Case ID	ALAL Subtype	Sample ID	Chromsome	Start	End	CNV Name	CN	Sex	Paired	Size	Cytoband	Gene#	Key Genes
SJMPAL003414	T/M	SJMPAL003414_D2	2	219306293	219501328	hemiLoss	1	Male	No	195,036	q35	4	
SJMPAL003414	T/M	SJMPAL003414_D2	2	1685509	2433702	hemiLoss	1	Male	No	748,194	p25.3	3	
SJMPAL003414	T/M	SJMPAL003414_D2	6	4253912	4479458	hemiLoss	1	Male	No	225,547	p25.1	1	
SJMPAL003414	T/M	SJMPAL003414_D2	7	124810399	127267314	hemiLoss	1	Male	No	2,456,916	q31.33-q32.1	11	
SJMPAL003414	T/M	SJMPAL003414_D2	7	124804778	127267314	hemiLoss	1	Male	No	2,462,537	q31.33-q32.1	11	
SJMPAL003414	T/M	SJMPAL003414_D2	7	49973902	50603379	hemiLoss	1	Male	No	629,478	p12.2-p12.1	6	IKZF1(3)
SJMPAL003414	T/M	SJMPAL003414_D2	8	38277867	40013811	hemiLoss	1	Male	No	1,735,945	p11.23-p11.21	17	FGFR1(1)
SJMPAL003414	T/M	SJMPAL003414_D2	8	17860863	19036043	hemiLoss	1	Male	No	1,175,181	p22-p21.3	6	PCM1(1)
SJMPAL003414	T/M	SJMPAL003414_D2	8	4369308	4559987	hemiLoss	1	Male	No	190,680	p23.2	1	
SJMPAL003414	T/M	SJMPAL003414_D2	9	21397052	22044059	homoLoss	0	Male	No	647,008	p21.3	10	CDKN2A(8);CDKN2B(10)
SJMPAL003414	T/M	SJMPAL003414_D2	9	19452990	22915652	hemiLoss	1	Male	No	3,462,663	p22.1-p21.3	35	MLLT3(2);CDKN2A(31);CDKN2B(33)
SJMPAL003414	T/M	SJMPAL003414_D2	15	27386350	27599625	hemiLoss	1	Male	No	213,276	q12	2	
SJMPAL003414	T/M	SJMPAL003414_D2	19	10864612	11361591	hemiLoss	1	Male	No	496,980	p13.2	16	SMARCA4(10)
SJMPAL003414	T/M	SJMPAL003414_D2	22	20742450	22274745	hemiLoss	1	Male	No	1,532,296	q11.21-q11.22	39	
SJMPAL005001	T/M	SJMPAL005001_R4	1	167251016	249218992	hemiGain	3	Male	No	81,967,977	q24.2-q44	720	
SJMPAL005001	T/M	SJMPAL005001_R4	4	1990425	31590431	hemiLoss	1	Male	No	29,600,007	p16.3-p15.1	172	
SJMPAL005001	T/M	SJMPAL005001_R4	5	19286968	19978126	hemiLoss	1	Male	No	691,159	p14.3	1	
SJMPAL005001	T/M	SJMPAL005001_R4	6	124144049	124973985	hemiLoss	1	Male	No	829,937	q22.31	1	
SJMPAL005001	T/M	SJMPAL005001_R4	6	69844768	122396987	hemiLoss	1	Male	No	52,552,220	q12-q22.31	249	FOXO3(167)
SJMPAL005001	T/M	SJMPAL005001_R4	9	80185929	109885897	hemiLoss	1	Male	No	29,699,969	q21.2-q31.2	224	
SJMPAL005001	T/M	SJMPAL005001_R4	13	62406583	63586831	hemiLoss	1	Male	No	1,180,249	q21.31	3	
SJMPAL005001	T/M	SJMPAL005001_R4	17	52847941	81057996	homoGain	4	Male	No	28,210,056	q22-q25.3	445	
SJMPAL005001	T/M	SJMPAL005001_R4	17	50247116	52787241	hemiGain	3	Male	No	2,540,126	q22	2	
SJMPAL005001	T/M	SJMPAL005001_R4	19	32708251	35003245	hemiLoss	1	Male	No	2,294,995	q13.11	28	
SJMPAL005001	T/M	SJMPAL005001_R4	19	27735604	30856591	hemiLoss	1	Male	No	3,120,988	q11-q12	14	
SJMPAL005001	T/M	SJMPAL005001_R4	19	1533737	2367395	hemiLoss	1	Male	No	833,659	p13.3	34	TCF3(5)
SJMPAL012417	NOS (T/B/M)	SJMPAL012417_D1	1	86345166	89306817	hemiLoss	1	Male	No	2,961,652	p22.3-p22.2	16	
SJMPAL012417	NOS (T/B/M)	SJMPAL012417_D1	4	102092995	104030792	hemiLoss	1	Male	No	1,937,798	q24	15	
SJMPAL012417	NOS (T/B/M)	SJMPAL012417_D1	6	156293423	157454046	hemiLoss	1	Male	No	1,160,624	q25.3	2	ARID1B(1)
SJMPAL012417	NOS (T/B/M)	SJMPAL012417_D1	12	10905253	26863753	hemiLoss	1	Male	No	15,958,501	p13.2-p11.23	122	ETV6(26);CDKN1B(36);AEBP2(84)
SJMPAL012417	NOS (T/B/M)	SJMPAL012417_D1	16	88916734	89101485	hemiLoss	1	Male	No	184,752	q24.3	5	CBFA2T3(4)
SJMPAL012419	B/M	SJMPAL012419_D2	1	186258229	196661613	hemiLoss	1	Male	Yes	10,403,385	q31.1-q31.3	32	
SJMPAL012419	B/M	SJMPAL012419_D2	1	172946916	180269587	hemiLoss	1	Male	Yes	7,322,672	q25.1-q25.2	69	
SJMPAL012419	B/M	SJMPAL012419_D2	1	160459639	168594940	hemiLoss	1	Male	Yes	8,135,302	q23.2-q24.2	105	
SJMPAL012419	B/M	SJMPAL012419_R2	1	91504847	93770334	hemiLoss	1	Male	Yes	2,265,488	p22.2-p22.1	20	
SJMPAL012419	B/M	SJMPAL012419_R2	2	240933308	241034811	hemiLoss	1	Male	Yes	101,504	q37.3	4	
SJMPAL012419	B/M	SJMPAL012419_R2	2	154900325	154988857	hemiLoss	1	Male	Yes	88,533	q24.1	1	
SJMPAL012419	B/M	SJMPAL012419_R2	2	101291137	102205736	hemiLoss	1	Male	Yes	914,600	q11.2	10	
SJMPAL012419	B/M	SJMPAL012419_R2	2	40403104	52696911	hemiLoss	1	Male	Yes	12,293,808	p22.1-p16.3	67	
SJMPAL012419	B/M	SJMPAL012419_D2	2	39819339	44241781	hemiLoss	1	Male	Yes	4,422,443	p22.1-p21	26	
SJMPAL012419	B/M	SJMPAL012419_D2	2	39692393	44232849	hemiLoss	1	Male	Yes	4,540,457	p22.1-p21	26	
SJMPAL012419	B/M	SJMPAL012419_R2	3	176186122	180586525	hemiLoss	1	Male	Yes	4,400,404	q26.32-q26.33	26	TBL1XR1(4)
SJMPAL012419	B/M	SJMPAL012419_D2	3	151987518	152155267	hemiLoss	1	Male	Yes	167,750	q25.1-q25.2	2	MBNL1(1)
SJMPAL012419	B/M	SJMPAL012419_R2	3	151987518	152155267	hemiLoss	1	Male	Yes	167,750	q25.1-q25.2	2	MBNL1(1)
SJMPAL012419	B/M	SJMPAL012419_D2	3	90312903	90501225	homoLoss	0	Male	Yes	188,323	p11.1	0	
SJMPAL012419	B/M	SJMPAL012419_R2	3	90199759	94979186	hemiLoss	1	Male	Yes	4,779,428	p11.1-q11.2	7	
SJMPAL012419	B/M	SJMPAL012419_R2	3	61575424	79892470	hemiLoss	1	Male	Yes	18,317,047	p14.2-p12.2	72	MITF(42);FOXP1(44)
SJMPAL012419	B/M	SJMPAL012419_D2	7	27570892	51767142	hemiLoss	1	Male	Yes	24,196,251	p15.2-p12.1	172	IKZF1(167)
SJMPAL012419	B/M	SJMPAL012419_R2	7	27570892	51767142	hemiLoss	1	Male	Yes	24,196,251	p15.2-p12.1	172	IKZF1(167)
SJMPAL012419	B/M	SJMPAL012419_D2	7	41421	5764201	hemiLoss	1	Male	Yes	5,722,781	p22.3-p22.1	72	
SJMPAL012419	B/M	SJMPAL012419_R2	7	41421	5764201	hemiLoss	1	Male	Yes	5,722,781	p22.3-p22.1	72	
SJMPAL012419	B/M	SJMPAL012419_D2	9	70961350	73422925	hemiLoss	1	Male	Yes	2,461,576	q21.11-q21.12	22	
SJMPAL012419	B/M	SJMPAL012419_R2	9	70961350	73422925	hemiLoss	1	Male	Yes	2,461,576	q21.11-q21.12	22	
SJMPAL012419	B/M	SJMPAL012419_D2	9	24821079	27553876	hemiLoss	1	Male	Yes	2,732,798	p21.3-p21.2	14	
SJMPAL012419	B/M	SJMPAL012419_R2	9	24821079	27553876	hemiLoss	1	Male	Yes	2,732,798	p21.3-p21.2	14	
SJMPAL012419	B/M	SJMPAL012419_D2	9	21702122	24821079	homoLoss	0	Male	Yes	3,118,958	p21.3	10	CDKN2A(3);CDKN2B(5)
SJMPAL012419	B/M	SJMPAL012419_R2	9	21702122	24821079	homoLoss	0	Male	Yes	3,118,958	p21.3	10	CDKN2A(3);CDKN2B(5)
SJMPAL012419	B/M	SJMPAL012419_D2	9	21597008	21702703	hemiLoss	1	Male	Yes	105,696	p21.3	0	
SJMPAL012419	B/M	SJMPAL012419_R2	9	21597008	21702703	hemiLoss	1	Male	Yes	105,696	p21.3	0	
SJMPAL012419	B/M	SJMPAL012419_D2	12	92537956	94569628	hemiLoss	1	Male	Yes	2,031,673	q21.33-q22	18	BTG1(1)
SJMPAL012419	B/M	SJMPAL012419_R2	13	84744607	85407542	hemiLoss	1	Male	Yes	662,936	q31.1	1	
SJMPAL012419	B/M	SJMPAL012419_R2	13	82489971	83301823	hemiLoss	1	Male	Yes	811,853	q31.1	0	
SJMPAL012419	B/M	SJMPAL012419_D2	13	35740877	66280857	hemiLoss	1	Male	Yes	30,539,981	q13.3-q21.32	195	RB1(113)
SJMPAL012419	B/M	SJMPAL012419_R2	13	35740877	66280857	hemiLoss	1	Male	Yes	30,539,981	q13.3-q21.32	195	RB1(113)
SJMPAL012419	B/M	SJMPAL012419_D2	13	28678493	28816762	hemiLoss	1	Male	Yes	138,270	q12.2	2	
SJMPAL012419	B/M	SJMPAL012419_R2	13	28678493	28816762	hemiLoss	1	Male	Yes	138,270	q12.2	2	
SJMPAL012419	B/M	SJMPAL012419_D2	17	29110652	30692396	hemiLoss	1	Male	Yes	1,581,745	q11.2	27	NF1(8);SUZ12(19)
SJMPAL012419	B/M	SJMPAL012419_D2	17	2220	17046024	hemiLoss	1	Male	Yes	17,043,805	p13.3-p11.2	341	TP53(217);GAS7(271);NCOR1(323)
SJMPAL012419	B/M	SJMPAL012419_R2	17	2220	17046024	hemiLoss	1	Male	Yes	17,043,805	p13.3-p11.2	341	TP53(217);GAS7(271);NCOR1(323)
SJMPAL012419	B/M	SJMPAL012419_D2	22	22514064	22522345	hemiLoss	1	Male	Yes	8,282	q11.22	0	VPREB1(Adjacent)
SJMPAL012419	B/M	SJMPAL012419_D2	X	153524621	154921994	homoLOH	2	Male	Yes	1,397,374	q28	47	
SJMPAL012419	B/M	SJMPAL012419_R2	X	153524621	154921994	homoGain	2(gain)	Male	Yes	1,397,374	q28	47	
SJMPAL012419	B/M	SJMPAL012419_R2	X	25799095	27228563	hemiLoss	1	Male	Yes	1,429,469	p21.3	4	
SJMPAL012420	T/M	SJMPAL012420_D2	2	145164543	145247680	hemiLoss	1	Female	Yes	83,138	q22.3	1	
SJMPAL012420	T/M	SJMPAL012420_D3	2	145164543	145247680	hemiLoss	1	Female	Yes	83,138	q22.3	1	
SJMPAL012420	T/M	SJMPAL012420_D2	8	130543651	130639804	hemiGain	3	Female	Yes	96,154	q24.21	0	NME*
SJMPAL012420	T/M	SJMPAL012420_D3	8	130543651	130639804	hemiGain	3	Female	Yes	96,154	q24.21	0	NME*
SJMPAL012421	T/M	SJMPAL012421_D1	11	194441	47790916	homoLOH	2	Female	No	47,596,476	p15.5-p11.2	537	WT1(416);LMO2(433);RAG1(454)
SJMPAL012422	B/M	SJMPAL012422_D1	1	198805715	198901697	hemiLoss	1	Male	Yes	95,983	q32.1	3	
SJMPAL012422	B/M	SJMPAL012422_D1	11	47226383	47659135	hemiLoss	1	Male	Yes	432,753	p11.2	18	
SJMPAL012422	B/M	SJMPAL012422_D1	12	53493387	53883537	hemiLoss	1	Male	Yes	390,151	q13.13	18	
SJMPAL012422	B/M	SJMPAL012422_D1	12	24957708	25098809	hemiLoss	1	Male	Yes	141,102	p12.1	1	
SJMPAL012422	B/M	SJMPAL012422_D1	12	12758162	12871860	homoLoss	0	Male	Yes	113,699	p13.2-p13.1	3	CDKN1B(3)
SJMPAL012422	B/M	SJMPAL012422_D1	12	11808556	12156322	homoLoss	0	Male	Yes	347,767	p13.2	2	ETV6(1)
SJMPAL012422	B/M	SJMPAL012422_D1	12	9137288	20757813	hemiLoss	1	Male	Yes	11,620,526	p13.31-p12.2	130	ETV6(70);CDKN1B(80);AEBP2(128)
SJMPAL012424	KMT2Ar	SJMPAL012424_D2	8	41738814	146364022	hemiGain	3	Male	Yes	104,625,209	p11.21-q24.3	602	MYC(432)
SJMPAL012424	KMT2Ar	SJMPAL012424_D2	8	46246	41595335	homoLOH	2	Male	Yes	41,549,090	p23.3-p11.21	340	PCM1(149);FGFR1(314)
SJMPAL012425	B/M	SJMPAL012425_D2	3	176638068	178267097	hemiLoss	1	Female	Yes	1,629,030	q26.32	7	TBL1XR1(1)
SJMPAL012425	B/M	SJMPAL012425_D3	3	176638068	178267097	hemiLoss	1	Female	Yes	1,629,030	q26.32	7	TBL1XR1(1)
SJMPAL012425	B/M	SJMPAL012425_D4	3	176638068	178267097	hemiLoss	1	Female	Yes	1,629,030	q26.32	7	TBL1XR1(1)
SJMPAL012425	B/M	SJMPAL012425_D2	3	151648958	152327146	hemiLoss	1	Female	Yes	678,189	q25.1-q25.2	3	MBNL1(2)
SJMPAL012425	B/M	SJMPAL012425_D3	3	151648958	152327146	hemiLoss	1	Female	Yes	678,189	q25.1-q25.2	3	MBNL1(2)
SJMPAL012425	B/M	SJMPAL012425_D4	3	151648958	152327146	hemiLoss	1	Female	Yes	678,189	q25.1-q25.2	3	MBNL1(2)
SJMPAL012425	B/M	SJMPAL012425_D2	3	128376674	129140526	hemiLoss	1	Female	Yes	763,853	q21.3	18	
SJMPAL012425	B/M	SJMPAL012425_D3	3	128376674	129140526	hemiLoss	1	Female	Yes	763,853	q21.3	18	
SJMPAL012425	B/M	SJMPAL012425_D4	3	128376674	129140526	hemiLoss	1	Female	Yes	763,853	q21.3	18	
SJMPAL012425	B/M	SJMPAL012425_D2	3	45762725	47791582	hemiLoss	1	Female	Yes	2,028,858	p21.31	39	SETD2(31)
SJMPAL012425	B/M	SJMPAL012425_D3	3	45762725	47791582	hemiLoss	1	Female	Yes	2,028,858	p21.31	39	SETD2(31)
SJMPAL012425	B/M	SJMPAL012425_D4	3	45762725	47791582	hemiLoss	1	Female	Yes	2,028,858	p21.31	39	SETD2(31)
SJMPAL012425	B/M	SJMPAL012425_D2	3	26976847	27038873	hemiLoss	1	Female	Yes	62,027	p24.1	0	
SJMPAL012425	B/M	SJMPAL012425_D3	3	26976847	27038873	hemiLoss	1	Female	Yes	62,027	p24.1	0	
SJMPAL012425	B/M	SJMPAL012425_D4	3	26976847	27038873	hemiLoss	1	Female	Yes	62,027	p24.1	0	
SJMPAL012425	B/M	SJMPAL012425_D2	3	26590813	26780443	hemiLoss	1	Female	Yes	189,631	p24.1	1	
SJMPAL012425	B/M	SJMPAL012425_D3	3	26590813	26780443	hemiLoss	1	Female	Yes	189,631	p24.1	1	
SJMPAL012425	B/M	SJMPAL012425_D4	3	26590813	26780443	hemiLoss	1	Female	Yes	189,631	p24.1	1	
SJMPAL012425	B/M	SJMPAL012425_D2	3	25872276	26504918	hemiLoss	1	Female	Yes	632,643	p24.2-p24.1	1	
SJMPAL012425	B/M	SJMPAL012425_D3	3	25872276	26504918	hemiLoss	1	Female	Yes	632,643	p24.2-p24.1	1	
SJMPAL012425	B/M	SJMPAL012425_D4	3	25872276	26504918	hemiLoss	1	Female	Yes	632,643	p24.2-p24.1	1	
SJMPAL012425	B/M	SJMPAL012425_D2	3	6185577	6268355	hemiGain	3	Female	Yes	82,779	p26.1	0	
SJMPAL012425	B/M	SJMPAL012425_D3	3	6185577	6268355	hemiGain	3	Female	Yes	82,779	p26.1	0	
SJMPAL012425	B/M	SJMPAL012425_D4	3	6185577	6268355	hemiGain	3	Female	Yes	82,779	p26.1	0	
SJMPAL012425	B/M	SJMPAL012425_D2	4	58405389	59008412	hemiLoss	1	Female	Yes	603,024	q12	0	
SJMPAL012425	B/M	SJMPAL012425_D3	4	58405389	59008412	hemiLoss	1	Female	Yes	603,024	q12	0	
SJMPAL012425	B/M	SJMPAL012425_D4	4	58405389	59008412	hemiLoss	1	Female	Yes	603,024	q12	0	
SJMPAL012425	B/M	SJMPAL012425_D2	6	119306412	123945300	hemiLoss	1	Female	Yes	4,638,889	q22.31	15	
SJMPAL012425	B/M	SJMPAL012425_D3	6	119306412	123945300	hemiLoss	1	Female	Yes	4,638,889	q22.31	15	
SJMPAL012425	B/M	SJMPAL012425_D4	6	119306412	123945300	hemiLoss	1	Female	Yes	4,638,889	q22.31	15	
SJMPAL012425	B/M	SJMPAL012425_D2	6	95951267	116076012	hemiLoss	1	Female	Yes	20,124,746	q16.1-q22.1	96	FOXO3(52)
SJMPAL012425	B/M	SJMPAL012425_D3	6	95951267	116076012	hemiLoss	1	Female	Yes	20,124,746	q16.1-q22.1	96	FOXO3(52)
SJMPAL012425	B/M	SJMPAL012425_D4	6	95951267	116076012	hemiLoss	1	Female	Yes	20,124,746	q16.1-q22.1	96	FOXO3(52)
SJMPAL012425	B/M	SJMPAL012425_D2	6	93408386	95576368	hemiLoss	1	Female	Yes	2,167,983	q16.1	2	
SJMPAL012425	B/M	SJMPAL012425_D3	6	93408386	95576368	hemiLoss	1	Female	Yes	2,167,983	q16.1	2	
SJMPAL012425	B/M	SJMPAL012425_D4	6	93408386	95576368	hemiLoss	1	Female	Yes	2,167,983	q16.1	2	
SJMPAL012425	B/M	SJMPAL012425_D2	7	155349058	155637716	hemiLoss	1	Female	Yes	288,659	q36.3	3	
SJMPAL012425	B/M	SJMPAL012425_D3	7	155349058	155637716	hemiLoss	1	Female	Yes	288,659	q36.3	3	
SJMPAL012425	B/M	SJMPAL012425_D4	7	155349058	155637716	hemiLoss	1	Female	Yes	288,659	q36.3	3	
SJMPAL012425	B/M	SJMPAL012425_D2	7	152003627	154553149	hemiLoss	1	Female	Yes	2,549,523	q36.1-q36.2	7	KMT2C(1)
SJMPAL012425	B/M	SJMPAL012425_D3	7	152003627	154553149	hemiLoss	1	Female	Yes	2,549,523	q36.1-q36.2	7	KMT2C(1)
SJMPAL012425	B/M	SJMPAL012425_D4	7	152003627	154553149	hemiLoss	1	Female	Yes	2,549,523	q36.1-q36.2	7	KMT2C(1)
SJMPAL012425	B/M	SJMPAL012425_D2	7	144444894	144926405	hemiLoss	1	Female	Yes	481,512	q35	1	
SJMPAL012425	B/M	SJMPAL012425_D3	7	144444894	144926405	hemiLoss	1	Female	Yes	481,512	q35	1	
SJMPAL012425	B/M	SJMPAL012425_D4	7	144444894	144926405	hemiLoss	1	Female	Yes	481,512	q35	1	
SJMPAL012425	B/M	SJMPAL012425_D2	7	19734101	30519030	hemiLoss	1	Female	Yes	10,784,930	p21.1-p14.3	102	
SJMPAL012425	B/M	SJMPAL012425_D3	7	19734101	30519030	hemiLoss	1	Female	Yes	10,784,930	p21.1-p14.3	102	
SJMPAL012425	B/M	SJMPAL012425_D4	7	19734101	30519030	hemiLoss	1	Female	Yes	10,784,930	p21.1-p14.3	102	
SJMPAL012425	B/M	SJMPAL012425_D2	8	26319398	26327722	hemiLoss	1	Female	Yes	8,325	p21.2	0	
SJMPAL012425	B/M	SJMPAL012425_D3	8	26319398	26327722	hemiLoss	1	Female	Yes	8,325	p21.2	0	
SJMPAL012425	B/M	SJMPAL012425_D4	8	26319398	26327722	hemiLoss	1	Female	Yes	8,325	p21.2	0	
SJMPAL012425	B/M	SJMPAL012425_D2	8	22977170	26236978	hemiLoss	1	Female	Yes	3,259,809	p21.3-p21.2	27	
SJMPAL012425	B/M	SJMPAL012425_D3	8	22977170	26236978	hemiLoss	1	Female	Yes	3,259,809	p21.3-p21.2	27	
SJMPAL012425	B/M	SJMPAL012425_D4	8	22977170	26236978	hemiLoss	1	Female	Yes	3,259,809	p21.3-p21.2	27	
SJMPAL012425	B/M	SJMPAL012425_D2	9	36877823	37026000	hemiLoss	1	Female	Yes	148,178	p13.2	2	PAX5(1)
SJMPAL012425	B/M	SJMPAL012425_D3	9	36877823	37026000	hemiLoss	1	Female	Yes	148,178	p13.2	2	PAX5(1)
SJMPAL012425	B/M	SJMPAL012425_D4	9	36877823	37026000	hemiLoss	1	Female	Yes	148,178	p13.2	2	PAX5(1)
SJMPAL012425	B/M	SJMPAL012425_D2	9	26379053	27627074	hemiLoss	1	Female	Yes	1,248,022	p21.2	11	
SJMPAL012425	B/M	SJMPAL012425_D3	9	26379053	27627074	hemiLoss	1	Female	Yes	1,248,022	p21.2	11	
SJMPAL012425	B/M	SJMPAL012425_D4	9	26379053	27627074	hemiLoss	1	Female	Yes	1,248,022	p21.2	11	
SJMPAL012425	B/M	SJMPAL012425_D2	9	22012566	23351071	hemiLoss	1	Female	Yes	1,338,506	p21.3	3	
SJMPAL012425	B/M	SJMPAL012425_D3	9	22012566	23351071	hemiLoss	1	Female	Yes	1,338,506	p21.3	3	
SJMPAL012425	B/M	SJMPAL012425_D4	9	22012566	23351071	hemiLoss	1	Female	Yes	1,338,506	p21.3	3	
SJMPAL012425	B/M	SJMPAL012425_D2	9	21779031	22012422	homoLoss	0	Female	Yes	233,392	p21.3	5	CDKN2A(3);CDKN2B(5)
SJMPAL012425	B/M	SJMPAL012425_D3	9	21779031	22012422	homoLoss	0	Female	Yes	233,392	p21.3	5	CDKN2A(3);CDKN2B(5)
SJMPAL012425	B/M	SJMPAL012425_D4	9	21779031	22012422	homoLoss	0	Female	Yes	233,392	p21.3	5	CDKN2A(3);CDKN2B(5)
SJMPAL012425	B/M	SJMPAL012425_D2	9	21189156	21777596	hemiLoss	1	Female	Yes	588,441	p21.3	16	
SJMPAL012425	B/M	SJMPAL012425_D3	9	21189156	21777596	hemiLoss	1	Female	Yes	588,441	p21.3	16	
SJMPAL012425	B/M	SJMPAL012425_D4	9	21189156	21777596	hemiLoss	1	Female	Yes	588,441	p21.3	16	
SJMPAL012425	B/M	SJMPAL012425_D2	9	15169211	17664191	hemiLoss	1	Female	Yes	2,494,981	p22.3-p22.2	8	PSIP1(3)
SJMPAL012425	B/M	SJMPAL012425_D3	9	15169211	17664191	hemiLoss	1	Female	Yes	2,494,981	p22.3-p22.2	8	PSIP1(3)
SJMPAL012425	B/M	SJMPAL012425_D4	9	15169211	17664191	hemiLoss	1	Female	Yes	2,494,981	p22.3-p22.2	8	PSIP1(3)
SJMPAL012425	B/M	SJMPAL012425_D2	10	111886089	112814797	hemiLoss	1	Female	Yes	928,709	q25.1-q25.2	12	
SJMPAL012425	B/M	SJMPAL012425_D3	10	111886089	112814797	hemiLoss	1	Female	Yes	928,709	q25.1-q25.2	12	
SJMPAL012425	B/M	SJMPAL012425_D4	10	111886089	112814797	hemiLoss	1	Female	Yes	928,709	q25.1-q25.2	12	
SJMPAL012425	B/M	SJMPAL012425_D2	10	96632253	99194673	hemiLoss	1	Female	Yes	2,562,421	q23.33-q24.1	31	
SJMPAL012425	B/M	SJMPAL012425_D3	10	96632253	99194673	hemiLoss	1	Female	Yes	2,562,421	q23.33-q24.1	31	
SJMPAL012425	B/M	SJMPAL012425_D4	10	96632253	99194673	hemiLoss	1	Female	Yes	2,562,421	q23.33-q24.1	31	
SJMPAL012425	B/M	SJMPAL012425_D2	12	10033226	16347308	hemiLoss	1	Female	Yes	6,314,083	p13.31-p12.3	99	ETV6(51);CDKN1B(61)
SJMPAL012425	B/M	SJMPAL012425_D3	12	10033226	16347308	hemiLoss	1	Female	Yes	6,314,083	p13.31-p12.3	99	ETV6(51);CDKN1B(61)
SJMPAL012425	B/M	SJMPAL012425_D4	12	10033226	16347308	hemiLoss	1	Female	Yes	6,314,083	p13.31-p12.3	99	ETV6(51);CDKN1B(61)
SJMPAL012425	B/M	SJMPAL012425_D2	13	32920618	55389385	hemiLoss	1	Female	Yes	22,468,768	q13.1-q21.1	188	RB1(125)
SJMPAL012425	B/M	SJMPAL012425_D3	13	32920618	55389385	hemiLoss	1	Female	Yes	22,468,768	q13.1-q21.1	188	RB1(125)
SJMPAL012425	B/M	SJMPAL012425_D4	13	32920618	55389385	hemiLoss	1	Female	Yes	22,468,768	q13.1-q21.1	188	RB1(125)
SJMPAL012425	B/M	SJMPAL012425_D2	20	14579703	16755810	hemiLoss	1	Female	Yes	2,176,108	p12.1	6	
SJMPAL012425	B/M	SJMPAL012425_D3	20	14579703	16755810	hemiLoss	1	Female	Yes	2,176,108	p12.1	6	
SJMPAL012425	B/M	SJMPAL012425_D4	20	14579703	16755810	hemiLoss	1	Female	Yes	2,176,108	p12.1	6	
SJMPAL012427	T/M	SJMPAL012427_D1	2	205674952	243068869	hemiLoss	1	Female	No	37,393,918	q33.3-q37.3	347	IKZF2(54)
SJMPAL012427	T/M	SJMPAL012427_D1	2	202050677	202659046	hemiLoss	1	Female	No	608,370	q33.1	9	CASP8(2)
SJMPAL012427	T/M	SJMPAL012427_D1	3	60661	49393607	homoLOH	2	Female	No	49,332,947	p26.3-p21.31	409	PPARG(86);SETD2(345)
SJMPAL012427	T/M	SJMPAL012427_D1	4	115678239	190986338	hemiGain	3	Female	No	75,308,100	q26-q35.2	317	FBXW7(144)
SJMPAL012427	T/M	SJMPAL012427_D1	4	113546107	114635433	hemiGain	3	Female	No	1,089,327	q25-q26	11	
SJMPAL012427	T/M	SJMPAL012427_D1	5	109775047	180700260	hemiLoss	1	Female	No	70,925,214	q22.1-q35.3	657	EBF1(450);TLX3(511)
SJMPAL012427	T/M	SJMPAL012427_D1	6	67011900	67048885	homoLoss	0	Female	No	36,986	q12	0	
SJMPAL012427	T/M	SJMPAL012427_D1	13	81722228	115103529	hemiGain	3	Female	No	33,381,302	q31.1-q34	184	
SJMPAL016108	T/M	SJMPAL016108_D1	1	227318028	229693132	hemiLoss	1	Female	No	2,375,105	q42.13	40	
SJMPAL016108	T/M	SJMPAL016108_D1	1	208346777	209989270	hemiLoss	1	Female	No	1,642,494	q32.2	11	
SJMPAL016108	T/M	SJMPAL016108_D1	1	190920467	193649198	hemiLoss	1	Female	No	2,728,732	q31.2	14	
SJMPAL016108	T/M	SJMPAL016108_D1	1	4723046	6750710	hemiLoss	1	Female	No	2,027,665	p36.32-p36.31	26	
SJMPAL016108	T/M	SJMPAL016108_D1	1	1451380	2383438	hemiLoss	1	Female	No	932,059	NA-p36.32	24	
SJMPAL016108	T/M	SJMPAL016108_D1	3	69645976	71755488	hemiLoss	1	Female	No	2,109,513	p14.1-p13	6	MITF(1);FOXP1(3)
SJMPAL016108	T/M	SJMPAL016108_D1	3	67132470	69160162	hemiLoss	1	Female	No	2,027,693	p14.1	11	
SJMPAL016108	T/M	SJMPAL016108_D1	3	46413334	48092092	hemiLoss	1	Female	No	1,678,759	p21.31	32	SETD2(21)
SJMPAL016108	T/M	SJMPAL016108_D1	3	42388026	44270812	hemiLoss	1	Female	No	1,882,787	p22.1-p21.31	26	
SJMPAL016108	T/M	SJMPAL016108_D1	3	14330296	19102359	hemiLoss	1	Female	No	4,772,064	p25.1-p24.3	34	
SJMPAL016108	T/M	SJMPAL016108_D1	4	66318314	67082987	hemiLoss	1	Female	No	764,674	q13.1-q13.2	2	
SJMPAL016108	T/M	SJMPAL016108_D1	4	29388888	29785611	hemiLoss	1	Female	No	396,724	p15.1	0	
SJMPAL016108	T/M	SJMPAL016108_D1	6	37659300	38689875	hemiLoss	1	Female	No	1,030,576	p21.2	5	
SJMPAL016108	T/M	SJMPAL016108_D1	6	7250960	9066118	hemiLoss	1	Female	No	1,815,159	p24.3	17	
SJMPAL016108	T/M	SJMPAL016108_D1	7	143425361	155428591	hemiLoss	1	Female	No	12,003,231	q35-q36.3	115	EZH2(34);KMT2C(100)
SJMPAL016108	T/M	SJMPAL016108_D1	7	123097194	126381249	hemiGain	3	Female	No	3,284,056	q31.32-q31.33	19	
SJMPAL016108	T/M	SJMPAL016108_D1	7	118742974	123092969	hemiLoss	1	Female	No	4,349,996	q31.31-q31.32	16	
SJMPAL016108	T/M	SJMPAL016108_D1	7	100364552	118572158	hemiLoss	1	Female	No	18,207,607	q22.1-q31.31	136	CUX1(29)
SJMPAL016108	T/M	SJMPAL016108_D1	7	86502733	100361675	hemiGain	3	Female	No	13,858,943	q21.12-q22.1	167	
SJMPAL016108	T/M	SJMPAL016108_D1	7	86152595	86194051	hemiLoss	1	Female	No	41,457	q21.11	0	
SJMPAL016108	T/M	SJMPAL016108_D1	7	85849213	86150075	hemiGain	3	Female	No	300,863	q21.11	0	
SJMPAL016108	T/M	SJMPAL016108_D1	7	83515095	85841693	hemiLoss	1	Female	No	2,326,599	q21.11	3	
SJMPAL016108	T/M	SJMPAL016108_D1	9	97920712	108583206	hemiLoss	1	Female	No	10,662,495	q22.32-q31.2	94	
SJMPAL016108	T/M	SJMPAL016108_D1	10	63307297	135508269	hemiGain	3	Female	No	72,200,973	q21.2-q26.3	639	
SJMPAL016108	T/M	SJMPAL016108_D1	11	122337411	124288491	hemiLoss	1	Female	No	1,951,081	q24.1-q24.2	30	
SJMPAL016108	T/M	SJMPAL016108_D1	11	85967064	118074337	hemiLoss	1	Female	No	32,107,274	q14.2-q23.3	230	EED(1)
SJMPAL016108	T/M	SJMPAL016108_D1	11	64769731	65558997	hemiLoss	1	Female	No	789,267	q13.1	47	
SJMPAL016108	T/M	SJMPAL016108_D1	12	120595678	121128137	hemiLoss	1	Female	No	532,460	q24.23-q24.31	18	
SJMPAL016108	T/M	SJMPAL016108_D1	13	111352207	111641588	hemiLoss	1	Female	No	289,382	q34	5	
SJMPAL016108	T/M	SJMPAL016108_D1	13	37655553	82924724	hemiLoss	1	Female	No	45,269,172	q13.3-q31.1	237	RB1(97)
SJMPAL016108	T/M	SJMPAL016108_D1	19	42147477	44126279	hemiLoss	1	Female	No	1,978,803	q13.2-q13.31	60	
SJMPAL016108	T/M	SJMPAL016108_D1	19	41449603	41510030	hemiLoss	1	Female	No	60,428	q13.2	2	
SJMPAL016108	T/M	SJMPAL016108_D1	19	30448600	34020401	hemiLoss	1	Female	No	3,571,802	q12-q13.11	26	
SJMPAL016108	T/M	SJMPAL016108_D1	19	4626890	4791512	hemiLoss	1	Female	No	164,623	p13.3	6	
SJMPAL016108	T/M	SJMPAL016108_D1	21	29987874	30368023	hemiLoss	1	Female	No	380,150	q21.3	2	
SJMPAL016108	T/M	SJMPAL016108_D1	X	2699676	154921994	hemiGain	3	Female	No	152,222,319	p22.33-q28	1049	KDM6A(209);PHF6(802)
SJMPAL016340	T/M	SJMPAL016340_D1	1	38804625	45187539	hemiGain	3	Male	No	6,382,915	p34.3-p34.1	103	
SJMPAL016340	T/M	SJMPAL016340_D1	1	13789965	35058101	hemiGain	3	Male	No	21,268,137	p36.21-p34.3	341	ARID1A(215)
SJMPAL016340	T/M	SJMPAL016340_D1	1	82154	12919928	hemiLoss	1	Male	No	12,837,775	NA-p36.21	224	
SJMPAL016340	T/M	SJMPAL016340_D1	9	65629772	141101939	homoLOH	2	Male	No	75,472,168	q12-q34.3	754	
SJMPAL016340	T/M	SJMPAL016340_D1	17	32656602	81057996	hemiGain	3	Male	No	48,401,395	q12-q25.3	927	
SJMPAL016340	T/M	SJMPAL016340_D1	17	30420786	31855826	hemiGain	3	Male	No	1,435,041	q11.2-q12	12	
SJMPAL016340	T/M	SJMPAL016340_D1	17	25264289	26134711	hemiGain	3	Male	No	870,423	q11.1-q11.2	6	
SJMPAL016340	T/M	SJMPAL016340_D1	17	8802655	10123564	hemiGain	3	Male	No	1,320,910	p13.1	10	GAS7(10)
SJMPAL016340	T/M	SJMPAL016340_D1	17	2220	8801138	hemiLoss	1	Male	No	8,798,919	p13.3-p13.1	262	TP53(217)
SJMPAL016343	T/M	SJMPAL016343_R2	2	213829682	213911121	hemiGain	3	Female	Yes	81,440	q34	1	IKZF2(1)
SJMPAL016343	T/M	SJMPAL016343_R3	2	213829682	213911121	hemiGain	3	Female	Yes	81,440	q34	1	IKZF2(1)
SJMPAL016343	T/M	SJMPAL016343_D1	7	50161691	50716516	hemiLoss	1	Female	Yes	554,826	p12.2-p12.1	6	IKZF1(2)
SJMPAL016343	T/M	SJMPAL016343_R2	7	50161691	50716516	hemiLoss	1	Female	Yes	554,826	p12.2-p12.1	6	IKZF1(2)
SJMPAL016343	T/M	SJMPAL016343_R3	7	50161691	50716516	hemiLoss	1	Female	Yes	554,826	p12.2-p12.1	6	IKZF1(2)
SJMPAL016343	T/M	SJMPAL016343_R2	10	94316	135534747	hemiGain	3	Female	Yes	135,440,432	p15.3-q26.3	1028	WAC(200)
SJMPAL016343	T/M	SJMPAL016343_R3	10	94316	135534747	hemiGain	3	Female	Yes	135,440,432	p15.3-q26.3	1028	WAC(200)
SJMPAL016343	T/M	SJMPAL016343_D1	15	48152079	49227821	hemiLoss	1	Female	Yes	1,075,743	q21.1	9	
SJMPAL016343	T/M	SJMPAL016343_R2	15	48152079	49227821	hemiLoss	1	Female	Yes	1,075,743	q21.1	9	
SJMPAL016343	T/M	SJMPAL016343_R3	15	48152079	49227821	hemiLoss	1	Female	Yes	1,075,743	q21.1	9	
SJMPAL016343	T/M	SJMPAL016343_D1	15	43711876	47920108	hemiLoss	1	Female	Yes	4,208,233	q15.3-q21.1	47	
SJMPAL016343	T/M	SJMPAL016343_R2	15	43711876	47920108	hemiLoss	1	Female	Yes	4,208,233	q15.3-q21.1	47	
SJMPAL016343	T/M	SJMPAL016343_R3	15	43711876	47920108	hemiLoss	1	Female	Yes	4,208,233	q15.3-q21.1	47	
SJMPAL016343	T/M	SJMPAL016343_D1	15	20005287	41276158	hemiLoss	1	Female	Yes	21,270,872	q11.1-q15.1	253	
SJMPAL016343	T/M	SJMPAL016343_R2	15	20005287	41276158	hemiLoss	1	Female	Yes	21,270,872	q11.1-q15.1	253	
SJMPAL016343	T/M	SJMPAL016343_R3	15	20005287	41276158	hemiLoss	1	Female	Yes	21,270,872	q11.1-q15.1	253	
SJMPAL016343	T/M	SJMPAL016343_D1	17	68754318	73175294	hemiLoss	1	Female	Yes	4,420,977	q24.3-q25.1	57	
SJMPAL016343	T/M	SJMPAL016343_R2	17	68754318	73175294	hemiLoss	1	Female	Yes	4,420,977	q24.3-q25.1	57	
SJMPAL016343	T/M	SJMPAL016343_R3	17	68754318	73175294	hemiLoss	1	Female	Yes	4,420,977	q24.3-q25.1	57	
SJMPAL016343	T/M	SJMPAL016343_D1	17	29015932	33599558	hemiLoss	1	Female	Yes	4,583,627	q11.2-q12	55	NF1(9);SUZ12(20)
SJMPAL016343	T/M	SJMPAL016343_R2	17	29015932	33599558	hemiLoss	1	Female	Yes	4,583,627	q11.2-q12	55	NF1(9);SUZ12(20)
SJMPAL016343	T/M	SJMPAL016343_R3	17	29015932	33599558	hemiLoss	1	Female	Yes	4,583,627	q11.2-q12	55	NF1(9);SUZ12(20)
SJMPAL016343	T/M	SJMPAL016343_D1	17	9538649	21322821	hemiLoss	1	Female	Yes	11,784,173	p13.1-p11.2	155	GAS7(6);NCOR1(58)
SJMPAL016343	T/M	SJMPAL016343_R2	17	9538649	21322821	hemiLoss	1	Female	Yes	11,784,173	p13.1-p11.2	155	GAS7(6);NCOR1(58)
SJMPAL016343	T/M	SJMPAL016343_R3	17	9538649	21322821	hemiLoss	1	Female	Yes	11,784,173	p13.1-p11.2	155	GAS7(6);NCOR1(58)
SJMPAL016343	T/M	SJMPAL016343_D1	17	2220	6776894	hemiLoss	1	Female	Yes	6,774,675	p13.3-p13.1	156	
SJMPAL016343	T/M	SJMPAL016343_R2	17	2220	6776894	hemiLoss	1	Female	Yes	6,774,675	p13.3-p13.1	156	
SJMPAL016343	T/M	SJMPAL016343_R3	17	2220	6776894	hemiLoss	1	Female	Yes	6,774,675	p13.3-p13.1	156	
SJMPAL016344	T/M	SJMPAL016344_D1	7	41581421	57393926	hemiLoss	1	Female	No	15,812,506	p14.1-p11.2	112	IKZF1(73)
SJMPAL016344	T/M	SJMPAL016344_D1	9	22307793	22442343	hemiLoss	1	Female	No	134,551	p21.3	0	
SJMPAL016344	T/M	SJMPAL016344_D1	9	21635153	22305138	homoLoss	0	Female	No	669,986	p21.3	5	CDKN2A(3);CDKN2B(5)
SJMPAL016344	T/M	SJMPAL016344_D1	9	19635062	21626953	hemiLoss	1	Female	No	1,991,892	p22.1-p21.3	28	MLLT3(2)
SJMPAL016447	T/M	SJMPAL016447_D2	9	131464046	134025595	hemiLoss	1	Male	No	2,561,550	q34.11-q34.13	48	
SJMPAL016447	T/M	SJMPAL016447_D3	9	131464046	134025595	hemiLoss	1	Male	No	2,561,550	q34.11-q34.13	48	
SJMPAL016447	T/M	SJMPAL016447_D4	9	131464046	134025595	hemiLoss	1	Male	No	2,561,550	q34.11-q34.13	48	
SJMPAL016447	T/M	SJMPAL016447_D2	12	163819	23908153	hemiLoss	1	Male	No	23,744,335	p13.33-p12.1	297	ETV6(217);CDKN1B(227);AEBP2(275)
SJMPAL016447	T/M	SJMPAL016447_D3	12	163819	23908153	hemiLoss	1	Male	No	23,744,335	p13.33-p12.1	297	ETV6(217);CDKN1B(227);AEBP2(275)
SJMPAL016447	T/M	SJMPAL016447_D4	12	163819	23908153	hemiLoss	1	Male	No	23,744,335	p13.33-p12.1	297	ETV6(217);CDKN1B(227);AEBP2(275)
SJMPAL016447	T/M	SJMPAL016447_D2	18	13697	13585010	hemiLoss	1	Male	No	13,571,314	p11.32-p11.21	95	PTPN2(90)
SJMPAL016447	T/M	SJMPAL016447_D3	18	13697	13585010	hemiLoss	1	Male	No	13,571,314	p11.32-p11.21	95	PTPN2(90)
SJMPAL016447	T/M	SJMPAL016447_D4	18	13697	13585010	hemiLoss	1	Male	No	13,571,314	p11.32-p11.21	95	PTPN2(90)
SJMPAL016447	T/M	SJMPAL016447_D2	X	34471613	34541795	hemiLoss	1	Male	No	70,183	p21.1	0	
SJMPAL016447	T/M	SJMPAL016447_D3	X	34471613	34541795	hemiLoss	1	Male	No	70,183	p21.1	0	
SJMPAL016447	T/M	SJMPAL016447_D4	X	34471613	34541795	hemiLoss	1	Male	No	70,183	p21.1	0	
SJMPAL016448	B/M	SJMPAL016448_D1	2	216002124	243068869	hemiLoss	1	Male	No	27,066,746	q35-q37.3	286	
SJMPAL016448	B/M	SJMPAL016448_D1	3	112055793	112218408	hemiLoss	1	Male	No	162,616	q13.2	2	BTLA(2)
SJMPAL016448	B/M	SJMPAL016448_D1	4	18058	12722834	hemiGain	3	Male	No	12,704,777	p16.3-p15.33	147	
SJMPAL016448	B/M	SJMPAL016448_D1	8	19266727	19609029	hemiLoss	1	Male	No	342,303	p21.3	1	
SJMPAL016448	B/M	SJMPAL016448_D1	9	21974218	22008026	homoLoss	0	Male	No	33,809	p21.3	3	CDKN2A(1);CDKN2B(3)
SJMPAL016448	B/M	SJMPAL016448_D1	9	46587	37213151	homoLOH	2	Male	No	37,166,565	p24.3-p13.2	241	PSIP1(65);MLLT3(82);CDKN2A(111);CDKN2B(113);PAX5(237)
SJMPAL016448	B/M	SJMPAL016448_D1	11	63957070	64032041	homoLoss	0	Male	No	74,972	q13.1	9	
SJMPAL016448	B/M	SJMPAL016448_D1	12	92278448	92537956	hemiLoss	1	Male	No	259,509	q21.33	2	BTG1(2)
SJMPAL016448	B/M	SJMPAL016448_D1	12	31840727	32112292	hemiLoss	1	Male	No	271,566	p11.21	2	
SJMPAL016448	B/M	SJMPAL016448_D1	13	65124700	65579775	hemiLoss	1	Male	No	455,076	q21.31	0	
SJMPAL016448	B/M	SJMPAL016448_D1	20	34079200	34476931	hemiLoss	1	Male	No	397,732	q11.22-q11.23	11	
SJMPAL016448	B/M	SJMPAL016448_D1	20	10416440	10455385	homoLoss	0	Male	No	38,946	p12.2	1	SLX4IP(1)
SJMPAL016448	B/M	SJMPAL016448_D1	22	22388006	22522587	hemiLoss	1	Male	No	134,582	q11.22	0	VPREB1(Adjacent)
SJMPAL016449	B/M	SJMPAL016449_D1	1	166997079	249218992	homoLOH	2	Female	No	82,221,914	q24.1-q44	723	
SJMPAL016449	B/M	SJMPAL016449_D1	1	82154	166997079	hemiLoss	1	Female	No	166,914,926	NA-q24.1	1866	ARID1A(456)
SJMPAL016449	B/M	SJMPAL016449_D1	2	14238	243068869	hemiLoss	1	Female	No	243,054,632	p25.3-q37.3	1663	LRP1B(972);CASP8(1289);IKZF2(1370)
SJMPAL016449	B/M	SJMPAL016449_D1	3	60661	197891568	hemiLoss	1	Female	No	197,830,908	p26.3-q29	1444	PPARG(86);SETD2(345);FHIT(567);MITF(610);FOXP1(612);BTLA(760);MBNL1(1105);TBL1XR1(1227)
SJMPAL016449	B/M	SJMPAL016449_D1	4	75182428	190986338	hemiLoss	1	Female	No	115,803,911	q13.3-q35.2	551	RAP1GDS1(132);LEF1(196);FBXW7(378)
SJMPAL016449	B/M	SJMPAL016449_D1	5	14159	180700260	hemiLoss	1	Female	No	180,686,102	p15.33-q35.3	1185	MEF2C(460);EBF1(978);TLX3(1039)
SJMPAL016449	B/M	SJMPAL016449_D1	6	108666	170919470	hemiLoss	1	Female	No	170,810,805	p25.3-q27	1343	FOXO3(947);MYB(1112);ARID1B(1235)
SJMPAL016449	B/M	SJMPAL016449_D1	7	41421	159126310	hemiLoss	1	Female	No	159,084,890	p22.3-q36.3	1231	IKZF1(381);CUX1(772);EZH2(1124);KMT2C(1190)
SJMPAL016449	B/M	SJMPAL016449_D1	8	130541457	130712714	hemiGain	3	Female	No	171,258	q24.21	0	NME*
SJMPAL016449	B/M	SJMPAL016449_D1	8	46246	146301427	hemiLoss	1	Female	No	146,255,182	p23.3-q24.3	941	PCM1(149);FGFR1(314);MYC(771)
SJMPAL016449	B/M	SJMPAL016449_D1	9	46587	141101939	hemiLoss	1	Female	No	141,055,353	p24.3-q34.3	1046	PSIP1(65);MLLT3(82);CDKN2A(111);CDKN2B(113);PAX5(237)
SJMPAL016449	B/M	SJMPAL016449_D1	11	194441	134944379	hemiLoss	1	Female	No	134,749,939	p15.5-q25	1584	WT1(416);LMO2(433);RAG1(454);PICALM(1158);EED(1159);KMT2A(1397)
SJMPAL016449	B/M	SJMPAL016449_D1	12	163819	133779375	hemiLoss	1	Female	No	133,615,557	p13.33-q24.33	1296	ETV6(217);CDKN1B(227);AEBP2(275);BTG1(875);SH2B3(1057)
SJMPAL016449	B/M	SJMPAL016449_D1	13	19058717	115103529	hemiLoss	1	Female	No	96,044,813	q11-q34	568	CDX2(87);FLT3(89);RB1(244)
SJMPAL016449	B/M	SJMPAL016449_D1	15	20005287	102520751	hemiLoss	1	Female	No	82,515,465	q11.1-q26.3	897	
SJMPAL016449	B/M	SJMPAL016449_D1	16	84130	90274695	hemiLoss	1	Female	No	90,190,566	p13.3-q24.3	1047	CTCF(762);CBFA2T3(1011)
SJMPAL016449	B/M	SJMPAL016449_D1	17	2220	81057996	hemiLoss	1	Female	No	81,055,777	p13.3-q25.3	1470	TP53(217);GAS7(271);NCOR1(323);NF1(512);SUZ12(523)
SJMPAL016449	B/M	SJMPAL016449_D1	19	254506	59097752	hemiLoss	1	Female	No	58,843,247	p13.3-q13.43	1701	TCF3(64);SMARCA4(362)
SJMPAL016449	B/M	SJMPAL016449_D1	20	61651	62947458	hemiLoss	1	Female	No	62,885,808	p13-q13.33	732	SLX4IP(136);NCOA6(328)
SJMPAL016449	B/M	SJMPAL016449_D1	21	46206067	48100155	hemiLoss	1	Female	No	1,894,089	q22.3	37	
SJMPAL016449	B/M	SJMPAL016449_D1	22	16114244	51224208	hemiLoss	1	Female	No	35,109,965	q11.1-q13.33	590	VPREB1(123)
SJMPAL017973	Ph+	SJMPAL017973_D1	1	143418972	249218992	hemiGain	3	Male	No	105,800,021	q21.1-q44	1217	
SJMPAL017973	Ph+	SJMPAL017973_D1	5	158441932	158524855	homoLoss	0	Male	No	82,924	q33.3	1	EBF1(1)
SJMPAL017973	Ph+	SJMPAL017973_D1	5	157629443	158687153	hemiLoss	1	Male	No	1,057,711	q33.3	4	EBF1(2)
SJMPAL017973	Ph+	SJMPAL017973_D1	7	50411178	50462935	hemiLoss	1	Male	No	51,758	p12.2	1	IKZF1(1)
SJMPAL017973	Ph+	SJMPAL017973_D1	11	90950067	134944379	hemiLoss	1	Male	No	43,994,313	q14.3-q25	394	KMT2A(207)
SJMPAL017973	Ph+	SJMPAL017973_D1	22	22520548	22603024	hemiLoss	1	Male	No	82,477	q11.22	1	VPREB1(1)
SJMPAL017975	B/M	SJMPAL017975_D1	4	18058	190986338	hemiGain	3	Male	No	190,968,281	p16.3-q35.2	982	RAP1GDS1(563);LEF1(627);FBXW7(809)
SJMPAL017975	B/M	SJMPAL017975_D2	4	18058	190986338	hemiGain	3	Male	No	190,968,281	p16.3-q35.2	982	RAP1GDS1(563);LEF1(627);FBXW7(809)
SJMPAL017975	B/M	SJMPAL017975_D3	4	18058	190986338	hemiGain	3	Male	No	190,968,281	p16.3-q35.2	982	RAP1GDS1(563);LEF1(627);FBXW7(809)
SJMPAL017975	B/M	SJMPAL017975_D1	6	108666	170919470	hemiGain	3	Male	No	170,810,805	p25.3-q27	1343	FOXO3(947);MYB(1112);ARID1B(1235)
SJMPAL017975	B/M	SJMPAL017975_D2	6	108666	170919470	hemiGain	3	Male	No	170,810,805	p25.3-q27	1343	FOXO3(947);MYB(1112);ARID1B(1235)
SJMPAL017975	B/M	SJMPAL017975_D3	6	108666	170919470	hemiGain	3	Male	No	170,810,805	p25.3-q27	1343	FOXO3(947);MYB(1112);ARID1B(1235)
SJMPAL017975	B/M	SJMPAL017975_D1	13	19058717	115103529	hemiGain	3	Male	No	96,044,813	q11-q34	568	CDX2(87);FLT3(89);RB1(244)
SJMPAL017975	B/M	SJMPAL017975_D2	13	19058717	115103529	hemiGain	3	Male	No	96,044,813	q11-q34	568	CDX2(87);FLT3(89);RB1(244)
SJMPAL017975	B/M	SJMPAL017975_D3	13	19058717	115103529	hemiGain	3	Male	No	96,044,813	q11-q34	568	CDX2(87);FLT3(89);RB1(244)
SJMPAL017975	B/M	SJMPAL017975_D1	22	16114244	51224208	hemiGain	3	Male	No	35,109,965	q11.1-q13.33	590	VPREB1(123)
SJMPAL017975	B/M	SJMPAL017975_D2	22	16114244	51224208	hemiGain	3	Male	No	35,109,965	q11.1-q13.33	590	VPREB1(123)
SJMPAL017975	B/M	SJMPAL017975_D3	22	16114244	51224208	hemiGain	3	Male	No	35,109,965	q11.1-q13.33	590	VPREB1(123)
SJMPAL017975	B/M	SJMPAL017975_D1	Y	2655180	59019030	homoGain	2(gain)	Male	No	56,363,851	p11.31-q12	91	
SJMPAL017975	B/M	SJMPAL017975_D2	Y	2655180	59019030	homoGain	2(gain)	Male	No	56,363,851	p11.31-q12	91	
SJMPAL017975	B/M	SJMPAL017975_D3	Y	2655180	59019030	homoGain	2(gain)	Male	No	56,363,851	p11.31-q12	91	
SJMPAL017976	T/M	SJMPAL017976_D2	3	45367619	49639453	hemiLoss	1	Male	No	4,271,835	p21.31	107	SETD2(35)
SJMPAL017976	T/M	SJMPAL017976_D2	4	97274198	190986338	hemiGain	3	Male	No	93,712,141	q22.3-q35.2	422	RAP1GDS1(3);LEF1(67);FBXW7(249)
SJMPAL017976	T/M	SJMPAL017976_D2	4	94060395	94999237	hemiLoss	1	Male	No	938,843	q22.2	2	
SJMPAL017976	T/M	SJMPAL017976_D2	4	90674431	93447869	hemiGain	3	Male	No	2,773,439	q22.1	6	
SJMPAL017976	T/M	SJMPAL017976_D2	4	86615391	89129484	hemiGain	3	Male	No	2,514,094	q21.23-q22.1	23	
SJMPAL017976	T/M	SJMPAL017976_D2	6	156494378	157400693	hemiGain	3	Male	No	906,316	q25.3	2	ARID1B(1)
SJMPAL017976	T/M	SJMPAL017976_D2	14	97869991	99753792	hemiGain	3	Male	No	1,883,802	q32.2	5	BCL11B(5)
SJMPAL017976	T/M	SJMPAL017976_D2	15	89731776	91777776	hemiLoss	1	Male	No	2,046,001	q26.1	47	
SJMPAL017976	T/M	SJMPAL017976_D2	18	10501467	15400035	hemiLoss	1	Male	No	4,898,569	p11.22-p11.1	42	PTPN2(22)
SJMPAL017976	T/M	SJMPAL017976_D2	18	13697	8660149	hemiLoss	1	Male	No	8,646,453	p11.32-p11.22	54	
SJMPAL017976	T/M	SJMPAL017976_D2	X	6456891	8144219	hemiGain	3	Male	No	1,687,329	p22.31	7	
SJMPAL017978	T/M	SJMPAL017978_D2	7	49566720	51744457	hemiLoss	1	Female	No	2,177,738	p12.2-p12.1	9	IKZF1(4)
SJMPAL017978	T/M	SJMPAL017978_D3	7	49566720	51744457	hemiLoss	1	Female	No	2,177,738	p12.2-p12.1	9	IKZF1(4)
SJMPAL017978	T/M	SJMPAL017978_D2	11	81501218	81517261	homoLoss	0	Female	No	16,044	q14.1	0	
SJMPAL017978	T/M	SJMPAL017978_D3	11	81501218	81517261	homoLoss	0	Female	No	16,044	q14.1	0	
SJMPAL017978	T/M	SJMPAL017978_D2	16	29581764	30215621	hemiGain	3	Female	No	633,858	p11.2	32	
SJMPAL017978	T/M	SJMPAL017978_D3	16	29581764	30215621	hemiGain	3	Female	No	633,858	p11.2	32	
SJMPAL017979	KMT2Ar	SJMPAL017979_D1	11	118362414	134944379	hemiGain	3	Female	No	16,581,966	q23.3-q25	188	KMT2A(1)
SJMPAL017979	KMT2Ar	SJMPAL017979_D1	12	163819	32024312	hemiLoss	1	Female	No	31,860,494	p13.33-p11.21	348	ETV6(217);CDKN1B(227);AEBP2(275)
SJMPAL017979	KMT2Ar	SJMPAL017979_D1	17	2220	22237505	hemiLoss	1	Female	No	22,235,286	p13.3-p11.1	424	TP53(217);GAS7(271);NCOR1(323)
SJMPAL017981	KMT2Ar	SJMPAL017981_D2	11	118357103	118459269	hemiLoss	1	Female	Yes	102,167	q23.3	6	KMT2A(1)
SJMPAL017981	KMT2Ar	SJMPAL017981_D3	11	118357103	118459269	hemiLoss	1	Female	Yes	102,167	q23.3	6	KMT2A(1)
SJMPAL017981	KMT2Ar	SJMPAL017981_D4	11	118357103	118459269	hemiLoss	1	Female	Yes	102,167	q23.3	6	KMT2A(1)
SJMPAL019076	B/M	SJMPAL019076_D2	1	230320851	231282847	hemiLoss	1	Male	No	961,997	q42.13-q42.2	11	
SJMPAL019076	B/M	SJMPAL019076_D2	1	227410637	229715337	hemiLoss	1	Male	No	2,304,701	q42.13	40	
SJMPAL019076	B/M	SJMPAL019076_D2	1	209627342	214420058	hemiLoss	1	Male	No	4,792,717	q32.2-q32.3	44	
SJMPAL019076	B/M	SJMPAL019076_D2	4	166070974	177343885	hemiLoss	1	Male	No	11,272,912	q32.3-q34.2	46	
SJMPAL019076	B/M	SJMPAL019076_D2	4	141995467	152672882	hemiLoss	1	Male	No	10,677,416	q31.21-q31.3	49	
SJMPAL019076	B/M	SJMPAL019076_D2	4	74310844	88770890	hemiLoss	1	Male	No	14,460,047	q13.3-q22.1	115	
SJMPAL019076	B/M	SJMPAL019076_D2	7	135979376	138619660	hemiLoss	1	Male	No	2,640,285	q33-q34	14	
SJMPAL019076	B/M	SJMPAL019076_D2	8	60029168	60112601	homoLoss	0	Male	No	83,434	q12.1	1	
SJMPAL019076	B/M	SJMPAL019076_D2	9	28592212	28761770	homoLoss	0	Male	No	169,559	p21.1	1	
SJMPAL019076	B/M	SJMPAL019076_D2	9	21842630	22132076	homoLoss	0	Male	No	289,447	p21.3	5	CDKN2A(3);CDKN2B(5)
SJMPAL019076	B/M	SJMPAL019076_D2	9	46587	36861407	hemiLoss	1	Male	No	36,814,821	p24.3-p13.2	237	PSIP1(65);MLLT3(82);CDKN2A(111);CDKN2B(113);PAX5(237)
SJMPAL019076	B/M	SJMPAL019076_D2	16	88983374	90274695	hemiLoss	1	Male	No	1,291,322	q24.3	37	CBFA2T3(1)
SJMPAL019076	B/M	SJMPAL019076_D2	16	87559672	88669347	hemiLoss	1	Male	No	1,109,676	q24.2	13	
SJMPAL019076	B/M	SJMPAL019076_D2	16	46450037	87549542	hemiLoss	1	Male	No	41,099,506	q11.2-q24.2	410	CTCF(191)
SJMPAL019076	B/M	SJMPAL019076_D2	17	19142226	81057996	hemiGain	3	Male	No	61,915,771	p11.2-q25.3	1083	NF1(125);SUZ12(136)
SJMPAL019076	B/M	SJMPAL019076_D2	17	2220	18926545	hemiLoss	1	Male	No	18,924,326	p13.3-p11.2	385	TP53(217);GAS7(271);NCOR1(323)
SJMPAL019076	B/M	SJMPAL019076_D2	22	22454126	22522345	hemiLoss	1	Male	No	68,220	q11.22	0	VPREB1(Adjacent)
SJMPAL019076	B/M	SJMPAL019076_D2	22	16114244	51224208	hemiGain	3	Male	No	35,109,965	q11.1-q13.33	590	VPREB1(123)
SJMPAL040024	B/M	SJMPAL040024_D1	19	3251994	4197164	hemiLoss	1	Male	No	945,171	p13.3	32	
SJMPAL040025	B/M	SJMPAL040025_D1	1	189337997	189542716	hemiLoss	1	Female	No	204,720	q31.1	0	
SJMPAL040025	B/M	SJMPAL040025_D1	9	70609175	136023053	hemiLoss	1	Female	No	65,413,879	q21.11-q34.2	577	
SJMPAL040025	B/M	SJMPAL040025_D1	22	22388006	22522345	hemiLoss	1	Female	No	134,340	q11.22	0	VPREB1(Adjacent)
SJMPAL040026	KMT2Ar	SJMPAL040026_D1	X	36672197	36736963	homoLoss	0	Male	No	64,767	p21.1	0	
SJMPAL040027	T/M	SJMPAL040027_D2	4	173331787	173730395	hemiLoss	1	Male	Yes	398,609	q34.1	2	
SJMPAL040027	T/M	SJMPAL040027_D3	4	173331787	173730395	hemiLoss	1	Male	Yes	398,609	q34.1	2	
SJMPAL040027	T/M	SJMPAL040027_D4	4	173331787	173730395	hemiLoss	1	Male	Yes	398,609	q34.1	2	
SJMPAL040027	T/M	SJMPAL040027_D2	7	83400104	159138663	hemiLoss	1	Male	Yes	75,738,560	q21.11-q36.3	658	CUX1(199);EZH2(551);KMT2C(617)
SJMPAL040027	T/M	SJMPAL040027_D3	7	83400104	159138663	hemiLoss	1	Male	Yes	75,738,560	q21.11-q36.3	658	CUX1(199);EZH2(551);KMT2C(617)
SJMPAL040027	T/M	SJMPAL040027_D4	7	83400104	159138663	hemiLoss	1	Male	Yes	75,738,560	q21.11-q36.3	658	CUX1(199);EZH2(551);KMT2C(617)
SJMPAL040027	T/M	SJMPAL040027_D2	13	85651739	115169878	hemiGain	3	Male	Yes	29,518,140	q31.1-q34	182	
SJMPAL040027	T/M	SJMPAL040027_D3	13	85651739	115169878	hemiGain	3	Male	Yes	29,518,140	q31.1-q34	182	
SJMPAL040027	T/M	SJMPAL040027_D4	13	85651739	115169878	hemiGain	3	Male	Yes	29,518,140	q31.1-q34	182	
SJMPAL040027	T/M	SJMPAL040027_D2	19	27763440	59128983	homoLOH	2	Male	Yes	31,365,544	q11-q13.43	1015	
SJMPAL040027	T/M	SJMPAL040027_D3	19	27763440	59128983	homoLOH	2	Male	Yes	31,365,544	q11-q13.43	1015	
SJMPAL040027	T/M	SJMPAL040027_D4	19	27763440	59128983	homoLOH	2	Male	Yes	31,365,544	q11-q13.43	1015	
SJMPAL040028	B/M	SJMPAL040028_D1	12	11787989	12050470	hemiLoss	1	Female	No	262,482	p13.2	2	ETV6(1)
SJMPAL040028	B/M	SJMPAL040028_D1	22	22568610	22601267	hemiLoss	1	Female	No	32,658	q11.22	1	VPREB1(1)
SJMPAL040031	B/M	SJMPAL040031_D2	4	132018311	134070179	hemiLoss	1	Male	Yes	2,051,869	q28.3	3	
SJMPAL040031	B/M	SJMPAL040031_D3	4	132018311	134070179	hemiLoss	1	Male	Yes	2,051,869	q28.3	3	
SJMPAL040031	B/M	SJMPAL040031_D4	4	132018311	134070179	hemiLoss	1	Male	Yes	2,051,869	q28.3	3	
SJMPAL040031	B/M	SJMPAL040031_D5	4	132018311	134070179	hemiLoss	1	Male	Yes	2,051,869	q28.3	3	
SJMPAL040031	B/M	SJMPAL040031_D2	6	109233725	109335946	hemiLoss	1	Male	Yes	102,222	q21	3	
SJMPAL040031	B/M	SJMPAL040031_D3	6	109233725	109335946	hemiLoss	1	Male	Yes	102,222	q21	3	
SJMPAL040031	B/M	SJMPAL040031_D4	6	109233725	109335946	hemiLoss	1	Male	Yes	102,222	q21	3	
SJMPAL040031	B/M	SJMPAL040031_D5	6	109233725	109335946	hemiLoss	1	Male	Yes	102,222	q21	3	
SJMPAL040031	B/M	SJMPAL040031_D2	8	130499223	130656205	hemiGain	3	Male	Yes	156,983	q24.21	0	NME*
SJMPAL040031	B/M	SJMPAL040031_D3	8	130499223	130656205	hemiGain	3	Male	Yes	156,983	q24.21	0	NME*
SJMPAL040031	B/M	SJMPAL040031_D4	8	130499223	130656205	hemiGain	3	Male	Yes	156,983	q24.21	0	NME*
SJMPAL040031	B/M	SJMPAL040031_D5	8	130499223	130656205	hemiGain	3	Male	Yes	156,983	q24.21	0	NME*
SJMPAL040031	B/M	SJMPAL040031_D2	8	60032805	60360286	hemiLoss	1	Male	Yes	327,482	q12.1	0	
SJMPAL040031	B/M	SJMPAL040031_D3	8	60032805	60360286	hemiLoss	1	Male	Yes	327,482	q12.1	0	
SJMPAL040031	B/M	SJMPAL040031_D4	8	60032805	60360286	hemiLoss	1	Male	Yes	327,482	q12.1	0	
SJMPAL040031	B/M	SJMPAL040031_D5	8	60032805	60360286	hemiLoss	1	Male	Yes	327,482	q12.1	0	
SJMPAL040033	B/M	SJMPAL040033_D2	9	36419529	37315476	homoLOH	2	Male	No	895,948	p13.2	7	PAX5(3)
SJMPAL040033	B/M	SJMPAL040033_D4	9	36419529	37315476	homoLOH	2	Male	No	895,948	p13.2	7	PAX5(3)
SJMPAL040033	B/M	SJMPAL040033_D2	9	21304245	22392359	homoLoss	0	Male	No	1,088,115	p21.3	15	CDKN2A(13);CDKN2B(15)
SJMPAL040033	B/M	SJMPAL040033_D3	9	21304245	22392359	homoLoss	0	Male	No	1,088,115	p21.3	15	CDKN2A(13);CDKN2B(15)
SJMPAL040033	B/M	SJMPAL040033_D4	9	21304245	22392359	homoLoss	0	Male	No	1,088,115	p21.3	15	CDKN2A(13);CDKN2B(15)
SJMPAL040033	B/M	SJMPAL040033_D3	9	46587	37315476	homoLOH	2	Male	No	37,268,890	p24.3-p13.2	241	PSIP1(65);MLLT3(82);CDKN2A(111);CDKN2B(113);PAX5(237)
SJMPAL040033	B/M	SJMPAL040033_D2	9	46587	36419529	homoLOH	2	Male	No	36,372,943	p24.3-p13.2	234	PSIP1(65);MLLT3(82);CDKN2A(111);CDKN2B(113)
SJMPAL040033	B/M	SJMPAL040033_D4	9	46587	36419529	homoLOH	2	Male	No	36,372,943	p24.3-p13.2	234	PSIP1(65);MLLT3(82);CDKN2A(111);CDKN2B(113)
SJMPAL040033	B/M	SJMPAL040033_D2	12	12037178	12069821	hemiLoss	1	Male	No	32,644	p13.2	2	ETV6(1)
SJMPAL040033	B/M	SJMPAL040033_D3	12	12037178	12069821	hemiLoss	1	Male	No	32,644	p13.2	2	ETV6(1)
SJMPAL040033	B/M	SJMPAL040033_D4	12	12037178	12069821	hemiLoss	1	Male	No	32,644	p13.2	2	ETV6(1)
SJMPAL040033	B/M	SJMPAL040033_D2	X	44734610	44890627	homoLoss	0	Male	No	156,018	p11.3	1	KDM6A(1)
SJMPAL040033	B/M	SJMPAL040033_D3	X	44734610	44890627	homoLoss	0	Male	No	156,018	p11.3	1	KDM6A(1)
SJMPAL040033	B/M	SJMPAL040033_D4	X	44734610	44890627	homoLoss	0	Male	No	156,018	p11.3	1	KDM6A(1)
SJMPAL040034	B/M	SJMPAL040034_D2	12	6826159	6863205	hemiLoss	1	Male	No	37,047	p13.31	2	
SJMPAL040034	B/M	SJMPAL040034_D3	12	6826159	6863205	hemiLoss	1	Male	No	37,047	p13.31	2	
SJMPAL040034	B/M	SJMPAL040034_D2	12	163819	6779223	hemiGain	3	Male	No	6,615,405	p13.33-p13.31	83	
SJMPAL040034	B/M	SJMPAL040034_D3	12	163819	6779223	hemiGain	3	Male	No	6,615,405	p13.33-p13.31	83	
SJMPAL040034	B/M	SJMPAL040034_D2	19	254506	1620395	hemiLoss	1	Male	No	1,365,890	p13.3	64	TCF3(64)
SJMPAL040034	B/M	SJMPAL040034_D3	19	254506	1620395	hemiLoss	1	Male	No	1,365,890	p13.3	64	TCF3(64)
SJMPAL040034	B/M	SJMPAL040034_D2	22	18874965	19010149	hemiGain	3	Male	No	135,185	q11.21	5	
SJMPAL040034	B/M	SJMPAL040034_D3	22	18874965	19010149	hemiGain	3	Male	No	135,185	q11.21	5	
SJMPAL040034	B/M	SJMPAL040034_D2	X	2699676	154921994	homoGain	2(gain)	Male	No	152,222,319	p22.33-q28	1049	KDM6A(209);PHF6(802)
SJMPAL040034	B/M	SJMPAL040034_D3	X	2699676	154921994	homoGain	2(gain)	Male	No	152,222,319	p22.33-q28	1049	KDM6A(209);PHF6(802)
SJMPAL040035	KMT2Ar	SJMPAL040035_D2	8	2134326	2392919	hemiGain	3	Male	No	258,594	p23.3-p23.2	1	
SJMPAL040035	KMT2Ar	SJMPAL040035_D3	8	2134326	2392919	hemiGain	3	Male	No	258,594	p23.3-p23.2	1	
SJMPAL040036	T/M	SJMPAL040036_D2	8	130499223	130742744	hemiGain	3	Female	Yes	243,522	q24.21	0	NME*
SJMPAL040036	T/M	SJMPAL040036_D3	8	130499223	130742744	hemiGain	3	Female	Yes	243,522	q24.21	0	NME*
SJMPAL040036	T/M	SJMPAL040036_D4	8	130499223	130742744	hemiGain	3	Female	Yes	243,522	q24.21	0	NME*
SJMPAL040036	T/M	SJMPAL040036_D5	8	130499223	130742744	hemiGain	3	Female	Yes	243,522	q24.21	0	NME*
SJMPAL040036	T/M	SJMPAL040036_D2	9	21318644	23285981	homoLoss	0	Female	Yes	1,967,338	p21.3	16	CDKN2A(12);CDKN2B(14)
SJMPAL040036	T/M	SJMPAL040036_D3	9	21318644	23285981	homoLoss	0	Female	Yes	1,967,338	p21.3	16	CDKN2A(12);CDKN2B(14)
SJMPAL040036	T/M	SJMPAL040036_D4	9	21318644	23285981	homoLoss	0	Female	Yes	1,967,338	p21.3	16	CDKN2A(12);CDKN2B(14)
SJMPAL040036	T/M	SJMPAL040036_D5	9	21318644	23285981	homoLoss	0	Female	Yes	1,967,338	p21.3	16	CDKN2A(12);CDKN2B(14)
SJMPAL040036	T/M	SJMPAL040036_D2	9	17463615	18732114	homoLoss	0	Female	Yes	1,268,500	p22.2-p22.1	4	
SJMPAL040036	T/M	SJMPAL040036_D3	9	17463615	18732114	homoLoss	0	Female	Yes	1,268,500	p22.2-p22.1	4	
SJMPAL040036	T/M	SJMPAL040036_D4	9	17463615	18732114	homoLoss	0	Female	Yes	1,268,500	p22.2-p22.1	4	
SJMPAL040036	T/M	SJMPAL040036_D5	9	17463615	18732114	homoLoss	0	Female	Yes	1,268,500	p22.2-p22.1	4	
SJMPAL040036	T/M	SJMPAL040036_D2	9	46587	33189234	homoLOH	2	Female	Yes	33,142,648	p24.3-p21.1	148	PSIP1(65);MLLT3(82);CDKN2A(111);CDKN2B(113)
SJMPAL040036	T/M	SJMPAL040036_D3	9	46587	33189234	homoLOH	2	Female	Yes	33,142,648	p24.3-p21.1	148	PSIP1(65);MLLT3(82);CDKN2A(111);CDKN2B(113)
SJMPAL040036	T/M	SJMPAL040036_D4	9	46587	33189234	homoLOH	2	Female	Yes	33,142,648	p24.3-p21.1	148	PSIP1(65);MLLT3(82);CDKN2A(111);CDKN2B(113)
SJMPAL040036	T/M	SJMPAL040036_D5	9	46587	33189234	homoLOH	2	Female	Yes	33,142,648	p24.3-p21.1	148	PSIP1(65);MLLT3(82);CDKN2A(111);CDKN2B(113)
SJMPAL040036	T/M	SJMPAL040036_D2	11	194441	46766701	homoLOH	2	Female	Yes	46,572,261	p15.5-p11.2	509	WT1(416);LMO2(433);RAG1(454)
SJMPAL040036	T/M	SJMPAL040036_D3	11	194441	46766701	homoLOH	2	Female	Yes	46,572,261	p15.5-p11.2	509	WT1(416);LMO2(433);RAG1(454)
SJMPAL040036	T/M	SJMPAL040036_D4	11	194441	46766701	homoLOH	2	Female	Yes	46,572,261	p15.5-p11.2	509	WT1(416);LMO2(433);RAG1(454)
SJMPAL040036	T/M	SJMPAL040036_D5	11	194441	46766701	homoLOH	2	Female	Yes	46,572,261	p15.5-p11.2	509	WT1(416);LMO2(433);RAG1(454)
SJMPAL040037	T/M	SJMPAL040037_D2	9	11734178	12069626	homoLoss	0	Male	No	335,449	p23	0	
SJMPAL040037	T/M	SJMPAL040037_D3	9	11734178	12069626	homoLoss	0	Male	No	335,449	p23	0	
SJMPAL040037	T/M	SJMPAL040037_D4	9	11734178	12069626	homoLoss	0	Male	No	335,449	p23	0	
SJMPAL040037	T/M	SJMPAL040037_D5	9	11734178	12069626	homoLoss	0	Male	No	335,449	p23	0	
SJMPAL040037	T/M	SJMPAL040037_D2	9	46587	38003567	homoLOH	2	Male	No	37,956,981	p24.3-p13.2	252	PSIP1(65);MLLT3(82);CDKN2A(111);CDKN2B(113);PAX5(237)
SJMPAL040037	T/M	SJMPAL040037_D3	9	46587	38003567	homoLOH	2	Male	No	37,956,981	p24.3-p13.2	252	PSIP1(65);MLLT3(82);CDKN2A(111);CDKN2B(113);PAX5(237)
SJMPAL040037	T/M	SJMPAL040037_D4	9	46587	38003567	homoLOH	2	Male	No	37,956,981	p24.3-p13.2	252	PSIP1(65);MLLT3(82);CDKN2A(111);CDKN2B(113);PAX5(237)
SJMPAL040037	T/M	SJMPAL040037_D5	9	46587	38003567	homoLOH	2	Male	No	37,956,981	p24.3-p13.2	252	PSIP1(65);MLLT3(82);CDKN2A(111);CDKN2B(113);PAX5(237)
SJMPAL040038	B/M	SJMPAL040038_D2	5	127783859	127920431	hemiLoss	1	Female	Yes	136,573	q23.3	1	
SJMPAL040038	B/M	SJMPAL040038_D2	7	50350267	50367495	hemiLoss	1	Female	Yes	17,229	p12.2	1	IKZF1(1)
SJMPAL040038	B/M	SJMPAL040038_D2	9	65629772	136532183	hemiLoss	1	Female	Yes	70,902,412	q12-q34.2	621	
SJMPAL040038	B/M	SJMPAL040038_D2	9	21902343	22008026	homoLoss	0	Female	Yes	105,684	p21.3	4	CDKN2A(2);CDKN2B(4)
SJMPAL040038	B/M	SJMPAL040038_D2	9	46587	37302155	hemiLoss	1	Female	Yes	37,255,569	p24.3-p13.2	241	PSIP1(65);MLLT3(82);CDKN2A(111);CDKN2B(113);PAX5(237)
SJMPAL040038	B/M	SJMPAL040038_D2	20	31246662	63025520	hemiLoss	1	Female	Yes	31,778,859	q11.21-q13.33	441	NCOA6(37)
SJMPAL040038	B/M	SJMPAL040038_D2	22	22388006	22599216	hemiLoss	1	Female	Yes	211,211	q11.22	1	VPREB1(1)
SJMPAL040039	B/M	SJMPAL040039_D2	1	244214095	244317946	hemiLoss	1	Male	Yes	103,852	q44	1	
SJMPAL040039	B/M	SJMPAL040039_D3	1	244214095	244317946	hemiLoss	1	Male	Yes	103,852	q44	1	
SJMPAL040039	B/M	SJMPAL040039_D2	3	60066360	60560162	hemiLoss	1	Male	Yes	493,803	p14.2	1	FHIT(1)
SJMPAL040039	B/M	SJMPAL040039_D3	3	60066360	60560162	hemiLoss	1	Male	Yes	493,803	p14.2	1	FHIT(1)
SJMPAL040039	B/M	SJMPAL040039_D2	4	99065480	99298979	hemiLoss	1	Male	Yes	233,500	q23	1	RAP1GDS1(1)
SJMPAL040039	B/M	SJMPAL040039_D3	4	99065480	99298979	hemiLoss	1	Male	Yes	233,500	q23	1	RAP1GDS1(1)
SJMPAL040039	B/M	SJMPAL040039_D2	6	153620144	153707958	hemiLoss	1	Male	Yes	87,815	q25.2	0	
SJMPAL040039	B/M	SJMPAL040039_D3	6	153620144	153707958	hemiLoss	1	Male	Yes	87,815	q25.2	0	
SJMPAL040039	B/M	SJMPAL040039_D2	6	108645572	109420225	hemiLoss	1	Male	Yes	774,654	q21	7	FOXO3(2)
SJMPAL040039	B/M	SJMPAL040039_D3	6	108645572	109420225	hemiLoss	1	Male	Yes	774,654	q21	7	FOXO3(2)
SJMPAL040039	B/M	SJMPAL040039_D2	7	109620747	110310858	hemiLoss	1	Male	Yes	690,112	q31.1	1	
SJMPAL040039	B/M	SJMPAL040039_D3	7	109620747	110310858	hemiLoss	1	Male	Yes	690,112	q31.1	1	
SJMPAL040039	B/M	SJMPAL040039_D2	9	65629772	113398561	hemiLoss	1	Male	Yes	47,768,790	q12-q31.3	322	
SJMPAL040039	B/M	SJMPAL040039_D2	9	35400272	36994681	hemiLoss	1	Male	Yes	1,594,410	p13.3-p13.2	41	PAX5(39)
SJMPAL040039	B/M	SJMPAL040039_D2	9	21676256	22012422	homoLoss	0	Male	Yes	336,167	p21.3	5	CDKN2A(3);CDKN2B(5)
SJMPAL040039	B/M	SJMPAL040039_D3	9	21676256	22012422	homoLoss	0	Male	Yes	336,167	p21.3	5	CDKN2A(3);CDKN2B(5)
SJMPAL040039	B/M	SJMPAL040039_D2	9	21106901	23351071	hemiLoss	1	Male	Yes	2,244,171	p21.3	26	CDKN2A(22);CDKN2B(24)
SJMPAL040039	B/M	SJMPAL040039_D3	9	21106901	23351071	hemiLoss	1	Male	Yes	2,244,171	p21.3	26	CDKN2A(22);CDKN2B(24)
SJMPAL040039	B/M	SJMPAL040039_D2	10	1463208	1612405	hemiLoss	1	Male	Yes	149,198	p15.3	2	
SJMPAL040039	B/M	SJMPAL040039_D3	10	1463208	1612405	hemiLoss	1	Male	Yes	149,198	p15.3	2	
SJMPAL040039	B/M	SJMPAL040039_D2	16	58538743	58867855	hemiLoss	1	Male	Yes	329,113	q21	7	
SJMPAL040039	B/M	SJMPAL040039_D3	16	58538743	58867855	hemiLoss	1	Male	Yes	329,113	q21	7	
SJMPAL040039	B/M	SJMPAL040039_D2	16	50038302	50479966	hemiLoss	1	Male	Yes	441,665	q12.1	6	
SJMPAL040039	B/M	SJMPAL040039_D3	16	50038302	50479966	hemiLoss	1	Male	Yes	441,665	q12.1	6	
SJMPAL040039	B/M	SJMPAL040039_D2	17	29377026	29483108	homoLoss	0	Male	Yes	106,083	q11.2	2	NF1(2)
SJMPAL040039	B/M	SJMPAL040039_D3	17	29377026	29483108	homoLoss	0	Male	Yes	106,083	q11.2	2	NF1(2)
SJMPAL040039	B/M	SJMPAL040039_D2	17	28753480	29361077	hemiLoss	1	Male	Yes	607,598	q11.2	12	
SJMPAL040039	B/M	SJMPAL040039_D3	17	28753480	29361077	hemiLoss	1	Male	Yes	607,598	q11.2	12	
SJMPAL040039	B/M	SJMPAL040039_D2	20	52206863	52284831	homoLoss	0	Male	Yes	77,969	q13.2	0	
SJMPAL040039	B/M	SJMPAL040039_D3	20	52206863	52284831	homoLoss	0	Male	Yes	77,969	q13.2	0	
SJMPAL040039	B/M	SJMPAL040039_D2	20	31262920	63025520	hemiLoss	1	Male	Yes	31,762,601	q11.21-q13.33	441	NCOA6(37)
SJMPAL040039	B/M	SJMPAL040039_D3	20	31262920	63025520	hemiLoss	1	Male	Yes	31,762,601	q11.21-q13.33	441	NCOA6(37)
SJMPAL040039	B/M	SJMPAL040039_D2	22	22522587	22599764	hemiLoss	1	Male	Yes	77,178	q11.22	1	VPREB1(1)
SJMPAL040039	B/M	SJMPAL040039_D3	22	22522587	22599764	hemiLoss	1	Male	Yes	77,178	q11.22	1	VPREB1(1)
SJMPAL040039	B/M	SJMPAL040039_D2	22	22388006	22522345	homoLoss	0	Male	Yes	134,340	q11.22	0	
SJMPAL040039	B/M	SJMPAL040039_D3	22	22388006	22522345	homoLoss	0	Male	Yes	134,340	q11.22	0	
SJMPAL040459	T/M	SJMPAL040459_D2	11	194441	36873565	homoLOH	2	Female	No	36,679,125	p15.5-p12	456	WT1(416);LMO2(433);RAG1(454)
SJMPAL040459	T/M	SJMPAL040459_D3	11	194441	36873565	homoLOH	2	Female	No	36,679,125	p15.5-p12	456	WT1(416);LMO2(433);RAG1(454)
SJMPAL040459	T/M	SJMPAL040459_D4	11	194441	36873565	homoLOH	2	Female	No	36,679,125	p15.5-p12	456	WT1(416);LMO2(433);RAG1(454)
SJMPAL041117	B/M	SJMPAL041117_D2	1	149022110	233439271	hemiGain	3	Male	Yes	84,417,162	q21.2-q42.2	1010	
SJMPAL041117	B/M	SJMPAL041117_D3	1	149022110	233439271	hemiGain	3	Male	Yes	84,417,162	q21.2-q42.2	1010	
SJMPAL041117	B/M	SJMPAL041117_D2	4	18058	191154276	hemiGain	3	Male	Yes	191,136,219	p16.3-q35.2	982	RAP1GDS1(563);LEF1(627);FBXW7(809)
SJMPAL041117	B/M	SJMPAL041117_D3	4	18058	191154276	hemiGain	3	Male	Yes	191,136,219	p16.3-q35.2	982	RAP1GDS1(563);LEF1(627);FBXW7(809)
SJMPAL041117	B/M	SJMPAL041117_D2	6	108666	171115067	hemiGain	3	Male	Yes	171,006,402	p25.3-q27	1343	FOXO3(947);MYB(1112);ARID1B(1235)
SJMPAL041117	B/M	SJMPAL041117_D3	6	108666	171115067	hemiGain	3	Male	Yes	171,006,402	p25.3-q27	1343	FOXO3(947);MYB(1112);ARID1B(1235)
SJMPAL041117	B/M	SJMPAL041117_D2	9	90149036	90256520	hemiLoss	1	Male	Yes	107,485	q21.33	1	
SJMPAL041117	B/M	SJMPAL041117_D3	9	90149036	90256520	hemiLoss	1	Male	Yes	107,485	q21.33	1	
SJMPAL041117	B/M	SJMPAL041117_D2	10	94316	135534747	hemiGain	3	Male	Yes	135,440,432	p15.3-q26.3	1028	WAC(200)
SJMPAL041117	B/M	SJMPAL041117_D3	10	94316	135534747	hemiGain	3	Male	Yes	135,440,432	p15.3-q26.3	1028	WAC(200)
SJMPAL041117	B/M	SJMPAL041117_D2	13	20407151	20562175	hemiLoss	1	Male	Yes	155,025	q12.11	2	
SJMPAL041117	B/M	SJMPAL041117_D3	13	20407151	20562175	hemiLoss	1	Male	Yes	155,025	q12.11	2	
SJMPAL041117	B/M	SJMPAL041117_D2	14	19010693	107349540	hemiGain	3	Male	Yes	88,338,848	q11.1-q32.33	863	BCL11B(664)
SJMPAL041117	B/M	SJMPAL041117_D3	14	19010693	107349540	hemiGain	3	Male	Yes	88,338,848	q11.1-q32.33	863	BCL11B(664)
SJMPAL041117	B/M	SJMPAL041117_D2	18	13697	78077248	hemiGain	3	Male	Yes	78,063,552	p11.32-q23	390	PTPN2(90)
SJMPAL041117	B/M	SJMPAL041117_D3	18	13697	78077248	hemiGain	3	Male	Yes	78,063,552	p11.32-q23	390	PTPN2(90)
SJMPAL041117	B/M	SJMPAL041117_D2	19	254506	4967780	hemiLoss	1	Male	Yes	4,713,275	p13.3	177	TCF3(64)
SJMPAL041117	B/M	SJMPAL041117_D3	19	254506	4967780	hemiLoss	1	Male	Yes	4,713,275	p13.3	177	TCF3(64)
SJMPAL041117	B/M	SJMPAL041117_D2	21	10713423	48129895	homoGain	4	Male	Yes	37,416,473	p11.2-q22.3	329	RUNX1(164)
SJMPAL041117	B/M	SJMPAL041117_D3	21	10713423	48129895	homoGain	4	Male	Yes	37,416,473	p11.2-q22.3	329	RUNX1(164)
SJMPAL041118	B/M	SJMPAL041118_D2	12	163819	6772875	hemiGain	3	Male	No	6,609,057	p13.33-p13.31	82	
SJMPAL041118	B/M	SJMPAL041118_D3	12	163819	6772875	hemiGain	3	Male	No	6,609,057	p13.33-p13.31	82	
SJMPAL041118	B/M	SJMPAL041118_D4	12	163819	6772875	hemiGain	3	Male	No	6,609,057	p13.33-p13.31	82	
SJMPAL041118	B/M	SJMPAL041118_D2	13	49858511	52209422	hemiLoss	1	Male	No	2,350,912	q14.2-q14.3	32	
SJMPAL041118	B/M	SJMPAL041118_D3	13	49858511	52209422	hemiLoss	1	Male	No	2,350,912	q14.2-q14.3	32	
SJMPAL041118	B/M	SJMPAL041118_D2	19	254506	1613847	hemiLoss	1	Male	No	1,359,342	p13.3	64	TCF3(64)
SJMPAL041118	B/M	SJMPAL041118_D3	19	254506	1613847	hemiLoss	1	Male	No	1,359,342	p13.3	64	TCF3(64)
SJMPAL041118	B/M	SJMPAL041118_D4	19	254506	1613847	hemiLoss	1	Male	No	1,359,342	p13.3	64	TCF3(64)
SJMPAL041119	B/M	SJMPAL041119_D2	7	41421	159138663	hemiLoss	1	Male	Yes	159,097,243	p22.3-q36.3	1231	IKZF1(381);CUX1(772);EZH2(1124);KMT2C(1190)
SJMPAL041119	B/M	SJMPAL041119_D3	7	41421	159138663	hemiLoss	1	Male	Yes	159,097,243	p22.3-q36.3	1231	IKZF1(381);CUX1(772);EZH2(1124);KMT2C(1190)
SJMPAL041119	B/M	SJMPAL041119_D4	7	41421	159138663	hemiLoss	1	Male	Yes	159,097,243	p22.3-q36.3	1231	IKZF1(381);CUX1(772);EZH2(1124);KMT2C(1190)
SJMPAL041119	B/M	SJMPAL041119_D2	8	46246	146364022	hemiGain	3	Male	Yes	146,317,777	p23.3-q24.3	941	PCM1(149);FGFR1(314);MYC(771)
SJMPAL041119	B/M	SJMPAL041119_D3	8	46246	146364022	hemiGain	3	Male	Yes	146,317,777	p23.3-q24.3	941	PCM1(149);FGFR1(314);MYC(771)
SJMPAL041119	B/M	SJMPAL041119_D4	8	46246	146364022	hemiGain	3	Male	Yes	146,317,777	p23.3-q24.3	941	PCM1(149);FGFR1(314);MYC(771)
SJMPAL041119	B/M	SJMPAL041119_D2	13	19058717	115169878	hemiGain	3	Male	Yes	96,111,162	q11-q34	568	CDX2(87);FLT3(89);RB1(244)
SJMPAL041119	B/M	SJMPAL041119_D3	13	19058717	115169878	hemiGain	3	Male	Yes	96,111,162	q11-q34	568	CDX2(87);FLT3(89);RB1(244)
SJMPAL041119	B/M	SJMPAL041119_D4	13	19058717	115169878	hemiGain	3	Male	Yes	96,111,162	q11-q34	568	CDX2(87);FLT3(89);RB1(244)
SJMPAL041119	B/M	SJMPAL041119_D2	21	10707352	48129895	hemiGain	3	Male	Yes	37,422,544	p11.2-q22.3	329	RUNX1(164)
SJMPAL041119	B/M	SJMPAL041119_D3	21	10707352	48129895	hemiGain	3	Male	Yes	37,422,544	p11.2-q22.3	329	RUNX1(164)
SJMPAL041119	B/M	SJMPAL041119_D4	21	10707352	48129895	hemiGain	3	Male	Yes	37,422,544	p11.2-q22.3	329	RUNX1(164)
SJMPAL041120	B/M	SJMPAL041120_D1	9	131461614	134025595	hemiLoss	1	Female	Yes	2,563,982	q34.11-q34.13	48	
SJMPAL041121	T/M	SJMPAL041121_D2	3	163467756	163895047	hemiLoss	1	Male	No	427,292	q26.1	1	
SJMPAL041121	T/M	SJMPAL041121_D3	3	163467756	163895047	hemiLoss	1	Male	No	427,292	q26.1	1	
SJMPAL041121	T/M	SJMPAL041121_D2	4	153272228	153742497	hemiLoss	1	Male	No	470,270	q31.3	7	FBXW7(1)
SJMPAL041121	T/M	SJMPAL041121_D3	4	153272228	153742497	hemiLoss	1	Male	No	470,270	q31.3	7	FBXW7(1)
SJMPAL041121	T/M	SJMPAL041121_D2	9	21936381	23255092	homoLoss	0	Male	No	1,318,712	p21.3	6	CDKN2A(2);CDKN2B(4)
SJMPAL041121	T/M	SJMPAL041121_D3	9	21936381	23255092	homoLoss	0	Male	No	1,318,712	p21.3	6	CDKN2A(2);CDKN2B(4)
SJMPAL041121	T/M	SJMPAL041121_D2	9	21884052	23972006	hemiLoss	1	Male	No	2,087,955	p21.3	8	CDKN2A(2);CDKN2B(4)
SJMPAL041121	T/M	SJMPAL041121_D3	9	21884052	23972006	hemiLoss	1	Male	No	2,087,955	p21.3	8	CDKN2A(2);CDKN2B(4)
SJMPAL041121	T/M	SJMPAL041121_D2	10	1880681	2395188	hemiLoss	1	Male	No	514,508	p15.3	3	
SJMPAL041121	T/M	SJMPAL041121_D3	10	1880681	2395188	hemiLoss	1	Male	No	514,508	p15.3	3	
SJMPAL041121	T/M	SJMPAL041121_D2	12	33901640	34668421	hemiLoss	1	Male	No	766,782	p11.1	1	
SJMPAL041121	T/M	SJMPAL041121_D3	12	33901640	34668421	hemiLoss	1	Male	No	766,782	p11.1	1	
SJMPAL041121	T/M	SJMPAL041121_D2	12	12027745	12912804	hemiLoss	1	Male	No	885,060	p13.2-p13.1	12	ETV6(1);CDKN1B(11)
SJMPAL041121	T/M	SJMPAL041121_D3	12	12027745	12912804	hemiLoss	1	Male	No	885,060	p13.2-p13.1	12	ETV6(1);CDKN1B(11)
SJMPAL041121	T/M	SJMPAL041121_D2	X	131503750	133532488	homoLoss	0	Male	No	2,028,739	q26.2	16	PHF6(16)
SJMPAL041121	T/M	SJMPAL041121_D3	X	131503750	133532488	homoLoss	0	Male	No	2,028,739	q26.2	16	PHF6(16)
SJMPAL041122	KMT2Ar	SJMPAL041122_D2	8	46246	146301427	hemiGain	3	Female	No	146,255,182	p23.3-q24.3	941	PCM1(149);FGFR1(314);MYC(771)
SJMPAL041122	KMT2Ar	SJMPAL041122_D3	8	46246	146301427	hemiGain	3	Female	No	146,255,182	p23.3-q24.3	941	PCM1(149);FGFR1(314);MYC(771)
SJMPAL041122	KMT2Ar	SJMPAL041122_D4	8	46246	146301427	hemiGain	3	Female	No	146,255,182	p23.3-q24.3	941	PCM1(149);FGFR1(314);MYC(771)
SJMPAL041122	KMT2Ar	SJMPAL041122_D3	X	61719290	154921994	hemiGain	3	Female	No	93,202,705	q11.1-q28	646	PHF6(399)
SJMPAL041122	KMT2Ar	SJMPAL041122_D4	X	61719290	154921994	hemiGain	3	Female	No	93,202,705	q11.1-q28	646	PHF6(399)
SJMPAL041122	KMT2Ar	SJMPAL041122_D2	X	2699676	154921994	hemiGain	3	Female	No	152,222,319	p22.33-q28	1049	KDM6A(209);PHF6(802)
SJMPAL041122	KMT2Ar	SJMPAL041122_D3	X	2699676	58438010	hemiGain	3	Female	No	55,738,335	p22.33-p11.1	403	KDM6A(209)
SJMPAL041122	KMT2Ar	SJMPAL041122_D4	X	2699676	58409750	hemiGain	3	Female	No	55,710,075	p22.33-p11.1	403	KDM6A(209)
SJMPAL042787	NOS (T/B)	SJMPAL042787_D2	1	172128536	198976520	hemiLoss	1	Female	No	26,847,985	q24.3-q32.1	169	
SJMPAL042787	NOS (T/B)	SJMPAL042787_D3	1	172128536	198976520	hemiLoss	1	Female	No	26,847,985	q24.3-q32.1	169	
SJMPAL042787	NOS (T/B)	SJMPAL042787_D2	1	82154	21455915	hemiLoss	1	Female	No	21,373,762	NA-p36.12	349	
SJMPAL042787	NOS (T/B)	SJMPAL042787_D3	1	82154	21455915	hemiLoss	1	Female	No	21,373,762	NA-p36.12	349	
SJMPAL042787	NOS (T/B)	SJMPAL042787_D2	9	127958854	141101939	hemiGain	3	Female	No	13,143,086	q33.3-q34.3	296	
SJMPAL042787	NOS (T/B)	SJMPAL042787_D3	9	127958854	141101939	hemiGain	3	Female	No	13,143,086	q33.3-q34.3	296	
SJMPAL042787	NOS (T/B)	SJMPAL042787_D2	19	254506	24562565	homoLOH	2	Female	No	24,308,060	p13.3-p11	686	TCF3(64);SMARCA4(362)
SJMPAL042787	NOS (T/B)	SJMPAL042787_D3	19	254506	24562565	homoLOH	2	Female	No	24,308,060	p13.3-p11	686	TCF3(64);SMARCA4(362)
SJMPAL042795	KMT2Ar	SJMPAL042795_D2	2	201582193	203074911	hemiLoss	1	Male	No	1,492,719	q33.1	25	CASP8(14)
SJMPAL042795	KMT2Ar	SJMPAL042795_D3	2	201582193	203074911	hemiLoss	1	Male	No	1,492,719	q33.1	25	CASP8(14)
SJMPAL042795	KMT2Ar	SJMPAL042795_D4	2	201582193	203074911	hemiLoss	1	Male	No	1,492,719	q33.1	25	CASP8(14)
SJMPAL042796	T/M	SJMPAL042796_D1	1	187311620	249218992	hemiGain	3	Male	No	61,907,373	q31.1-q44	533	
SJMPAL042796	T/M	SJMPAL042796_D1	5	106861975	180700260	hemiLoss	1	Male	No	73,838,286	q21.3-q35.3	664	EBF1(457);TLX3(518)
SJMPAL042797	T/M	SJMPAL042797_D1	1	197187605	249218992	hemiGain	3	Female	No	52,031,388	q31.3-q44	504	
SJMPAL042797	T/M	SJMPAL042797_D1	1	11351746	70993695	hemiGain	3	Female	No	59,641,950	p36.22-p31.1	794	ARID1A(270)
SJMPAL042797	T/M	SJMPAL042797_D1	1	82154	6846763	hemiLoss	1	Female	No	6,764,610	NA-p36.31	135	
SJMPAL042797	T/M	SJMPAL042797_D1	4	140841123	148402369	hemiLoss	1	Female	No	7,561,247	q31.1-q31.22	43	
SJMPAL042797	T/M	SJMPAL042797_D1	4	133393459	139629908	hemiLoss	1	Female	No	6,236,450	q28.3-q31.1	10	
SJMPAL042797	T/M	SJMPAL042797_D1	4	133073960	133312981	hemiLoss	1	Female	No	239,022	q28.3	0	
SJMPAL042797	T/M	SJMPAL042797_D1	4	132896066	132990510	hemiLoss	1	Female	No	94,445	q28.3	0	
SJMPAL042797	T/M	SJMPAL042797_D1	7	152529878	153496337	hemiGain	3	Female	No	966,460	q36.1-q36.2	2	
SJMPAL042797	T/M	SJMPAL042797_D1	7	50186632	51203557	hemiLoss	1	Female	No	1,016,926	p12.2-p12.1	7	IKZF1(2)
SJMPAL042797	T/M	SJMPAL042797_D1	8	3686944	5950845	hemiGain	3	Female	No	2,263,902	p23.2	1	
SJMPAL042797	T/M	SJMPAL042797_D1	11	85504913	114727155	hemiLoss	1	Female	No	29,222,243	q14.1-q23.3	203	PICALM(3);EED(4)
SJMPAL042797	T/M	SJMPAL042797_D1	12	7769776	8190206	hemiGain	3	Female	No	420,431	p13.31	9	
SJMPAL042797	T/M	SJMPAL042797_D1	16	57781764	90274695	hemiLoss	1	Female	No	32,492,932	q21-q24.3	363	CTCF(78);CBFA2T3(327)
SJMPAL042797	T/M	SJMPAL042797_D1	19	20601335	20715233	hemiLoss	1	Female	No	113,899	p12	1	
SJMPAL042798	NOS (T/B/M)	SJMPAL042798_D1	7	41421	159126310	hemiLoss	1	Male	No	159,084,890	p22.3-q36.3	1231	IKZF1(381);CUX1(772);EZH2(1124);KMT2C(1190)
SJMPAL042798	NOS (T/B/M)	SJMPAL042798_D1	11	122054704	122837643	hemiGain	3	Male	No	782,940	q24.1	4	
SJMPAL042798	NOS (T/B/M)	SJMPAL042798_D1	18	647513	939338	hemiGain	3	Male	No	291,826	p11.32	6	
SJMPAL042798	NOS (T/B/M)	SJMPAL042798_D1	22	25696686	25923169	hemiGain	3	Male	No	226,484	q11.23-q12.1	4	
SJMPAL042799	NOS (T/B/M)	SJMPAL042799_D1	6	63699843	64781793	hemiLoss	1	Male	No	1,081,951	q12	4	
SJMPAL042799	NOS (T/B/M)	SJMPAL042799_D1	7	64137087	159126310	homoLOH	2	Male	No	94,989,224	q11.21-q36.3	798	CUX1(339);EZH2(691);KMT2C(757)
SJMPAL042799	NOS (T/B/M)	SJMPAL042799_D1	9	21238962	22072638	homoLoss	0	Male	No	833,677	p21.3	17	CDKN2A(15);CDKN2B(17)
SJMPAL042799	NOS (T/B/M)	SJMPAL042799_D1	9	19610405	22599344	hemiLoss	1	Male	No	2,988,940	p22.1-p21.3	34	MLLT3(2);CDKN2A(31);CDKN2B(33)
SJMPAL042800	T/M	SJMPAL042800_D1	9	99040501	104167718	hemiLoss	1	Female	No	5,127,218	q22.32-q31.1	57	
SJMPAL042800	T/M	SJMPAL042800_D1	9	35966015	38774065	hemiLoss	1	Female	No	2,808,051	p13.3-p13.1	29	PAX5(9)
SJMPAL042800	T/M	SJMPAL042800_D1	9	19847234	32487521	hemiLoss	1	Female	No	12,640,288	p22.1-p21.1	57	MLLT3(1);CDKN2A(30);CDKN2B(32)
SJMPAL042800	T/M	SJMPAL042800_D1	13	28384030	28750937	hemiLoss	1	Female	No	366,908	q12.2	8	CDX2(4);FLT3(6)
SJMPAL042800	T/M	SJMPAL042800_D1	17	15044804	15058236	homoLoss	0	Female	No	13,433	p12	0	
SJMPAL042800	T/M	SJMPAL042800_D1	X	134406305	134684052	hemiGain	3	Female	No	277,748	q26.3	6	
SJMPAL042800	T/M	SJMPAL042800_D1	X	6173561	6555116	hemiGain	3	Female	No	381,556	p22.31	2	
SJMPAL042801	T/M	SJMPAL042801_D1	19	30963604	59097752	homoLOH	2	Male	No	28,134,149	q12-q13.43	1001	
SJMPAL042801	T/M	SJMPAL042801_D1	19	1293823	1615796	hemiLoss	1	Male	No	321,974	p13.3	16	TCF3(16)
SJMPAL042942	T/M	SJMPAL042942_D1	7	90031196	159126310	hemiLoss	1	Male	No	69,095,115	q21.13-q36.3	630	CUX1(171);EZH2(523);KMT2C(589)
SJMPAL042942	T/M	SJMPAL042942_D1	19	49705249	56741986	homoLOH	2	Male	No	7,036,738	q13.33-q13.43	361	
SJMPAL042942	T/M	SJMPAL042942_D1	19	13620059	17126266	homoLOH	2	Male	No	3,506,208	p13.2-p13.11	96	
SJMPAL042942	T/M	SJMPAL042942_D1	19	556692	7292583	homoLOH	2	Male	No	6,735,892	p13.3-p13.2	225	TCF3(54)
SJMPAL042942	T/M	SJMPAL042942_D1	21	36881395	48100155	hemiGain	3	Male	No	11,218,761	q22.12-q22.3	164	
SJMPAL042943	KMT2Ar	SJMPAL042943_D1	3	47586514	53278653	homoLOH	2	Female	No	5,692,140	p21.31-p21.1	175	
SJMPAL042946	NOS (T/B)	SJMPAL042946_D5	5	165575765	165833633	homoLoss	0	Female	No	257,869	q34	0	
SJMPAL042946	NOS (T/B)	SJMPAL042946_D1	5	165473591	166166252	homoLoss	0	Female	No	692,662	q34	0	
SJMPAL042946	NOS (T/B)	SJMPAL042946_D5	17	2220	10055680	hemiLoss	1	Female	No	10,053,461	p13.3-p13.1	271	TP53(217);GAS7(271)
SJMPAL042946	NOS (T/B)	SJMPAL042946_D1	19	254506	59097752	hemiGain	3	Female	No	58,843,247	p13.3-q13.43	1701	TCF3(64);SMARCA4(362)
SJMPAL042946	NOS (T/B)	SJMPAL042946_D5	19	254506	59097752	hemiGain	3	Female	No	58,843,247	p13.3-q13.43	1701	TCF3(64);SMARCA4(362)
SJMPAL043505	T/M	SJMPAL043505_D1	8	46246	39187256	hemiLoss	1	Male	No	39,141,011	p23.3-p11.22	323	PCM1(149);FGFR1(314)
SJMPAL043505	T/M	SJMPAL043505_D1	13	39858044	115103529	hemiLoss	1	Male	No	75,245,486	q13.3-q34	408	RB1(84)
SJMPAL043506	B/M	SJMPAL043506_D1	1	205627030	206779884	hemiGain	3	Male	No	1,152,855	q32.1	18	
SJMPAL043506	B/M	SJMPAL043506_D1	1	143418972	205570372	homoGain	4	Male	No	62,151,401	q21.1-q32.1	825	
SJMPAL043506	B/M	SJMPAL043506_D1	6	109771955	112896820	hemiLoss	1	Male	No	3,124,866	q21	27	
SJMPAL043506	B/M	SJMPAL043506_D1	6	85368775	109617657	homoLoss	0	Male	No	24,248,883	q14.3-q21	104	FOXO3(97)
SJMPAL043506	B/M	SJMPAL043506_D1	6	79864569	85354880	hemiLoss	1	Male	No	5,490,312	q14.1-q14.3	24	
SJMPAL043506	B/M	SJMPAL043506_D1	16	48898108	51540536	hemiGain	3	Male	No	2,642,429	q12.1	17	
SJMPAL043507	T/M	SJMPAL043507_D1	8	46246	146301427	hemiGain	3	Male	No	146,255,182	p23.3-q24.3	941	PCM1(149);FGFR1(314);MYC(771)
SJMPAL043508	B/M	SJMPAL043508_D1	1	143418972	249218992	hemiGain	3	Female	No	105,800,021	q21.1-q44	1217	
SJMPAL043508	B/M	SJMPAL043508_R1	7	50350267	50439198	hemiLoss	1	Female	No	88,932	p12.2	1	IKZF1(1)
SJMPAL043508	B/M	SJMPAL043508_R2	7	50350267	50439198	hemiLoss	1	Female	No	88,932	p12.2	1	IKZF1(1)
SJMPAL043508	B/M	SJMPAL043508_D1	8	46246	146301427	hemiGain	3	Female	No	146,255,182	p23.3-q24.3	941	PCM1(149);FGFR1(314);MYC(771)
SJMPAL043508	B/M	SJMPAL043508_R2	9	21979204	21990457	homoLoss	0	Female	No	11,254	p21.3	1	CDKN2A(1)
SJMPAL043508	B/M	SJMPAL043508_R2	9	21906310	22008026	hemiLoss	1	Female	No	101,717	p21.3	4	CDKN2A(2);CDKN2B(4)
SJMPAL043508	B/M	SJMPAL043508_R2	9	46587	33661821	homoLOH	2	Female	No	33,615,235	p24.3-p13.3	159	PSIP1(65);MLLT3(82);CDKN2A(111);CDKN2B(113)
SJMPAL043508	B/M	SJMPAL043508_D1	12	11949207	12178926	hemiLoss	1	Female	No	229,720	p13.2	2	ETV6(1)
SJMPAL043508	B/M	SJMPAL043508_R1	12	11949207	12178926	hemiLoss	1	Female	No	229,720	p13.2	2	ETV6(1)
SJMPAL043508	B/M	SJMPAL043508_R2	12	11949207	12178926	hemiLoss	1	Female	No	229,720	p13.2	2	ETV6(1)
SJMPAL043508	B/M	SJMPAL043508_D1	14	105222037	106072316	hemiLoss	1	Female	No	850,280	q32.33	24	
SJMPAL043508	B/M	SJMPAL043508_R1	14	105222037	106072316	hemiLoss	1	Female	No	850,280	q32.33	24	
SJMPAL043508	B/M	SJMPAL043508_R2	14	105222037	106072316	hemiLoss	1	Female	No	850,280	q32.33	24	
SJMPAL043508	B/M	SJMPAL043508_D1	16	34194635	90274695	hemiLoss	1	Female	No	56,080,061	p11.2-q24.3	481	CTCF(196);CBFA2T3(445)
SJMPAL043508	B/M	SJMPAL043508_R2	16	3259673	4626219	hemiLoss	1	Female	No	1,366,547	p13.3	37	
SJMPAL043508	B/M	SJMPAL043508_D1	22	22568610	22599764	hemiLoss	1	Female	No	31,155	q11.22	1	VPREB1(1)
SJMPAL043508	B/M	SJMPAL043508_R1	22	22568610	22599764	hemiLoss	1	Female	No	31,155	q11.22	1	VPREB1(1)
SJMPAL043508	B/M	SJMPAL043508_R2	22	22568610	22599764	hemiLoss	1	Female	No	31,155	q11.22	1	VPREB1(1)
SJMPAL043508	B/M	SJMPAL043508_R1	22	22453513	22522345	homoLoss	0	Female	No	68,833	q11.22	0	
SJMPAL043508	B/M	SJMPAL043508_R2	22	22453513	22522345	homoLoss	0	Female	No	68,833	q11.22	0	
SJMPAL043508	B/M	SJMPAL043508_D1	22	22388006	22522345	hemiLoss	1	Female	No	134,340	q11.22	0	
SJMPAL043508	B/M	SJMPAL043508_R1	22	22388006	22453513	hemiLoss	1	Female	No	65,508	q11.22	0	
SJMPAL043508	B/M	SJMPAL043508_R2	22	22388006	22453513	hemiLoss	1	Female	No	65,508	q11.22	0	
SJMPAL043508	B/M	SJMPAL043508_D1	X	2699676	154921994	hemiLoss	1	Female	No	152,222,319	p22.33-q28	1049	KDM6A(209);PHF6(802)
SJMPAL043509	T/M	SJMPAL043509_D1	1	82154	9664699	hemiLoss	1	Male	No	9,582,546	NA-p36.22	158	
SJMPAL043509	T/M	SJMPAL043509_D1	11	194441	41035085	homoLOH	2	Male	No	40,840,645	p15.5-p12	459	WT1(416);LMO2(433);RAG1(454)
SJMPAL043509	T/M	SJMPAL043509_D1	13	28524904	28807762	hemiLoss	1	Male	No	282,859	q12.2	5	CDX2(1);FLT3(3)
SJMPAL043509	T/M	SJMPAL043509_D1	13	28102482	28357303	hemiLoss	1	Male	No	254,822	q12.2	2	
SJMPAL043510	T/M	SJMPAL043510_D1	1	198880267	249208153	hemiGain	3	Female	No	50,327,887	q32.1-q44	495	
SJMPAL043510	T/M	SJMPAL043510_D1	1	195302846	198876858	homoGain	4	Female	No	3,574,013	q31.3-q32.1	21	
SJMPAL043510	T/M	SJMPAL043510_D1	2	14238	243068869	hemiLoss	1	Female	No	243,054,632	p25.3-q37.3	1663	LRP1B(972);CASP8(1289);IKZF2(1370)
SJMPAL043510	T/M	SJMPAL043510_D1	3	60661	197891568	hemiLoss	1	Female	No	197,830,908	p26.3-q29	1444	PPARG(86);SETD2(345);FHIT(567);MITF(610);FOXP1(612);BTLA(760);MBNL1(1105);TBL1XR1(1227)
SJMPAL043510	T/M	SJMPAL043510_D1	4	113588417	190986338	hemiGain	3	Female	No	77,397,922	q25-q35.2	324	FBXW7(151)
SJMPAL043510	T/M	SJMPAL043510_D1	5	102196156	180700260	hemiLoss	1	Female	No	78,504,105	q21.1-q35.3	672	EBF1(465);TLX3(526)
SJMPAL043510	T/M	SJMPAL043510_D1	6	108666	170919470	hemiGain	3	Female	No	170,810,805	p25.3-q27	1343	FOXO3(947);MYB(1112);ARID1B(1235)
SJMPAL043510	T/M	SJMPAL043510_D1	7	61074194	159126310	hemiLoss	1	Female	No	98,052,117	q11.1-q36.3	809	CUX1(350);EZH2(702);KMT2C(768)
SJMPAL043510	T/M	SJMPAL043510_D1	7	57206861	57800653	hemiGain	3	Female	No	593,793	p11.2	4	
SJMPAL043510	T/M	SJMPAL043510_D1	7	27229549	56758647	hemiLoss	1	Female	No	29,529,099	p15.2-p11.2	205	IKZF1(171)
SJMPAL043510	T/M	SJMPAL043510_D1	7	41421	8258516	hemiLoss	1	Female	No	8,217,096	p22.3-p21.3	106	
SJMPAL043510	T/M	SJMPAL043510_D1	9	46587	141101939	hemiLoss	1	Female	No	141,055,353	p24.3-q34.3	1046	PSIP1(65);MLLT3(82);CDKN2A(111);CDKN2B(113);PAX5(237)
SJMPAL043510	T/M	SJMPAL043510_D1	11	83455766	134944379	hemiLoss	1	Female	No	51,488,614	q14.1-q25	434	PICALM(8);EED(9);KMT2A(247)
SJMPAL043510	T/M	SJMPAL043510_D1	12	163819	133779375	hemiLoss	1	Female	No	133,615,557	p13.33-q24.33	1296	ETV6(217);CDKN1B(227);AEBP2(275);BTG1(875);SH2B3(1057)
SJMPAL043510	T/M	SJMPAL043510_D1	14	73569475	107287663	hemiGain	3	Female	No	33,718,189	q24.2-q32.33	400	BCL11B(201)
SJMPAL043510	T/M	SJMPAL043510_D1	15	20005287	102520751	hemiLoss	1	Female	No	82,515,465	q11.1-q26.3	897	
SJMPAL043510	T/M	SJMPAL043510_D1	16	84130	90274695	hemiLoss	1	Female	No	90,190,566	p13.3-q24.3	1047	CTCF(762);CBFA2T3(1011)
SJMPAL043510	T/M	SJMPAL043510_D1	18	13697	78015180	hemiGain	3	Female	No	78,001,484	p11.32-q23	390	PTPN2(90)
SJMPAL043510	T/M	SJMPAL043510_D1	22	16114244	51224208	hemiGain	3	Female	No	35,109,965	q11.1-q13.33	590	VPREB1(123)
SJMPAL043511	NOS (T/B)	SJMPAL043511_D1	1	143418972	249218992	hemiGain	3	Female	No	105,800,021	q21.1-q44	1217	
SJMPAL043511	NOS (T/B)	SJMPAL043511_D1	6	77872189	170919470	hemiLoss	1	Female	No	93,047,282	q14.1-q27	521	FOXO3(125);MYB(290);ARID1B(413)
SJMPAL043511	NOS (T/B)	SJMPAL043511_D1	8	38275400	38477087	hemiLoss	1	Female	No	201,688	p11.23-p11.22	3	FGFR1(1)
SJMPAL043511	NOS (T/B)	SJMPAL043511_D1	19	254506	59097752	hemiGain	3	Female	No	58,843,247	p13.3-q13.43	1701	TCF3(64);SMARCA4(362)
SJMPAL043511	NOS (T/B)	SJMPAL043511_D1	21	10699687	48100155	hemiGain	3	Female	No	37,400,469	p11.2-q22.3	329	RUNX1(164)
SJMPAL043512	B/M	SJMPAL043512_D1	3	31575382	31804842	hemiLoss	1	Female	Yes	229,461	p23	3	
SJMPAL043512	B/M	SJMPAL043512_D1	12	163819	6779223	hemiGain	3	Female	Yes	6,615,405	p13.33-p13.31	83	
SJMPAL043512	B/M	SJMPAL043512_D1	22	41548008	51304566	hemiLoss	1	Female	Yes	9,756,559	q13.2-q13.33	160	
SJMPAL043513	B/M	SJMPAL043513_D1	2	220438264	243044147	hemiLoss	1	Male	Yes	22,605,884	q35-q37.3	199	
SJMPAL043513	B/M	SJMPAL043513_D1	4	152367280	153384713	hemiLoss	1	Male	Yes	1,017,434	q31.3	5	FBXW7(4)
SJMPAL043513	B/M	SJMPAL043513_D1	8	130594196	130732295	homoGain	4	Male	Yes	138,100	q24.21	0	NME*
SJMPAL043513	B/M	SJMPAL043513_D1	9	21825996	22008026	hemiLoss	1	Male	Yes	182,031	p21.3	5	CDKN2A(3);CDKN2B(5)
SJMPAL043513	B/M	SJMPAL043513_D1	10	12508956	12533288	hemiLoss	1	Male	Yes	24,333	p13	1	
SJMPAL043513	B/M	SJMPAL043513_D1	12	25404913	25539628	hemiLoss	1	Male	Yes	134,716	p12.1	0	
SJMPAL043513	B/M	SJMPAL043513_D1	12	7991175	8106127	hemiGain	3	Male	Yes	114,953	p13.31	2	
SJMPAL043513	B/M	SJMPAL043513_D1	13	48985639	49072565	homoLoss	0	Male	Yes	86,927	q14.2	3	RB1(1)
SJMPAL043513	B/M	SJMPAL043513_D1	13	24216012	115169878	homoLOH	2	Male	Yes	90,953,867	q12.12-q34	526	CDX2(45);FLT3(47);RB1(202)
SJMPAL043513	B/M	SJMPAL043513_D1	18	36036190	36118581	hemiGain	3	Male	Yes	82,392	q12.2	0	
SJMPAL043513	B/M	SJMPAL043513_D1	19	254506	5455796	hemiLoss	1	Male	Yes	5,201,291	p13.3	180	TCF3(64)
SJMPAL043513	B/M	SJMPAL043513_D1	21	47416324	48100155	hemiLoss	1	Male	Yes	683,832	q22.3	14	
SJMPAL043513	B/M	SJMPAL043513_D1	21	42124011	47409503	homoGain	4	Male	Yes	5,285,493	q22.2-q22.3	102	
SJMPAL043513	B/M	SJMPAL043513_D1	21	41719477	42120403	hemiGain	3	Male	Yes	400,927	q22.2	3	
SJMPAL043513	B/M	SJMPAL043513_D1	21	37684854	41711938	homoGain	4	Male	Yes	4,027,085	q22.12-q22.2	38	
SJMPAL043513	B/M	SJMPAL043513_D1	21	31663519	37673206	homoGain	4	Male	Yes	6,009,688	q22.11-q22.12	94	RUNX1(83)
SJMPAL043513	B/M	SJMPAL043513_D1	21	28791154	29037412	hemiLoss	1	Male	Yes	246,259	q21.3	1	
SJMPAL043513	B/M	SJMPAL043513_D1	21	17861236	28623355	hemiGain	3	Male	Yes	10,762,120	q21.1-q21.3	36	
SJMPAL043513	B/M	SJMPAL043513_D1	22	22454126	22522345	homoLoss	0	Male	Yes	68,220	q11.22	0	
SJMPAL043513	B/M	SJMPAL043513_D1	22	22390868	22600210	hemiLoss	1	Male	Yes	209,343	q11.22	1	VPREB1(1)
SJMPAL043514	T/M	SJMPAL043514_D1	1	82154	22013771	hemiLoss	1	Female	No	21,931,618	NA-p36.12	355	
SJMPAL043514	T/M	SJMPAL043514_D1	6	98962591	170919470	homoLOH	2	Female	No	71,956,880	q16.1-q27	436	FOXO3(40);MYB(205);ARID1B(328)
SJMPAL043514	T/M	SJMPAL043514_D1	9	107279933	107634691	hemiLoss	1	Female	No	354,759	q31.1	11	
SJMPAL043514	T/M	SJMPAL043514_D1	9	65629772	105246175	hemiLoss	1	Female	No	39,616,404	q12-q31.1	273	
SJMPAL043514	T/M	SJMPAL043514_D1	9	22809847	23418572	homoLoss	0	Female	No	608,726	p21.3	1	
SJMPAL043514	T/M	SJMPAL043514_D1	9	21801319	22626317	homoLoss	0	Female	No	824,999	p21.3	6	CDKN2A(3);CDKN2B(5)
SJMPAL043514	T/M	SJMPAL043514_D1	9	5304710	5337760	homoLoss	0	Female	No	33,051	p24.1	1	
SJMPAL043514	T/M	SJMPAL043514_D1	9	46587	32157861	hemiLoss	1	Female	No	32,111,275	p24.3-p21.1	136	PSIP1(65);MLLT3(82);CDKN2A(111);CDKN2B(113)
SJMPAL043514	T/M	SJMPAL043514_D1	12	121775496	122975801	hemiLoss	1	Female	No	1,200,306	q24.31	25	
SJMPAL043514	T/M	SJMPAL043514_D1	12	12495771	12769507	hemiGain	3	Female	No	273,737	p13.2	5	
SJMPAL043514	T/M	SJMPAL043514_D1	12	163819	12021657	hemiGain	3	Female	No	11,857,839	p13.33-p13.2	218	ETV6(217)
SJMPAL043514	T/M	SJMPAL043514_D1	13	48698793	51481769	hemiLoss	1	Female	No	2,782,977	q14.2-q14.3	31	RB1(3)
SJMPAL043514	T/M	SJMPAL043514_D1	16	62948963	90274695	hemiLoss	1	Female	No	27,325,733	q21-q24.3	337	CTCF(52);CBFA2T3(301)
SJMPAL043767	AUL	SJMPAL043767_D2	9	37026000	37139899	homoLoss	0	Male	No	113,900	p13.2	3	PAX5(1)
SJMPAL043767	AUL	SJMPAL043767_D2	9	46587	37024122	homoLOH	2	Male	No	36,977,536	p24.3-p13.2	239	PSIP1(65);MLLT3(82);CDKN2A(111);CDKN2B(113);PAX5(237)
SJMPAL043767	AUL	SJMPAL043767_D2	11	118362414	118859073	hemiLoss	1	Male	No	496,660	q23.3	15	KMT2A(1)
SJMPAL043767	AUL	SJMPAL043767_D2	22	22450925	22599764	hemiLoss	1	Male	No	148,840	q11.22	1	VPREB1(1)
SJMPAL043768	AUL	SJMPAL043768_D2	19	254506	59097752	hemiGain	3	Female	No	58,843,247	p13.3-q13.43	1701	TCF3(64);SMARCA4(362)
SJMPAL043769	AUL	SJMPAL043769_D2	3	11274354	12624763	hemiLoss	1	Female	No	1,350,410	p25.3-p25.2	10	PPARG(7)
SJMPAL043769	AUL	SJMPAL043769_D2	5	114515657	140615269	hemiLoss	1	Female	No	26,099,613	q22.3-q31.3	253	
SJMPAL043769	AUL	SJMPAL043769_D2	5	100165117	113984785	hemiLoss	1	Female	No	13,819,669	q21.1-q22.3	45	
SJMPAL043769	AUL	SJMPAL043769_D2	5	98296764	100071459	hemiLoss	1	Female	No	1,774,696	q21.1	3	
SJMPAL043769	AUL	SJMPAL043769_D2	5	84136777	84300216	hemiLoss	1	Female	No	163,440	q14.3	0	
SJMPAL043769	AUL	SJMPAL043769_D2	9	131464046	134025595	hemiLoss	1	Female	No	2,561,550	q34.11-q34.13	48	
SJMPAL043769	AUL	SJMPAL043769_D2	11	45491174	47570611	hemiLoss	1	Female	No	2,079,438	p11.2	46	
SJMPAL043769	AUL	SJMPAL043769_D2	11	31793051	36627193	hemiLoss	1	Female	No	4,834,143	p13-p12	47	WT1(7);LMO2(24);RAG1(45)
SJMPAL043769	AUL	SJMPAL043769_D2	12	21201663	29390501	hemiLoss	1	Female	No	8,188,839	p12.2-p11.22	51	
SJMPAL043769	AUL	SJMPAL043769_D2	15	74567025	76550938	hemiLoss	1	Female	No	1,983,914	q24.1-q24.2	48	
SJMPAL043770	AUL	SJMPAL043770_D2	19	55085925	55133906	hemiLoss	1	Male	No	47,982	q13.42	3	
SJMPAL043770	AUL	SJMPAL043770_D2	21	36278942	36422478	hemiLoss	1	Male	No	143,537	q22.12	2	RUNX1(1)
SJMPAL043770	AUL	SJMPAL043770_D2	22	18874965	19010149	hemiGain	3	Male	No	135,185	q11.21	5	
SJMPAL043771	B/M	SJMPAL043771_D1	11	118341921	118358068	hemiGain	3	Female	Yes	16,148	q23.3	1	KMT2A(1)(MLL-PTD)
SJMPAL043771	B/M	SJMPAL043771_D1	11	72889137	135006516	homoLOH	2	Female	Yes	62,117,380	q13.4-q25	525	PICALM(99);EED(100);KMT2A(338)
SJMPAL043773	T/M	SJMPAL043773_D1	1	36488199	73824909	hemiGain	3	Female	No	37,336,711	p34.3-p31.1	386	
SJMPAL043773	T/M	SJMPAL043773_D1	1	25743428	27548657	hemiGain	3	Female	No	1,805,230	p36.11	45	ARID1A(34)
SJMPAL043773	T/M	SJMPAL043773_D1	1	82154	21416435	hemiLoss	1	Female	No	21,334,282	NA-p36.12	349	
SJMPAL043773	T/M	SJMPAL043773_D1	5	14159	63753031	hemiGain	3	Female	No	63,738,873	p15.33-q12.3	298	
SJMPAL043773	T/M	SJMPAL043773_D1	7	141241540	159126310	hemiLoss	1	Female	No	17,884,771	q34-q36.3	185	EZH2(78);KMT2C(144)
SJMPAL043773	T/M	SJMPAL043773_D1	7	89254213	92256905	hemiLoss	1	Female	No	3,002,693	q21.13-q21.2	25	
SJMPAL043773	T/M	SJMPAL043773_D1	7	41421	27206688	hemiGain	3	Female	No	27,165,268	p22.3-p15.2	205	
SJMPAL043773	T/M	SJMPAL043773_D1	11	25826554	47266808	hemiLoss	1	Female	No	21,440,255	p14.3-p11.2	135	WT1(32);LMO2(49);RAG1(70)
SJMPAL043773	T/M	SJMPAL043773_D1	16	84130	1946062	hemiLoss	1	Female	No	1,861,933	p13.3	88	
SJMPAL043773	T/M	SJMPAL043773_D1	17	2220	9862216	hemiLoss	1	Female	No	9,859,997	p13.3-p13.1	271	TP53(217);GAS7(271)
SJMPAL043774	KMT2Ar	SJMPAL043774_D2	3	102337866	102948373	hemiLoss	1	Male	No	610,508	q12.3-q13.11	0	
SJMPAL043774	KMT2Ar	SJMPAL043774_D2	9	20428137	33888490	hemiLoss	1	Male	No	13,460,354	p21.3-p13.3	82	MLLT3(1);CDKN2A(29);CDKN2B(31)
SJMPAL044948	T/M	SJMPAL044948_D1	3	126169230	197891568	homoLOH	2	Male	No	71,722,339	q21.3-q29	555	MBNL1(216);TBL1XR1(338)
SJMPAL044948	T/M	SJMPAL044948_D1	5	141122067	148861846	hemiLoss	1	Male	No	7,739,780	q31.3-q32	56	
SJMPAL044948	T/M	SJMPAL044948_D1	5	110256843	122614010	hemiLoss	1	Male	No	12,357,168	q22.1-q23.2	67	
SJMPAL044948	T/M	SJMPAL044948_D1	5	91334259	91822322	hemiLoss	1	Male	No	488,064	q14.3	0	
SJMPAL044948	T/M	SJMPAL044948_D1	5	81669092	90676483	hemiLoss	1	Male	No	9,007,392	q14.2-q14.3	34	MEF2C(22)
SJMPAL044948	T/M	SJMPAL044948_D1	6	137462218	170919470	hemiLoss	1	Male	No	33,457,253	q23.3-q27	219	ARID1B(111)
SJMPAL044948	T/M	SJMPAL044948_D1	6	105489184	105821449	hemiLoss	1	Male	No	332,266	q16.3-q21	5	
SJMPAL044948	T/M	SJMPAL044948_D1	6	103647634	104842841	hemiLoss	1	Male	No	1,195,208	q16.3	0	
SJMPAL044948	T/M	SJMPAL044948_D1	6	102045641	102778140	hemiLoss	1	Male	No	732,500	q16.3	1	
SJMPAL044948	T/M	SJMPAL044948_D1	6	82274375	100403514	hemiLoss	1	Male	No	18,129,140	q14.1-q16.2	83	
SJMPAL044948	T/M	SJMPAL044948_D1	6	57386026	81668203	hemiLoss	1	Male	No	24,282,178	p11.2-q14.1	68	
SJMPAL044948	T/M	SJMPAL044948_D1	7	38596612	54796443	hemiLoss	1	Male	No	16,199,832	p14.1-p11.2	97	IKZF1(86)
SJMPAL044948	T/M	SJMPAL044948_D1	7	34347206	34684184	hemiLoss	1	Male	No	336,979	p14.3	1	
SJMPAL044948	T/M	SJMPAL044948_D1	7	41421	20641104	hemiLoss	1	Male	No	20,599,684	p22.3-p21.1	148	
SJMPAL044948	T/M	SJMPAL044948_D1	21	10699687	48100155	hemiGain	3	Male	No	37,400,469	p11.2-q22.3	329	RUNX1(164)
SJMPAL044949	NOS (T/B)	SJMPAL044949_D1	8	130156776	130253287	hemiGain	3	Male	No	96,512	q24.21	1	NME*
SJMPAL044949	NOS (T/B)	SJMPAL044949_D1	9	21901263	22056499	homoLoss	0	Male	No	155,237	p21.3	4	CDKN2A(2);CDKN2B(4)
SJMPAL044949	NOS (T/B)	SJMPAL044949_D1	9	21740070	22086840	hemiLoss	1	Male	No	346,771	p21.3	5	CDKN2A(3);CDKN2B(5)
SJMPAL044956	B/M	SJMPAL044956_D1	3	151905908	152047717	hemiLoss	1	Male	Yes	141,810	q25.1	2	MBNL1(2)
SJMPAL044956	B/M	SJMPAL044956_D1	9	20625228	46936811	hemiLoss	1	Male	Yes	26,311,584	p21.3-p11.2	207	CDKN2A(27);CDKN2B(29);PAX5(153)
SJMPAL044956	B/M	SJMPAL044956_D1	22	22570417	22599537	hemiLoss	1	Male	Yes	29,121	q11.22	1	VPREB1(1)
SJMPAL046466	B/M	SJMPAL046466_D1	12	11754985	12160475	hemiLoss	1	Female	No	405,491	p13.2	2	ETV6(1)
SJMPAL046466	B/M	SJMPAL046466_D1	22	49393541	50003853	hemiGain	3	Female	No	610,313	q13.32-q13.33	2	
SJMPAL046466	B/M	SJMPAL046466_D1	22	25664408	25919492	hemiLoss	1	Female	No	255,085	q11.23-q12.1	4	
SJMPAL046467	B/M	SJMPAL046467_D1	1	82154	52326459	homoLOH	2	Female	No	52,244,306	NA-p32.3	834	ARID1A(456)
SJMPAL046467	B/M	SJMPAL046467_D1	12	163819	6779223	hemiGain	3	Female	No	6,615,405	p13.33-p13.31	83	
SJMPAL046467	B/M	SJMPAL046467_D1	17	28690221	81057996	homoLOH	2	Female	No	52,367,776	q11.2-q25.3	972	NF1(14);SUZ12(25)
SJMPAL046467	B/M	SJMPAL046467_D1	19	254506	1615152	hemiLoss	1	Female	No	1,360,647	p13.3	64	TCF3(64)
SJMPAL046467	B/M	SJMPAL046467_D1	X	44487950	44734610	hemiLoss	1	Female	No	246,661	p11.3	2	KDM6A(2)
SJMPAL046468	B/M	SJMPAL046468_D2	7	41421	53718191	hemiLoss	1	Male	No	53,676,771	p22.3-p12.1	387	IKZF1(381)
SJMPAL046468	B/M	SJMPAL046468_D3	7	41421	53718191	hemiLoss	1	Male	No	53,676,771	p22.3-p12.1	387	IKZF1(381)
SJMPAL046469	AUL	SJMPAL046469_D1	3	134317337	141143430	hemiGain	3	Male	No	6,826,094	q22.2-q23	44	
SJMPAL046469	AUL	SJMPAL046469_D1	4	127093759	129882104	hemiLoss	1	Male	No	2,788,346	q28.1-q28.2	11	
SJMPAL046469	AUL	SJMPAL046469_D1	5	158136406	180700260	hemiLoss	1	Male	No	22,563,855	q33.3-q35.3	208	EBF1(1);TLX3(62)
SJMPAL046469	AUL	SJMPAL046469_D1	5	149505624	158131574	homoLOH	2	Male	No	8,625,951	q32-q33.3	73	EBF1(73)
SJMPAL046469	AUL	SJMPAL046469_D1	5	124082553	124621337	homoLoss	0	Male	No	538,785	q23.2	1	
SJMPAL046469	AUL	SJMPAL046469_D1	5	98099369	149505489	hemiLoss	1	Male	No	51,406,121	q15-q32	406	
SJMPAL046469	AUL	SJMPAL046469_D1	6	111589755	170919470	hemiGain	3	Male	No	59,329,716	q21-q27	370	MYB(139);ARID1B(262)
SJMPAL046469	AUL	SJMPAL046469_D1	7	50345765	50462935	hemiLoss	1	Male	No	117,171	p12.2	1	IKZF1(1)
SJMPAL046469	AUL	SJMPAL046469_D1	12	92206482	92537466	hemiLoss	1	Male	No	330,985	q21.33	2	BTG1(2)
SJMPAL046469	AUL	SJMPAL046469_D1	21	36213879	45119104	hemiGain	3	Male	No	8,905,226	q22.12-q22.3	93	RUNX1(1)
SJMPAL046469	AUL	SJMPAL046469_D1	22	22517205	22599764	homoLoss	0	Male	No	82,560	q11.22	1	VPREB1(1)
SJMPAL046470	B/M	SJMPAL046470_D2	3	60661	198022430	hemiGain	3	Female	Yes	197,961,770	p26.3-q29	1444	PPARG(86);SETD2(345);FHIT(567);MITF(610);FOXP1(612);BTLA(760);MBNL1(1105);TBL1XR1(1227)
SJMPAL046470	B/M	SJMPAL046470_D3	3	60661	198022430	hemiGain	3	Female	Yes	197,961,770	p26.3-q29	1444	PPARG(86);SETD2(345);FHIT(567);MITF(610);FOXP1(612);BTLA(760);MBNL1(1105);TBL1XR1(1227)
SJMPAL046470	B/M	SJMPAL046470_D2	4	18058	191154276	hemiLoss	1	Female	Yes	191,136,219	p16.3-q35.2	982	RAP1GDS1(563);LEF1(627);FBXW7(809)
SJMPAL046470	B/M	SJMPAL046470_D3	4	18058	191154276	hemiLoss	1	Female	Yes	191,136,219	p16.3-q35.2	982	RAP1GDS1(563);LEF1(627);FBXW7(809)
SJMPAL046470	B/M	SJMPAL046470_D2	6	108666	171115067	hemiGain	3	Female	Yes	171,006,402	p25.3-q27	1343	FOXO3(947);MYB(1112);ARID1B(1235)
SJMPAL046470	B/M	SJMPAL046470_D3	6	108666	171115067	hemiGain	3	Female	Yes	171,006,402	p25.3-q27	1343	FOXO3(947);MYB(1112);ARID1B(1235)
SJMPAL046470	B/M	SJMPAL046470_D2	8	46246	146364022	hemiGain	3	Female	Yes	146,317,777	p23.3-q24.3	941	PCM1(149);FGFR1(314);MYC(771)
SJMPAL046470	B/M	SJMPAL046470_D3	8	46246	146364022	hemiGain	3	Female	Yes	146,317,777	p23.3-q24.3	941	PCM1(149);FGFR1(314);MYC(771)
SJMPAL046470	B/M	SJMPAL046470_D2	10	94316	135534747	homoGain	4	Female	Yes	135,440,432	p15.3-q26.3	1028	WAC(200)
SJMPAL046470	B/M	SJMPAL046470_D3	10	94316	135534747	homoGain	4	Female	Yes	135,440,432	p15.3-q26.3	1028	WAC(200)
SJMPAL046470	B/M	SJMPAL046470_D2	11	36599069	36634078	hemiLoss	1	Female	Yes	35,010	p12	3	RAG1(1)
SJMPAL046470	B/M	SJMPAL046470_D3	11	36599069	36634078	hemiLoss	1	Female	Yes	35,010	p12	3	RAG1(1)
SJMPAL046470	B/M	SJMPAL046470_D2	14	19004211	107349540	hemiGain	3	Female	Yes	88,345,330	q11.1-q32.33	863	BCL11B(664)
SJMPAL046470	B/M	SJMPAL046470_D3	14	19004211	107349540	hemiGain	3	Female	Yes	88,345,330	q11.1-q32.33	863	BCL11B(664)
SJMPAL046470	B/M	SJMPAL046470_D2	15	38506070	38542954	hemiLoss	1	Female	Yes	36,885	q14	0	
SJMPAL046470	B/M	SJMPAL046470_D3	15	38506070	38542954	hemiLoss	1	Female	Yes	36,885	q14	0	
SJMPAL046470	B/M	SJMPAL046470_D2	18	13697	78077248	hemiGain	3	Female	Yes	78,063,552	p11.32-q23	390	PTPN2(90)
SJMPAL046470	B/M	SJMPAL046470_D3	18	13697	78077248	hemiGain	3	Female	Yes	78,063,552	p11.32-q23	390	PTPN2(90)
SJMPAL046470	B/M	SJMPAL046470_D2	21	10699687	48129895	homoGain	4	Female	Yes	37,430,209	p11.2-q22.3	329	RUNX1(164)
SJMPAL046470	B/M	SJMPAL046470_D3	21	10699687	48129895	homoGain	4	Female	Yes	37,430,209	p11.2-q22.3	329	RUNX1(164)
SJMPAL046470	B/M	SJMPAL046470_D2	22	22388006	22522345	hemiLoss	1	Female	Yes	134,340	q11.22	0	VPREB1(Adjacent)
SJMPAL046470	B/M	SJMPAL046470_D3	22	22388006	22522345	hemiLoss	1	Female	Yes	134,340	q11.22	0	VPREB1(Adjacent)
SJMPAL046470	B/M	SJMPAL046470_D2	X	2699676	155270560	hemiGain	3	Female	Yes	152,570,885	p22.33-q28	1053	KDM6A(209);PHF6(802)
SJMPAL046470	B/M	SJMPAL046470_D3	X	2699676	155270560	hemiGain	3	Female	Yes	152,570,885	p22.33-q28	1053	KDM6A(209);PHF6(802)
SJMPAL046472	B/M	SJMPAL046472_D1	1	113815518	114471545	hemiLoss	1	Male	No	656,028	p13.2	9	
SJMPAL046472	B/M	SJMPAL046472_D1	3	60066360	60427976	hemiLoss	1	Male	No	361,617	p14.2	1	FHIT(1)
SJMPAL046472	B/M	SJMPAL046472_D1	9	21979204	22008026	homoLoss	0	Male	No	28,823	p21.3	3	CDKN2A(1);CDKN2B(3)
SJMPAL046472	B/M	SJMPAL046472_D1	9	46587	37486383	homoLOH	2	Male	No	37,439,797	p24.3-p13.2	244	PSIP1(65);MLLT3(82);CDKN2A(111);CDKN2B(113);PAX5(237)
SJMPAL046472	B/M	SJMPAL046472_D1	11	46292055	48200391	hemiLoss	1	Male	No	1,908,337	p11.2	45	
SJMPAL046472	B/M	SJMPAL046472_D1	12	110597304	112766434	hemiLoss	1	Male	No	2,169,131	q24.11-q24.13	34	SH2B3(19)
SJMPAL046472	B/M	SJMPAL046472_D1	12	25404913	25541493	hemiLoss	1	Male	No	136,581	p12.1	0	
SJMPAL046472	B/M	SJMPAL046472_D1	12	10384918	13381408	hemiLoss	1	Male	No	2,996,491	p13.2-p13.1	62	ETV6(38);CDKN1B(48)
SJMPAL046472	B/M	SJMPAL046472_D1	13	49076903	49172656	hemiLoss	1	Male	No	95,754	q14.2	2	
SJMPAL046472	B/M	SJMPAL046472_D1	13	48985639	49075495	homoLoss	0	Male	No	89,857	q14.2	3	RB1(1)
SJMPAL046472	B/M	SJMPAL046472_D1	19	1625811	1788247	hemiLoss	1	Male	No	162,437	p13.3	3	TCF3(1)
SJMPAL046472	B/M	SJMPAL046472_D1	22	25664408	25919492	hemiLoss	1	Male	No	255,085	q11.23-q12.1	4	
SJMPAL046472	B/M	SJMPAL046472_D1	22	22568610	22599764	hemiLoss	1	Male	No	31,155	q11.22	1	VPREB1(1)
