Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	1	3208470	12276894	5053	-0.0021
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	1	12278074	12278090	2	-2.0733
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	1	12279675	19564963	3820	-0.0077
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	1	19565715	19566237	2	-2.848
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	1	19568619	204479941	93181	-1e-04
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	1	204488709	204496562	3	-1.9355
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	1	204606274	245880329	26782	-0.0012
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	2	474222	55864307	32464	-0.0115
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	2	55864990	55882136	8	-0.9689
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	2	55882948	119975935	30164	-0.0054
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	2	119977632	119978283	2	-1.7439
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	2	119980408	222179257	56537	-0.007
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	2	222179704	222179760	2	1.8178
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	2	222180806	240609280	11149	-0.007
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	2	240612322	240612611	2	-1.8815
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	2	240614358	242124735	778	-0.012
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	3	526235	199023074	106332	0.0049
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	4	1043934	189836143	102708	0.0035
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	5	967233	180293075	100457	-2e-04
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	6	959281	44884114	26440	-0.004
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	6	44884347	44888679	3	-1.6686
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	6	44890877	79403177	16859	0.0058
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	6	79407431	79409436	2	-2.4746
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	6	79409724	160102086	47676	-4e-04
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	6	160102176	160102251	2	-1.6235
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	6	160105962	170745844	5463	-0.0012
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	7	671810	158077879	81280	0.0017
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	8	607667	145304484	81494	0.0018
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	9	779932	77468652	28259	0.0029
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	9	77469639	77471183	4	-1.8264
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	9	77471831	140058573	39643	0.0033
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	10	405240	111925280	65509	-0.0013
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	10	111925455	111931111	3	2.068
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	10	111933510	127980186	11395	-0.005
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	10	127980301	127980417	2	-1.956
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	10	127986461	129478869	1148	-0.0098
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	10	129483627	129483674	2	-1.3301
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	10	129484586	135075077	2687	0.0015
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	11	446120	133647740	77144	0.0023
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	12	760163	25913012	14764	-0.0025
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	12	25913116	25915452	2	-2.0009
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	12	25918474	131671419	59069	1e-04
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	13	18348806	106180636	51850	0.003
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	13	106182239	106182711	2	2.0346
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	13	106183236	114005560	4744	-0.0102
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	14	19571208	94592393	43429	0.0019
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	14	94592580	94595367	5	-1.3117
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	14	94597105	105059083	5920	-0.0045
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	15	21238778	99701830	44444	-0.0015
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	16	593460	49937069	16656	-0.0032
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	16	49937566	49941161	6	-1.4523
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	16	49943485	87907437	24104	0.0053
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	17	933971	78510305	36849	0.0038
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	18	319586	46836948	26654	0.0049
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	18	46837032	46837305	5	-1.1968
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	18	46846801	75210228	15968	0.0023
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	19	235018	3852888	859	0.0413
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	19	3853555	3853722	2	-2.153
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	19	3854004	49171335	17010	0.0023
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	19	49171599	49171600	2	-2.8426
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	19	49174547	63570038	5970	-0.0027
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	20	403764	61690281	37195	-0.0032
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	21	14269492	35165921	13225	3e-04
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	21	35167068	35167106	2	-2.4073
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	21	35177477	46503202	7315	0.0016
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	22	15803930	47717016	16915	4e-04
ROOTY_p_TCGAb27and38_SNP_N_GenomeWideSNP_6_E11_584508	X	3167107	154558783	63576	0.0142
