Parameters:
Genes:	NF1
Diseases:	BLCA	LGG	LUAD	PCPG	SKCM	STAD
Alternative Genes:	None
Alternative Diseases:	Auto
Number of Features:	134
Drop Gene:	True
Copy Number:	False
Alphas:	0.1	0.13	0.15	0.2	0.3
L1_ratios:	0.15	0.155	0.16	0.2	0.25
Hypermutated Removed:	True

Results:
Optimal Alpha:	0.1
Optimal L1:	0.15
Coefficients:	feature_comparison/NF1/tybalt_twohidden/classifier_coefficients.tsv
Training AUROC:	0.722739340836
Testing AUROC:	0.682517482517
Cross Validation AUROC	0.635934548056
Training AUPR:	0.15655810295
Testing AUPR:	0.160479696356
Cross Validation AUPR:	0.109086385159
Disease specific performance:
	BLCA	Training AUROC:	0.733216783217	Testing AUROC:	0.71875	Cross Validation AUROC:	0.653496503497
	SKCM	Training AUROC:	0.467676767677	Testing AUROC:	0.0	Cross Validation AUROC:	0.317171717172
	LGG	Training AUROC:	0.770142180095	Testing AUROC:	0.81914893617	Cross Validation AUROC:	0.708382701422
	LUAD	Training AUROC:	0.668778801843	Testing AUROC:	0.803921568627	Cross Validation AUROC:	0.548387096774
	PCPG	Training AUROC:	0.70645994832	Testing AUROC:	0.571428571429	Cross Validation AUROC:	0.650645994832
	STAD	Training AUROC:	0.651600753296	Testing AUROC:	0.0	Cross Validation AUROC:	0.372881355932
	BLCA	Training AUPR:	0.17495247773	Testing AUPR:	0.107536764706	Cross Validation AUPR:	0.100743617078
	SKCM	Training AUPR:	0.0392636800371	Testing AUPR:	0.0263157894737	Cross Validation AUPR:	0.0247486691659
	LGG	Training AUPR:	0.210342811943	Testing AUPR:	0.574210146579	Cross Validation AUPR:	0.141973675484
	LUAD	Training AUPR:	0.14594541753	Testing AUPR:	0.168498168498	Cross Validation AUPR:	0.107910414293
	PCPG	Training AUPR:	0.163329169905	Testing AUPR:	0.128472222222	Cross Validation AUPR:	0.132801981115
	STAD	Training AUPR:	0.0547496823729	Testing AUPR:	0.0238095238095	Cross Validation AUPR:	0.0241178268504
