Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	61735	9925976	4581	-0.0047
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	9926229	9930960	2	-5.1668
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	9931648	38180285	14708	0.0025
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	38188841	38189142	2	-5.2259
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	38189207	72763370	20964	3e-04
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	72768418	72809372	42	1.139
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	72809431	148953996	30512	0.0096
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	149024802	149336702	144	0.4994
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	149336716	152555527	1448	0.0216
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	152555706	152585718	29	-1.7436
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	152586117	180891410	18046	0.0105
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	180892952	180896902	6	-4.1669
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	180898984	235075929	34618	0.0034
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	235078938	235078957	2	4.2764
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	235079866	240349916	3673	-0.01
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	240351628	240358382	4	-2.3146
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	240358423	240661886	279	-0.0175
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	240665885	240666156	2	-5.0323
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	1	240666608	249224388	5337	-0.0045
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	2	12784	15703438	11117	0.0093
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	2	15704944	15705044	2	-4.6922
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	2	15705688	243089456	131307	0.0062
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	3	60345	4467526	3713	0.0522
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	3	4468080	4469949	2	-5.1439
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	3	4470714	162508192	94046	0.0098
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	3	162508268	162626603	73	0.6884
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	3	162628614	185716945	13159	0.0184
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	3	185718316	185721837	3	-2.6843
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	3	185722802	187908708	1695	8e-04
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	3	187909138	187909753	3	-2.908
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	3	187910810	195285664	4788	0.011
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	3	195285898	195446922	29	-1.1234
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	3	195455508	197896118	1120	-0.0186
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	4	12281	69374955	40199	0.0071
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	4	69375160	69489335	63	-1.9741
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	4	69505115	78166896	5064	0.019
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	4	78167603	78168090	3	-2.4789
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	4	78168857	89736565	6862	0.0183
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	4	89738169	89740078	4	-2.8379
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	4	89742764	172989148	48271	0.0127
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	4	172989166	172989533	11	-2.2553
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	4	172995979	191027923	11538	0.0316
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	5	15532	11419701	8763	-0.0066
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	5	11423592	11458084	30	-1.0124
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	5	11458185	179537639	97916	0.0089
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	5	179537727	179547579	7	-2.3848
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	5	179556352	180790320	597	0.0211
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	149661	32409242	21427	0.0048
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	32412435	32412592	4	-3.1771
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	32427748	32431552	14	0.2876
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	32448129	32509476	24	1.5204
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	32516928	67008262	18226	0.009
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	67009023	67054961	60	-0.5332
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	67057007	95283461	17524	0.0156
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	95285340	95291024	3	-3.2305
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	95292392	116893146	12615	0.0103
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	116898840	116899002	2	-4.259
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	116899322	150493855	20505	0.0089
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	150494069	150494873	3	-3.3372
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	6	150496965	171051005	13650	-0.0032
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	7	43355	27555914	18649	0.019
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	7	27556589	27559957	4	-3.9838
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	7	27560822	48925603	13992	0.0024
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	7	48925614	48929007	3	-4.2643
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	7	48929081	109441960	31320	0.0119
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	7	109453713	109453982	7	-3.3331
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	7	109454229	142474939	19498	0.0076
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	7	142476719	142486045	27	-2.1654
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	7	142486115	159127004	9916	0
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	31254	11581448	10351	0.0288
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	11581846	11583841	2	-3.8736
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	11583854	23758118	9267	-9e-04
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	23759168	23759255	2	-4.2386
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	23759760	24974476	814	-0.0039
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	24974522	24984333	25	-1.8742
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	24991104	61784348	19816	-0.003
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	61785001	61785244	2	-4.1212
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	61785258	112295081	29055	0.0067
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	112295202	112295260	3	-2.9904
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	112301252	133506626	13652	0.0082
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	133506801	133507104	2	-5.5735
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	133507756	143851755	7264	0.0054
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	143857265	143879927	4	-4.0771
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	8	143881905	146298155	760	-0.0112
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	9	46587	4094806	3955	0.0224
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	9	4099325	4102362	8	-1.536
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	9	4102443	30653463	20458	0.0264
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	9	30654170	30654312	2	-3.4492
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	9	30657215	44629223	5281	0.0097
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	9	44727859	44837527	33	-1.2169
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	9	44840918	138877252	44855	1e-04
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	9	138878884	138898254	3	-3.6055
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	9	138907716	141091394	714	-0.0615
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	10	72809	87950537	55387	0.0062
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	10	87951578	87951686	2	-4.7671
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	10	87953876	101278732	7977	-0.0144
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	10	101282200	101287764	3	-3.5539
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	10	101287887	135506704	22376	0.0026
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	11	198572	3126714	1067	-0.0019
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	11	3129953	3129965	2	-5.1809
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	11	3133174	4968510	1207	0.0206
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	11	4970243	4974029	24	-2.3287
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	11	4975164	93068743	51475	0.0111
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	11	93070680	93078757	6	-3.2073
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	11	93079700	134944770	28372	0.0028
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	12	150442	869316	387	-0.0109
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	12	869349	874029	13	-1.2906
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	12	875354	33386757	21239	0.0129
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	12	33388829	33395142	4	-3.1376
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	12	33395418	41197354	2462	0.0597
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	12	41197785	41198144	2	-4.5989
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	12	41198904	133778189	56275	0.0032
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	13	19026949	23632678	2709	0.0272
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	13	23632860	23633515	11	-2.8728
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	13	23638195	115108397	58151	0.0091
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	14	19002124	37285356	10528	0.0111
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	14	37287221	37287604	2	-5.4174
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	14	37291105	107285437	41958	0.0074
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	15	20016328	102469040	49011	0.0094
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	16	60777	77318502	38293	0.0028
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	16	77318571	77319899	2	-4.5407
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	16	77320515	86275856	8634	-0.0018
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	16	86276519	86276817	2	-6.1649
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	16	86276881	90287535	2247	-0.0231
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	17	526	18358946	10642	-0.0026
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	17	18358949	18465221	27	-1.3699
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	17	18469197	27377738	2468	-0.0081
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	17	27378758	27379121	2	3.2982
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	17	27381531	44201438	8923	0.0071
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	17	44201454	44752300	142	-0.4617
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	17	44764994	81049726	20220	0.0039
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	18	11543	78014582	48073	0.0063
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	19	90910	59097854	27423	0.0053
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	61305	611744	368	0.0135
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	612312	617808	3	2.1318
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	619378	1571783	761	-0.0215
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	1571889	1599061	25	-0.9637
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	1599078	2864343	965	-9e-04
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	2867681	2868716	2	-3.3127
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	2869421	2909991	19	0.0487
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	2910758	2910880	2	-2.6585
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	2912565	17748967	10926	0.0072
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	17749818	17749899	2	-4.7206
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	17751709	52188995	19481	0.0041
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	52189278	52189951	2	-4.5237
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	20	52191399	62956153	7276	-0.0104
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	21	10736871	11039272	79	-0.5309
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	21	11041822	35967130	14663	0.0095
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	21	35967615	35970346	2	-4.0314
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	21	35970612	48096957	8263	0.0047
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	16052528	22257602	2861	-0.0297
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	22257652	22261388	2	-6.0184
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	22262057	37551487	10811	-0.0058
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	37551607	37555832	3	-3.7316
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	37558128	45322417	4281	-0.0039
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	45323933	45325461	3	-2.9897
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	45326176	47036096	982	0.0022
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	47036451	47038081	2	-6.7199
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	47039287	48824715	1538	-0.0031
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	48830044	48830394	2	-5.8833
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	48831543	49650396	641	0.0043
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	49650418	49650548	2	-4.8003
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	22	49650675	51234455	789	0.0088
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	X	168477	155182354	81134	-0.0216
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_F03_228732	Y	2650438	59018259	8569	-0.9605
