Parameters:
Genes:	NF1
Diseases:	BLCA	LGG	LUAD	PCPG	SKCM	STAD
Alternative Genes:	None
Alternative Diseases:	Auto
Number of Features:	134
Drop Gene:	True
Copy Number:	False
Alphas:	0.1	0.13	0.15	0.2	0.3
L1_ratios:	0.15	0.155	0.16	0.2	0.25
Hypermutated Removed:	True

Results:
Optimal Alpha:	0.13
Optimal L1:	0.15
Coefficients:	feature_comparison/NF1/tybalt_twohidden300/classifier_coefficients.tsv
Training AUROC:	0.695323336869
Testing AUROC:	0.732400932401
Cross Validation AUROC	0.603428255807
Training AUPR:	0.147015428989
Testing AUPR:	0.177043373339
Cross Validation AUPR:	0.0988679824219
Disease specific performance:
	LGG	Training AUROC:	0.728672985782	Testing AUROC:	0.781914893617	Cross Validation AUROC:	0.657360781991
	STAD	Training AUROC:	0.677966101695	Testing AUROC:	0.85	Cross Validation AUROC:	0.317325800377
	BLCA	Training AUROC:	0.661888111888	Testing AUROC:	0.96875	Cross Validation AUROC:	0.481118881119
	SKCM	Training AUROC:	0.510101010101	Testing AUROC:	0.833333333333	Cross Validation AUROC:	0.343434343434
	PCPG	Training AUROC:	0.758656330749	Testing AUROC:	0.464285714286	Cross Validation AUROC:	0.650129198966
	LUAD	Training AUROC:	0.642396313364	Testing AUROC:	0.607843137255	Cross Validation AUROC:	0.517741935484
	LGG	Training AUPR:	0.19241601449	Testing AUPR:	0.233053221289	Cross Validation AUPR:	0.117202678596
	STAD	Training AUPR:	0.0638876945557	Testing AUPR:	0.125	Cross Validation AUPR:	0.021893234356
	BLCA	Training AUPR:	0.112359033774	Testing AUPR:	0.708333333333	Cross Validation AUPR:	0.057830936899
	SKCM	Training AUPR:	0.0555500204757	Testing AUPR:	0.125	Cross Validation AUPR:	0.0487159367076
	PCPG	Training AUPR:	0.191982481585	Testing AUPR:	0.106168831169	Cross Validation AUPR:	0.1339638561
	LUAD	Training AUPR:	0.137200871215	Testing AUPR:	0.0957936507937	Cross Validation AUPR:	0.137708465958
