283	-0.4611	-0.4497	-0.7068	-0.4093	-0.3642	-0.8437	-0.0123	-0.5892	-0.0288	-0.6689	-0.5478	-0.8837	-0.4616	-0.0103	-0.8284	-0.3114	-0.6199	-0.6924	-0.0149	-0.78757	-0.4134	-0.4922	-0.6494	-0.7818	-0.6813	-0.4281	-0.87036	-0.6094	-0.2512	-0.23757	-0.4192	-0.7583	-0.0396	-0.0896	-0.0812	-0.6412	-0.4566	-0.6782	-0.3604	-0.0255	-0.4701	-0.4381	-0.4845	-0.5633	-0.63995	0.714	0.3532	-0.49	-0.5618	-0.56972	-0.6651	-0.5318	-0.55426	-0.8314	-0.5473	-0.3246	-0.499	-0.7579	-0.269	-0.6934	-0.65388	-0.34341	0.0073	-0.3997	-0.4047	-0.7054	-0.3451	-0.7593	-0.0042	0.533	-0.85865	-0.7695	-0.2229	-0.5576	-0.009	-0.7628	-0.80534	-0.8046	-0.6244	-0.6826	-0.8063	-0.463	
Harvard_standard_080606	Deletion Peak 5 - log2 ratios	10q23.31	chr10:89580501-89643513(probes 119734:119738)	chr10:89594690-89630076(probes 119735:119737)	chr10:1-135061898(probes 113702:123515)       	6.7464e-126	 6.7473e-126	broad	Actual Log2 Ratio Given	-0.0156	-0.9203	-1.3144	-0.9522	-0.8742	-0.7339	-0.4886	-0.9579	-0.6529	-0.629	-0.876	-0.5303	0.025036	-0.0338	-0.3828	-0.451	0.0006	-0.3218	-1.1125	-0.8186	-0.7239	-1.1745	-1.4552	-0.8447	-0.0174	-0.7335	-0.6254	-0.1197	-0.3148	-0.3071	0.3144	-0.0104	-0.52	-0.5137	-0.0277	-0.4711	-0.5671	-0.7769	-0.4313	-0.37807	-0.0062	-0.83775	-0.1794	-0.3463	-0.3521	0.0015	-0.5817	-0.631	-0.8247	-0.685	-0.6312	-0.1813	-0.3551	-0.21262	-0.0068	-0.199	-0.8119	-0.1281	-0.8911	-0.0362	-0.8913	-0.0138	-0.6434	-0.6292	-0.82	-0.7776	-0.8453	-0.3459	-0.6096	-0.3779	-0.0024	-0.5005	-0.3381	-0.8465	-0.4534	-0.0248	0.0142	-0.73455	-0.8391	-0.0573	-0.5896	-0.81466	-0.595	-0.6172	-0.2022	-0.45314	-0.216	-0.6618	-0.1348	-0.964	-1.4918	-0.62685	-0.6762	-0.4841	-0.7719	-0.7479	-0.5997	-0.4943	-0.6143	-0.5936	-0.7107	-0.8237	-0.6442	-0.0327	-0.6358	-0.0144	-0.3273	-0.8524	-0.4531	-1.0051	-0.7976	-0.5066	-0.1643	-0.5205	-0.46283	-0.4611	-0.44874	-0.709	-0.4093	-0.4038	-0.8472	-0.5599	-1.5203	-0.1589	-0.387	-0.5373	-0.88	-0.4616	-0.0055	-0.4253	-0.3114	-0.612	-0.6917	-0.0106	-1.6293	-0.4116	-1.2221	-1.4527	-1.4584	-0.6947	-0.4396	-0.8949	-0.6072	-0.27288	-0.26597	-0.4141	-0.7619	-0.088069	-0.1285	-0.5346	-0.64697	-0.4593	-0.6782	-0.3604	-0.0255	-0.4659	-0.4381	-1.253	-0.5947	-0.61715	-0.0453	0.0095	-0.486	-0.5785	-0.5736	-0.6651	-0.5318	-0.55426	-0.8234	-0.5634	-0.3246	-0.5071	-0.7969	-0.2829	-1.5687	-0.6583	-0.34341	-0.6269	-0.3997	-0.4104	-0.7139	-0.767	-0.7506	-0.0168	-0.0005	-0.8821	-0.7451	-0.2229	-0.1356	-0.0082	-0.7933	-0.8279	-0.8269	-1.4847	-0.66387	-0.7998	-0.66164	
Harvard_standard_080606	Deletion Peak 6 - log2 ratios	13q14.3 	chr13:50776362-51537463(probes 146636:146719)	chr13:51224460-51511557(probes 146680:146716)	chr13:1-113964305(probes 143610:150794)     	4.2723e-22	  4.2724e-22	broad	Actual Log2 Ratio Given	-0.562	0.0148	-0.5147	-0.9165	-0.8646	-0.2652	-0.7998	0.0061	-0.003	-0.0646	0.0157	-0.0574	-0.8065	0.0348	-0.625	0.0184	-0.874	-0.2584	-0.3861	0.0088	-0.0023	-0.3994	-0.0039	0.0049	-0.0017	0.0243	-0.5679	-0.3167	-0.3319	-0.0094	-0.0016	-0.0244	-0.4953	-0.2725	-0.4357	0.0012	0.0096	-0.0558	-0.3991	-0.37212	-0.3087	0.0162	-0.05595	0	0.006	-0.0019	0.0109	-0.6129	0.0071	-0.691	-0.5774	-0.0055	0.0163	-0.2117	-0.8491	-0.366	0.0189	-0.9623	0.005	0.0051	-0.0132	0.0035	0.1668	-0.056	0.0157	0.0075	0.0162	-0.3438	-0.0357	-0.3772	-0.0058	-0.4581	-0.0323	0.0046	0.0228	0.0046	-0.9536	0.0084452	-0.8243	0.0325	-0.062	-0.81726	-0.3539	0.0078	-0.1959	-0.0051435	-0.0434	-0.0865	-0.134	0.0014	-0.6167	-0.2607	0.019	-0.477	-0.0144	-0.733	-0.5845	-0.4724	-0.5043	-0.0299	-0.0241	0.0336	0.0043	0.0157	-0.2788	-0.0041	0.0114	-0.2719	-0.454	-0.0175	0	-0.7197	-0.144	-0.5112	0.0020731	-0.4427	-0.4601	0.020803	-0.10319	0.0035	-0.0165	-0.5604	-0.3818	-0.6692	0.003	-0.0505	0.0049	0.0145	0.0028	-0.8792	-0.0056	-0.3655	0.0044	-0.8537	-0.78144	-0.0777	-0.0146	0.0072	-0.0995	-0.6478	-0.4546	0.0077	0.0006	-0.7147	-0.2354	-0.0502	0.0097	-0.0311	-0.0065	-0.4414	-0.0078	0.0196	-0.0301	-0.3375	-0.006	0.013263	-0.0107	-0.4656	-0.5783	-0.61806	-0.6416	-0.0098	0.012697	-0.0585	-0.5431	0.0061	0.0056	-0.5489	0.0046	-0.5637	-0.3006	-0.4788	-0.0094	0.004	-0.4675	-0.6352	0.024495	-0.1153	-0.3929	-0.0421	-0.678	-0.3323	-0.798	-0.5835	-0.8439	0.0083	-0.7656	-0.0004	0.0124	-0.0035	0.0216	0.0151	0.0093	-0.5822	0	-0.0023	-0.6203	
Harvard_standard_080606	Deletion Peak 7 - log2 ratios	14q24.2 	chr14:71089282-72076479(probes 155051:155154)	chr14:71358479-71660450(probes 155076:155105)	chr14:1-103043790(probes 150796:157416)     	4.8441e-09	  4.8441e-09	broad	Actual Log2 Ratio Given	-0.0047	0.0022	0.0016	-0.9471	0	-0.7835	-0.8104	-0.0189	0.0225	-0.6393	-0.0333	-0.0030065	-0.7898	-0.2149	-0.3638	-0.0113	-0.001584	-0.032794	-0.3467	-0.0152	-0.0297	-0.382	-0.013	-0.0032996	-0.2169	-0.7231	0.0218	0.0047	-0.3136	-0.021674	-0.7463	-0.6461	0.00029977	0.0245	-0.4361	-0.0077	0.010853	-0.6242	0.1191	-0.0168	-0.6379	0.0134	-0.0479	-0.0121	-0.3432	0.0038	0.014	-0.6378	0.0982	-0.6683	-0.02	-0.1743	0.0121	-0.2105	-0.0127	-0.0194	0.0194	-1.1674	0.0315	-0.0947	-0.1349	-0.0026	-1.0355	0	0.0044247	-0.0443	-0.0051	-0.0319	-0.6048	-0.2946	0.0064	-0.4845	-0.3279	0.0002	-0.0101	-0.031809	-0.0324	-0.0099548	-0.0161	-0.8373	0.002	0.0037442	-0.5852	-0.0162	-0.2005	-0.00024353	-0.0417	-0.6515	-0.0462	-0.0318	0.0143	0.0146	0.0044	-0.5362	-0.0157	-0.0408	-0.6143	-0.0165	-0.056	-0.3796	0.0626	0.0132	0.0023	-0.0026	0.089904	-0.0104	-0.0157	0.0314	0.0166	-0.058	-0.0464	-0.6682	0	-0.0134	-0.40783	-0.0435	-0.0054	-0.00079736	0.0252	-0.0421	-0.0372	-0.0452	-0.5879	-0.1796	0.031	0.0014	-0.899	-0.0098	-0.0037	0.0114	-0.2574	-0.6229	-0.6994	0.0095	-0.0024443	-0.4125	-0.0098	-0.6215	-0.0124	0	0.0049	0.0083	0.0044	-0.4499	-0.24807	-0.0344	-0.0417	0	-0.0826	-0.4824	-0.0035	0.0052	0	0.1252	-0.014	-0.0406	0.0078	-0.0075	-0.008	0.006848	0.0097	0.0294	-0.0235	-0.0302	-0.0146	0.022272	-0.0042	0	-0.029	0.0037	-0.2874	-0.0025	0.0355	-0.2401	0.0308	-7.1302e-05	-0.38051	-0.5877	-0.0091	0.2179	-0.0201	-0.36358	0.21196	-0.092161	-0.858	-0.0008	-0.7569	-0.043	0.0246	-0.0031	0.0266	-0.8153	-0.0117	-0.622	-0.5808	0.0035	0.0526	
Harvard_standard_080606	Deletion Peak 8 - log2 ratios	15q15.1 	chr15:37995614-38330978(probes 158601:158642)	chr15:38001417-38136480(probes 158602:158619)	chr15:31049621-43106468(probes 157984:159169)	0.029832	    0.029832	broad	Actual Log2 Ratio Given	-0.3558	-0.92	-0.013	-0.0149	-0.0166	-0.0365	-0.8203	-0.0687	-0.0125	-0.6021	-0.0292	-0.0072	-0.828	0.1432	-0.62292	-0.0226	-0.0194	0.0155	-0.3798	-0.0341	-0.7209	0.0096	-0.0154	-0.017	-0.2073	-0.3273	-0.0139	-0.12852	0.0905	-0.0155	0	-0.021463	-0.0056	-0.0101	-0.028	-0.0152	-0.0108	-0.1974	0.1297	-0.0858	0.0042	-0.0033	-0.1723	-0.0125	-0.0087	-0.1472	-0.0123	-0.0094	-0.0178	0.0519	0.1223	-0.1687	-0.4194	-0.2097	-0.0286	-0.0985	-0.0128	-0.1609	-0.0391	-0.0375	-0.0947	-0.0134	-0.3225	-0.1044	-0.0053	-0.0213	-0.0129	-0.356	-0.1145	-0.0521	-0.0084	-0.0243	-0.0613	-0.0048	-0.0179	-0.0227	-0.0288	-0.012355	-0.0242	-0.0103	-0.5866	-0.0068558	-0.0022	-0.0236	0.0539	0.0013565	-0.0179	0.0382	0.0147	-0.0498	-0.0088	0.0081	-0.0456	-0.0514	-0.0401	-0.0504	-0.0023	-0.0265	-0.0262	-0.0002	-0.0475	-0.1481	-0.0217	-0.046	-0.7606	-0.0096	0.0042	-0.0447	-0.0181	0.0069	-0.0161	-0.1263	-0.0067	-0.5142	-0.0039269	0.0022	0.0269	0.027603	-0.0976	0.0065	0.0035	-0.3286	-0.0078	0.031	-0.1469	-0.6269	-0.0011	-0.0037	-0.0072	-0.1632	-0.0483	-0.2365	-0.0102	-0.0073	0.023156	-0.051062	-0.1117	-0.4921	-0.4976	-0.0201	-0.4206	-0.9549	0.0246	-0.4068	0.10893	0.0029	-0.0417	-0.0213	-0.0568	0.0113	0.0188	-0.0345	-0.0382	-0.3481	-0.1216	-0.0324	-0.0032	-0.013591	-0.5793	-0.001252	-0.0099	-0.498	-0.0103	-0.0726	-0.0256	-0.635	-0.0375	-0.0091	-0.032053	-0.555	0.0051	-0.36572	-0.001	-0.0372	-0.3233	-0.016933	-0.028305	0.0493	-0.0065	-0.0682	-0.0478	-0.0127	-0.0268	-0.0387	0.5482	-0.0077	-0.008	-0.0082	0.0266	-0.0113	-0.7858	-0.016298	-0.0241	-0.004	-0.0012	-0.8131	-0.5429	
Harvard_standard_080606	Deletion Peak 9 - log2 ratios	22q13.31	chr22:44173757-44583401(probes 195078:195120)	chr22:44206924-44503959(probes 195083:195110)	chr22:1-45440212(probes 193193:195158)       	5.3124e-13	  5.3125e-13	broad	Actual Log2 Ratio Given	-0.0232	-0.0755	-0.5386	-0.9848	-0.0433	-0.2149	-0.082	-0.0739	-0.1683	-0.5693	-0.0845	-0.0357	0.0012	-0.0128	-0.6047	-0.6904	-0.0445	-0.0479	-0.083	-0.0756	-0.0724	-0.358	-0.4586	-0.0538	-0.0549	-0.0014	-0.0389	-0.1416	0.0725	-0.1264	-0.0534	-0.1746	-0.0568	-0.018	0.3018	-0.0712	-0.0454	0.0903	-0.1247	-0.4209	-0.0754	-0.0275	-0.0383	-0.0354	-0.3803	-0.0175	-0.0537	-0.6493	-0.0607	0.049833	-0.741	-0.0345	-0.0694	-0.2113	-0.0326	-0.0507	-0.0869	-0.1258	-0.1037	-0.1349	-0.1931	-0.146	0.142	-0.1244	-0.0823	-0.0862	-0.0675	-0.3687	0.0496	-0.423	-0.452	-0.1077	-0.037	-0.8358	-0.059	-0.032	-0.0385	-0.041055	-0.9088	-0.0419	-0.0244	-0.014856	-0.0317	-0.0556	-0.191	-0.014644	-0.0468	-0.0063	-0.1278	-0.096	-0.0308	-0.6493	-0.0578	-0.5355	-0.0533	-0.7825	-0.6243	-0.5201	-0.611	-0.0434	-0.0586	-0.0732	-0.6587	-0.0629	-0.0966	-0.033	-0.0489	-1.0935	-0.0091	-0.9273	-0.0777	-0.6517	-0.1736	-0.0472	-0.46533	-1.111	-0.5012	-0.053797	0.1454	-0.0438	-0.895	-0.0641	-0.0804	-0.334	-0.6789	-0.0211	-0.8738	-0.0498	-0.7139	-0.2245	0.1764	-0.5062	-0.0209	-0.0128	-0.014144	0.0056	-0.0705	-0.0436	-0.2896	-0.1219	0.0386	-0.0609	0.0451	0.0239	0.090528	0.0426	-0.09	-0.0374	-0.1444	0.0653	-0.6234	-0.1	-0.707	-0.3125	-0.084465	-0.0698	0.0258	-0.0435	0.0068	-0.61255	-0.6037	0.0071	-0.0563	0.0338	-0.5488	-0.1365	-0.15076	-0.5705	-0.087	0.006	-0.2437	-0.5304	-0.086	-0.0143	-0.6912	-0.6832	-0.059705	-0.5117	-0.0264	0.1652	-0.1093	-0.3802	-0.7994	-0.163	-0.022	-0.0515	-0.7723	-0.0379	-0.5617	-0.0313	-0.6035	-0.0801	-0.0661	-0.0237	-0.001086	-0.0258	-0.3481	
Harvard_standard_080606	Amplification Peak  4- Contributing Broad Events	7p	Amplitude values represent median within significant region.	Broad Event Corresponding to Amplification Peak 4	chr7:1-158620917(probes 84371:95946)           	2.5306e-68	     0.1021	broad	0: t<0.12; 1: t>0.12	1	1	1	0	1	0	0	0	1	1	1	1	0	1	0	1	0	1	1	1	1	0	1	1	0	0	1	1	1	1	0	0	1	0	0	1	1	1	1	1	1	0	0	1	1	1	1	1	1	0	1	1	1	1	0	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	0	0	1	1	0	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	0	0	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	0	1	1	0	1	1	1	1	0	1	1	1	0	1	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	0	0	1	0	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	1	1	0	1	0	1	1	1	0	0	1	1	
Harvard_standard_080606	Amplification Peak  5- Contributing Broad Events	7p	Amplitude values represent median within significant region.	Broad Event Corresponding to Amplification Peak 5	chr7:1-158620917(probes 84371:95946)           	4.2499e-277	  4.25e-277	both	0: t<0.12; 1: t>0.12	1	1	1	0	1	0	0	0	1	1	1	1	0	1	0	1	0	1	1	1	1	0	1	1	0	0	1	1	1	1	0	0	1	0	0	1	1	1	1	1	1	0	0	1	1	1	1	1	1	0	1	1	1	1	0	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	0	0	1	1	0	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	0	0	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	0	1	1	0	1	1	1	1	0	1	1	1	0	1	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	0	0	1	0	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	1	1	0	1	0	1	1	1	0	0	1	1	
Harvard_standard_080606	Amplification Peak  6- Contributing Broad Events	7q	Amplitude values represent median within significant region.	Broad Event Corresponding to Amplification Peak 6	chr7:1-158620917(probes 84371:95946)           	4.1637e-92	 1.1749e-07	both	0: t<0.12; 1: t>0.12	1	1	1	0	1	0	0	0	1	1	1	1	0	1	0	1	0	1	1	1	1	0	1	1	0	0	1	1	1	1	0	0	1	0	0	1	1	1	1	1	1	0	0	1	1	1	1	1	1	0	1	1	1	1	0	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	0	0	1	1	0	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	0	0	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	0	1	1	0	1	1	1	1	0	1	1	1	0	1	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	0	0	1	0	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	1	1	0	1	0	1	1	1	0	0	1	1	
Harvard_standard_080606	Amplification Peak  9- Contributing Broad Events	19p	Amplitude values represent median within significant region.	Broad Event Corresponding to Amplification Peak 9	chr19:1-63558786(probes 180955:185436)         	3.389e-13	 3.3889e-13	broad	0: t<0.12; 1: t>0.12	0	0	0	0	1	0	0	0	1	1	1	1	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	1	0	1	1	0	1	1	1	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	1	1	0	0	0	0	0	1	0	0	0	0	1	1	0	1	0	0	0	1	0	0	0	1	1	0	1	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	1	0	0	1	1	1	1	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	1	1	1	0	1	0	0	1	0	0	0	1	1	1	1	0	0	0	0	
Harvard_standard_080606	Amplification Peak  10- Contributing Broad Events	20q	Amplitude values represent median within significant region.	Broad Event Corresponding to Amplification Peak 10	chr20:1-62379057(probes 185438:190275)          	3.757e-14	 3.7569e-14	broad	0: t<0.12; 1: t>0.12	0	0	1	0	0	0	0	0	1	1	1	0	0	1	0	0	0	0	0	1	1	0	1	0	0	0	0	1	1	1	0	0	0	1	1	0	0	0	0	1	0	1	1	0	1	0	1	0	0	0	1	0	1	1	0	0	1	0	0	1	1	0	0	1	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	1	1	1	1	0	1	1	0	1	0	1	1	0	1	1	1	0	1	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	1	1	1	1	1	0	0	0	0	1	0	0	1	0	1	1	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	1	1	1	0	0	0	0	1	0	0	0	0	0	0	1	1	0	1	1	0	1	0	0	0	0	0	1	1	0	0	0	0	
Harvard_standard_080606	Deletion Peak  2- Contributing Broad Events	6q	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 2	chr6:107314915-170737897(probes 79769:84369)	8.2881e-08	  8.2883e-08	broad	0: t>-0.12; 1: t<-0.12	0	1	0	1	0	0	0	1	0	0	1	1	0	0	0	1	0	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	1	0	0	1	0	0	1	0	0	1	1	0	0	0	0	1	0	0	0	1	0	1	1	0	1	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	1	1	0	0	0	1	0	0	0	1	0	0	1	0	0	0	1	0	1	0	0	1	0	0	0	
Harvard_standard_080606	Deletion Peak  3- Contributing Broad Events	9p	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 3	chr9:1-70238437(probes 105456:108194)           	7.4726e-284	 7.4727e-284	both	0: t>-0.12; 1: t<-0.12	0	0	0	0	1	1	0	1	1	1	0	0	1	0	0	1	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	1	0	1	1	0	1	1	1	0	0	1	1	1	1	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	1	0	0	1	1	0	1	0	1	0	1	0	0	1	0	0	1	0	0	1	1	0	1	1	1	0	1	1	0	1	0	1	0	0	0	0	1	1	1	0	0	0	0	0	1	1	1	1	0	1	1	1	0	0	1	1	0	1	0	1	0	0	0	0	0	0	1	1	0	1	1	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	1	1	0	0	1	0	0	0	1	0	0	0	1	1	0	1	0	0	1	1	1	0	1	0	0	0	1	0	0	1	0	0	0	
Harvard_standard_080606	Deletion Peak  4- Contributing Broad Events	10p	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 4	chr10:1-135061898(probes 113702:123515)       	2.3351e-85	     0.12656	broad	0: t>-0.12; 1: t<-0.12	0	1	1	1	1	1	1	0	0	1	1	1	0	0	1	1	0	1	1	1	1	1	1	1	0	1	1	0	1	1	0	0	1	1	0	1	1	1	1	1	0	1	1	1	1	0	1	1	1	0	1	1	0	1	0	1	1	0	1	0	1	0	1	1	1	1	1	1	1	1	0	1	1	1	1	0	0	1	1	0	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	0	1	1	1	1	0	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	1	1	1	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	1	1	1	1	0	1	1	1	1	1	1	1	
Harvard_standard_080606	Deletion Peak  5- Contributing Broad Events	10q	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 5	chr10:1-135061898(probes 113702:123515)       	6.7464e-126	 6.7473e-126	broad	0: t>-0.12; 1: t<-0.12	0	1	1	1	1	1	1	0	0	1	1	1	0	0	1	1	0	1	1	1	1	1	1	1	0	1	1	0	1	1	0	0	1	1	0	1	1	1	1	1	0	1	1	1	1	0	1	1	1	0	1	1	0	1	0	1	1	0	1	0	1	0	1	1	1	1	1	1	1	1	0	1	1	1	1	0	0	1	1	0	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	0	1	1	1	1	0	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	1	1	1	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	1	1	1	1	0	1	1	1	1	1	1	1	
Harvard_standard_080606	Deletion Peak  6- Contributing Broad Events	13q	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 6	chr13:1-113964305(probes 143610:150794)     	4.2723e-22	  4.2724e-22	broad	0: t>-0.12; 1: t<-0.12	0	0	1	1	0	1	1	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	1	1	1	0	0	0	1	1	1	0	0	0	1	1	0	0	0	0	0	0	0	1	0	1	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	1	0	0	0	0	1	1	0	1	0	0	0	1	0	1	1	0	1	0	1	1	1	1	0	0	0	0	0	1	0	0	1	1	0	0	1	0	0	0	1	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	1	1	1	0	0	1	1	0	0	0	0	1	1	0	1	1	0	1	0	0	0	0	0	0	1	0	0	0	
Harvard_standard_080606	Deletion Peak  7- Contributing Broad Events	14q	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 7	chr14:1-103043790(probes 150796:157416)     	4.8441e-09	  4.8441e-09	broad	0: t>-0.12; 1: t<-0.12	0	0	0	1	0	1	1	0	0	1	0	0	1	1	0	0	0	0	1	0	0	1	0	0	1	1	0	0	1	0	1	1	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	1	0	0	0	1	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0	0	1	1	0	1	1	0	0	0	0	0	0	1	0	0	1	0	1	0	0	1	0	0	0	0	0	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	1	1	0	0	0	1	0	1	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	1	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	1	1	0	0	
Harvard_standard_080606	Deletion Peak  8- Contributing Broad Events	15q	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 8	chr15:31049621-43106468(probes 157984:159169)	0.029832	    0.029832	broad	0: t>-0.12; 1: t<-0.12	1	1	0	0	0	0	1	0	0	1	0	0	1	0	1	0	0	0	1	0	1	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	1	1	1	0	0	0	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	1	0	1	0	0	0	0	0	1	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	
Harvard_standard_080606	Deletion Peak  9- Contributing Broad Events	22q	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 9	chr22:1-45440212(probes 193193:195158)       	5.3124e-13	  5.3125e-13	broad	0: t>-0.12; 1: t<-0.12	0	0	0	1	0	1	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	1	0	1	1	1	0	1	0	0	0	1	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	1	0	1	0	1	1	1	1	0	0	0	1	0	0	0	0	0	0	1	0	1	1	0	1	0	1	0	0	0	0	0	0	1	1	0	1	0	1	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	1	1	0	0	1	1	0	1	0	0	0	1	0	1	0	0	1	0	1	0	0	0	0	0	0	0	1	
Stanford_standard_080606	Amplification Peak 1	1q32.1 	chr1:202621172-202804270(probes 30116:30142)  	chr1:202621868-202719942(probes 30117:30134)  	chr1:201425596-203776864(probes 29860:30366)	1.4553e-12	  1.4553e-12	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	2	0	0	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	1	0	0	0	1	1	1	0	2	0	0	0	0	1	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	1	0	1	0	
Stanford_standard_080606	Amplification Peak 2	4q12   	chr4:54437171-54601117(probes 125532:125554)    	chr4:54480981-54526701(probes 125540:125550)    	chr4:48758630-57929057(probes 125196:126213)  	2.8546e-27	  2.8546e-27	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	1	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	1	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	1	0	0	2	0	0	1	0	2	1	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	1	0	0	0	0	2	0	0	0	0	1	0	0	
Stanford_standard_080606	Amplification Peak 3	7p15.1 	chr7:30458763-31142488(probes 220068:220260)    	chr7:30458763-30505175(probes 220068:220079)    	chr7:1-158612945(probes 213392:240523)         	3.0287e-50	     0.15003	broad	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	1	1	1	1	1	0	0	0	1	1	1	0	1	0	1	0	1	1	1	1	0	1	1	0	1	1	0	1	0	0	1	0	0	1	1	1	1	1	0	1	0	1	1	1	1	1	1	1	0	1	1	0	1	1	0	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	0	0	0	1	0	1	1	1	1	0	1	1	1	1	0	0	0	1	0	1	1	1	0	0	1	1	0	0	1	1	1	0	1	1	0	1	1	1	1	1	1	1	1	1	1	1	0	1	1	1	1	0	1	0	1	1	1	1	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	1	1	0	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	0	0	1	1	1	1	1	1	1	1	0	1	1	1	1	1	0	0	0	0	1	0	1	0	1	1	1	0	2	1	1	
Stanford_standard_080606	Amplification Peak 4	7p11.2 	chr7:54916732-55049911(probes 225211:225220)    	chr7:54916732-55034965(probes 225211:225219)    	chr7:1-158612945(probes 213392:240523)         	4.6143e-259	 4.6142e-259	both	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	1	2	1	1	2	0	0	0	1	2	2	0	1	0	1	0	1	1	1	2	0	2	2	0	1	1	0	1	0	0	2	2	1	1	2	1	1	1	0	2	0	1	1	1	2	1	2	2	0	1	1	0	1	2	0	2	1	2	1	1	2	2	2	2	0	1	1	1	1	1	2	1	0	0	2	2	0	1	1	1	2	0	2	2	2	2	2	0	0	1	2	2	2	2	0	0	2	2	0	0	2	1	2	2	1	2	2	1	1	0	1	2	1	2	1	1	1	1	0	2	2	1	2	2	1	0	1	1	1	1	1	1	2	2	1	2	1	1	2	0	1	1	1	1	1	2	2	0	2	1	0	1	2	2	1	2	2	0	1	1	1	1	2	0	0	2	2	2	2	1	1	1	2	0	1	1	1	1	2	0	2	0	0	2	0	1	0	2	2	2	2	2	2	1	
Stanford_standard_080606	Amplification Peak 5	7q36.1 	chr7:151748391-152192545(probes 239133:239180)	chr7:152051432-152175569(probes 239175:239178)	chr7:1-158612945(probes 213392:240523)         	3.4699e-51	  1.7451e-05	broad	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	1	1	1	0	1	0	0	1	1	1	1	0	1	1	1	0	0	1	1	1	0	1	1	0	1	1	0	1	0	0	1	0	0	1	1	1	1	1	1	2	0	1	1	1	1	1	1	1	0	1	1	0	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	0	1	0	0	1	1	0	1	1	1	1	0	0	1	1	1	0	0	0	1	0	1	1	1	0	0	1	1	0	0	1	1	1	1	1	1	0	0	1	0	1	1	0	1	1	0	1	1	0	1	1	1	1	1	1	0	1	1	1	1	1	1	1	0	1	1	1	1	0	1	1	1	1	1	1	0	1	0	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	0	0	1	1	1	1	1	1	1	1	0	1	1	1	1	0	0	0	0	1	1	0	1	0	1	1	1	0	0	1	1	
Stanford_standard_080606	Amplification Peak 6	8q11.1 	chr8:43545848-47389814(probes 249572:249578)    	chr8:43545848-47389814(probes 249572:249578)    	chr8:43545848-47406311(probes 249572:249580)  	0.073135	    0.073135	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	1	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	1	0	0	1	1	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	1	1	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_standard_080606	Amplification Peak 7	12q12  	chr12:33874676-36696953(probes 350820:350823)  	chr12:33874676-36696953(probes 350820:350823)  	chr12:33874676-36743815(probes 350820:350825)	9.711e-27	  3.1661e-23	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	1	0	0	0	1	0	0	0	1	1	1	0	1	0	1	1	1	0	0	1	0	1	1	1	0	1	1	1	1	1	0	1	1	0	1	1	1	1	0	0	1	0	1	0	0	1	0	1	0	1	0	1	1	0	0	0	0	1	1	0	0	1	0	1	0	1	0	0	1	0	0	0	0	0	1	0	1	1	0	1	1	0	0	0	0	0	1	0	1	0	1	1	1	1	1	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1	1	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	1	0	1	1	1	0	0	0	0	0	0	0	0	
Stanford_standard_080606	Amplification Peak 8	12q14.1	chr12:56373754-56540281(probes 353981:353987)  	chr12:56373754-56463558(probes 353981:353982)  	chr12:55923861-58161745(probes 353941:354238)	8.9524e-27	  2.4444e-23	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	1	2	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	2	0	1	0	1	0	2	0	0	0	0	0	0	0	0	0	2	2	0	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	1	2	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	1	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	
Stanford_standard_080606	Amplification Peak 9	12q14.1	chr12:59539753-59650781(probes 354404:354416)  	chr12:59569068-59602057(probes 354408:354409)  	chr12:59539753-59716564(probes 354404:354423)	0.00049178	     0.11545	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	1	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_standard_080606	Amplification Peak 10	12q14.2	chr12:62806074-62986026(probes 354988:355009)  	chr12:62831970-62893748(probes 354994:354999)  	chr12:62787796-62998032(probes 354987:355011)	0.00022392	      0.0702	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	1	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_standard_080606	Amplification Peak 11	12q14.3	chr12:65822927-66072693(probes 355552:355595)  	chr12:65872312-65946871(probes 355562:355566)  	chr12:65822927-66099523(probes 355552:355603)	0.00067032	     0.14111	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Stanford_standard_080606	Amplification Peak 12	12q15  	chr12:67467111-67552673(probes 355982:355990)  	chr12:67467111-67543708(probes 355982:355988)  	chr12:67041937-69054947(probes 355883:356380)	5.1495e-31	  5.1494e-31	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	1	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	2	1	0	0	0	2	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	2	2	0	0	2	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	
Stanford_standard_080606	Amplification Peak 13	19q12  	chr19:32615676-32836339(probes 464757:464765)  	chr19:32640703-32770984(probes 464758:464763)  	chr19:1-63558245(probes 461332:469700)         	1.3932e-41	  1.3932e-41	both	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	1	1	0	1	0	1	1	1	0	0	0	0	0	0	1	1	1	0	1	0	0	0	0	0	1	0	0	1	1	1	1	1	0	1	1	1	0	0	0	0	1	1	0	1	1	0	1	1	0	0	1	0	1	1	1	0	0	1	1	0	0	1	0	0	0	1	1	1	0	0	0	0	1	0	0	0	0	0	0	1	1	1	1	1	0	0	0	0	1	1	1	1	0	1	1	1	1	1	1	1	1	0	1	1	0	0	0	0	1	1	0	1	0	1	0	0	1	1	1	1	0	0	0	1	0	0	0	1	0	1	1	0	1	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	1	1	0	0	1	0	0	0	0	1	0	1	1	1	1	1	0	0	0	0	1	0	1	0	1	1	1	0	1	0	0	1	0	1	1	1	1	1	0	0	0	0	
Stanford_standard_080606	Amplification Peak 14	20q12  	chr20:39014002-39032414(probes 477427:477431)  	chr20:39017367-39028373(probes 477428:477430)  	chr20:1-62382906(probes 469702:483140)          	1.3393e-14	  1.3393e-14	broad	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	1	0	0	0	0	0	1	1	1	0	1	0	0	0	0	0	1	1	0	1	0	0	0	1	0	1	0	0	0	1	1	0	0	0	0	0	0	1	0	0	1	0	1	0	0	1	0	1	1	0	0	1	0	0	1	1	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	1	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	1	1	0	1	1	0	1	0	0	1	1	1	0	1	1	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	1	1	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	1	1	1	1	1	1	0	0	0	1	0	0	0	0	1	1	0	1	1	0	1	0	0	0	0	0	1	0	0	0	0	
Stanford_standard_080606	Deletion Peak 1	1p36.23 	chr1:7866852-8109797(probes 1149:1179)            	chr1:7922190-8018086(probes 1156:1166)            	chr1:7592601-9353809(probes 1111:1394)            	0.0029148	   0.0029148	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	1	1	1	0	0	1	0	0	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	1	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	1	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	
Stanford_standard_080606	Deletion Peak 2	1p33    	chr1:50959052-51235026(probes 7860:7875)        	chr1:51090594-51221588(probes 7869:7874)        	chr1:50931936-51235026(probes 7859:7875)        	0.037923	     0.21615	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	
Stanford_standard_080606	Deletion Peak 3	3q28    	chr3:192548087-192549937(probes 115486:115487)	chr3:192548087-192549571(probes 115486:115486)	chr3:192547223-192555921(probes 115485:115490)	0.00062629	  0.00062629	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	1	0	0	1	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	2	0	0	1	0	0	1	0	0	1	0	0	0	0	1	0	0	0	0	
Stanford_standard_080606	Deletion Peak 4	6q26    	chr6:163737902-163888570(probes 211759:211770)	chr6:163758785-163797746(probes 211761:211767)	chr6:108383052-170744033(probes 200660:213390)	2.6428e-06	  2.6428e-06	broad	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	1	0	1	0	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	1	0	0	1	1	0	0	0	0	0	0	1	0	1	0	1	0	0	1	0	0	0	0	0	1	1	1	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	1	0	0	1	0	0	0	1	0	0	1	0	0	0	0	1	0	0	1	0	0	0	
Stanford_standard_080606	Deletion Peak 5	9p21.3  	chr9:21964219-21996272(probes 273875:273882)    	chr9:21970152-21987871(probes 273876:273877)    	chr9:1-70233708(probes 267451:277237)             	6.2723e-289	 6.2722e-289	both	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	0	1	1	2	1	0	2	2	2	1	2	0	0	2	0	0	1	2	2	0	2	0	1	0	1	0	1	0	0	1	2	0	1	1	0	0	0	1	1	0	1	1	0	1	1	0	2	0	1	0	1	1	2	1	2	1	1	0	2	1	2	2	2	0	2	1	1	1	0	2	0	0	1	2	2	1	2	2	1	1	0	2	1	2	2	1	0	0	0	1	1	2	0	0	0	1	2	0	0	2	0	0	1	1	0	2	1	1	1	0	1	1	1	0	2	0	1	0	1	0	0	2	2	2	0	1	1	0	0	1	0	1	0	1	1	0	1	1	1	1	0	2	1	2	0	1	2	2	2	0	1	1	2	2	2	2	0	1	1	2	2	0	0	0	1	2	1	2	2	2	1	2	0	0	2	1	1	2	1	2	1	2	2	2	1	0	2	2	2	2	0	0	1	
Stanford_standard_080606	Deletion Peak 6	10q23.2 	chr10:89560230-89635452(probes 309087:309100)  	chr10:89589557-89596168(probes 309097:309097)  	chr10:1-135054788(probes 291852:318453)         	6.9087e-88	  6.9082e-88	both	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	1	1	1	1	1	1	1	1	1	1	0	0	1	1	0	1	1	1	1	1	2	1	0	1	0	1	1	0	0	1	1	0	1	1	1	1	1	0	1	1	1	1	0	1	1	1	1	0	1	1	0	0	1	0	1	0	1	0	1	1	1	1	1	1	1	1	0	1	1	1	1	0	0	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	1	1	0	0	1	1	1	0	1	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	0	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	1	1	1	0	1	1	1	1	0	2	1	1	2	2	1	1	0	1	1	2	1	1	0	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	0	1	1	0	0	1	1	1	2	1	1	1	
Stanford_standard_080606	Deletion Peak 7	11p15.4 	chr11:3129491-3136035(probes 318930:318933)      	chr11:3129491-3136035(probes 318930:318933)      	chr11:3129491-3136035(probes 318930:318933)      	0.24273	     0.24273	broad	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	1	0	1	1	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	1	0	0	1	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	
Stanford_standard_080606	Deletion Peak 8	13q14.3 	chr13:49279018-49828543(probes 375528:375602)  	chr13:49279018-49543164(probes 375528:375554)  	chr13:1-113962629(probes 368586:388335)       	3.2581e-21	  3.2581e-21	broad	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	0	1	1	0	1	1	0	0	0	0	1	0	1	0	1	1	1	0	0	1	0	0	0	1	1	1	0	0	0	1	1	1	0	0	0	1	1	0	0	0	0	0	0	0	1	0	1	0	0	1	1	1	0	1	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	1	0	1	0	1	0	0	1	1	0	1	1	1	0	0	0	1	0	1	0	0	0	0	0	0	1	0	1	0	0	1	1	0	1	0	1	1	1	1	0	0	0	0	0	0	0	1	0	0	1	1	0	0	1	0	1	0	1	1	1	1	0	0	0	0	1	1	1	1	0	0	0	0	0	1	0	1	0	1	2	0	0	0	0	0	1	0	0	0	1	1	1	1	0	0	0	0	1	0	1	1	0	0	1	0	1	0	1	1	1	1	1	0	0	0	0	0	0	0	1	0	1	1	
Stanford_standard_080606	Deletion Peak 9	14q23.3 	chr14:61976640-66678700(probes 396467:397242)  	chr14:65997232-66678700(probes 397200:397242)  	chr14:1-103049705(probes 388337:403851)       	1.2494e-06	  1.2494e-06	broad	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	1	0	1	1	0	0	1	0	1	1	1	0	0	1	1	0	0	1	0	0	1	0	0	1	0	1	1	0	0	1	0	0	1	0	0	1	0	0	0	1	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0	0	1	1	0	1	1	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	1	1	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	1	0	1	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	1	1	0	0	
Stanford_standard_080606	Deletion Peak 10	15q14   	chr15:32964800-36799870(probes 406016:406865)  	chr15:33754472-34530722(probes 406149:406359)  	chr15:32964800-36872247(probes 406016:406890)  	0.08735	     0.08735	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	1	0	0	0	0	1	0	0	1	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	1	1	0	1	0	0	0	0	1	1	0	1	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	
Stanford_standard_080606	Deletion Peak 11	22q13.31	chr22:44931686-49691432(probes 494745:494809)  	chr22:45035144-49691432(probes 494772:494809)  	chr22:20434874-45439639(probes 491286:494808)  	5.2069e-06	  5.2069e-06	broad	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	1	1	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	1	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	1	1	1	0	1	0	0	0	0	1	0	0	0	0	1	0	1	0	1	0	0	1	1	1	0	0	0	0	0	1	0	0	1	1	1	0	1	0	1	1	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	1	0	0	0	0	1	1	0	1	0	0	1	1	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	1	1	
Stanford_standard_080606	Amplification Peak 1 - log2 ratios	1q32.1 	chr1:202621172-202804270(probes 30116:30142)  	chr1:202621868-202719942(probes 30117:30134)  	chr1:201425596-203776864(probes 29860:30366)	1.4553e-12	  1.4553e-12	focal	Actual Log2 Ratio Given	0.0951	0.0002	0.0095	0.95802	0.0020053	0.045865	0.015181	0.2378	0.0081832	-0.0038	0.0065	0.1714	0.059925	0.0049	-0.0021586	0.2824	0.0233	0.0072	0.0031681	0.0026	0.020126	0.0076136	0.0065968	0.033481	0.0523	0.02517	0.047506	0.0118	-0.0017	0.0086725	0.0039306	0.017	-0.0071751	-0.00070845	0.7029	-0.0060013	-0.0047	0.0053592	0	0.0066963	-0.1235	0.0029	0.0196	-0.0028	-0.0049574	0.0208	0.0052	0.1121	0.0034	-0.0057	0.24099	-0.002	0.0079245	0.0020519	-0.0384	-0.007	0.2438	0.2185	0.0025	-0.0753	0.0112	-0.0018	-0.0206	-0.0087	-0.0062	-0.0171	-0.0083	-0.0043	0.3695	0.0057	-0.0062	-0.0010628	-0.0008	-0.0049	0.0004	0.2161	-0.0378	-0.0244	-0.0068295	-0.0026	0.1966	0.06641	0.0044539	-0.0041	0.0009	0.023733	0.0134	0.0447	0.0045	0.0345	0.006	0.2101	0.00075265	0.020399	0.0078731	0.0015	1.3167	0.2258	0.0116	0.0175	0.0016195	0.6985	0.13688	0.3915	0.016513	1.2443	0.00021847	0.0779	-0.0096	0.0483	0.199	-0.0011041	0.0208	0.025	0.015613	-0.0104	0.0333	0.1414	0	-0.0187	0.1957	0.033434	0.3304	0.0079938	0.0931	0.0080651	0.010254	-0.0067	0.20375	-0.0011	0.0085	0.0953	-0.0069634	0.11886	0.7469	-0.00028308	0.0445	0.0093	0.0083581	-0.0016	0.0638	0.0084449	0.0066	-0.0033	-0.0071	-0.0058	0.060572	0.0522	1.2009	-0.00195	0.0165	0.0031	0.0892	-0.0027	0.010432	0.0722	0.0171	0.032293	0.0082521	0	0.0293	0.0212	0.1082	0.2586	0.0276	0.0116	0.0112	0.018546	1.312	0.025263	0.0048	-0.0237	0.56888	-0.0455	0.020393	-0.04759	-0.0003	-0.0385	-0.0054	-0.0027	0.9675	0.01	0	-0.0254	-0.0123	-0.045755	0.4166	0.0029	-0.0046	0.1079	0.2484	0.0208	0.15848	-0.0022471	
Stanford_standard_080606	Amplification Peak 2 - log2 ratios	4q12   	chr4:54437171-54601117(probes 125532:125554)    	chr4:54480981-54526701(probes 125540:125550)    	chr4:48758630-57929057(probes 125196:126213)  	2.8546e-27	  2.8546e-27	focal	Actual Log2 Ratio Given	-0.015916	-0.0062	-0.0034	0.026191	0.0091	-0.0204	0.021262	0.9713	-0.010104	-0.0269	-0.0128	1.0982	-0.035718	-0.0104	0.0117	-0.0033	-0.0033	-0.0129	0.483	-0.0011558	-0.0382	0.0016981	0.0079	-0.004	0.0049	-0.071009	0.059006	-0.0328	0.0094	-0.2066	-0.0065	-0.0244	0.7681	-0.0018	-0.0193	1.2758	0.1548	0.5923	-0.0286	-0.0025	0	-0.0022	-0.0036	0.0064	-0.026408	0.2705	-0.0063	-0.0179	-0.0041	-0.0023	0.2414	0.0071977	0	-0.022075	0.0555	0.0277	0.0079	0.0036	0.0034	0.3325	0.2995	0.2712	0.0192	0.0385	0.0113	0.011328	0.042	0.0212	0.0325	0.0194	0.0115	0.0145	0.0102	0.9721	-0.0033584	0.023	-0.0667	0	1.2356	1.1809	0.0125	-0.019927	-0.006	0.0168	-0.0105	-0.0089671	-0.031	-0.0095	0.0052	0.0526	-0.027922	0.0007	-0.0020726	-0.0582	-0.0099	0	0.6813	-0.0022247	-0.0024	0.0155	-0.0134	-0.0062712	-0.18287	-0.0072	0.6348	-0.0072	0.02298	0.0184	0.0213	0.3225	-0.0027	-0.0044286	0.1547	0.3244	1.2124	0.019905	-0.0232	1.1219	-0.0019	0.022016	0.0467	-0.0094164	0.0081	-0.00079484	-0.0415	0.006	0.012754	0.0046	0.0861	-0.02029	-0.009	-0.0213	0.012237	-0.0444	0.3361	0.6294	-0.0101	0.8166	-0.010179	0.5924	-0.0147	-0.018155	1.1637	0.0013	0.0137	0.4255	0.1006	1.1948	0.3765	-0.0033	-0.17538	-0.0245	-0.0567	0.0067	-0.0259	-0.0053	0.1794	-0.018707	0.030245	-0.044314	0.9928	-0.0273	0.027278	-0.057	-0.055677	-0.045943	-0.0003	-0.018855	0.0107	0.012366	-0.0228	0.4631	-0.099023	-0.1469	-0.0233	-0.0271	0.0011	0.1303	0.0164	0.0198	0.0525	0.2199	-0.088884	0.0068	0.0201	-0.027455	1.3269	-0.0875	0.0098	0.1132	0	0.2309	-0.0955	0.0093529	
Stanford_standard_080606	Amplification Peak 3 - log2 ratios	7p15.1 	chr7:30458763-31142488(probes 220068:220260)    	chr7:30458763-30505175(probes 220068:220079)    	chr7:1-158612945(probes 213392:240523)         	3.0287e-50	     0.15003	broad	Actual Log2 Ratio Given	0.4089	0.2607	0.205	0.46052	0.2761	0.045151	0.0055621	0.01	0.2893	0.2802	0.2685	0.0152	0.14608	-0.0176	0.1614	0.0074	0.1642	0.173	0.2765	0.2332	0.0024	0.29681	0.2932	-0.0013	0.1462	0.3092	0.11231	0.1313	0.0068	0.0197	0.2245	-0.0018	-0.0254	0.2346	0.2403	0.21607	0.2887	0.1622	0.013356	0.3191	0.01099	0.1596	0.26143	0.2313	0.2253	0.24328	0.2812	0.3051	0.0879	0.1292	0.2454	-0.01	0.21242	0.2903	0	0.2746	0.4222	0.2739	0.392	0.1315	0.1698	0.2634	0.1891	0.4388	0.053	0.2633	0.1796	0.1688	0.1945	0.1711	0.2688	0.17347	0.0167	0	-0.0077	0.2657	0.0203	0.2393	0.19857	0.2257	0.20949	0.1141	0.2393	0.1942	0.2731	0.25483	0.0122	0.0426	0.0075	0.1848	0.090457	0.2466	0.2584	0.2161	0.0226	0.078825	0.2306	0.2388	0.0115	0.0914	0.2689	0.388	0.1397	0.0004	0.22035	0.2588	0.015001	0.678	0.1961	0.2517	0.1873	0.17773	0.1885	0.2437	0.24604	0.2175	0.1996	0.3109	0.0044	0.1311	0.2695	0.4685	0.2393	-0.0018	0.1692	0.0741	0.16635	0.1743	0.2914	0.2023	0.1391	0.3365	0.0028366	0.1633	0.1434	0.1886	0.3424	0.1866	0.0011581	-0.0634	0.27779	0.24094	0.3401	0.1636	0.2591	0.2042	0.294	-0.1608	0.4637	0.269	0.0364	0.3634	0.2208	0.23865	0.2643	0.2822	0.0018674	-0.004007	0.2156	0.20749	0.2279	0.2534	0.20754	-0.0878	-0.0369	0.3608	0.2311	0.22495	0.2883	0.33677	0.27136	0.2085	0.25968	0.1188	0.3176	0.19699	0.179	0.3909	0.2582	0.0062	-0.0026	-0.2148	0.0013	0.3035	0.039845	0.19524	0.0041	0.3064	0.4452	0.3018	-0.042676	0.9361	0.24422	0.20645	
Stanford_standard_080606	Amplification Peak 4 - log2 ratios	7p11.2 	chr7:54916732-55049911(probes 225211:225220)    	chr7:54916732-55034965(probes 225211:225219)    	chr7:1-158612945(probes 213392:240523)         	4.6143e-259	 4.6142e-259	both	Actual Log2 Ratio Given	0.4089	1.3157	0.21	0.46052	1.4654	0.045151	0.0055621	-0.0072	0.28649	1.2716	1.4515	0.0152	0.22766	-0.0176	0.1595	-0.001	0.1548	0.1647	0.2678	1.4296	0.0162	1.4255	1.4006	0.0003	0.1408	0.31783	0.11231	0.1356	0.0068	0.0102	1.406	1.4844	0.3034	0.2346	1.4879	0.22216	0.2763	0.1622	0.0077	1.3494	0.0091	0.1596	0.2587	0.2313	1.4449	0.2177	1.4994	1.0554	0.1075	0.1292	0.2315	0.0026	0.20162	1.3393	0	1.2714	0.4222	1.1671	0.392	0.1315	1.1099	1.2355	1.0841	1.1437	0.053	0.2633	0.1796	0.1688	0.1945	0.1711	1.2084	0.1845	0.0167	0.0114	1.1462	1.2591	0.0203	0.6395	0.19857	0.2257	1.2392	0.1141	1.3841	0.9271	1.3897	1.4992	1.1438	0.0426	0.0075	0.1848	1.1227	1.4832	1.4859	1.186	0.0226	0.0695	1.4984	1.4428	0.0115	0.0914	1.4177	0.388	1.292	1.3406	0.22035	1.3178	1.1329	0.2468	0.1961	0.0907	0.1873	1.2115	0.1885	1.0987	0.51909	0.2175	0.1996	0.3109	-0.0021	1.001	1.2264	0.3596	1.0889	1.2292	0.168	0.0741	0.16635	0.542	0.2914	0.2023	0.1391	0.3365	1.0176	1.2823	0.1385	1.1495	0.3424	0.8701	0.97856	-0.040872	0.8542	0.24094	0.2399	0.1636	0.2591	1.1232	1.2999	-0.1608	1.2659	0.269	0.0364	0.3634	1.242	1.1563	0.26963	1.48	1.4466	0.022435	0.2156	0.20749	0.23398	0.2534	1.2386	-0.0121	0.0125	1.414	1.4909	1.4501	1.3716	0.44717	0.27136	0.7601	1.5236	-0.8338	0.3176	0.19699	0.179	0.3909	1.1221	0.0062	1.2771	-0.2148	-0.5451	0.9811	0.039845	0.19524	0.0041	1.5174	1.2927	1.6053	1.2153	0.9172	1.2051	0.20645	
Stanford_standard_080606	Amplification Peak 5 - log2 ratios	7q36.1 	chr7:151748391-152192545(probes 239133:239180)	chr7:152051432-152175569(probes 239175:239178)	chr7:1-158612945(probes 213392:240523)         	3.4699e-51	  1.7451e-05	broad	Actual Log2 Ratio Given	0.4089	0.2594	0.2054	-0.048783	0.2402	0.0066	0.010762	0.2426	0.29007	0.3319	0.2677	-0.1622	0.22766	0.3535	0.1606	0.0058	0.1174	0.1644	0.2755	0.23693	0.0906	0.26031	0.2725	-0.0009	0.1384	0.3189	0.11231	0.1356	0.0068	-0.0007	0.222	0.0774	-0.0185	0.2248	0.2226	0.20548	0.2763	0.1588	0.4772	1.4616	0.007758	0.162	0.2562	0.2126	0.2255	0.2215	0.2791	0.4818	0.0915	0.1585	0.2172	0.0026	0.20242	0.2849	0.2947	0.2777	0.4274	0.2675	0.4024	0.0867	0.3233	0.2556	0.2342	0.4408	0.6187	0.2591	0.1535	0.1766	0.2037	0.17485	-0.0025	0.1811	0.0167	0.0114	0.2359	0.2796	0.0203	0.259	0.18651	0.2245	0.2238	0.1144	0.0035	0.1969	0.2785	0.26343	0.0182	0.052	-0.0235	0.1848	0.1151	0.3259	0.2531	0.21423	0.0306	0.0902	0.2349	0.2433	0	0.0914	0.2705	0.4051	0.13768	0.2199	0.216	0.24998	0.0097185	0.071	0.17	0.0669	0.20254	0.1773	0.0561	0.2413	0.23949	0.0893	0.1903	0.3222	0.0378	0.1239	0.2714	0.3676	0.2415	0.2167	0.1659	0.0648	0.17106	0.1803	0.2896	0.2203	0.1412	0.31856	0.19464	0.114	0.1423	0.1892	0.275	0.1933	-0.00034186	0.1908	0.2859	0.24374	0.252	0.1552	0.2484	0.1078	0.2926	-0.1079	0.4684	0.2615	0.0256	0.3585	0.2016	0.251	0.2635	0.2943	0.0124	0.022435	0.15236	0.20749	0.244	0.2771	0.2351	-0.007	0.081765	0.3777	0.3094	0.26685	0.27701	0.44717	0.28016	0.1998	0.47828	0.1088	0.3386	0.19699	0.1863	0.1669	-0.0008	0.0082	-0.0038	-0.2161	0.2947	0.3459	0.0384	0.19274	0.0064	0.1917	0.4223	0.3145	-0.047	0.0846	0.235	0.20645	
Stanford_standard_080606	Amplification Peak 6 - log2 ratios	8q11.1 	chr8:43545848-47389814(probes 249572:249578)    	chr8:43545848-47389814(probes 249572:249578)    	chr8:43545848-47406311(probes 249572:249580)  	0.073135	    0.073135	focal	Actual Log2 Ratio Given	-0.1853	0.0014	0.2281	0.0074173	-0.0035	0.034	0.0090621	-0.0016	-0.0068168	-0.0043	0.001	0.0356	-0.098818	-0.0085	0.0063	0	0	-0.002	0.2815	0.0053	0	-0.0024864	0.0047135	-0.0012	-0.0027	-0.0443	0.13901	0	-0.0012	0.0128	-0.0005	-0.0315	-0.031238	0.0001	-0.0216	0.0736	0.1685	0.0063842	0.2196	-0.0056	0.1202	-0.0006	-0.1948	0.2652	0	0.0001	0.0023	-0.0275	0.1851	0.2902	0.0042	-0.0126	-0.22483	-0.0009	0.0070748	0.2167	0.0016	0.013	0.0213	-0.0414	0.1851	0.0141	0.0088	0.0182	0.1923	0.1793	0.0809	0.0118	0.2663	0.1901	0.211	0.0073	0.038195	0.013139	0.0052	0.0039	0.0202	0.0147	0.0073705	0.2048	-0.0122	0.2294	-0.0036	0	-0.0057	-0.0093878	-0.0028	0.0424	-0.0152	-0.0316	-0.011377	0.2206	-0.0035	0.0134	-1e-04	0.003466	0.32499	-0.01919	0.3089	-0.0093	0.1651	0.2342	-0.0519	-0.0046031	-0.0161	0.1465	0.0012509	0.007318	0.0044	0.0007	0.2218	0.0013	-0.19827	-0.0343	0.005794	0.0017	-0.0036833	0.1301	-0.1458	0.2399	0.0177	-0.0073	-0.0001	-0.0098856	0.0167	-0.0297	-0.022246	0.0085	-0.2065	-0.0008	-0.0073083	-0.03292	0.0040366	0.11054	0.0023	0.042945	0.0009	0.1876	-0.0029421	0.014796	0.0184	0.13834	0.0017	0.0086	0.0061	0.0157	0.0873	-0.1018	0.0072	0.1758	0.0291	0	0.028116	-0.0068	0.0017	0.0075	-0.2722	0.0046669	0.010061	-0.01382	0.0033	0	-0.01061	-0.0306	-0.0252	-0.0029	0.031264	0.020646	0.0054	-0.56013	0.0054	-0.0014	-0.050923	0.0885	-0.0013	-0.0857	0.0008	-0.0388	0.0139	0.0086	0.233	0.1208	-9.9994e-05	0.0089	0.0075	-0.16533	0.0016	-0.2164	0.01	0.0042	0.0055747	0.0394	-0.0439	0.00031305	
Stanford_standard_080606	Amplification Peak 7 - log2 ratios	12q12  	chr12:33874676-36696953(probes 350820:350823)  	chr12:33874676-36696953(probes 350820:350823)  	chr12:33874676-36743815(probes 350820:350825)	9.711e-27	  3.1661e-23	focal	Actual Log2 Ratio Given	0.1455	-0.0026	0.2506	0.015187	0.0025	0.025476	0.015612	0.0074	0.0049451	0.0056	0.004	0.5606	-0.022618	0.0010198	0.0049451	0.0072	-0.0125	0.2023	0.0015	0.0043	0.0135	0.00071359	0.0088	-0.0017289	0.0073	0.1699	-0.15149	0.0003	0.0319	0.0137	0.3172	-0.0059	0.3344	0.2386	-0.0949	0.064433	-0.2492	0.3012	0.0059	-0.0041917	0.0239	0.2409	0.2783	0.4859	-0.004958	0.3164	-0.513	0.5137	0.2377	0.4654	-0.13405	0.0049042	0.28372	0	0.4692	0.2388	0.7494	-0.0139	0.6217	0.2871	0.323	0.4684	0.4653	-0.0057	0.2981	0.2865	0	0.3473	0.4197	0.3416	0.3256	-0.0139	0.0114	0.305	-0.012023	0.2652	-0.0072	-0.0168	0.32117	-0.0131	0.2809	-0.0261	0.2338	0.0026	0.2553	0.19033	-0.0070263	0.0026523	0.0531	0	0.3163	0.3353	0.0047145	-0.0072038	0.2075	0.013292	0.3528	0.0085	0.4607	-0.0213	-0.0466	0.2401	0.0078	0.0060947	0.0275	-0.0023	0.00091847	0.1895	0.0324	0.2249	0.2938	0.0028	0.2445	0.3785	-0.0073093	-0.0414	-0.0040702	0.1039	-0.2455	0.3826	0.0211	0.1591	0.0030209	0.23133	0.24	0.5152	0.16995	0.2689	-0.6772	-0.2045	0.2164	0.0043	0.43614	-0.0078666	-0.0009	0	-0.029519	0.2	-0.32594	-0.0639	-0.1409	0.014445	0	-0.0131	0.258	0.0149	0.072	-0.082	0.2236	0.4814	-0.1859	-0.0276	-0.0092	0.2621	0	-0.0068568	0.221	0.27279	0.016901	-0.014818	-0.0042	-0.026	-0.0592	-0.010249	-0.021337	0.2724	0.2641	-0.017654	0.0031	0.012466	0	0.0121	-0.062923	-0.4715	-0.0075	0	0.3212	-0.3211	0.3051	0.2513	0.0981	0.4536	-0.0171	0.2005	0.242	0.46174	-0.0083	0.0052	-0.0127	0.0014	-0.036215	0.0055763	-0.199	0.006741	
Stanford_standard_080606	Amplification Peak 8 - log2 ratios	12q14.1	chr12:56373754-56540281(probes 353981:353987)  	chr12:56373754-56463558(probes 353981:353982)  	chr12:55923861-58161745(probes 353941:354238)	8.9524e-27	  2.4444e-23	focal	Actual Log2 Ratio Given	0.1455	1.1836	1.2078	0.015187	0.0025	0.025476	0.015612	0.0074	0.0049451	-0.030234	0.004	0.2929	-0.022618	0.0010198	0.0049451	0.0072	-0.0125	-0.0484	0.0015	0.0043	0.0135	0.00071359	1.3021	0.0027	0.0073	0.1699	-0.15149	0.0003	0.0319	1.0045	0.0029	0.1431	0	0.2386	-0.2033	0.9877	-0.2492	-0.0197	0.0059	-0.0041917	-0.39183	0.0025933	0.0028933	-0.1689	-0.004958	1.0292	1.0837	-0.0132	0.3962	-0.0114	-0.13405	0.0049042	0.0066831	0	-0.0095	-0.0036	0.6794	-0.0139	0.2605	0	-0.0125	-0.0061	-0.017	-0.0057	-0.0154	0.0661	0	-0.0098	0.0003	0.6607	-0.0137	-0.0139	-0.0055174	-0.0075	-0.012023	-0.0057	-0.0072	-0.0154	-0.0038295	-0.0131	-0.0155	-0.0261	0.0084238	-0.0107	0.011	0.0082329	-0.0070263	1.1509	0.624	0	0.0043	-0.0128	0.0047145	0.9462	0.0121	0.013292	0.016	0.8343	-0.1489	-0.0213	-0.0466	-0.1017	-0.05812	0.0059	0.0206	1.0104	0.00091847	0.9448	0.0324	0.0239	-0.002754	0.0028	0.023819	0.4865	0.94319	0.0223	-0.0040702	1.199	-0.9854	-0.0088	0.7631	-0.246	0.0030209	0.024332	0.0219	0.014141	-0.096246	-0.0184	-0.0233	-0.1937	-0.0020652	0.0043	0.0071366	-0.0078666	-0.0009	0	-0.0024944	0.0019	0.19596	0.6631	-0.1409	0.87124	0	-0.0131	-0.0107	0.7476	0.7716	-0.086	0.4101	-0.0114	-0.1859	-0.0276	-0.0092	0.0039	0	-0.0068568	0.221	0.015393	0.016901	-0.014818	-0.0042	0.0102	-0.0592	-0.010249	0.0236	-0.012131	0.014745	-0.00045417	0.011191	-0.010334	-0.014545	0.0121	0.040077	0.0106	-0.01	0.0205	-0.0042	-0.0366	-0.0125	-0.0059	-0.174	0.0047	-0.0171	0.2557	-0.0092	-0.049055	-0.0083	0.0052	-0.0127	0.0014	-0.036215	-0.012	-0.199	0.006741	
Stanford_standard_080606	Amplification Peak 9 - log2 ratios	12q14.1	chr12:59539753-59650781(probes 354404:354416)  	chr12:59569068-59602057(probes 354408:354409)  	chr12:59539753-59716564(probes 354404:354423)	0.00049178	     0.11545	focal	Actual Log2 Ratio Given	0.1455	-0.0019	1.242	0.015187	0.0025	0.025476	0.015612	0.0074	0.0049451	-0.030234	0.004	0.2929	-0.022618	0.0010198	0.0049451	0.0072	-0.0125	-0.0484	0.0015	0.0043	0.0135	0.00071359	-0.5729	0.0027	0.0073	0.1699	-0.15149	0.0003	0.0319	0.7771	0.0029	-0.0635	0	0.2386	-0.2033	0.0675	-0.2492	-0.0197	0.0059	-0.0041917	-0.39183	0.0025933	0.0028933	-0.1689	-0.004958	0.2983	-0.5706	-0.0132	0.0065	-0.0114	-0.13405	0.0049042	-0.00037552	0	-0.0095	-0.0036	-0.4549	-0.0139	0.2605	0	-0.0125	-0.0061	-0.017	-0.0057	-0.0154	0.0661	0	-0.0098	0.0003	-0.0043	-0.0137	-0.0139	-0.0055174	-0.0075	-0.012023	-0.0057	-0.0072	-0.039509	-0.0038295	-0.0131	-0.0155	-0.0261	0.0084238	-0.0107	0.011	0.0082329	-0.0070263	-0.0043	-0.5736	0	0.0043	-0.0128	0.0047145	-0.3747	0.0121	0.013292	0.016	0.0003	-0.1489	-0.0213	-0.0466	-0.1017	-0.0376	0.0059	0.0206	-0.0048	0.00091847	0.9762	0.0324	0.0239	-0.002754	0.0028	0.023819	1.4803	0.94809	0.0223	-0.0040702	1.4594	0.0037	-0.0088	-0.4749	-0.246	0.0030209	0.01738	0.0219	0.014141	-0.096246	-0.0184	-0.0233	-0.1937	-0.0020652	0.0043	0.0071366	-0.038	-0.0009	0	-0.0024944	0.0019	0.185	-0.0799	-0.1409	0.0014449	0	-0.0131	-0.0107	-0.0143	0.085217	-0.086	0	-0.0114	-0.1859	-0.0276	-0.0092	0.0039	0	-0.0068568	0.221	0.015393	0.016901	-0.014818	0.006	0.0102	-0.0592	-0.010249	0.0236	-0.012131	0.014745	-0.00045417	0.011191	-0.010334	-0.014545	0.0121	0.040077	0.0106	-0.01	0.0205	-0.0042	-0.0366	-0.0125	-0.0059	-0.174	0.0047	-0.0171	-0.0082	-0.0092	-0.049055	-0.0083	0.0052	-0.0127	0.0014	-0.036215	-0.0667	-0.199	0.006741	
Stanford_standard_080606	Amplification Peak 10 - log2 ratios	12q14.2	chr12:62806074-62986026(probes 354988:355009)  	chr12:62831970-62893748(probes 354994:354999)  	chr12:62787796-62998032(probes 354987:355011)	0.00022392	      0.0702	focal	Actual Log2 Ratio Given	0.1455	-0.0019	-0.3431	0.015187	0.0025	0.025476	0.015612	0.0074	0.0049451	-0.030234	0.004	0.2929	-0.022618	0.0010198	0.0049451	0.0072	-0.0125	-0.0484	0.0015	0.0043	-0.0505	0.00071359	0.005	0.0027	0.0073	0.1699	-0.15149	0.0003	0.0319	0.8267	0.0029	-0.034589	0	0.2386	-0.2033	0.0675	-0.2492	-0.0197	0.0059	-0.0041917	-0.39183	0.0025933	0.0028933	-0.1689	-0.004958	1.1851	-0.5792	-0.0132	0.0065	-0.0114	-0.13405	0.0049042	-0.00037552	0	-0.0095	-0.0036	-0.4549	-0.0139	0.2605	0	-0.0125	-0.0061	-0.017	-0.0057	-0.0154	0.0661	0	-0.0098	0.0003	-0.0043	-0.0075778	-0.0139	-0.0055174	-0.0027476	-0.012023	-0.0057	-0.0072	-0.039509	-0.0038295	-0.0131	-0.0155	-0.0261	0.0084238	-0.0107	-0.0013217	0.0082329	-0.0070263	-0.0043	-0.5655	0	0.0043	-0.0128	0.0047145	-0.0603	0.0121	0.013292	0.016	0.0003	-0.1489	-0.0213	-0.0466	-0.1017	1.301	0.0059	0.0206	-0.0048	0.00091847	0.8921	0.0324	0.0239	-0.002754	0.0028	0.0137	-0.0244	0.80269	0.0223	-0.0048	1.2956	0.0037	-0.0088	1.1698	-0.246	0.0030209	0.01738	0.0219	0.014141	-0.096246	-0.0086	-0.0233	-0.1937	-0.0020652	0.0043	0.0071366	-0.038	-0.0009	0	-0.0024944	0.0019	0.185	-0.0791	-0.1409	0.0014449	0	-0.0131	-0.0107	-0.0143	0.085217	-0.086	0	-0.0114	-0.1859	-0.0276	-0.0092	0.0039	0	-0.0068568	0.221	0.015393	0.016901	-0.014818	0.006	0.0102	-0.0592	-0.010249	0.0236	-0.012131	0.014745	-0.00045417	0.011191	-0.010334	-0.014545	0.0121	0.040077	0.0106	-0.01	0.0205	-0.0042	-0.0366	-0.0125	-0.0059	-0.174	0.0047	-0.0171	-0.0082	-0.0092	-0.049055	-0.0083	0.0052	-0.0127	0.0014	-0.036215	-0.0667	-0.199	0.006741	
Stanford_standard_080606	Amplification Peak 11 - log2 ratios	12q14.3	chr12:65822927-66072693(probes 355552:355595)  	chr12:65872312-65946871(probes 355562:355566)  	chr12:65822927-66099523(probes 355552:355603)	0.00067032	     0.14111	focal	Actual Log2 Ratio Given	0.1455	-0.0019	0.0052	0.015187	0.0025	0.025476	0.015612	0.0074	0.0049451	-0.030234	0.004	0.2929	-0.022618	0.0010198	0.0049451	0.0072	-0.0125	-0.0484	0.0015	0.0043	-0.0505	0.00071359	0.005	0.0027	0.0073	0.1699	-0.15149	0.0003	0.0319	0.9545	0.0029	-0.034589	0	0.2386	-0.2033	0.0675	-0.2492	-0.0197	0.0059	-0.0041917	-0.39183	0.0025933	0.0028933	-0.1689	-0.004958	-0.3619	-0.504	-0.0132	0.0065	-0.0114	-0.13405	0.0049042	-0.00037552	0	-0.0095	-0.0036	-0.4549	-0.0139	0.2605	0	-0.0125	-0.0061	-0.017	-0.0057	1.0527	0.0661	0	-0.0098	0.0003	-0.0043	-0.0075778	-0.0139	-0.0055174	-0.0027476	-0.012023	-0.0057	-0.0072	-0.039509	-0.0038295	-0.0131	-0.0155	-0.0261	0.0084238	-0.0107	-0.0013217	0.0082329	-0.0070263	-0.0043	-0.5681	0	0.0043	-0.0128	0.0047145	-0.4062	0.0121	0.013292	0.016	0.0003	-0.1489	-0.0213	-0.053725	-0.1017	-0.4422	0.0059	0.0206	-0.0048	0.00091847	0.8699	0.0324	0.0239	-0.002754	0.0028	0.0137	-0.0153	-0.60931	0.0223	-0.0048	1.3168	0.0037	-0.0088	0.8714	-0.246	0.0030209	0.8105	0.0219	0.014141	-0.096246	-0.0086	-0.0233	-0.1937	-0.0020652	0.0043	0.0071366	-0.038	-0.0009	0	-0.0024944	0.0019	-0.33214	-0.0791	-0.1409	0.0014449	0	-0.0131	-0.0107	-0.0143	0.085217	-0.086	0	-0.0114	-0.1859	-0.0276	-0.0092	0.0039	1.3878	-0.0068568	0.221	0.015393	0.016901	-0.014818	0.006	0.0102	-0.0592	-0.0837	0.0236	-0.012131	0.014745	-0.00045417	0.011191	-0.010334	-0.014545	0.0121	0.040077	0.0106	-0.01	0.0205	-0.0042	-0.0366	-0.0125	-0.0059	-0.174	0.0047	-0.0171	-0.0082	-0.0092	-0.049055	-0.0083	0.0052	-0.0127	0.0014	-0.036215	-0.0667	-0.199	0.006741	
Stanford_standard_080606	Amplification Peak 12 - log2 ratios	12q15  	chr12:67467111-67552673(probes 355982:355990)  	chr12:67467111-67543708(probes 355982:355988)  	chr12:67041937-69054947(probes 355883:356380)	5.1495e-31	  5.1494e-31	focal	Actual Log2 Ratio Given	0.1455	-0.0019	1.1175	0.015187	0.0025	0.025476	0.015612	0.0074	0.0049451	-0.030234	0.004	0.2929	-0.022618	0.0010198	0.0049451	0.0072	-0.0125	-0.0484	0.0015	0.0043	1.0304	0.00071359	0.0132	0.0027	1.4568	0.1699	-0.15149	0.0003	0.0319	0.9545	0.0029	-0.034589	0	0.2386	1.3377	0.0675	-0.2492	-0.0197	0.0059	-0.0041917	-0.39183	0.0025933	0.0028933	-0.1689	-0.004958	1.1577	1.4845	-0.0132	0.0065	-0.0114	-0.13405	0.0049042	-0.00037552	0	-0.0095	-0.0036	-0.4549	-0.0139	0.2605	0	-0.0125	-0.0061	-0.017	-0.0057	0.9634	0.0661	0	-0.0098	0.3779	-0.0043	-0.0075778	1.0692	-0.0055174	-0.0027476	-0.012023	-0.0057	-0.0072	-0.039509	-0.0038295	-0.0131	-0.0155	-0.0261	0.0084238	-0.0107	-0.0013217	0.0082329	-0.0070263	-0.0043	0.0179	0	0.0043	-0.0128	0.0047145	1.0574	0.0121	0.013292	0.016	0.0003	-0.1489	-0.0213	-0.053725	-0.1017	1.3357	0.0059	0.0206	-0.0048	0.00091847	0.9382	0.0324	0.0239	-0.002754	0.0028	0.0137	1.2545	1.0796	0.0223	-0.0048	1.2593	0.0037	-0.0088	1.0798	-0.246	0.013586	1.2217	0.0219	0.014141	-0.096246	-0.0086	-0.0233	-0.1937	-0.0020652	0.0043	0.0071366	1.2336	-0.0009	0	-0.0024944	0.5198	0.010158	-0.0648	-0.1409	0.0014449	0	-0.0131	-0.0107	-0.0143	0.085217	-0.086	0	-0.0114	-0.1859	-0.0276	-0.0092	0.0039	1.2715	-0.0068568	0.221	0.015393	0.016901	-0.014818	0.006	0.0102	-0.0592	-0.0837	0.0236	-0.012131	0.014745	-0.00045417	0.011191	-0.010334	-0.014545	0.0121	0.040077	0.0106	-0.01	0.0205	-0.0042	-0.0366	-0.0125	-0.0059	-0.174	0.0047	-0.0171	-0.0082	-0.0092	-0.049055	-0.0083	0.0052	-0.0127	0.0014	-0.036215	1.1719	-0.199	0.006741	
Stanford_standard_080606	Amplification Peak 13 - log2 ratios	19q12  	chr19:32615676-32836339(probes 464757:464765)  	chr19:32640703-32770984(probes 464758:464763)  	chr19:1-63558245(probes 461332:469700)         	1.3932e-41	  1.3932e-41	both	Actual Log2 Ratio Given	0.038732	-0.0053	0.0309	0.24164	0.2281	0.0095899	0.21466	0.0098	0.31468	0.1925	0.2662	0.028192	0.10698	0.11214	-0.0328	-0.545	-0.0484	0.2688	0.5359	0.2443	0.1197	0.25626	-0.0051	0.0041	-0.0144	0.0995	-0.073194	0.1452	-0.0346	-0.0725	0.1714	0.341	0.3903	0.2275	0.5225	0.048987	0.5806	0.399	0.2881	0.0048842	0.0084515	-0.0134	0.0391	0.3536	0.4979	-0.021856	0.5872	0.1322	0.0048	0.585	0.2094	0.0169	0.026624	0.2645	-0.0105	0.2175	0.3429	0.1612	-0.0111	-0.0512	0.5725	0.2109	0.117	-0.0538	0.2999	0.0215	-0.027	-0.0316	0.3246	0.366	0.2782	0.0148	-0.0187	-0.020064	0.0244	0.1873	0.0213	0.0372	0.0089705	0.0425	0.0066	-0.0344	0.6345	0.4816	0.6168	0.57313	0.2516	0.0729	0.0066241	0.0116	0.072	0.4136	0.6266	0.2653	0.276	0.0715	0.3219	0.2698	0.4256	0.1645	0.577	0.2925	0.248	0.5212	0.0098	0.528	0.19802	0.002	0.0348	0.1141	0.0929	0.2496	0.3748	0.0909	0.20096	0.0752	0.2676	0.1033	-0.2952	0.5383	0.6233	0.3281	0.20716	0.0335	0.0479	0.0638	0.46365	0.025	0.0341	0.072701	0.4434	0.0712	0.58384	0.4475	0.0148	0.20522	0.053	0.017	0.030458	0.2009	0.049	0.064602	0.0656	0.0674	0.0094	0.1742	0.199	0.0523	0.04659	0.0264	0.0154	0.0563	0.1502	0.2955	0.040458	0.029573	0.2346	-0.56578	0.00046086	0.088086	0.016997	0.1365	-0.3793	0.1822	0.22004	0.3438	0.4062	0.40157	0.0065	-0.21553	0.0849	-0.2549	0.62648	-0.0044	0.1362	-0.4047	0.1656	0.2536	0.2416	0.0032238	0.2363	-0.0332	0.0221	0.2921	-0.0098	0.35404	0.7292	0.2978	0.6069	0.2193	0.0041	0.0117	-0.1131	-0.03076	
Stanford_standard_080606	Amplification Peak 14 - log2 ratios	20q12  	chr20:39014002-39032414(probes 477427:477431)  	chr20:39017367-39028373(probes 477428:477430)  	chr20:1-62382906(probes 469702:483140)          	1.3393e-14	  1.3393e-14	broad	Actual Log2 Ratio Given	-0.1046	0.0062	0.1981	-0.0043332	-0.0131	0.0331	-0.035138	0.025	0.28548	0.3029	0.271	0.0229	0.26188	0.063448	-0.0106	-0.0027	0.0297	0.0598	0.255	0.22404	0.0566	0.26591	-0.0126	0.0076	-0.0168	0.1708	0.10321	0.1683	-0.0098	-0.061	0.0152	0.8396	0.3703	-0.0015	0.0088	0.0542	0.0183	0.0822	0.0244	0.25433	0.11545	-0.001	0.1475	0.0163	0.2287	-0.0025	0.0073	0.1367	0.0224	0.1701	0.20639	-0.05	0.082059	0.2815	0.0185	-0.0308	0.3073	0.2155	0	-0.116	0.1826	0.236	-0.0556	-0.0211	-0.004	0.004	-0.0212	-0.0303	-0.0124	-0.0053	0.2431	0.0056	0.0019	-0.0112	0.0137	-0.0065	0.009	0.1256	0.0032705	-0.0105	0.0008	0.0396	0.21396	-0.0064	0.2634	0.25793	0.2187	0.0499	0	0.0601	0.038222	0	0.2515	0.0039	0.0249	0.0089	0.036	0.0089	0.0219	0.0783	0.2632	0.2219	0.2267	0.2293	0.0165	0.151	0.20862	0.0072	0.1539	0.009	0.0326	0.1641	0.2138	0.17449	0.048291	0.1748	0.13893	0.1175	-0.0265	0.1164	0.251	0.0192	0.2021	0.0051	-0.0333	0.041	-0.0094456	0.0076	0.2	0.04936	0.0162	0.1675	-0.0055634	0.1309	0.0056	0.1835	0.0245	-0.0007	0.025008	0.0116	0.057	0.016245	0.0345	0.086	0.2212	0.2289	0.1502	0.1393	0.0239	0.0086	-0.1624	0.069646	0.1668	-0.001519	0.0166	0.016186	0.24	0.037498	-0.030039	0.055786	0.0293	0.081789	0.005885	0.577	0.6446	0.2449	0.3228	0.28235	0.2441	-0.094934	0.0549	0.0168	0.50148	0.0491	0.0349	0.095	0.0241	0.1529	0.2423	0.0031	0.2298	0.1289	0.0107	0.28067	-0.0116	0	-0.0007	0.0251	-0.0195	0.2959	0.0087	0.0075	-0.01263	-0.031191	
Stanford_standard_080606	Deletion Peak 1 - log2 ratios	1p36.23 	chr1:7866852-8109797(probes 1149:1179)            	chr1:7922190-8018086(probes 1156:1166)            	chr1:7592601-9353809(probes 1111:1394)            	0.0029148	   0.0029148	focal	Actual Log2 Ratio Given	0.0677	-0.0012	0.011	-0.0027954	-0.043	-0.0362	-0.0011379	0.0233	0.023083	0.1102	0.0104	-0.1876	0.20008	0.0953	-0.032562	-0.536	0.0258	0.0072	-0.003	0.0014	0.1369	0.0075136	-0.0049232	0.0051382	0.0523	0.0144	0.048409	0.0118	-0.0318	-0.0417	-0.2789	-0.2842	-0.0394	-0.0055733	0.0054	-0.0409	-0.0047	0.0053592	-0.020035	0	0.0095	-0.0005	0.0156	-0.0028	0.0088	0	-0.0135	-0.3456	0.0174	0.0144	0.2036	-0.041607	-0.29808	0.0020519	-0.0384	-0.0194	0.2304	0.1534	-0.0006	-0.0753	-0.3139	-0.0073	-1.4452	-0.0148	-0.0069	-0.0171	-0.0083	-0.0208	0.0332	0.1491	0.0034	-0.0010628	-0.0127	0.0046	0.0004	0.018	-0.0378	-0.0105	-0.0012295	-0.2791	0.1832	0.0682	0.0183	-0.2719	0.0122	0.023733	0.0134	0.0447	-0.010766	0.0454	-0.0014816	0.205	-0.4903	0.013151	0.0218	0.0056163	0.0535	0.0207	0.0116	0.0175	0.0145	0.0008	0.1278	0.0087204	0.0091	-0.00047843	-0.41108	-0.2657	-0.2496	-0.1345	-0.26	-0.2444	-0.1754	0.0093	0.042291	-1.0629	0.049	0.1414	-0.0204	-0.0187	-0.0069062	-0.2226	-0.0033	0.2328	0.1242	-0.0383	-0.26565	0.0054	-0.1811	0.0222	0.0085	0.13075	-0.058463	0.11886	0.0036	0.0062672	0.0445	0.0119	-0.24074	-0.0016	0.0782	0.020545	0.0604	-0.0033	-0.0021	0.0009	-0.0243	0.0945	0.0375	-0.00195	0.0165	0.0533	-0.025419	-0.0089648	0.0119	-0.2196	0.0221	-0.57331	-0.34674	-0.26521	0.0538	0.11362	0.1032	0.35929	0.1553	0.051741	0.1009	0.061946	-0.0327	-0.12893	0.0902	-0.0097	-0.30632	-0.0455	-0.5103	-0.0966	0.0026	-0.5303	-0.0088	-0.0033	-0.3915	-0.0139	0	-0.4965	-0.0123	-0.044855	-0.0118	0.0424	0.0161	-0.5167	0.008273	0.0208	0.1213	-0.047447	
Stanford_standard_080606	Deletion Peak 2 - log2 ratios	1p33    	chr1:50959052-51235026(probes 7860:7875)        	chr1:51090594-51221588(probes 7869:7874)        	chr1:50931936-51235026(probes 7859:7875)        	0.037923	     0.21615	focal	Actual Log2 Ratio Given	0.0677	0.0040988	0.011	-0.0027954	-0.0086	-0.0362	-0.0011379	0.0042	0.025583	0.0135	0.0104	0.027	0.080525	0.090453	-0.018	-0.5898	0.0258	0.0072	0.0031681	0.0014	0.0488	0.0073136	-0.0049232	0.0065195	0.0523	0.0144	0.048409	0.0118	-0.0318	0.0054218	0.0088	0.017	-0.0394	0.0049	0.0054	-1.532	-0.0047	0.0053592	-0.020035	0	0.0095	-0.0005	0.0156	-0.0028	0.0070652	0	0.0074558	0.1121	0.015467	0.0144	0.2036	-0.041607	-0.28148	0.0020519	-0.0384	-0.0194	0.2304	-0.5347	-0.0006	-0.0753	0	-0.0302	-0.0206	-0.0148	-0.0069	-0.0171	-0.0083	-0.0208	0.0332	0.1491	-1.5639	-0.0010628	-0.0127	-0.0049	0.0004	-0.0256	-0.0378	-0.0105	-0.0012295	-1.1214	0.1721	0.06641	0.01144	-0.0018	0.0164	0.023733	0.0134	0.0447	0.0047	0.0345	0.043359	0.205	-0.001	0.0081	0.0218	0.0075709	0.02347	0.0117	0.0116	0.0175	0.0145	0.0008	0.1278	0.0015	0.0091	0.0079	0.00081748	-0.0014002	-0.0096	0.0675	0.19079	0.0039	0.0208	0.0112	0.037229	-0.0046	0.040347	0.1414	-0.0034	-0.0187	0.1957	0.042	-0.0033	-0.4528	-1.0525	0.0080651	0.010254	-0.3975	0.2101	0.0222	0.0085	0.0953	-0.0069634	0.11886	0.0036	0.0062672	0.0445	0.0055	0.024158	-0.0016	0.0782	0.022078	-0.6094	-0.0033	-0.0021	0.0009	-0.0243	-1.5579	0.00047132	-0.00195	0.0165	0.0533	0.017213	-0.5398	0.0119	-0.2359	0.0221	-0.64361	-0.034739	0.023154	0	0.0424	0.12382	0.1105	0.0239	0.051741	0.012583	0.061946	-0.0041008	-0.12893	0.0166	-0.4051	0	-0.0455	0.0325	-0.0694	0.0026	-0.0321	-0.0088	-0.0033	-0.0064	-0.0139	0	-0.0128	-0.0123	-0.044855	-0.0118	0.0016	-0.558	0.1079	-0.0024	0.0208	0.14366	0.003455	
Stanford_standard_080606	Deletion Peak 3 - log2 ratios	3q28    	chr3:192548087-192549937(probes 115486:115487)	chr3:192548087-192549571(probes 115486:115486)	chr3:192547223-192555921(probes 115485:115490)	0.00062629	  0.00062629	focal	Actual Log2 Ratio Given	0.1589	0	-0.6242	0.014317	-0.0013	-0.5421	0.013562	0.0005	0.015083	-0.0115	-1.4993	0.056	-0.018518	-0.2826	-0.007	-0.0037	0.004	0.0183	1e-04	-0.007454	0.0173	-0.0029864	0.0061	0.0644	0.0093	-0.0029	-0.056894	-0.005	-0.031	-0.079563	-0.007235	0.002	0.0364	0	-0.0024	0.091538	-0.01908	0.0011	0.0092	-0.0034468	-0.1315	0.00015381	0.007	-0.006921	-0.009	0.0094	-0.0011	0.12824	-0.0044	-0.005	-0.13579	0.0157	-0.0021755	0.0027	-0.0109	0.0064	-0.0196	0.0047	-0.0004	0.0775	0.0154	-0.0068	0.0344	-1.5488	0.0011	0.0652	0.076181	0.013	0.0081	-0.1971	0.0031	0.0048	-0.0007	-1.5943	0.0342	-0.0009	-0.0188	0.2443	-1.5807	0.0089	-0.0048	0.03	-0.0006	0.0059	0.0024	0.014261	-0.0062	-0.0627	0.0128	-0.0304	-0.0043868	-0.0062	0.0045	0.003	-0.0013	0.0338	0	-0.4124	-0.0135	0.0098	0.0022	0.0023	-0.1748	0.0052	0.0385	0.0033	-0.029682	0.0449	0.0012	0.0792	-0.0083	-0.0013	-0.0029958	0	-0.042509	-0.4086	-0.0099	0.0195	-0.042207	0.0032	-0.0036	0.0239	-0.0016	0.0032	0.1397	0.013004	0.0089544	-0.0043	0.02348	0.0029	-0.0096	0	0.0059675	0.0068	0.0018427	0.1216	0	0.005	-0.29404	-0.1302	0.0646	0.0060214	-0.5423	-0.014339	-0.0037	0.0284	-0.178	0.1242	-0.6188	0.2612	0.0218	0.0121	0.0003	0.0136	0.2628	-0.0095971	-0.2302	-0.0012399	0.20536	0.20359	-0.0022	-0.0174	0.031038	-0.0319	-0.2976	0.0218	0.031	-0.0087542	0.0029	0.037766	0.0328	0.0163	0.021077	-0.1741	0	-1.5149	-0.008	0.1239	-0.69472	0.00030001	-0.0068	-0.2275	0.0032	-0.0045	-0.5414	0.044245	0.0028686	0	-0.0015	-0.2212	0.2486	0.0137	0.0907	0.0028529	
Stanford_standard_080606	Deletion Peak 4 - log2 ratios	6q26    	chr6:163737902-163888570(probes 211759:211770)	chr6:163758785-163797746(probes 211761:211767)	chr6:108383052-170744033(probes 200660:213390)	2.6428e-06	  2.6428e-06	broad	Actual Log2 Ratio Given	-0.0275	-0.4761	-0.0037	-0.54868	-0.0090687	0.032613	0.034262	0.0068	-0.52652	0.0328	-0.5286	-0.027153	0.032282	-0.0841	-0.3929	-0.0013	0.0155	0.0085	0.0004	-0.0013337	-0.3266	-0.0061864	0.010049	-0.00017567	0.0456	-0.0262	0.032506	-0.083447	-0.4562	-0.0308	-1e-04	0.0388	0.2149	-0.0018	-0.0037568	-0.1049	0.0617	-0.0104	-0.0542	-0.0077	0.0075038	-0.0024	-0.2265	0.0019	-0.355	-0.0255	-0.006226	-0.2691	-0.001	-0.0035	-0.1464	0.0115	-0.071976	-0.586	-0.4995	0.0046	-0.012724	-0.0009	0.0036	-0.0772	0.0094	-0.4384	-0.0056	-0.4349	0.0015	-0.3041	-0.1183	0.003	-0.236	0.0222	0.0179	0.0022736	0.017	0.0107	-0.4172	-0.3539	-0.5099	-0.0366	0.0030705	0.0035	0.0012	-0.0406	-0.0061	-0.2922	-0.5369	-0.0055555	0.013103	-0.0017	0.0107	-0.1328	0.0077	-0.0093	0.0011022	-0.063698	-0.0062335	-0.082287	-0.0002	-0.0002	0.0032	0	-0.0072	0	0.0072	-0.4094	0.017	-1e-04	-0.0035332	-0.3083	0.0099	-0.1961	0.013809	-0.0028576	0.0007	-0.026055	-0.0038093	-0.0033	-0.0008	0.1085	0.48268	-0.0299	-0.0116	-0.2267	-0.4754	-0.4891	0	-0.021	-0.0079456	0	-0.0039	0.033848	-0.0049	-0.0067749	0.0062366	-0.3987	0.0002	0.0073	-0.009	-0.3301	-0.26054	0	0.0499	0.0047449	-0.0161	0.0105	0.0028	-0.0022	-0.01	0.1312	-0.0045	-0.0003	0.0191	-0.1188	-0.0035	-0.5228	0.004	0.0008	-0.8232	0.002058	-0.039939	-0.00011434	-0.002	0.0188	0.022	-0.0623	0.0094	0.0242	-0.5067	-0.38105	0.0058795	-0.53513	0.0124	-0.0306	-0.53352	0.0301	0.0009	-0.803	-0.0096	-0.0424	0.0025	-0.2014	0.0138	0.175	-0.5458	0.0031	-0.0041	-0.032955	0.0047	-0.1996	-0.0032	-0.0061	-0.5	-0.064744	0.0871	-0.021247	
Stanford_standard_080606	Deletion Peak 5 - log2 ratios	9p21.3  	chr9:21964219-21996272(probes 273875:273882)    	chr9:21970152-21987871(probes 273876:273877)    	chr9:1-70233708(probes 267451:277237)             	6.2723e-289	 6.2722e-289	both	Actual Log2 Ratio Given	-0.979	-0.0055629	-0.27	-0.59858	-1.5346	-0.55677	0.30696	-1.5448	-1.5133	-1.5391	-0.777	-1.5347	0.11978	0.0296	-1.3241	-0.05133	0.0094	-0.7392	-1.4899	-1.5381	0	-1.5342	-0.0018	-1.25	0.054969	-0.3946	0.0056057	-0.4153	-0.049	0.016668	-0.9646	-1.3439	0.2022	-0.4706	-1.2761	0.086939	0	0.0027	-0.3357	-0.5553	-0.018377	-0.5745	-1.1192	-0.0005	-1.168	-0.3841	-0.0011	-1.5673	-0.0977	-0.687	0.0077	-0.58642	-0.84208	-1.5189	-0.7577	-1.5479	-0.1703	-0.7421	0.001	-1.5793	-1.0042	-1.553	-1.4835	-1.5488	-0.0311	-1.5487	-0.5692	-0.673	-0.2518	0.1434	-1.5639	0.0011	0.0038274	-0.5792	-1.5721	-1.5651	-0.4885	-1.3408	-1.5807	-1.1448	-1.0867	0.0351	-1.3315	-0.8336	-1.5038	-1.5008	-0.9969	-0.0565	0.0007	0.0244	-0.17038	-0.8061	-1.5141	0.011931	-0.0417	-0.061695	-1.1923	-1.5082	0.066	0.0189	-1.5003	0.0156	0.0062	-1.223	-1.1567	-0.0038	-1.4814	-0.32816	-0.8368	-0.7027	0	-0.7514	-0.9488	-0.5434	-0.0027848	-1.3248	-0.014627	-0.2875	0.524	-0.4474	0.0082	0.0228	-1.5383	-1.5287	-1.507	0.010651	-0.31785	-0.6897	0.1816	0.0197	-0.5827	0.0118	-1.2973	-0.1119	-0.5544	-1.0875	0	-1.0579	-0.81214	-0.4535	-0.39733	-0.0063551	-1.548	-0.894	-1.5117	-0.0182	-0.1665	-1.5579	-1.5168	-1.4776	0.0215	-1.1305	-0.3543	-1.5397	-1.5169	-1.52	-1.5534	-0.031621	-0.96224	-1.0617	-1.3601	-1.5375	-0.0202	-0.034269	-0.0592	-0.4375	-1.5091	-0.49655	-1.5253	-1.6018	-1.4718	-0.7247	-1.4764	0.0708	-0.0045696	-1.5149	-0.7237	-1.262	-1.5411	-0.5698	-1.5572	-0.3247	-1.6085	-1.5266	-1.5323	-0.92006	0.0015	-1.4826	-1.5209	-1.3947	-1.5563	0	0.018	-1.1188	
Stanford_standard_080606	Deletion Peak 6 - log2 ratios	10q23.2 	chr10:89560230-89635452(probes 309087:309100)  	chr10:89589557-89596168(probes 309097:309097)  	chr10:1-135054788(probes 291852:318453)         	6.9087e-88	  6.9082e-88	both	Actual Log2 Ratio Given	-0.0256	-0.53694	-0.8843	-0.54368	-0.55917	-0.4235	-0.27734	-0.59831	-0.52602	-0.4955	-0.4865	0.0286	-0.011218	-0.2964	-0.2417	0.0020883	-0.1981	-0.8045	-0.5003	-0.4251	-0.9239	-1.5342	-0.5434	0.0027625	-0.3546	-0.051889	-0.18227	-0.1754	0.0322	-0.0198	-0.3268	-0.3875	0.0087	-0.3902	-0.3864	-0.5072	-0.2592	-0.2341	-0.0068955	-0.5263	-0.1313	-0.2175	-0.1988	0.0049	-0.3608	-0.38149	-0.5302	-0.2876	-0.0813	-0.1965	-0.1366	-0.0326	-0.11086	-0.5496	-0.0714	-0.508	-0.0096134	-0.4978	-0.0067	-0.302	-0.3095	-0.4441	-0.3865	-0.4531	-0.201	-0.3715	-0.196	-0.0072	-0.2491	-0.1965	-0.489	-0.2434	-0.0205	0.0045	-0.4283	-0.4746	0.00030001	-0.3554	-0.45233	-0.3072	-0.3153	-0.1537	-0.3967	-0.2883	-0.5357	-0.44547	-0.3046	-0.1295	-0.25265	-0.13632	-0.10866	-0.259	-0.514	-0.3445	-0.024997	-0.06152	-0.3602	-0.4287	-0.1658	-0.0798	-0.5226	-1.4969	-0.4284	-0.3787	-0.3022	-0.4634	-0.40888	-0.3094	-0.2576	-0.1805	-0.3198	-0.2574	-0.2958	-0.4643	-0.4689	-0.3538	-0.0068	-0.3214	0.0034193	-0.1492	-0.5046	-0.2461	-0.4761	-0.47531	-0.24428	-0.071485	-0.26005	-0.2341	-0.268	-0.2211	-0.1969	-0.2664	-0.37216	-0.2528	-0.1963	-0.3	-0.3257	-0.9715	-0.30504	-0.08834	-0.2593	-0.37566	-0.50532	-0.2743	0	-0.2705	-0.18415	-0.3585	-0.415	0.0016	-1.6428	-0.3025	-0.8862	-1.5397	-1.5169	-0.4975	-0.27004	0.0042151	-0.32987	-0.31491	-1.3983	-0.4508	-0.4216	-0.0063	0.0286	-0.3079	-0.4808	-0.37054	-0.4969	-0.58718	-0.443	-0.8664	-0.59252	-0.5709	-0.5694	-0.5035	-0.2333	-0.25469	-0.4246	-0.5976	-0.4457	0	-0.0022	-0.5848	-0.1203	-0.038455	-0.0002	-0.4226	-0.4736	-0.4193	-1.5563	-0.5173	-0.51104	-0.35675	
Stanford_standard_080606	Deletion Peak 7 - log2 ratios	11p15.4 	chr11:3129491-3136035(probes 318930:318933)      	chr11:3129491-3136035(probes 318930:318933)      	chr11:3129491-3136035(probes 318930:318933)      	0.24273	     0.24273	broad	Actual Log2 Ratio Given	-0.0573	0.0048	0.0097	-0.00013622	-0.0083	-0.5277	0.0059598	-0.5848	0.0072159	0.0444	0.0077	-0.1623	0.098082	0.054102	0.0013676	0.0009	-0.0536	-0.0082	-0.0013	-0.0012	0.091231	0.0014136	-0.0058	-0.3776	-0.065	0.2053	-0.089794	0.0116	-0.2763	0.008	0.011239	0.2241	-0.2422	-0.0197	0.010057	-0.13558	-0.1054	0.0087	0.0162	-0.002	-0.36062	0.0017	-0.1994	-0.3635	0.0074	-0.38475	0.0025	0.1255	0.0106	0.0102	-0.13537	-0.5901	0.00082556	0.0022903	-0.0295	-0.0045	-0.0058	-0.0059	0.0034	-0.2342	0.0087	0.0021	-0.0195	0	-0.0206	-0.0339	0.011046	-0.0048	0.0042436	-0.1304	0.044	0.0032	0.0008367	0.006	0.0061	0.0048	0.017	0.0153	0.04597	0.0075	0.0043	-0.1041	0	-0.0031	-0.0137	0.00033286	0.007	-0.4405	-0.5519	0.0378	0.0512	0.0004	0.0002	-0.0138	-0.001097	-0.0225	0.0091	0.0015	-0.3283	-0.0179	-0.0004	0.0067557	8.2891e-05	0.0056	-0.0573	0.0052	0.0045523	0.003	0.0008	-0.1095	-0.0017	0.0011	0.0119	-0.0036	-0.059709	-0.0032	-0.0222	-0.1594	-0.0035	0.0078	-0.0192	-0.2192	-0.0157	0.0038	0.0585	-0.0166	-0.015046	0.0029	0.0128	-0.0481	0.0046	0.009	-0.0051634	0.0008	-0.0062	0.0024	0.0177	0.0033	0.0059581	-0.4091	-0.0152	-0.14156	0.0062	0.0048533	0.0057	-0.0059	-0.1332	-0.3217	0.0123	0.0055	-0.4472	0.0213	-0.0035	0.0054	-0.0057085	0.0048877	-0.7781	0.020493	-0.0079391	-0.0035006	-0.9084	0.011781	-0.0193	0.0837	-0.3662	0	-0.0095	0.013246	-0.012288	-0.048834	0.0042393	-0.001	0.038477	0.1778	0.013193	0.022098	0.0084	-0.0417	0.008	0.0071	0.0136	0.0097	-0.48	0	-0.0086333	-0.035855	0.0046	0.0075	0.0039	-0.0099	-0.0064841	-0.2301	-0.127	-0.016547	
Stanford_standard_080606	Deletion Peak 8 - log2 ratios	13q14.3 	chr13:49279018-49828543(probes 375528:375602)  	chr13:49279018-49543164(probes 375528:375554)  	chr13:1-113962629(probes 368586:388335)       	3.2581e-21	  3.2581e-21	broad	Actual Log2 Ratio Given	-0.3769	-0.0068	-0.3386	-0.55445	-0.0011	-0.1451	-0.53874	-0.0225	-0.0014845	-0.0523	-0.0083	-0.4851	-0.009541	-0.5494	0.0055	-0.6483	-0.1762	-0.2414	0.004	-0.0037788	-0.3789	-0.018986	0.0047	-0.0114	-0.3493	-0.2197	-0.19679	-0.0198	0.0061	0.0023	-0.3537	-0.2385	-0.3144	0.0064426	-0.0085	-0.026326	-0.243	-0.2578	-0.0562	-0.0007	-0.058508	0.001	-0.0011	0.0054	-0.0068136	-0.38718	-0.0005	-0.273	-0.0057	0.0032	-0.1355	-0.5786	-0.25308	-0.0085	-0.5472	0.0119	0.0032	0.0213	0.0077	0.1096	-0.0056	0.0199	0.0265	0.0322	-0.2057	-0.04	-0.169	0.0141	-0.2394	-0.0057973	0.0114	-0.2877	0	-0.5601	0.0034	-0.5057	0.0171	-0.0375	-0.48623	-0.1984	0.016	-0.143	-0.4161	-0.292	0.00082064	-0.0042671	-0.024	-0.4229	0.0013	-0.1362	-0.018234	0.0026	0.0022	-0.0379	-0.0273	-0.0015	-0.4059	-0.0379	-0.4172	-0.0786	0.0011	-0.3853	-0.1735	-0.0059	-0.29109	0.0033	-0.43218	-0.3168	-0.2557	-0.2222	-0.0376	-0.005	-0.0168	-0.0116	0.0048907	0.0133	-0.0046	-0.1446	0.0063	0.0185	-0.1298	-0.2657	0.0056	-0.0018	-0.4671	-0.0265	-0.27365	0.008	-0.2953	-0.2716	-0.233	-0.2978	0.0071366	-0.0824	-0.0032	-0.0084	-0.3784	-0.2394	-0.32934	-0.4096	0	-0.039755	-0.0151	0.0284	0.0228	-0.48553	0	-0.2428	0.0053	-0.4784	-1.6428	-0.0673	0.0011	-0.0013	-0.0665	-0.030486	-0.30085	-0.022307	0.0097609	-0.035224	-0.4267	-0.4741	-0.4427	-0.5523	-0.0405	-0.0234	-0.0146	-0.02028	-0.5149	0.027766	-0.5099	-0.2625	-0.080323	0.0805	-0.6391	-0.105	-0.2626	-0.0489	-0.4734	-0.1983	-0.506	-0.2953	-0.5396	0.0108	0.0126	0.049945	-0.0024	0.01	0.0104	0	-0.4767	-0.0333	-0.4451	-0.36595	
Stanford_standard_080606	Deletion Peak 9 - log2 ratios	14q23.3 	chr14:61976640-66678700(probes 396467:397242)  	chr14:65997232-66678700(probes 397200:397242)  	chr14:1-103049705(probes 388337:403851)       	1.2494e-06	  1.2494e-06	broad	Actual Log2 Ratio Given	-0.0104	0.0017	0.0013	-0.54624	-0.0085286	-0.4372	-0.52548	0.0046	0.0085832	-0.5244	-0.0019	-0.50311	-0.18282	-0.2876	-0.0128	-0.0001	-0.2102	-0.207	-0.0013	-0.019993	-0.3552	0	-0.0011	-0.121	0.0057	0.0028	-0.19189	-0.0075	-0.454	-0.4084	0.003	0.0084	-0.254	-0.0026	0.0017	-0.4112	0.0695	-0.002	-0.4111	0.004682	-0.0523	0.0006	-0.1891	0	-0.0127	-0.37964	0.0663	0	-0.0997	0.0023	-0.1353	0	-0.0030755	0.0038	-0.6512	0.023	-0.032	-0.0278	-0.0066	-0.49923	-0.0027	-0.0072	-0.0085	-0.0038	-0.0069	-0.3819	-0.1346	-0.0039	-0.2575	-0.1992	-0.0038	-0.0011	-0.027848	-0.0044	-0.008	-0.0085	-0.4568	-0.01463	-0.0025295	-0.3268	-0.0018659	-0.163	0.0016	0.0051	0.0114	0.013033	0.017555	-0.2282	-0.1923	-0.1275	0.0093088	-0.0081	0.0031	-0.31952	0.0059	-0.050108	-0.3503	0.0089	-0.0852	-0.0253	1e-04	0.0032	0.0012	0	-0.34	0.00073293	0.0022185	-0.3137	-0.0162	-0.19262	-0.0055468	0.00085317	-0.1416	0.029	0.0057907	-0.0096	0.0047	0.0695	0.0395	-0.033002	0.0137	0.0185	0.0046	-0.0015	-0.32602	-0.003	0.0044544	-0.1997	-0.023	0.026051	0	0.0084	0.0039366	0.0256	0.0016	-0.002	-0.0003	-0.3147	-0.30494	-0.0815	-0.0243	0.0065974	-0.506	0.0026	-0.4352	0.0004	-0.1622	-0.3728	-0.0126	-0.0018	0	-0.3095	0.0031198	-0.4512	-0.0081	-0.0545	0.098212	0.017793	-0.0051787	0.026686	0.0105	0.023	0.024955	0.013	0.0633	0.0115	0.0349	0.038946	-0.0052	-3.4317e-05	0.0275	-0.2501	-0.0042225	-0.0201	0.0274	-0.5238	-0.0044	0.1251	-0.011	-0.2042	0.1047	-0.025	-0.5	-0.0071	-0.0074	0.030845	-0.0029	0.0026	-0.0118	-0.0134	-0.4888	-0.6341	0.0481	0.0053529	
Stanford_standard_080606	Deletion Peak 10 - log2 ratios	15q14   	chr15:32964800-36799870(probes 406016:406865)  	chr15:33754472-34530722(probes 406149:406359)  	chr15:32964800-36872247(probes 406016:406890)  	0.08735	     0.08735	focal	Actual Log2 Ratio Given	-0.2074	-0.5329	0.0097	0	-0.0044	0.0263	-0.5394	-0.0274	0.016699	-0.5386	0.010718	-0.5171	0.12238	-0.5228	-0.0083	-0.0042	0.0174	-0.2072	-0.0038356	-0.4494	0.023557	0.0040136	-0.0062248	-0.1004	-0.0019	-0.0849	0.059149	0.0149	0.0024	0.0059	0.0094	0.0238	0.0578	0.0032522	0.0005	-0.1134	0.0643	-0.0477	0.0194	0.0043	-0.1172	0.0018	0.0092	-0.0779	0.004181	-0.00040672	0.0003	0.0716	-0.0197	-0.2488	-0.14073	-0.0278	-0.052876	0.006	-0.0952	-0.0372	-0.0116	-0.049	-0.0126	-0.1548	-0.06	-0.0028	-0.0334	-0.0222	-0.2187	-0.0796	-0.0317	-0.0289	-0.0206	-0.0446	-0.01	-0.0145	-0.0268	-0.0031	-0.011676	-0.0154	-0.0176	-0.3969	-0.01263	-0.0072	-0.0134	0.0199	0.0031312	-0.2913	-0.0016	0.0046329	0.0145	-0.21003	-0.1565	0.0621	0.0018996	-0.0154	-0.0024	0.0018444	0.015447	-0.026061	0.0191	0.0073	-0.0044	0.0216	0.0052	-0.0182	0.0061472	0.0014006	-0.026	-0.0003	0	-0.0104	-0.0215	-0.2016	0.0071	0	-0.0157	-0.026	-0.030709	-0.026	-0.0014	-0.4016	0.0077673	-0.0124	-0.0124	0.0017812	-0.0095287	-0.0083	-0.0461	-0.0049	-0.25465	-0.0082	0.0194	0.016877	-0.2171	0.0171	0.0040273	-0.0419	0.0044422	-0.001	-0.2111	-0.0036	0.011958	0.0094	-0.0621	-0.44046	0.0144	-0.0093	-0.015	-0.0975	-0.038602	-0.1509	0.0035	-0.0054	0.0006	-0.0241	-0.0656	-0.33289	-0.3196	-0.006	-0.2898	-0.066007	-0.016939	0.0083694	0.0025	-0.446	-0.4342	0.0278	-0.5721	0.0267	-0.5101	0.0091458	-0.0025431	-0.037634	-0.4268	0.00268	0.041377	-0.148	0.0184	0.077984	0	-0.0508	-0.0197	-0.0089	-0.017	-0.0316	0.3007	-0.012	-0.0119	0.027745	-0.0207	-0.5263	-0.019	-0.0122	0.0029488	-0.0172	-0.36754	-0.018247	
Stanford_standard_080606	Deletion Peak 11 - log2 ratios	22q13.31	chr22:44931686-49691432(probes 494745:494809)  	chr22:45035144-49691432(probes 494772:494809)  	chr22:20434874-45439639(probes 491286:494808)  	5.2069e-06	  5.2069e-06	broad	Actual Log2 Ratio Given	-0.0352	-0.0017014	-0.2925	-0.54808	-0.0326	-0.0829	-0.038838	0.0191	-0.10232	-0.3654	0.024969	0.0175	0.037782	-0.4098	-0.3949	-0.0054	-0.0363	-0.0195	-0.0049	0.0054	-0.2077	-0.56049	-0.0295	0.0052	-0.0165	-0.011	0.036806	0.0023	-0.037	-0.1076	0.0164	0.129	0.3689	-0.0405	0.0026	0.0261	-0.0861	-0.2277	-0.0029	-0.0089	-0.0317	-0.0196	-0.1655	0.0176	0.0144	-0.3847	-0.0074	0.1598	0.0189	0.027	-0.1531	-0.069	-0.021676	0.001	-0.0696	-0.0442	-0.0329	-0.0652	-0.0009	0.0548	-0.0279	-0.0095	-0.0563	-0.0499	-0.1409	0.0625	-0.2268	-0.2456	-0.0273	-0.005	-0.432	0.0035	-0.0181	-0.009	0.0245	-0.444	0.014	0.0428	0.0058705	0.0259	-0.0013	-0.1249	-0.0058	-0.033342	0.0109	0.045333	0.0521	0.0468	-0.2116	0.0754	0.0417	0.0043	-0.0003	0.006121	0.0406	-0.0534	0.058017	-0.4079	0.0277	-0.0329	0.0103	0.016	-0.3774	0.0117	-0.3165	-0.00052304	-0.39238	-0.2763	-0.2551	-0.1148	-0.2558	-0.0066	0.0895	-0.0139	0.040491	-0.3305	0.013353	0.0251	-0.026861	0.0087	-0.4969	0.0308	-0.4686	0.0122	-0.2502	-0.0575	-0.0086456	-0.1952	-0.5763	-0.1929	0.0355	0.0363	-0.013663	0.1203	0.004	-0.2759	0.0419	0.0001	-0.27004	-0.14383	-0.3748	0.017145	-0.4106	0.00099999	-0.37	-0.1389	0.1262	-0.2511	0.0405	0.0181	0.0145	0.0659	-0.024	0.0048	-0.0635	-0.4933	-0.2569	0.057293	-0.039739	0.081286	0.0294	0.1085	-0.4098	-0.3867	0.1146	0.0965	0.023	0.10205	-0.5067	-0.16853	0.0772	-0.2466	0.32208	0.0036	-0.4864	-0.3983	0.0404	0.1808	0.0068	-0.1514	-0.4025	-0.0687	0.016	0.012	-0.0104	-0.24606	0.0049	-0.0215	-0.0029	0.0171	0.0028	-0.011391	-0.2337	-0.36055	
Stanford_standard_080606	Amplification Peak  3- Contributing Broad Events	7p	Amplitude values represent median within significant region.	Broad Event Corresponding to Amplification Peak 3	chr7:1-158612945(probes 213392:240523)         	3.0287e-50	     0.15003	broad	0: t<0.12; 1: t>0.12	1	1	1	0	1	0	0	0	1	1	1	0	1	0	1	0	1	1	1	1	0	1	1	0	1	1	0	1	0	0	1	0	0	1	1	1	1	1	0	0	0	1	1	1	1	1	1	1	0	1	1	0	1	1	0	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	0	0	1	1	0	1	1	1	1	0	1	1	1	1	0	0	0	1	0	1	1	1	0	0	1	1	0	0	1	1	1	1	1	1	0	0	1	0	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	1	1	1	1	1	0	1	0	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	0	0	1	1	1	1	1	1	1	1	0	1	1	1	1	1	0	0	0	0	1	0	1	0	1	1	1	0	0	1	1	
Stanford_standard_080606	Amplification Peak  4- Contributing Broad Events	7p	Amplitude values represent median within significant region.	Broad Event Corresponding to Amplification Peak 4	chr7:1-158612945(probes 213392:240523)         	4.6143e-259	 4.6142e-259	both	0: t<0.12; 1: t>0.12	1	1	1	0	1	0	0	0	1	1	1	0	1	0	1	0	1	1	1	1	0	1	1	0	1	1	0	1	0	0	1	0	0	1	1	1	1	1	0	0	0	1	1	1	1	1	1	1	0	1	1	0	1	1	0	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	0	0	1	1	0	1	1	1	1	0	1	1	1	1	0	0	0	1	0	1	1	1	0	0	1	1	0	0	1	1	1	1	1	1	0	0	1	0	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	1	1	1	1	1	0	1	0	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	0	0	1	1	1	1	1	1	1	1	0	1	1	1	1	1	0	0	0	0	1	0	1	0	1	1	1	0	0	1	1	
Stanford_standard_080606	Amplification Peak  5- Contributing Broad Events	7q	Amplitude values represent median within significant region.	Broad Event Corresponding to Amplification Peak 5	chr7:1-158612945(probes 213392:240523)         	3.4699e-51	  1.7451e-05	broad	0: t<0.12; 1: t>0.12	1	1	1	0	1	0	0	0	1	1	1	0	1	0	1	0	1	1	1	1	0	1	1	0	1	1	0	1	0	0	1	0	0	1	1	1	1	1	0	0	0	1	1	1	1	1	1	1	0	1	1	0	1	1	0	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	0	0	1	1	0	1	1	1	1	0	1	1	1	1	0	0	0	1	0	1	1	1	0	0	1	1	0	0	1	1	1	1	1	1	0	0	1	0	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	1	1	1	1	1	0	1	0	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	0	0	1	1	1	1	1	1	1	1	0	1	1	1	1	1	0	0	0	0	1	0	1	0	1	1	1	0	0	1	1	
Stanford_standard_080606	Amplification Peak  13- Contributing Broad Events	19q	Amplitude values represent median within significant region.	Broad Event Corresponding to Amplification Peak 13	chr19:1-63558245(probes 461332:469700)         	1.3932e-41	  1.3932e-41	both	0: t<0.12; 1: t>0.12	0	0	0	0	1	0	0	0	1	1	1	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	1	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	0	1	0	1	1	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	1	1	1	0	0	0	0	0	1	0	0	0	0	1	0	1	1	0	1	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	1	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	1	1	1	1	1	0	0	0	0	1	0	1	0	1	1	1	0	1	0	0	1	0	0	1	1	1	1	0	0	0	0	
Stanford_standard_080606	Amplification Peak  14- Contributing Broad Events	20q	Amplitude values represent median within significant region.	Broad Event Corresponding to Amplification Peak 14	chr20:1-62382906(probes 469702:483140)          	1.3393e-14	  1.3393e-14	broad	0: t<0.12; 1: t>0.12	0	0	1	0	0	0	0	0	1	1	1	0	1	0	0	0	0	0	1	1	0	1	0	0	0	1	0	1	0	0	0	1	1	0	0	0	0	0	0	1	0	0	1	0	1	0	0	1	0	1	1	0	0	1	0	0	1	1	0	0	1	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	1	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	1	1	0	1	1	0	1	0	0	1	1	1	0	1	1	0	0	0	1	0	1	0	0	0	0	0	1	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	1	1	1	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	1	1	1	0	0	0	1	0	0	0	0	1	1	0	1	1	0	1	0	0	0	0	1	1	0	0	0	0	
Stanford_standard_080606	Deletion Peak  4- Contributing Broad Events	6q	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 4	chr6:108383052-170744033(probes 200660:213390)	2.6428e-06	  2.6428e-06	broad	0: t>-0.12; 1: t<-0.12	0	1	0	1	0	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	1	1	1	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	0	1	0	0	0	1	0	0	1	0	0	0	0	1	0	0	1	0	0	0	
Stanford_standard_080606	Deletion Peak  5- Contributing Broad Events	9p	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 5	chr9:1-70233708(probes 267451:277237)             	6.2723e-289	 6.2722e-289	both	0: t>-0.12; 1: t<-0.12	0	0	0	0	1	1	0	1	1	1	0	1	0	0	1	0	0	0	1	1	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	1	1	0	1	1	0	1	0	0	0	1	1	1	1	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	1	0	0	1	1	0	1	0	1	0	1	0	1	1	0	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0	1	0	0	1	1	0	1	1	1	1	0	0	1	1	0	1	0	1	0	0	0	0	1	1	1	0	0	0	0	0	0	0	1	0	1	1	0	1	1	1	1	0	0	1	1	0	1	0	1	0	0	0	0	1	0	0	1	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	1	0	0	1	0	1	0	0	1	1	1	0	0	0	0	1	0	0	1	0	0	0	
Stanford_standard_080606	Deletion Peak  6- Contributing Broad Events	10q	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 6	chr10:1-135054788(probes 291852:318453)         	6.9087e-88	  6.9082e-88	both	0: t>-0.12; 1: t<-0.12	0	1	1	1	1	1	1	0	0	1	1	0	0	1	1	0	1	1	1	1	1	1	1	0	1	0	1	1	0	0	1	1	0	1	1	1	1	1	0	1	1	1	1	0	1	1	1	1	0	0	1	0	0	1	0	1	0	1	0	1	1	1	1	1	1	1	1	0	1	1	1	1	0	0	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	1	1	0	0	1	1	0	0	0	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	0	1	1	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	0	1	1	0	1	1	1	1	0	1	1	1	1	0	1	1	1	1	1	1	1	0	1	1	1	1	1	0	0	1	1	1	1	1	1	1	1	0	1	1	1	1	1	1	1	0	0	1	1	0	0	1	1	1	1	1	1	1	
Stanford_standard_080606	Deletion Peak  7- Contributing Broad Events	11p	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 7	chr11:3129491-3136035(probes 318930:318933)      	0.24273	     0.24273	broad	0: t>-0.12; 1: t<-0.12	0	0	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	1	0	1	1	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	1	0	0	1	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	
Stanford_standard_080606	Deletion Peak  8- Contributing Broad Events	13q	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 8	chr13:1-113962629(probes 368586:388335)       	3.2581e-21	  3.2581e-21	broad	0: t>-0.12; 1: t<-0.12	0	0	1	1	0	1	1	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	1	1	1	0	0	0	1	1	1	0	0	0	1	1	0	0	0	0	0	0	0	1	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	1	1	0	1	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	1	1	1	1	0	0	0	0	0	0	1	0	0	1	1	0	0	1	0	0	0	1	1	0	1	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	1	1	0	1	1	0	0	0	0	0	0	0	1	0	0	1	
Stanford_standard_080606	Deletion Peak  9- Contributing Broad Events	14q	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 9	chr14:1-103049705(probes 388337:403851)       	1.2494e-06	  1.2494e-06	broad	0: t>-0.12; 1: t<-0.12	0	0	0	1	0	1	1	0	0	1	0	1	1	0	0	0	0	1	0	0	1	0	0	1	0	0	1	0	1	1	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0	0	1	1	0	1	1	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	1	1	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	1	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	1	1	0	0	
Stanford_standard_080606	Deletion Peak  11- Contributing Broad Events	22q	Amplitude values represent median within significant region.	Broad Event Corresponding to Deletion Peak 11	chr22:20434874-45439639(probes 491286:494808)  	5.2069e-06	  5.2069e-06	broad	0: t>-0.12; 1: t<-0.12	0	0	0	1	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	1	1	1	0	1	0	0	0	0	1	0	0	0	0	0	0	1	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	1	1	1	0	1	0	1	1	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	1	0	0	0	0	0	1	0	1	0	0	1	1	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	1	1	
peel_off.Harvard_focal_080606	Amplification Peak 1	1p31.1  	chr1:71298556-71322899(probes 5734:5737)      	chr1:71298556-71322899(probes 5734:5737)      	chr1:71298556-71322899(probes 5734:5737)      	0.086361	    0.086361	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Harvard_focal_080606	Amplification Peak 2	1q32.1  	chr1:202299299-203008525(probes 13579:13648)	chr1:202399046-202814266(probes 13591:13632)	chr1:201327370-203776979(probes 13487:13725)	6.5493e-14	  6.5493e-14	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Harvard_focal_080606	Amplification Peak 3	1q44    	chr1:241494131-242812046(probes 16505:16621)	chr1:242184885-242812046(probes 16568:16621)	chr1:241494131-242812046(probes 16505:16621)	0.016723	    0.016723	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	
peel_off.Harvard_focal_080606	Amplification Peak 4	2p24.3  	chr2:11979076-20827615(probes 17893:18362)    	chr2:14353787-17013162(probes 18004:18151)    	chr2:11979076-21008079(probes 17893:18372)    	0.01438	     0.01438	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	
peel_off.Harvard_focal_080606	Amplification Peak 5	3q26.33 	chr3:182340789-183245653(probes 46707:46750)	chr3:182612379-182775400(probes 46720:46724)	chr3:177640393-185071295(probes 46394:46892)	9.4711e-05	  9.4711e-05	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	
peel_off.Harvard_focal_080606	Amplification Peak 6	4q12    	chr4:54486892-54580397(probes 51320:51330)    	chr4:54507498-54546893(probes 51322:51324)    	chr4:48777988-58291466(probes 51129:51598)    	2.4447e-40	  2.4446e-40	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	2	2	0	0	2	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	
peel_off.Harvard_focal_080606	Amplification Peak 7	7p11.2  	chr7:54892257-55065092(probes 88393:88398)    	chr7:54892257-55025313(probes 88393:88394)    	chr7:50422509-62313531(probes 88172:88572)    	1.9174e-232	 1.9175e-232	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	2	0	2	2	0	0	0	0	2	2	2	0	0	0	0	0	0	0	0	2	0	2	2	0	2	0	1	0	0	0	0	2	2	0	0	2	0	0	0	0	2	0	0	0	0	2	0	2	0	2	0	0	0	0	0	2	0	2	0	2	0	0	2	2	2	2	0	0	0	0	0	0	2	0	0	0	2	2	0	2	0	0	2	0	2	2	2	0	2	0	2	2	1	2	2	2	0	0	0	2	2	0	0	0	0	2	2	2	2	2	0	1	0	2	0	0	2	2	0	2	0	2	0	2	0	0	0	0	2	2	0	2	0	0	0	2	2	0	2	2	2	2	0	0	2	2	0	0	2	2	2	2	2	0	0	0	0	0	2	0	0	2	2	2	2	2	2	2	0	2	0	2	0	1	0	2	0	0	0	2	0	2	0	0	2	0	0	0	0	2	2	2	2	2	0	2	
peel_off.Harvard_focal_080606	Amplification Peak 8	7q21.2  	chr7:91906289-92377127(probes 90443:90493)    	chr7:92016059-92377127(probes 90458:90493)    	chr7:91581083-92852636(probes 90407:90532)    	7.6312e-05	  7.6312e-05	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	
peel_off.Harvard_focal_080606	Amplification Peak 9	7q31.2  	chr7:116107046-116295556(probes 92356:92374)	chr7:116143124-116295556(probes 92360:92374)	chr7:116042292-117489163(probes 92352:92498)	2.8185e-11	  2.8185e-11	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	
peel_off.Harvard_focal_080606	Amplification Peak 10	7q36.1  	chr7:151450122-151533386(probes 95371:95377)	chr7:151462970-151533386(probes 95372:95377)	chr7:151045748-152991326(probes 95330:95455)	5.1616e-05	   0.0021096	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Harvard_focal_080606	Amplification Peak 11	11p13   	chr11:32391330-33598206(probes 125998:126108)	chr11:32453028-32474686(probes 126007:126007)	chr11:32391330-32474686(probes 125998:126007)	0.07677	     0.07677	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	
peel_off.Harvard_focal_080606	Amplification Peak 12	12p13.32	chr12:3757530-4698480(probes 133852:133936)    	chr12:3809375-4303445(probes 133857:133892)    	chr12:3809375-4303445(probes 133857:133892)    	0.07677	     0.07677	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Harvard_focal_080606	Amplification Peak 13	12q14.1 	chr12:56378328-56478010(probes 138081:138084)	chr12:56378328-56460711(probes 138081:138081)	chr12:55948031-58236438(probes 138022:138167)	4.3743e-45	  4.3743e-45	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	2	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	2	0	0	0	2	2	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	2	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	
peel_off.Harvard_focal_080606	Amplification Peak 14	12q15   	chr12:67457153-67565838(probes 138825:138834)	chr12:67457153-67556212(probes 138825:138833)	chr12:67041820-69855882(probes 138780:139033)	1.5852e-37	  1.6616e-14	focal	0: t<0.12; 1: 0.12<t< 0.9; 2: t>0.9	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	2	0	0	0	2	2	0	0	2	0	0	2	0	0	2	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	
peel_off.Harvard_focal_080606	Deletion Peak 1	1p36.23 	chr1:8241627-9194570(probes 381:488)            	chr1:8350161-9194570(probes 389:488)            	chr1:7735056-9360697(probes 332:494)            	0.00010318	  0.00010318	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	
peel_off.Harvard_focal_080606	Deletion Peak 2	1p33    	chr1:51014080-51231084(probes 4027:4047)      	chr1:51062679-51218237(probes 4032:4046)      	chr1:50845730-51283189(probes 4010:4049)      	3.3286e-07	  3.3286e-07	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Harvard_focal_080606	Deletion Peak 3	6q26    	chr6:162647400-162943702(probes 83847:83869)	chr6:162681429-162762348(probes 83850:83850)	chr6:162647400-162943702(probes 83847:83869)	0.012146	    0.012146	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Harvard_focal_080606	Deletion Peak 4	9p21.3  	chr9:21958041-21998165(probes 107059:107063)  	chr9:21968346-21993649(probes 107060:107062)  	chr9:19448798-30588348(probes 106824:107496)  	9.0925e-313	 9.0923e-313	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	2	0	0	0	2	0	0	2	2	2	2	2	2	0	0	2	0	0	1	2	2	0	2	0	2	2	0	0	0	1	0	0	2	2	0	0	2	0	0	0	0	0	0	1	2	0	2	0	0	2	2	0	1	0	0	1	2	0	2	0	1	0	2	2	2	2	2	0	2	1	1	0	0	2	0	0	0	2	2	0	2	2	2	2	0	1	1	0	0	2	0	0	2	2	0	2	0	1	0	2	0	0	2	0	0	0	1	0	0	2	2	2	0	0	1	0	0	2	0	1	2	0	2	0	0	0	2	1	2	0	0	2	2	2	0	1	0	2	2	2	1	2	2	0	0	1	2	0	0	1	2	1	2	2	0	1	1	1	2	0	0	0	0	2	2	2	0	2	2	2	1	0	2	0	0	0	1	2	1	2	2	1	2	0	2	2	2	2	2	0	2	2	2	2	0	0	0	
peel_off.Harvard_focal_080606	Deletion Peak 5	10q23.31	chr10:89580501-89643513(probes 119734:119738)	chr10:89594690-89630076(probes 119735:119737)	chr10:89311273-91007118(probes 119706:119853)	9.1672e-21	  9.1673e-21	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	2	0	1	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	
peel_off.Harvard_focal_080606	Deletion Peak 6	13q14.2 	chr13:47845532-48059198(probes 146327:146346)	chr13:47902124-47963280(probes 146334:146339)	chr13:47761536-48059198(probes 146317:146346)	0.00047679	  0.00047679	focal	0: t>-0.12; 1: 0.12>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	
peel_off.Harvard_focal_080606	Amplification Peak 1 - log2 ratios	1p31.1  	chr1:71298556-71322899(probes 5734:5737)      	chr1:71298556-71322899(probes 5734:5737)      	chr1:71298556-71322899(probes 5734:5737)      	0.086361	    0.086361	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1424	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8456	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0178	0	0	0	0	0	0	0.8871	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Harvard_focal_080606	Amplification Peak 2 - log2 ratios	1q32.1  	chr1:202299299-203008525(probes 13579:13648)	chr1:202399046-202814266(probes 13591:13632)	chr1:201327370-203776979(probes 13487:13725)	6.5493e-14	  6.5493e-14	focal	Actual Log2 Ratio Given	0	0	0	1.5419	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5243	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0376	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5082	0	0.7895	0	1.5375	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5624	0	0	0	0	0	0	0	0	0	0	0	0	1.5072	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4352	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5217	0	0	0	0.5049	0	0	0	0	0	0	0	0	0	0	1.5429	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Harvard_focal_080606	Amplification Peak 3 - log2 ratios	1q44    	chr1:241494131-242812046(probes 16505:16621)	chr1:242184885-242812046(probes 16568:16621)	chr1:241494131-242812046(probes 16505:16621)	0.016723	    0.016723	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.3101	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5293	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5324	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5609	0	0	0	0	0	
peel_off.Harvard_focal_080606	Amplification Peak 4 - log2 ratios	2p24.3  	chr2:11979076-20827615(probes 17893:18362)    	chr2:14353787-17013162(probes 18004:18151)    	chr2:11979076-21008079(probes 17893:18372)    	0.01438	     0.01438	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	1.5431	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6685	0	0	0	0	0	0	0	0.7818	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.559	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5037	
peel_off.Harvard_focal_080606	Amplification Peak 5 - log2 ratios	3q26.33 	chr3:182340789-183245653(probes 46707:46750)	chr3:182612379-182775400(probes 46720:46724)	chr3:177640393-185071295(probes 46394:46892)	9.4711e-05	  9.4711e-05	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4461	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5132	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5245	0	0	0	0	0	0.5144	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5364	1.0504	
peel_off.Harvard_focal_080606	Amplification Peak 6 - log2 ratios	4q12    	chr4:54486892-54580397(probes 51320:51330)    	chr4:54507498-54546893(probes 51322:51324)    	chr4:48777988-58291466(probes 51129:51598)    	2.4447e-40	  2.4446e-40	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	1.5431	0	0	0	0	1.4966	0	0	0	0	0	0	1.1058	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5384	0	0	1.5376	0	1.4884	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7262	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4722	0	0	0	0	1.5077	1.5043	0	0	0	0	0	0	0	0	0	0	1.4499	0	0	0	0	0	0	0.7341	1.5227	0	0	1.5125	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.1061	1.5602	0	1.4797	1.4965	0	0	1.5197	0	0	1.5132	0	1.4853	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3218	0	0	0	0	0	0	0	1.5069	0	0	0	0	0	0	0	0	0	0	0	0	0.5831	0	0	0	0	0	0.51229	0	0	0	0	0	0	0	0	0	0	0	0	1.5306	0	0	0	0	0.4318	0	0	
peel_off.Harvard_focal_080606	Amplification Peak 7 - log2 ratios	7p11.2  	chr7:54892257-55065092(probes 88393:88398)    	chr7:54892257-55025313(probes 88393:88394)    	chr7:50422509-62313531(probes 88172:88572)    	1.9174e-232	 1.9175e-232	focal	Actual Log2 Ratio Given	0	1.5439	0	1.5419	1.5587	0	0	0	0	1.4738	1.5979	1.5207	0	0	0	0	0	0	0	0	1.5518	0	1.5448	1.5384	0	1.4461	0	0.7799	0	0	0	0	1.5453	1.4993	0	0	1.5243	0	0	0	0	1.5308	0	0	0	0	1.5348	0	1.5472	0	1.4799	0	0	0	0	0	1.548	0	1.5038	0	1.5417	0	0	1.5898	1.5362	1.5163	1.4945	0	0	0	0	0	0	1.5158	0	0	0	1.4976	1.5231	0	1.204	0	0	1.5412	0	1.507	1.5213	1.5164	0	1.5367	0	1.4779	1.5241	0.674	1.5375	1.5427	1.2755	0	0	0	1.5293	1.4185	0	0	0	0	1.5271	1.5523	1.1765	1.5321	1.539	0	0.3669	0	1.2456	0	0	1.5371	1.5681	0	1.5602	0	1.4797	0	1.5143	0	0	0	0	1.5132	1.5421	0	1.5072	0	0	0	1.5681	1.5473	0	1.5677	1.4606	1.5908	1.4731	0	0	1.4956	1.5993	0	0	1.4352	1.476	1.5522	1.5114	1.4843	0	0	0	0	0	1.5197	0	0	1.5307	1.5245	1.5324	1.5473	1.5566	1.5217	1.5074	0	1.2783	0	1.5283	0	0.8248	0	1.0948	0	0	0	1.5264	0	1.5429	0	0	1.5439	0	0	0	0	1.4803	1.5609	1.5721	1.5153	1.5462	0	1.5037	
peel_off.Harvard_focal_080606	Amplification Peak 8 - log2 ratios	7q21.2  	chr7:91906289-92377127(probes 90443:90493)    	chr7:92016059-92377127(probes 90458:90493)    	chr7:91581083-92852636(probes 90407:90532)    	7.6312e-05	  7.6312e-05	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4155	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8522	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8334	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4965	0	0	0	0	0	1.5132	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.6793	0	0	0	0	0	0	0	0	0	0	0.8549	0	0	0	
peel_off.Harvard_focal_080606	Amplification Peak 9 - log2 ratios	7q31.2  	chr7:116107046-116295556(probes 92356:92374)	chr7:116143124-116295556(probes 92360:92374)	chr7:116042292-117489163(probes 92352:92498)	2.8185e-11	  2.8185e-11	focal	Actual Log2 Ratio Given	0	0	0	0	0	1.1662	0	0	0	0	0	0	1.4966	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7438	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5124	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.2625	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4853	0	1.6072	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5676	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.3659	0	0	1.5462	0	0	
peel_off.Harvard_focal_080606	Amplification Peak 10 - log2 ratios	7q36.1  	chr7:151450122-151533386(probes 95371:95377)	chr7:151462970-151533386(probes 95372:95377)	chr7:151045748-152991326(probes 95330:95455)	5.1616e-05	   0.0021096	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.4135	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8566	0.4134	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8799	0	0	0	0	0	0	1.0508	0	0	0	0	0	1.2255	0	0	0.791	0	0	0	0	0	0	0	0	0	0	0	0	0	0.7313	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Harvard_focal_080606	Amplification Peak 11 - log2 ratios	11p13   	chr11:32391330-33598206(probes 125998:126108)	chr11:32453028-32474686(probes 126007:126007)	chr11:32391330-32474686(probes 125998:126007)	0.07677	     0.07677	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.6025	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.8493	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5462	0	0	
peel_off.Harvard_focal_080606	Amplification Peak 12 - log2 ratios	12p13.32	chr12:3757530-4698480(probes 133852:133936)    	chr12:3809375-4303445(probes 133857:133892)    	chr12:3809375-4303445(probes 133857:133892)    	0.07677	     0.07677	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0321	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5375	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4099	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Harvard_focal_080606	Amplification Peak 13 - log2 ratios	12q14.1 	chr12:56378328-56478010(probes 138081:138084)	chr12:56378328-56460711(probes 138081:138081)	chr12:55948031-58236438(probes 138022:138167)	4.3743e-45	  4.3743e-45	focal	Actual Log2 Ratio Given	0	1.5439	1.5333	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5384	0	0	0	0	0	0	0	1.5214	0	0	0	0	0	1.5376	0	0	0	0	0	0	0	0	0	1.2836	1.5472	0	0	0.6873	0	0	0	0	0	0	0	1.685	0	0	0	0	0	0	0	0	0	0	0	0	1.526	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5164	0	0	0	0	0	0	1.5375	0	1.4559	0	0	0	1.5293	1.5227	0	0	1.5125	0	0	1.5523	0	0	0	0	0	0	0	0	0	0	1.5681	0	0	0	0	1.4965	0	1.5063	0	0	0	1.5132	1.5421	0	0	0	0	0	0	0	0	0	0	0	0	1.4956	0	0	0	0	0	0	1.476	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.0981	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5364	0	
peel_off.Harvard_focal_080606	Amplification Peak 14 - log2 ratios	12q15   	chr12:67457153-67565838(probes 138825:138834)	chr12:67457153-67556212(probes 138825:138833)	chr12:67041820-69855882(probes 138780:139033)	1.5852e-37	  1.6616e-14	focal	Actual Log2 Ratio Given	0	0	1.5333	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.4359	0	0	0	0	1.5202	0	0	0	0	1.5214	0	0	0	0	1.5243	0	0	0	0	0	0	0	0	0	0	1.4942	1.5472	0	0	0	0	0	0	0	0	0	0	-0.6741	0	0	0	0	0	0	0	1.49	0	0	0	1.4653	0	0	1.5181	0	0	0	0	0	0	0	0	0	0	0	0	1.5164	0	0	0	1.4779	0	0	0	0	1.4559	0	0	0	1.5293	1.5227	0	0	1.5125	0	0	1.5523	0	0	1.539	0	0	0	0	0	0	0	1.5681	0	0	0	1.4797	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5416	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.5462	0	0	
peel_off.Harvard_focal_080606	Deletion Peak 1 - log2 ratios	1p36.23 	chr1:8241627-9194570(probes 381:488)            	chr1:8350161-9194570(probes 389:488)            	chr1:7735056-9360697(probes 332:494)            	0.00010318	  0.00010318	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4837	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.7967	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9258	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4007	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4279	0	0	0	0	
peel_off.Harvard_focal_080606	Deletion Peak 2 - log2 ratios	1p33    	chr1:51014080-51231084(probes 4027:4047)      	chr1:51062679-51218237(probes 4032:4046)      	chr1:50845730-51283189(probes 4010:4049)      	3.3286e-07	  3.3286e-07	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4624	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4842	0	0	0	0	0	0	0	0	-1.4957	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4578	0	0	-0.77693	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5147	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.6673	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Harvard_focal_080606	Deletion Peak 3 - log2 ratios	6q26    	chr6:162647400-162943702(probes 83847:83869)	chr6:162681429-162762348(probes 83850:83850)	chr6:162647400-162943702(probes 83847:83869)	0.012146	    0.012146	focal	Actual Log2 Ratio Given	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.1828	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.6837	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9336	0	0	0	0	0	0	0	0	-0.9187	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.9195	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
peel_off.Harvard_focal_080606	Deletion Peak 4 - log2 ratios	9p21.3  	chr9:21958041-21998165(probes 107059:107063)  	chr9:21968346-21993649(probes 107060:107062)  	chr9:19448798-30588348(probes 106824:107496)  	9.0925e-313	 9.0923e-313	focal	Actual Log2 Ratio Given	-1.3773	0	0	0	-1.4413	0	0	-1.4569	-1.4832	-1.5262	-1.4021	-1.4793	-1.5034	0	0	-1.4505	0	0	-1.011	-1.3975	-1.4482	0	-1.4552	0	-1.4728	-1.5539	0	0	0	-0.5048	0	0	-1.3367	-1.3566	0	0	-1.4757	0	0	0	0	0	0	-0.7976	-1.4273	0	-1.4652	0	0	-1.4931	-1.5201	0	-1.0132	0	0	-1.1318	-1.452	0	-1.4962	0	-1.2152	0	-1.4876	-1.4069	-1.4638	-1.4837	-1.5055	0	-1.4167	-0.9009	-1.109	0	0	-1.4842	0	0	0	-1.5024	-1.4769	0	-1.4687	-1.4923	-1.4957	-1.4588	0	-1.1387	-0.3843	0	0	-1.4633	0	0	-1.4759	-1.5189	0	-1.4573	0	-1.1939	0	-1.498	0	0	-1.4604	0	0	0	-0.6941	0	0	-1.4679	-1.461	-1.4578	0	0	-1.0128	0	0	-1.4629	0	-0.8833	-1.4398	0	-1.5203	0	0	0	-1.4803	-1.012	-1.4348	0	0	-1.5147	-1.4928	-1.3928	0	-1.1573	0	-1.4527	-1.4584	-1.4323	-1.1277	-1.4092	-1.5269	0	0	-1.0481	-1.4007	0	0	-1.2594	-1.524	-1.0348	-1.4886	-1.5157	0	-1.1748	-1.1356	-1.2362	-1.5155	0	0	0	0	-1.4755	-1.4676	-1.4527	0	-1.4783	-1.4926	-1.494	-0.7811	0	-1.4717	0	0	0	-0.72381	-1.5328	-0.9328	-1.4102	-1.4736	-0.8128	-1.4571	0	-1.5163	-1.4561	-1.5136	-1.4965	-1.5158	0	-1.5197	-1.4391	-1.4279	-1.4847	0	0	0	
peel_off.Harvard_focal_080606	Deletion Peak 5 - log2 ratios	10q23.31	chr10:89580501-89643513(probes 119734:119738)	chr10:89594690-89630076(probes 119735:119737)	chr10:89311273-91007118(probes 119706:119853)	9.1672e-21	  9.1673e-21	focal	Actual Log2 Ratio Given	0	0	-1.3144	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.1125	0	0	-1.1745	-1.4552	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4918	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5203	0	0	0	0	0	0	0	0	0	0	0	-1.6293	0	-1.2221	-1.4527	-1.4584	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.253	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5687	0	0	0	0	0	0	-0.767	0	0	0	0	0	0	0	0	0	0	0	-1.4847	0	0	0	
peel_off.Harvard_focal_080606	Deletion Peak 6 - log2 ratios	13q14.2 	chr13:47845532-48059198(probes 146327:146346)	chr13:47902124-47963280(probes 146334:146339)	chr13:47761536-48059198(probes 146317:146346)	0.00047679	  0.00047679	focal	Actual Log2 Ratio Given	-0.562	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.8537	-1.6293	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.4554	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.5136	0	0	0	0	0	0	0	0	0	0