Investigation Title	TCGA Analysis of DNA Methylation for Colon Adenocarcinoma (COAD) Using Illumina Infinium Human DNA Methylation 27 platform (HumanMethylation27)				
Experimental Design	disease_state_design				
Experimental Design Term Source REF	MGED Ontology				
Experimental Factor Type	disease	 			
Experimental Factor Type Term Source REF	MGED Ontology				
					
Person Last Name	Laird				
Person First Name	Peter				
Person Mid Initials	W				
Person Email	plaird@usc.edu				
Person Phone	323.442.7890				
Person Address	USC Epigenome Center, University of Southern California, CA 90033, USA				
Person Affiliation	University of Southern California				
Person Roles	submitter				
					
Quality Control Types	real_time_PCR_quality_control				
Quality Control Types Term Source REF	MGED Ontology				
Replicate Type	bioassay_replicate_reduction				
Replicate Type Term Source REF	MGED Ontology
Date of Experiment	May 18, 2010
Public Release Date	Wed May 26 14:59:20 2010
Experiment Description	TCGA Analysis of DNA Methylation for Colon Adenocarcinoma (COAD) Using Illumina Infinium Human DNA Methylation 27 platform				
					
Protocol Name	jhu-usc.edu:labeling:HumanMethylation27:01	jhu-usc.edu:hybridization:HumanMethylation27:01	jhu-usc.edu:image_acquisition:HumanMethylation27:01	jhu-usc.edu:feature_extraction:HumanMethylation27:01	jhu-usc.edu:within_bioassay_data_set_function:HumanMethylation27:01
Protocol Type	labeling	hybridization	scan	feature_extraction	normalization
Protocol Term Source REF	MGED Ontology	MGED Ontology	MGED Ontology	MGED Ontology	MGED Ontology
Protocol Description	Illumina Infinium Human DNA Methylation 27 Labeled Extract	Illumina Infinium Human DNA Methylation 27 Hybridization Protocol	Illumina Infinium Human DNA Methylation 27 Scan Protocol	Illumina Infinium Human DNA Methylation 27 Feature Extraction Protocol	Illumina Infinium Human DNA Methylation 27 Data Transformation
Protocol Parameters				

SDRF Files	jhu-usc.edu_COAD.HumanMethylation27.8.sdrf.txt
Term Source Name	MGED Ontology	caArray	BCR		
Term Source File	http://mged.sourceforge.net/ontologies/MGEDontology.php	http://caarraydb.nci.nih.gov/	http://www.tgen.org		
Term Source Version	1.3.0.1	2007-01	2007-01	
