Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	51598	9848563	4581	-0.0047
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	9848816	9853547	2	-5.1668
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	9854235	37952872	14710	0.0026
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	37961428	37961729	2	-5.2259
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	37961794	72535958	20893	6e-04
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	72541006	72581960	42	1.139
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	72582019	147220620	30525	0.0096
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	147291426	147603326	144	0.4994
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	147603340	150822151	1448	0.0216
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	150822330	150852342	29	-1.7436
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	150852741	179158033	18048	0.0106
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	179159575	179163525	6	-4.1669
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	179165607	233142552	34619	0.0035
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	233145561	233145580	2	4.2764
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	233146489	238416539	3673	-0.01
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	238418251	238425005	4	-2.3146
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	238425046	238728509	279	-0.0175
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	238732508	238732779	2	-5.0323
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	238733231	247191011	5338	-0.0044
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	2	2784	15620889	11118	0.0093
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	2	15622395	15622495	2	-4.6922
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	2	15623139	242738129	131317	0.0061
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	3	35345	4442526	3713	0.0522
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	3	4443080	4444949	2	-5.1439
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	3	4445714	163990886	94051	0.0098
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	3	163990962	164109297	73	0.6884
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	3	164111308	187199639	13158	0.0184
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	3	187201010	187204531	3	-2.6843
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	3	187205496	189391402	1695	8e-04
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	3	189391832	189392447	3	-2.908
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	3	189393504	196766953	4788	0.011
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	3	196767187	196932593	29	-1.1234
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	3	196941179	199380515	1120	-0.0186
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	4	2281	69057550	40196	0.0071
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	4	69057755	69171930	63	-1.9741
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	4	69187710	78385920	5067	0.0196
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	4	78386627	78387114	3	-2.4789
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	4	78387881	89955588	6861	0.0179
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	4	89957192	89959101	4	-2.8379
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	4	89961787	173225723	48268	0.0126
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	4	173225741	173226108	11	-2.2553
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	4	173232554	191261904	11539	0.0316
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	5	68532	11472701	8761	-0.0066
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	5	11476592	11511084	30	-1.0124
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	5	11511185	179470245	97916	0.0089
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	5	179470333	179480185	7	-2.3848
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	5	179488958	180722926	597	0.0211
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	94661	32517220	21428	0.0048
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	32520413	32520570	4	-3.1771
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	32535726	32539530	14	0.2876
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	32556107	32617454	24	1.5204
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	32624906	67064983	18224	0.009
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	67065744	67111682	60	-0.5332
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	67113728	95340182	17527	0.0157
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	95342061	95347745	3	-3.2305
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	95349113	116999839	12613	0.0103
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	117005533	117005695	2	-4.259
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	117006015	150535548	20500	0.0088
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	150535762	150536566	3	-3.3372
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	150538658	170892930	13650	-0.0032
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	7	52911	27522439	18651	0.019
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	7	27523114	27526482	4	-3.9838
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	7	27527347	48896149	13993	0.0025
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	7	48896160	48899553	3	-4.2643
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	7	48899627	109229196	31315	0.0118
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	7	109240949	109241218	7	-3.3331
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	7	109241465	142154515	19496	0.0073
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	7	142156294	142165614	27	-2.1654
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	7	142165684	158819765	9917	1e-04
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	21254	11618857	10352	0.0289
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	11619255	11621250	2	-3.8736
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	11621263	23814063	9266	-9e-04
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	23815113	23815200	2	-4.2386
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	23815705	25030393	814	-0.0039
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	25030439	25040250	25	-1.8742
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	25047021	61946902	19815	-0.0031
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	61947555	61947798	2	-4.1212
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	61947812	112364257	29050	0.0066
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	112364378	112364436	3	-2.9904
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	112370428	133575808	13650	0.0081
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	133575983	133576286	2	-5.5735
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	133576938	143848757	7264	0.0054
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	143854267	143876929	4	-4.0771
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	143878907	146268959	760	-0.0112
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	9	36587	4084806	3953	0.0227
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	9	4089325	4092362	8	-1.536
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	9	4092443	30643463	20457	0.0264
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	9	30644170	30644312	2	-3.4492
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	9	30647215	44569219	5277	0.0097
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	9	44667855	44777523	33	-1.2169
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	9	44780914	138017073	44848	1e-04
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	9	138018705	138038075	3	-3.6055
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	9	138047537	140211215	714	-0.0615
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	10	62809	87940517	55392	0.0063
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	10	87941558	87941666	2	-4.7671
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	10	87943856	101268722	7974	-0.0145
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	10	101272190	101277754	3	-3.5539
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	10	101277877	135356694	22376	0.0026
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	11	188572	3083290	1068	-0.0019
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	11	3086529	3086541	2	-5.1809
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	11	3089750	4925086	1207	0.0206
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	11	4926819	4930605	24	-2.3287
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	11	4931740	92708391	51477	0.0111
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	11	92710328	92718405	6	-3.2073
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	11	92719348	134449982	28378	0.0028
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	12	20703	739577	387	-0.0109
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	12	739610	744290	13	-1.2906
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	12	745615	33278024	21242	0.0129
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	12	33280096	33286409	4	-3.1376
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	12	33286685	39483621	2463	0.0595
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	12	39484052	39484411	2	-4.5989
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	12	39485171	132288262	56278	0.0033
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	13	17924949	22530678	2709	0.0272
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	13	22530860	22531515	11	-2.8728
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	13	22536195	114126499	58155	0.0091
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	14	18072124	36355107	10528	0.0111
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	14	36356972	36357355	2	-5.4174
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	14	36360856	106356482	41961	0.0074
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	15	18276341	100286563	49013	0.0094
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	16	777	75876003	38368	0.0025
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	16	75876072	75877400	2	-4.5407
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	16	75878016	84833357	8634	-0.0018
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	16	84834020	84834318	2	-6.1649
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	16	84834382	88815036	2244	-0.0221
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	17	526	18299671	10641	-0.0027
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	17	18299674	18405946	27	-1.3699
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	17	18409922	24401864	2468	-0.0081
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	17	24402884	24403247	2	3.2982
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	17	24405657	41557216	8925	0.0072
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	17	41557232	42107479	142	-0.4617
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	17	42120174	78643088	20219	0.0039
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	18	1543	76115554	48076	0.0063
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	19	41910	63789666	27424	0.0053
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	9305	559744	368	0.0135
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	560312	565808	3	2.1318
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	567378	1519783	761	-0.0215
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	1519889	1547061	25	-0.9637
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	1547078	2812343	964	-0.0012
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	2815681	2816716	2	-3.3127
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	2817421	2857991	19	0.0487
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	2858758	2858880	2	-2.6585
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	2860565	17696967	10925	0.0074
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	17697818	17697899	2	-4.7206
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	17699709	51622402	19481	0.0041
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	51622685	51623358	2	-4.5237
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	51624806	62426597	7276	-0.0104
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	21	9758742	10061143	79	-0.5309
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	21	10063693	34889000	14662	0.0095
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	21	34889485	34892216	2	-4.0314
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	21	34892482	46921385	8264	0.0047
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	14432528	20587602	2861	-0.0297
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	20587652	20591388	2	-6.0184
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	20592057	35881433	10812	-0.0058
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	35881553	35885778	3	-3.7316
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	35888074	43701081	4281	-0.0039
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	43702597	43704125	3	-2.9897
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	43704840	45414760	982	0.0022
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	45415115	45416745	2	-6.7199
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	45417951	47203379	1538	-0.0031
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	47208708	47209058	2	-5.8833
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	47210207	48036400	641	0.0043
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	48036422	48036552	2	-4.8003
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	48036679	49581321	789	0.0088
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	X	108477	154835548	81144	-0.022
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	Y	2710438	57427647	8529	-0.9604
