Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	1	3218610	16495770	6595	0.004
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	1	16495846	16495914	2	-4.5906
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	1	16497574	20152010	1919	-0.0122
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	1	20158241	20158334	2	-4.0872
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	1	20158604	47933523	13256	0.0096
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	1	47938129	47942422	2	-4.6587
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	1	47944248	53787579	2836	-0.0028
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	1	53787633	53796783	3	-3.5472
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	1	53796901	113054936	34817	0.0026
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	1	113054973	113059220	3	-4.8278
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	1	113060233	158427551	8300	0.0029
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	1	158432808	158432985	2	-3.9574
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	1	158433074	247813706	53615	-0.0015
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	2	484222	20384929	12121	0.0083
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	2	20386339	20388959	3	-2.9817
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	2	20393569	55182950	17974	3e-04
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	2	55183266	55183627	2	-4.8162
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	2	55186394	74119662	10235	-0.0013
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	2	74120181	74120785	3	-3.8847
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	2	74121336	242476062	83937	-0.0011
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	3	2212571	197538677	100763	-0.0031
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	4	1053934	4952811	1589	-0.0029
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	4	4953057	4964637	6	-2.6221
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	4	4968780	10340486	2830	-0.0135
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	4	10346245	10346550	2	-4.1349
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	4	10346956	17331894	4918	0.0025
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	4	17334803	17335027	2	-4.8706
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	4	17335530	188763651	88333	-2e-04
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	5	914233	157028947	81866	-2e-04
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	5	157030395	157032783	2	-5.8941
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	5	157038616	169897152	8103	9e-04
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	5	169897753	169898398	2	-4.2386
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	5	169904854	170971863	575	0.0235
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	5	170972663	170973258	3	-2.4262
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	5	170974621	179260034	4152	0.0102
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	5	179260213	179260951	4	-1.9313
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	5	179264731	180360469	462	-0.0546
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	6	1014281	1345648	309	-0.0356
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	6	1346541	1346561	2	-3.8944
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	6	1347118	7204736	3896	-0.0104
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	6	7208007	7217220	3	-3.7616
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	6	7222447	30878919	13557	0.0118
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	6	30882431	30887344	2	-5.2761
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	6	30890871	108451893	38420	0.0027
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	6	108458997	108460010	2	-4.0101
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	6	108467024	169789010	34438	3e-04
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	6	169789865	169789993	2	-6.4115
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	6	169790050	170903919	461	0.0177
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	7	705284	20503965	9090	0.002
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	7	20505823	20506245	4	-2.6738
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	7	20516346	48925603	17471	0.0055
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	7	48925614	48926214	2	-4.1349
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	7	48929007	137730578	40663	0.0018
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	7	137731418	137732209	2	-4.0532
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	7	137733993	148241939	5068	0.0059
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	7	148243350	148243735	2	-3.2227
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	7	148244568	151554621	1391	0.0076
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	7	151555526	151558312	3	-3.2086
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	7	151558997	156123245	2202	-0.0285
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	7	156127964	156128006	2	-5.4105
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	7	156135742	158385118	1007	-0.0286
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	8	617667	96192034	49407	-1e-04
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	8	96193895	96195171	3	-3.2499
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	8	96197655	145232496	27824	0.0028
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	9	789932	13530487	6408	0.0047
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	9	13530515	13530711	2	-5.9274
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	9	13531732	140938752	57482	-0.005
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	10	415240	102932435	56613	-0.0027
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	10	102936879	102938188	2	-5.0573
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	10	102938523	125712327	14391	0.0024
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	10	125725809	125728064	2	3.2423
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	10	125728086	135225087	4918	-0.0196
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	11	456120	2022712	387	-0.0313
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	11	2022804	2024683	3	-5.5234
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	11	2028088	60128171	30596	2e-04
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	11	60128321	60145822	5	-3.1563
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	11	60148997	131118618	39911	-5e-04
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	11	131120758	131121515	4	-3.3328
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	11	131132698	131466024	275	0.0403
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	11	131467794	131467856	2	-6.5368
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	11	131472834	133561399	1236	0.0026
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	11	133563309	133563491	2	-4.4547
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	11	133564792	134140152	223	0.0448
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	12	889902	116356475	61923	-0.0047
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	12	116356707	116371320	5	-3.3957
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	12	116371341	125033901	4313	0.0043
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	12	125033933	125035703	4	-3.842
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	12	125038296	133155338	3463	-0.0284
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	13	19450806	90478371	38583	-0.0013
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	13	90480383	90487155	2	-5.5833
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	13	90491159	90506789	13	-0.0987
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	13	90507688	90509005	2	-2.6743
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	13	90509238	102347913	7240	-0.0101
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	13	102348705	102349034	2	-3.4895
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	13	102350881	114987458	7674	-0.005
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	14	20501368	37285356	8623	0.0039
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	14	37287221	37287604	2	-6.3277
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	14	37291105	105988038	37985	0.0028
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	15	23687685	79866884	29677	0.0031
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	15	79866993	79867842	4	2.6689
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	15	79873204	92088994	6500	0.0045
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	15	92089218	92094729	2	-3.4057
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	15	92096925	92444794	239	0.0051
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	15	92445582	92445969	3	-2.8495
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	15	92446264	93645826	983	-0.0076
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	15	93647825	93649439	2	-5.6977
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	15	93649744	98248481	2540	0.0105
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	15	98248523	98248738	2	-4.4831
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	15	98250499	101884307	1861	0.0105
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	16	653459	89379936	38181	-0.0035
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	17	987221	75218008	32563	0.0054
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	17	75218066	75220287	2	-6.2696
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	17	75225565	80917016	2033	-0.0124
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	18	329586	54744845	28761	7e-04
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	18	54745406	54746156	2	-6.6087
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	18	54746218	77109240	11507	-0.0066
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	19	284018	58479811	22042	0.0088
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	19	58479844	58483709	3	-3.454
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	19	58485146	58572959	39	-0.052
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	19	58573120	58575800	4	-1.3049
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	19	58576944	58878226	168	-0.0156
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	20	455764	44916973	24022	0.0041
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	20	44921148	44921199	2	-5.8659
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	20	44922185	62219837	10853	-0.0015
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	21	15347621	16364156	604	0.02
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	21	16364922	16368253	2	-5.5012
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	21	16368557	37351241	12780	-3e-04
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	21	37351306	37353391	3	-3.7834
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	21	37353440	38017323	319	0.0035
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	21	38020187	38020306	2	-3.7457
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	21	38020997	39180162	663	-0.0126
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	21	39180652	39188377	11	-1.1813
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	21	39188606	40380249	961	0.0019
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	21	40380823	40382384	3	-3.3376
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	21	40382779	47678295	4031	-0.0099
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	22	17423930	49331012	15682	0.0095
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	X	3157107	12182053	2762	0.0164
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	X	12185882	12186030	2	-5.1382
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	X	12186598	133457889	49459	0.0105
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	X	133459908	133464863	4	-2.9462
SHUNT_p_TCGA_sigwga_Affx_Sty_GenomeWideSNP_6_G05_228766	X	133464910	154905589	8927	0.016
