Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	1	3218610	31291738	14725	0.0512
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	1	31292608	31352715	55	0.5884
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	1	31354077	236124330	106862	0.0713
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	1	236124585	236229813	80	0.3896
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	1	236231383	247813706	7369	0.073
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	2	484222	42031338	24424	0.0172
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	2	42039201	42082832	79	-0.5626
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	2	42088147	55091029	7486	0.0133
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	2	55091223	55091793	3	-1.6073
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	2	55094548	213248318	81455	0.0452
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	2	213248822	213249244	2	-2.0686
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	2	213253526	226510259	8449	0.0518
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	2	226510293	226512214	2	-1.5833
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	2	226514462	242476062	9293	0.0607
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	3	2212571	85338354	48513	0.0685
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	3	85345619	85436040	42	0.5179
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	3	85439614	174049405	45797	0.0717
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	3	174050915	174051038	2	-2.454
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	3	174052729	197538677	11988	0.0743
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	4	1053934	5116247	1835	-0.0051
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	4	5116291	5116440	2	-2.1729
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	4	5118169	183014495	98392	0.0121
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	4	183014878	183016944	2	-2.4539
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	4	183021079	188763651	2449	0.0115
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	5	914233	4403959	2184	0.3966
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	5	4404499	4406997	5	-0.2228
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	5	4407065	4662521	204	0.3592
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	5	4664457	75458711	37644	0.0517
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	5	75469007	75469034	2	2.9755
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	5	75474244	180360469	60427	0.0669
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	6	1014281	18729008	12442	0.1043
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	6	18731778	19095892	293	1.2923
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	6	19106260	19386089	185	0.1208
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	6	19386147	19924455	397	1.2848
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	6	19926538	20579123	468	2.0375
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	6	20580196	20987000	272	1.6412
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	6	20993426	21742607	460	1.3254
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	6	21745402	22942213	956	0.1228
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	6	22944967	23325930	268	-0.176
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	6	23329869	23382085	35	1.3229
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	6	23385044	23736331	275	0.0863
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	6	23755124	25420992	1139	1.2738
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	6	25422353	25423307	3	0.2713
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	6	25424003	25763557	57	1.323
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	6	25764192	26005461	169	-0.2103
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	6	26008260	64885338	17680	0.0946
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	6	64885858	64887700	2	1.9718
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	6	64887924	129796534	36481	-0.0675
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	6	129796620	166901041	23472	-0.5186
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	6	166903347	166903750	2	-3.04
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	6	166903884	170903919	1305	-0.531
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	7	705284	24035127	12191	0.4887
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	7	24039878	24040383	2	2.2754
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	7	24040817	51706830	17935	0.478
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	7	51708116	51710844	2	-1.0263
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	7	51710957	99827235	20591	0.4712
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	7	99829112	99851936	6	1.0252
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	7	99852751	105889261	2913	0.4566
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	7	105889906	105890298	2	-1.3827
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	7	105900235	158385118	27697	0.4833
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	8	617667	145232496	81500	-0.0117
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	9	789932	140938752	67998	0.0692
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	10	415240	30088950	20449	-0.5982
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	10	30089169	30090778	6	-3.6877
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	10	30090864	135225087	59946	-0.5776
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	11	456120	60819421	33213	-0.1856
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	11	60819696	60819711	2	-2.9838
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	11	60821446	76548190	6911	-0.2105
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	11	76548208	76549212	2	-2.3321
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	11	76550942	78723723	1228	-0.219
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	11	78725742	78744664	21	0.262
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	11	78745196	78750374	5	0.7605
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	11	78753899	134142530	35756	-0.1841
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	12	889902	67786770	35530	0.023
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	12	67791569	67852467	62	2.3137
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	12	67852873	68341045	345	2.8865
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	12	68343540	68610335	227	2.5416
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	12	68615200	68615587	5	-0.5035
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	12	68616274	68983036	288	2.4589
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	12	68983220	68983840	3	-0.3671
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	12	68985205	69022440	19	2.5938
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	12	69022720	69415373	263	3.2168
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	12	69417573	73785077	2561	0.0293
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	12	73787836	73818508	10	-0.6608
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	12	73823088	133161346	34589	0.023
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	13	19450806	39467391	12559	-0.1801
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	13	39467496	114987458	43885	-0.5479
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	14	20501368	105988038	49429	0.0553
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	15	23687685	61408860	20837	0.0225
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	15	61408871	61409078	2	-1.7882
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	15	61411090	66411064	3102	0.0176
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	15	66411268	66525877	97	0.4214
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	15	66526171	101884307	20459	0.0227
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	16	653459	89379936	40772	0.0814
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	17	987221	7283295	3010	-0.2272
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	17	7285104	7285295	2	-2.0231
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	17	7285831	8619272	632	-0.227
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	17	8620450	8620648	3	-2.3671
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	17	8622190	80917016	33307	-0.0725
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	18	329586	14366663	8147	0.0872
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	18	14368811	14372350	3	-1.3055
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	18	14379514	77109240	34499	0.0865
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	19	284018	5670558	1390	0.3846
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	19	5671821	7304492	637	-0.0071
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	19	7309687	7344986	5	0.7505
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	19	7397015	7703211	115	-0.0304
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	19	7703696	36563749	12456	0.4296
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	19	36564758	36570396	4	1.7014
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	19	36572564	42458533	2731	0.4165
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	19	42469334	47842475	2093	0.0338
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	19	47847661	48066597	113	-0.5623
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	19	48072489	48771283	423	0.0343
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	19	48775374	51178892	738	-0.5555
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	19	51179897	51728641	239	0.068
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	19	51729594	52263087	380	-0.5994
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	19	52270087	52692296	50	0.0491
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	19	52695980	54536604	512	-0.5506
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	19	54537079	54948465	110	0.0169
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	19	54949767	58878226	1944	0.4273
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	20	455764	55946368	33224	0.0767
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	20	55949635	56065843	73	0.448
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	20	56066176	62219837	3961	0.0936
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	21	15347621	39788911	15663	0.0881
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	21	39792441	39792747	2	-2.127
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	21	39793639	47678774	4907	0.0827
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	22	17423930	24079593	964	0.0148
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	22	24080163	24178279	31	0.3715
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	22	24182325	49331012	15934	0.0247
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	X	3157107	38114374	15372	1e-04
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	X	38115242	38115485	2	-4.1296
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	X	38116722	45730878	3666	-0.0076
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	X	45734351	45734847	2	-3.2516
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	X	45735427	46447344	332	0.0193
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	X	46450026	46460899	4	-2.3823
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	X	46461536	65420594	5475	-0.0084
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	X	65420609	65424288	2	-2.6089
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	X	65424541	78986956	4895	-0.0068
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	X	78987106	78987207	2	-3.48
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	X	79000659	116936672	16477	-0.0047
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	X	116937071	116937624	2	-3.4281
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	X	116937928	122284926	2662	4e-04
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	X	122286738	122286754	2	-2.5912
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	X	122287115	122289266	13	0.0724
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	X	122289321	122289799	3	-3.2556
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	X	122292002	132151060	4514	-0.0094
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	X	132152621	132155157	3	-3.2892
COTES_p_TCGAaffxB8_9a_S_GenomeWideSNP_6_A09_292912	X	132155597	154905589	9906	-0.0064
