Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	TVarRatio	NTotCov	NVarCov	NVarRatio	Tissues	dbSNPPopFreq	Validation_Failure	TTotCovVal	TVarCovVal	TVarRatioVal	NTotCovVal	NVarCovVal	NVarRatioVal	T_CountA	T_CountT	T_CountC	T_CountG	N_CountA	N_CountT	N_CountC	N_CountG
CHD6	84181	NCI	37	20	40079643	40079643	+	Missense_Mutation	SNP	G	G	A	novel	.	TARGET-50-CAAAAP-01A-01D	TARGET-50-CAAAAP-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-CAAAAP-10A-01D_hg19.bam	Illumina	.	CHD6	NM_032221	exon23	c.C3626T	p.P1209L	ACCACCTCG[G/A]GGTTGCAGGT	.	78	41	0.526	82	0	0.000	.	.	Success	562	237	0.421708185	671	1	0.001490313	237	0	0	0	1	0	0	0
NFATC2	4773	NCI	37	20	50048618	50048618	+	Missense_Mutation	SNP	G	G	A	novel	.	TARGET-50-CAAAAP-01A-01D	TARGET-50-CAAAAP-10A-01D	G	A	G	A	G	G	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-CAAAAP-10A-01D_hg19.bam	Illumina	.	NFATC2	NM_012340	exon9	c.C2708T	p.T903I	TCCAAGTAG[G/A]TCTGGTCCAA	.	166	66	0.398	163	1	0.006	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
C3orf43	255798	NCI	37	3	196235135	196235135	+	Missense_Mutation	SNP	G	G	A	novel	.	TARGET-50-CAAAAP-01A-01D	TARGET-50-CAAAAP-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-CAAAAP-10A-01D_hg19.bam	Illumina	.	C3orf43	NM_001077657	exon3	c.C268T	p.R90C	CAAGCACAC[G/A]AGTATGCAAG	.	115	54	0.470	67	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
ZKSCAN4	387032	NCI	37	6	28217496	28217496	+	Missense_Mutation	SNP	T	T	A	novel	.	TARGET-50-CAAAAP-01A-01D	TARGET-50-CAAAAP-10A-01D	T	T	T	A	T	T	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-CAAAAP-10A-01D_hg19.bam	Illumina	.	ZKSCAN4	NM_019110	exon2	c.A540T	p.E180D	TCCCAGAGA[T/A]TCATGCTTGA	.	212	99	0.467	210	0	0.000	.	.	Success	514	224	0.435797665	808	3	0.003712871	224	0	3	3	3	0	3	0
CYLC1	1538	NCI	37	X	83127967	83127967	+	Missense_Mutation	SNP	T	T	A	novel	.	TARGET-50-CAAAAR-01A-01D	TARGET-50-CAAAAR-10A-01D	T	T	T	A	T	T	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-CAAAAR-10A-01D_hg19.bam	Illumina	.	CYLC1	NM_021118	exon4	c.T251A	p.I84N	TCAGAAAAA[T/A]TTTGCAATGG	.	82	31	0.378	149	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
CSMD2	114784	NCI	37	1	34100856	34100856	+	Nonsense_Mutation	SNP	C	C	A	novel	.	TARGET-50-PADXAY-01A-01D	TARGET-50-PADXAY-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PADXAY-10A-01D_hg19.bam	Illumina	.	CSMD2	NM_052896	exon31	c.G4924T	p.G1642X	AGATCTGTC[C/A]ACTGGTGTAG	.	232	106	0.457	135	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
DNM3	26052	NCI	37	1	171956900	171956900	+	Missense_Mutation	SNP	G	G	A	novel	.	TARGET-50-PADXAY-01A-01D	TARGET-50-PADXAY-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PADXAY-10A-01D_hg19.bam	Illumina	.	DNM3	NM_015569	exon3	c.G340A	p.G114S	ATGAATAAA[G/A]GCATTTCCTC	.	269	114	0.424	250	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
TP53	7157	NCI	37	17	7574002	7574002	+	Missense_Mutation	SNP	C	C	G	novel	.	TARGET-50-PADXAY-01A-01D	TARGET-50-PADXAY-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PADXAY-10A-01D_hg19.bam	Illumina	TP53,NS,carcinoma	TP53	NM_000546	exon10	c.G1025C	p.R342P	TTCAGCTCT[C/G]GGAACATCTC	.	64	63	0.984	34	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
ZNF750	79755	NCI	37	17	80790297	80790297	+	Missense_Mutation	SNP	G	G	C	novel	.	TARGET-50-PADXAY-01A-01D	TARGET-50-PADXAY-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PADXAY-10A-01D_hg19.bam	Illumina	.	ZNF750	NM_024702	exon2	c.C34G	p.P12A	TGTAATGTG[G/C]CTTTTTTGGC	.	203	91	0.448	153	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MLL3	58508	NCI	37	7	151849993	151849993	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PADXAY-01A-01D	TARGET-50-PADXAY-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PADXAY-10A-01D_hg19.bam	Illumina	.	MLL3	NM_170606	exon49	c.G12323A	p.R4108Q	TTAGGGATT[C/T]GGACGTGAAG	.	202	155	0.767	36	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
ARID1A	8289	NCI	37	1	27100387	27100387	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PADZUB-01A-01D	TARGET-50-PADZUB-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PADZUB-10A-01D_hg19.bam	Illumina	.	ARID1A	NM_006015	exon17	c.C4099T	p.Q1367X	CAGCAACAG[C/T]AGGTGAGGAG	.	50	26	0.520	44	0	0.000	.	.	Success	749	376	0.50200267	582	0	0	1	376	0	0	0	0	0	0
ARRB1	408	NCI	37	11	74978738	74978738	+	Missense_Mutation	SNP	T	T	G	novel	.	TARGET-50-PADZUB-01A-01D	TARGET-50-PADZUB-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PADZUB-10A-01D_hg19.bam	Illumina	.	ARRB1	NM_020251	exon14	c.A1079C	p.N360T	GGCGTCTCG[T/G]TCTCTGGAAC	.	185	90	0.486	138	0	0.000	.	.	Success	359	177	0.493036212	552	0	0	0	0	1	177	0	0	1	0
DMXL1	1657	NCI	37	5	118506298	118506298	+	Missense_Mutation	SNP	G	G	C	rs144486951	.	TARGET-50-PADZUB-01A-01D	TARGET-50-PADZUB-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PADZUB-10A-01D_hg19.bam	Illumina	.	DMXL1	NM_005509	exon24	c.G5812C	p.G1938R	TCTTCAGAG[G/C]GTTCCTCAGA	.	61	11	0.180	67	0	0.000	.	.	Success	372	107	0.287634409	690	0	0	0	1	107	0	0	0	0	0
NCAPG2	54892	NCI	37	7	158457427	158457427	+	Missense_Mutation	SNP	G	G	T	novel	.	TARGET-50-PADZUB-01A-01D	TARGET-50-PADZUB-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PADZUB-10A-01D_hg19.bam	Illumina	.	NCAPG2	NM_017760	exon14	c.C1495A	p.P499T	GCTCCATGG[G/T]ACATATTTTC	.	41	34	0.829	19	0	0.000	.	.	Success	333	208	0.624624625	283	0	0	0	208	0	0	0	0	0	0
FAM73A	374986	NCI	37	1	78279472	78279472	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PAJMJT-01A-01D	TARGET-50-PAJMJT-10A-01D	C	T	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJMJT-10A-01D_hg19.bam	Illumina	.	FAM73A	NM_198549	exon6	c.C691T	p.R231C	CTGACCTTT[C/T]GCAATAGACA	.	197	128	0.650	203	1	0.005	.	.	Success	802	375	0.467581047	572	0	0	0	375	0	0	0	0	0	0
CD9	928	NCI	37	12	6345410	6345410	+	Missense_Mutation	SNP	G	G	A	novel	.	TARGET-50-PAJMJT-01A-01D	TARGET-50-PAJMJT-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJMJT-10A-01D_hg19.bam	Illumina	.	CD9	NM_001769	exon7	c.G590A	p.G197D	ACATCATCG[G/A]CGCAGTGGGC	.	44	5	0.114	50	0	0.000	.	.	Success	536	69	0.128731343	951	0	0	69	0	0	0	0	0	0	0
SIGLEC12	89858	NCI	37	19	52004795	52004796	+	Frame_Shift_Ins	INS	-	-	T	novel	.	TARGET-50-PAJMJT-01A-01D	TARGET-50-PAJMJT-10A-01D	-	-	T	T	T	T	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJMJT-10A-01D_hg19.bam	Illumina	.	SIGLEC12	NM_053003	exon1	c.193_194insA	p.R65fs	.	.	24	22	0.917	30	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SMC4	10051	NCI	37	3	160143952	160143952	+	Missense_Mutation	SNP	A	A	G	novel	.	TARGET-50-PAJMJT-01A-01D	TARGET-50-PAJMJT-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJMJT-10A-01D_hg19.bam	Illumina	.	SMC4	NM_001002800	exon17	c.A2569G	p.K857E	AAAAAGCAG[A/G]AATTGCTAGA	.	128	67	0.523	111	0	0.000	.	.	Success	335	179	0.534328358	511	0	0	0	0	0	179	0	0	0	0
DNAH5	1767	NCI	37	5	13753448	13753448	+	Missense_Mutation	SNP	T	T	C	novel	.	TARGET-50-PAJMJT-01A-01D	TARGET-50-PAJMJT-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJMJT-10A-01D_hg19.bam	Illumina	.	DNAH5	NM_001369	exon63	c.A10766G	p.Q3589R	ATTCCATTT[T/C]GAATGGACAA	.	158	60	0.380	130	0	0.000	.	.	Success	707	366	0.517680339	537	1	0.001862197	0	0	366	1	0	0	1	0
RNF20	56254	NCI	37	9	104302844	104302844	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PAJMJT-01A-01D	TARGET-50-PAJMJT-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJMJT-10A-01D_hg19.bam	Illumina	.	RNF20	NM_019592	exon4	c.C370T	p.R124X	CTCACAGAA[C/T]GAAAAGCCCT	.	75	53	0.707	80	0	0.000	.	.	Success	309	167	0.540453074	295	0	0	0	167	0	0	0	0	0	0
NEFH	4744	NCI	37	22	29885567	29885568	+	In_Frame_Ins	INS	-	-	AAGTCCCCTGAGAAGGCC	novel	.	TARGET-50-PAJMKN-01A-01D	TARGET-50-PAJMKN-10A-01D	-	-	-	AAGTCCCCTGAGAAGGCC	-	AAGTCCCCTGAGAAGGCC	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJMKN-10A-01D_hg19.bam	Illumina	.	NEFH	NM_021076	exon4	c.1938_1939insAAGTCCCCTGAGAAGGCC	p.A646delinsAKSPEKA	.	.	95	45	0.474	72	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
CTBP2	1488	NCI	37	10	126716310	126716310	+	Missense_Mutation	SNP	G	G	A	novel	.	TARGET-50-PAJMLZ-01A-01D	TARGET-50-PAJMLZ-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJMLZ-10A-01D_hg19.bam	Illumina	.	CTBP2	NM_022802	exon1	c.C19T	p.H7Y	TATTTATAT[G/A]CCTGCTGGGA	.	21	8	0.381	25	0	0.000	.	.	Success	1095	546	0.498630137	1026	0	0	546	0	0	0	0	0	0	0
MMP27	64066	NCI	37	11	102564716	102564716	+	Missense_Mutation	SNP	G	G	A	novel	.	TARGET-50-PAJMLZ-01A-01D	TARGET-50-PAJMLZ-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJMLZ-10A-01D_hg19.bam	Illumina	.	MMP27	NM_022122	exon8	c.C1114T	p.R372C	TCTTCACAC[G/A]TCCTGGAAAA	.	330	145	0.439	225	0	0.000	.	.	Success	440	170	0.386363636	633	3	0.004739336	170	0	0	0	3	0	0	0
FAM123B	139285	NCI	37	X	63412670	63412670	+	Frame_Shift_Del	DEL	T	T	-	novel	.	TARGET-50-PAJMLZ-01A-01D	TARGET-50-PAJMLZ-10A-01D	T	-	T	-	T	T	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJMLZ-10A-01D_hg19.bam	Illumina	.	FAM123B	NM_152424	exon2	c.497delA	p.K166fs	.	.	32	27	0.844	29	1	0.034	.	.	Success	582	551	0.946735395	693	28	0.04040404	.	.	.	.	.	.	.	.
LRCH2	57631	NCI	37	X	114384587	114384587	+	Missense_Mutation	SNP	G	G	T	novel	.	TARGET-50-PAJMLZ-01A-01D	TARGET-50-PAJMLZ-10A-01D	G	T	T	T	G	G	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJMLZ-10A-01D_hg19.bam	Illumina	.	LRCH2	NM_001243963	exon13	c.C1576A	p.Q526K	TTCTTACCT[G/T]CCAGGTGAGG	.	166	141	0.849	38	1	0.026	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
DROSHA	29102	NCI	37	5	31421465	31421465	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PAJMSE-01A-01D	TARGET-50-PAJMSE-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJMSE-10A-01D_hg19.bam	Illumina	.	DROSHA	NM_013235	exon29	c.G3439A	p.E1147K	CTAGGAATT[C/T]CATTCTCTGA	.	317	146	0.461	296	0	0.000	.	.	Success	415	216	0.520481928	384	0	0	0	216	0	0	0	0	0	0
PCDH15	65217	NCI	37	10	55581956	55581956	+	Missense_Mutation	SNP	T	T	A	novel	.	TARGET-50-PAJMVC-01A-01D	TARGET-50-PAJMVC-10A-01D	T	T	A	A	T	T	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJMVC-10A-01D_hg19.bam	Illumina	.	PCDH15	NM_001142767	exon31	c.A5410T	p.T1804S	TAACACCTG[T/A]TATACAGACA	.	555	294	0.530	293	0	0.000	.	.	Success	716	611	0.853351955	1276	0	0	611	0	1	1	0	0	5	0
OR4C46	119749	NCI	37	11	51516054	51516054	+	Missense_Mutation	SNP	G	G	T	novel	.	TARGET-50-PAJMVC-01A-01D	TARGET-50-PAJMVC-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJMVC-10A-01D_hg19.bam	Illumina	.	OR4C46	NM_001004703	exon1	c.G773T	p.R258I	TGTACATGA[G/T]ACCTGCAGCT	.	316	154	0.487	232	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
KRAS	3845	NCI	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	rs121913529	.	TARGET-50-PAJMVC-01A-01D	TARGET-50-PAJMVC-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJMVC-10A-01D_hg19.bam	Illumina	KRAS,NS,haematopoietic_neoplasm	KRAS	NM_004985	exon2	c.G35A	p.G12D	CCTACGCCA[C/T]CAGCTCCAAC	.	251	119	0.474	218	0	0.000	.	.	Success	626	309	0.493610224	551	2	0.003629764	0	309	0	0	0	2	0	0
NOS1	4842	NCI	37	12	117710227	117710227	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PAJMVC-01A-01D	TARGET-50-PAJMVC-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJMVC-10A-01D_hg19.bam	Illumina	.	NOS1	NM_000620	exon10	c.G1802A	p.R601H	CAGTAGTCG[C/T]GGACACCAAT	.	30	7	0.233	17	0	0.000	.	.	Success	1274	434	0.340659341	1107	1	0.000903342	0	434	0	1	0	1	0	0
SRL	6345	NCI	37	16	4242450	4242450	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PAJMVC-01A-01D	TARGET-50-PAJMVC-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJMVC-10A-01D_hg19.bam	Illumina	.	SRL	NM_001098814	exon6	c.G1126A	p.D376N	AGAATTTAT[C/T]GGGATCTTCC	.	71	35	0.493	41	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
CDH8	1006	NCI	37	16	61854904	61854904	+	Missense_Mutation	SNP	C	C	A	novel	.	TARGET-50-PAJMVC-01A-01D	TARGET-50-PAJMVC-10A-01D	C	C	A	A	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJMVC-10A-01D_hg19.bam	Illumina	.	CDH8	NM_001796	exon6	c.G949T	p.D317Y	CATCTCCAT[C/A]GATGATATCA	.	385	186	0.483	175	0	0.000	.	.	Success	215	183	0.851162791	274	0	0	183	0	0	3	0	0	0	0
TP53	7157	NCI	37	17	7574002	7574002	+	Missense_Mutation	SNP	C	C	G	novel	.	TARGET-50-PAJMVC-01A-01D	TARGET-50-PAJMVC-10A-01D	C	C	G	G	C	C	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJMVC-10A-01D_hg19.bam	Illumina	TP53,NS,carcinoma	TP53	NM_000546	exon10	c.G1025C	p.R342P	TTCAGCTCT[C/G]GGAACATCTC	.	34	33	0.971	26	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MYBPC2	4606	NCI	37	19	50949163	50949163	+	Missense_Mutation	SNP	G	G	C	novel	.	TARGET-50-PAJMVC-01A-01D	TARGET-50-PAJMVC-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJMVC-10A-01D_hg19.bam	Illumina	.	MYBPC2	NM_004533	exon12	c.G1160C	p.R387P	AACTGACTC[G/C]GGAGGATTCC	.	138	37	0.268	34	0	0.000	.	.	Success	1208	567	0.469370861	928	0	0	0	1	567	0	0	0	0	0
NLRP12	91662	NCI	37	19	54314501	54314501	+	Missense_Mutation	SNP	G	G	A	rs142971951	.	TARGET-50-PAJMVC-01A-01D	TARGET-50-PAJMVC-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJMVC-10A-01D_hg19.bam	Illumina	.	NLRP12	NM_144687	exon3	c.C412T	p.R138W	CCATGAGCC[G/A]GAATTTCCTG	.	36	21	0.583	17	0	0.000	.	.	Success	848	804	0.948113208	1152	2	0.001736111	804	2	2	0	2	0	0	0
BRE	9577	NCI	37	2	28268646	28268646	+	Missense_Mutation	SNP	A	A	G	novel	.	TARGET-50-PAJMVC-01A-01D	TARGET-50-PAJMVC-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJMVC-10A-01D_hg19.bam	Illumina	.	BRE	NM_199193	exon7	c.A550G	p.I184V	TTCAGCAAT[A/G]TCCCCACATA	.	212	92	0.434	182	0	0.000	.	.	Success	765	371	0.48496732	1074	0	0	0	1	0	371	0	0	0	0
FASTKD1	79675	NCI	37	2	170387932	170387932	+	Missense_Mutation	SNP	G	G	C	novel	.	TARGET-50-PAJMVC-01A-01D	TARGET-50-PAJMVC-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJMVC-10A-01D_hg19.bam	Illumina	.	FASTKD1	NM_024622	exon13	c.C2257G	p.Q753E	CTGGTAGTT[G/C]TCCCAATGCT	.	393	181	0.461	343	0	0.000	.	.	Success	292	92	0.315068493	235	0	0	0	0	92	0	0	0	0	0
CSTF1	1477	NCI	37	20	54972310	54972310	+	Missense_Mutation	SNP	G	G	A	novel	.	TARGET-50-PAJMVC-01A-01D	TARGET-50-PAJMVC-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJMVC-10A-01D_hg19.bam	Illumina	.	CSTF1	NM_001033521	exon3	c.G217A	p.D73N	GGTCGTTCA[G/A]ATACTGTTGC	.	236	108	0.458	142	0	0.000	.	.	Success	447	406	0.908277405	605	0	0	406	0	0	0	0	0	0	0
ABHD6	57406	NCI	37	3	58260393	58260393	+	Missense_Mutation	SNP	T	T	A	novel	.	TARGET-50-PAJMVC-01A-01D	TARGET-50-PAJMVC-10A-01D	T	T	T	A	T	T	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJMVC-10A-01D_hg19.bam	Illumina	.	ABHD6	NM_020676	exon6	c.T532A	p.Y178N	GGCCTGCAG[T/A]ACTCAACTGA	.	111	18	0.162	93	0	0.000	.	.	Success	787	130	0.165184244	1185	0	0	130	0	3	0	0	0	2	0
PGK2	5232	NCI	37	6	49753771	49753771	+	Missense_Mutation	SNP	G	G	A	novel	.	TARGET-50-PAJMVC-01A-01D	TARGET-50-PAJMVC-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJMVC-10A-01D_hg19.bam	Illumina	.	PGK2	NM_138733	exon1	c.C1130T	p.A377V	CAGCAAGTA[G/A]CAGTGTCTCC	.	117	19	0.162	79	0	0.000	.	.	Success	849	133	0.156654888	1352	1	0.000739645	133	0	1	0	1	0	0	0
COL19A1	1310	NCI	37	6	70646711	70646711	+	Nonsense_Mutation	SNP	C	C	A	novel	.	TARGET-50-PAJMVC-01A-01D	TARGET-50-PAJMVC-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJMVC-10A-01D_hg19.bam	Illumina	COL19A1,NS,carcinoma	COL19A1	NM_001858	exon8	c.C782A	p.S261X	ATATTGCAT[C/A]ATCATGGGTA	.	351	80	0.228	187	0	0.000	.	.	Success	1478	1139	0.770635995	732	0	0	1139	1	0	2	0	0	0	0
KRAS	3845	NCI	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	rs121913529	.	TARGET-50-PAJMVC-01A-01D	TARGET-50-PAJMVC-11A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJMVC-11A-01D_hg19.bam	Illumina	KRAS,NS,haematopoietic_neoplasm	KRAS	NM_004985	exon2	c.G35A	p.G12D	CCTACGCCA[C/T]CAGCTCCAAC	.	251	119	0.474	241	0	0.000	.	.	Success	626	309	0.493610224	551	2	0.003629764	0	309	0	0	0	2	0	0
ABCC11	85320	NCI	37	16	48201195	48201195	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TARGET-50-PAJNGH-01A-01D	TARGET-50-PAJNGH-10A-01D	G	T	G	T	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNGH-10A-01D_hg19.bam	Illumina	.	ABCC11	NM_145186	exon29	c.C4025A	p.S1342X	TATCTCAGT[G/T]AAGAAGTGGC	.	42	13	0.310	92	1	0.011	.	.	Success	648	272	0.419753086	1733	7	0.004039238	0	272	0	0	0	7	0	0
MBP	4155	NCI	37	18	74696751	74696751	+	Missense_Mutation	SNP	G	G	T	novel	.	TARGET-50-PAJNGH-01A-01D	TARGET-50-PAJNGH-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNGH-10A-01D_hg19.bam	Illumina	.	MBP	NM_002385	exon5	c.C496A	p.L166I	TTTTGGAAA[G/T]CGTGCCCTGG	.	57	6	0.105	167	0	0.000	.	.	Success	532	56	0.105263158	987	3	0.003039514	0	56	0	0	3	3	0	0
PWP2	5822	NCI	37	21	45540258	45540258	+	Missense_Mutation	SNP	C	C	A	novel	.	TARGET-50-PAJNGH-01A-01D	TARGET-50-PAJNGH-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNGH-10A-01D_hg19.bam	Illumina	.	PWP2	NM_005049	exon11	c.C1218A	p.F406L	CAGCGGCTT[C/A]TGCTTCGTCA	.	18	5	0.278	49	0	0.000	.	.	Success	519	69	0.132947977	823	1	0.001215067	69	0	0	0	1	1	0	0
MANF	7873	NCI	37	3	51426347	51426347	+	Missense_Mutation	SNP	G	G	C	novel	.	TARGET-50-PAJNGH-01A-01D	TARGET-50-PAJNGH-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNGH-10A-01D_hg19.bam	Illumina	.	MANF	NM_006010	exon4	c.G376C	p.D126H	AAGCAGATC[G/C]ACCTGAGCAC	.	81	16	0.198	154	0	0.000	.	.	Success	409	54	0.13202934	594	3	0.005050505	0	0	54	0	0	0	3	0
ADCY5	111	NCI	37	3	123033118	123033118	+	Missense_Mutation	SNP	C	C	A	novel	.	TARGET-50-PAJNGH-01A-01D	TARGET-50-PAJNGH-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNGH-10A-01D_hg19.bam	Illumina	.	ADCY5	NM_183357	exon12	c.G2406T	p.L802F	AAACACCAC[C/A]AAGGTCAGCA	.	172	83	0.483	200	0	0.000	.	.	Success	424	182	0.429245283	1055	15	0.014218009	182	0	0	0	15	0	0	0
NRD1	4898	NCI	37	1	52303198	52303198	+	Missense_Mutation	SNP	T	T	A	novel	.	TARGET-50-PAJNLT-01A-01D	TARGET-50-PAJNLT-10A-01D	T	T	T	A	T	T	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJNLT-10A-01D_hg19.bam	Illumina	.	NRD1	NM_002525	exon3	c.A725T	p.E242V	TTTCTTGTC[T/A]CGACCAGCAG	.	423	220	0.520	197	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
DSE	29940	NCI	37	6	116747769	116747769	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PAJNLT-01A-01D	TARGET-50-PAJNLT-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJNLT-10A-01D_hg19.bam	Illumina	.	DSE	NM_001080976	exon3	c.C449T	p.P150L	ATGAGGTCC[C/T]GCTTGCTCAC	.	169	70	0.414	52	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
TBP	6908	NCI	37	6	170871013	170871014	+	In_Frame_Ins	INS	-	-	CAG	novel	.	TARGET-50-PAJNLT-01A-01D	TARGET-50-PAJNLT-10A-01D	-	-	CAG	CAG	CAG	CAG	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJNLT-10A-01D_hg19.bam	Illumina	.	TBP	NM_001172085	exon2	c.129_130insCAG	p.Q43delinsQQ	.	.	121	76	0.628	11	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
CNTNAP2	26047	NCI	37	7	146741065	146741065	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PAJNLT-01A-01D	TARGET-50-PAJNLT-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJNLT-10A-01D_hg19.bam	Illumina	.	CNTNAP2	NM_014141	exon4	c.C469T	p.R157C	ATTATTGCC[C/T]GCTATGTGCG	.	597	188	0.315	126	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
CSMD2	114784	NCI	37	1	33999396	33999396	+	Missense_Mutation	SNP	G	G	A	novel	.	TARGET-50-PAJNNR-01A-01D	TARGET-50-PAJNNR-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNNR-10A-01D_hg19.bam	Illumina	.	CSMD2	NM_052896	exon62	c.C9559T	p.P3187S	TGCACTCAC[G/A]GACACAGTCA	.	202	99	0.490	230	0	0.000	.	.	Success	393	184	0.468193384	872	0	0	184	0	0	0	0	0	0	0
RYR2	6262	NCI	37	1	237972249	237972249	+	Missense_Mutation	SNP	G	G	C	novel	.	TARGET-50-PAJNNR-01A-01D	TARGET-50-PAJNNR-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNNR-10A-01D_hg19.bam	Illumina	.	RYR2	NM_001035	exon100	c.G14347C	p.V4783L	CTATACACT[G/C]TGGTGGCATT	.	597	255	0.427	522	0	0.000	.	.	Success	371	174	0.469002695	489	0	0	0	0	174	0	0	0	0	0
NAALAD2	10003	NCI	37	11	89903263	89903263	+	Missense_Mutation	SNP	A	A	G	novel	.	TARGET-50-PAJNNR-01A-01D	TARGET-50-PAJNNR-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNNR-10A-01D_hg19.bam	Illumina	.	NAALAD2	NM_005467	exon13	c.A1369G	p.T457A	GTTGACTGT[A/G]CTCCCCTTCT	.	467	126	0.270	202	0	0.000	.	.	Success	398	146	0.366834171	454	1	0.002202643	0	0	0	146	0	0	0	1
TP53	7157	NCI	37	17	7574002	7574002	+	Missense_Mutation	SNP	C	C	G	novel	.	TARGET-50-PAJNNR-01A-01D	TARGET-50-PAJNNR-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNNR-10A-01D_hg19.bam	Illumina	TP53,NS,carcinoma	TP53	NM_000546	exon10	c.G1025C	p.R342P	TTCAGCTCT[C/G]GGAACATCTC	.	37	33	0.892	92	0	0.000	.	.	Success	978	445	0.455010225	637	0	0	0	0	0	445	0	0	0	0
ACTB	60	NCI	37	7	5567771	5567773	+	In_Frame_Del	DEL	ATG	ATG	-	novel	.	TARGET-50-PAJNNR-01A-01D	TARGET-50-PAJNNR-10A-01D	ATG	ATG	ATG	-	ATG	ATG	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNNR-10A-01D_hg19.bam	Illumina	.	ACTB	NM_001101	exon5	c.846_848del	p.282_283del	.	.	108	40	0.370	123	0	0.000	.	.	Success	559	241	0.431127013	525	0	0	.	.	.	.	.	.	.	.
LRRC4	64101	NCI	37	7	127670451	127670451	+	Missense_Mutation	SNP	G	G	C	novel	.	TARGET-50-PAJNNR-01A-01D	TARGET-50-PAJNNR-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJNNR-10A-01D_hg19.bam	Illumina	.	LRRC4	NM_022143	exon2	c.C243G	p.N81K	CTCCATGAG[G/C]TTGAGGTACC	.	377	166	0.440	731	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
NLGN4X	57502	NCI	37	X	6069063	6069063	+	Missense_Mutation	SNP	A	A	C	novel	.	TARGET-50-PAJNNR-01A-01D	TARGET-50-PAJNNR-10A-01D	A	A	C	C	A	A	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNNR-10A-01D_hg19.bam	Illumina	.	NLGN4X	NM_020742	exon2	c.T445G	p.L149V	AGATGTTTA[A/C]GTAAAGGCAG	.	155	147	0.948	82	0	0.000	.	.	Success	253	242	0.956521739	293	0	0	0	0	242	1	0	0	0	0
DICER1	23405	NCI	37	14	95556982	95556982	+	Nonsense_Mutation	SNP	G	G	C	novel	.	TARGET-50-PAJNRH-01A-01D	TARGET-50-PAJNRH-10A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJNRH-10A-01D_hg19.bam	Illumina	.	DICER1	NM_177438	exon27	c.C5622G	p.Y1874X	CTTCCCGTC[G/C]TAAGTTCTCT	.	605	317	0.524	386	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
DICER1	23405	NCI	37	14	95560464	95560464	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PAJNRH-01A-01D	TARGET-50-PAJNRH-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNRH-10A-01D_hg19.bam	Illumina	DICER1,NS,carcinoma	DICER1	NM_001195573	exon23	c.G5125A	p.D1709N	AAATCGCAT[C/T]TCCCAGGAAT	.	87	41	0.471	72	0	0.000	.	.	Success	420	216	0.514285714	754	0	0	0	216	0	0	0	0	0	0
MTFMT	123263	NCI	37	15	65297191	65297191	+	Splice_site	SNP	C	C	T	novel	.	TARGET-50-PAJNRH-01A-01D	TARGET-50-PAJNRH-10A-01D	C	T	C	T	C	C	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJNRH-10A-01D_hg19.bam	Illumina	.	MTFMT	.	.	.	.	AAAAACATA[C/T]CTTGCAATAA	.	758	319	0.421	581	2	0.003	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
ABCA12	26154	NCI	37	2	215866294	215866294	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PAJNRH-01A-01D	TARGET-50-PAJNRH-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNRH-10A-01D_hg19.bam	Illumina	ABCA12,NS,carcinoma	ABCA12	NM_173076	exon21	c.G2851A	p.E951K	CAAAGAGTT[C/T]GTTGCTTTTG	.	371	167	0.450	292	0	0.000	.	.	Success	561	251	0.44741533	738	0	0	0	251	0	0	0	0	0	0
ASXL1	171023	NCI	37	20	31022288	31022288	+	Nonsense_Mutation	SNP	C	C	A	novel	.	TARGET-50-PAJNRH-01A-01D	TARGET-50-PAJNRH-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNRH-10A-01D_hg19.bam	Illumina	.	ASXL1	NM_015338	exon12	c.C1773A	p.Y591X	GCCCACTTA[C/A]CAGATATGCC	.	34	17	0.500	42	0	0.000	.	.	Success	913	498	0.545454545	416	0	0	498	0	0	0	0	0	0	0
ANKS1B	56899	NCI	37	12	99225838	99225838	+	Missense_Mutation	SNP	G	G	A	novel	.	TARGET-50-PAJNTJ-01A-01D	TARGET-50-PAJNTJ-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNTJ-10A-01D_hg19.bam	Illumina	.	ANKS1B	NM_181670	exon4	c.C533T	p.P178L	GGCTTCTGT[G/A]GGGGATCGTC	.	78	16	0.205	97	0	0.000	.	.	Success	209	15	0.071770335	231	0	0	15	0	0	0	0	0	0	0
NCOA1	8648	NCI	37	2	24930515	24930515	+	Missense_Mutation	SNP	C	C	G	novel	.	TARGET-50-PAJNTJ-01A-01D	TARGET-50-PAJNTJ-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNTJ-10A-01D_hg19.bam	Illumina	.	NCOA1	NM_003743	exon11	c.C2176G	p.Q726E	GGACAGGTA[C/G]AAGGAAACTC	.	147	70	0.476	241	0	0.000	.	.	Success	509	244	0.479371316	450	0	0	2	0	0	244	0	0	0	0
ARHGAP40	343578	NCI	37	20	37255788	37255788	+	Missense_Mutation	SNP	G	G	T	novel	.	TARGET-50-PAJNTJ-01A-01D	TARGET-50-PAJNTJ-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNTJ-10A-01D_hg19.bam	Illumina	.	ARHGAP40	NM_001164431	exon3	c.G485T	p.R162L	TCTATGCTC[G/T]CTCAGTGCGA	.	37	17	0.459	30	0	0.000	.	.	Success	394	183	0.464467005	319	0	0	2	183	0	0	1	0	0	0
RUSC2	9853	NCI	37	9	35558534	35558534	+	Missense_Mutation	SNP	G	G	A	novel	.	TARGET-50-PAJNTJ-01A-01D	TARGET-50-PAJNTJ-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNTJ-10A-01D_hg19.bam	Illumina	.	RUSC2	NM_014806	exon8	c.G3311A	p.R1104H	ATACCATGC[G/A]CTTCAACGCC	.	103	28	0.272	76	0	0.000	.	.	Success	1075	366	0.340465116	955	1	0.00104712	366	0	0	0	1	0	0	0
PHF2	5253	NCI	37	9	96439004	96439005	+	In_Frame_Ins	INS	-	-	CCTGCCTCCACCACA	novel	.	TARGET-50-PAJNTJ-01A-01D	TARGET-50-PAJNTJ-10A-01D	-	-	-	CCTGCCTCCACCACA	-	CCTGCCTCCACCACA	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJNTJ-10A-01D_hg19.bam	Illumina	.	PHF2	NM_005392	exon21	c.2961_2962insCCTGCCTCCACCACA	p.T987delinsTPASTT	.	.	95	34	0.358	33	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
ALG13	79868	NCI	37	X	110987997	110987999	+	In_Frame_Del	DEL	CCT	CCT	-	novel	.	TARGET-50-PAJNTJ-01A-01D	TARGET-50-PAJNTJ-10A-01D	CCT	CCT	CCT	-	CCT	-	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJNTJ-10A-01D_hg19.bam	Illumina	.	ALG13	NM_001257231	exon24	c.2563_2565del	p.855_855del	.	.	21	14	0.667	15	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
ASPM	259266	NCI	37	1	197074093	197074093	+	Missense_Mutation	SNP	T	T	C	novel	.	TARGET-50-PAJNUP-01A-01D	TARGET-50-PAJNUP-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNUP-10A-01D_hg19.bam	Illumina	.	ASPM	NM_018136	exon18	c.A4288G	p.M1430V	TTCTGAACA[T/C]AGATTGGATT	.	305	146	0.479	610	0	0.000	.	.	Success	399	337	0.844611529	660	1	0.001515152	0	0	337	0	0	0	1	0
TP53	7157	NCI	37	17	7577539	7577539	+	Missense_Mutation	SNP	G	G	A	rs121912651	.	TARGET-50-PAJNUP-01A-01D	TARGET-50-PAJNUP-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNUP-10A-01D_hg19.bam	Illumina	TP53,NS,adenocarcinoma	TP53	NM_001126114	exon7	c.C742T	p.R248W	TGGGCCTCC[G/A]GTTCATGCCG	.	36	30	0.833	42	0	0.000	.	.	Success	255	229	0.898039216	1239	1	0.000807103	229	0	0	0	1	0	0	0
TBP	6908	NCI	37	6	170871013	170871014	+	In_Frame_Ins	INS	-	-	CAG	novel	.	TARGET-50-PAJNUP-01A-01D	TARGET-50-PAJNUP-10A-01D	-	-	-	CAG	-	CAG	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJNUP-10A-01D_hg19.bam	Illumina	.	TBP	NM_001172085	exon2	c.129_130insCAG	p.Q43delinsQQ	.	.	61	32	0.525	7	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
PHF2	5253	NCI	37	9	96439004	96439005	+	In_Frame_Ins	INS	-	-	CCTGCCTCCACCACA	novel	.	TARGET-50-PAJNUP-01A-01D	TARGET-50-PAJNUP-10A-01D	-	-	-	CCTGCCTCCACCACA	-	CCTGCCTCCACCACA	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJNUP-10A-01D_hg19.bam	Illumina	.	PHF2	NM_005392	exon21	c.2961_2962insCCTGCCTCCACCACA	p.T987delinsTPASTT	.	.	98	29	0.296	11	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MAP3K15	389840	NCI	37	X	19379512	19379512	+	Missense_Mutation	SNP	G	G	T	novel	.	TARGET-50-PAJNUP-01A-01D	TARGET-50-PAJNUP-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNUP-10A-01D_hg19.bam	Illumina	.	MAP3K15	NM_001001671	exon28	c.C3802A	p.L1268I	TATCCGAAA[G/T]TGTATAACCC	.	143	51	0.357	203	0	0.000	.	.	Success	381	166	0.435695538	600	0	0	1	166	0	0	0	0	0	0
ODZ1	10178	NCI	37	X	123630914	123630914	+	Missense_Mutation	SNP	A	A	G	novel	.	TARGET-50-PAJNUP-01A-01D	TARGET-50-PAJNUP-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNUP-10A-01D_hg19.bam	Illumina	.	ODZ1	NM_014253	exon20	c.T3647C	p.V1216A	ATTCTCCTT[A/G]CAAAATTGAA	.	132	67	0.508	154	0	0.000	.	.	Success	664	326	0.490963855	524	0	0	0	0	1	326	0	0	0	0
RALGPS2	55103	NCI	37	1	178875930	178875930	+	Missense_Mutation	SNP	A	A	T	novel	.	TARGET-50-PAJNVE-01A-01D	TARGET-50-PAJNVE-10A-01D	A	A	A	T	A	A	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNVE-10A-01D_hg19.bam	Illumina	.	RALGPS2	NM_152663	exon19	c.A1650T	p.Q550H	CAAGTTTCA[A/T]GCTGGCAATA	.	1272	699	0.550	743	0	0.000	.	.	Success	686	354	0.516034985	601	0	0	0	354	0	0	0	0	0	0
PPP1CC	5501	NCI	37	12	111160452	111160452	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PAJNVE-01A-01D	TARGET-50-PAJNVE-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJNVE-10A-01D_hg19.bam	Illumina	.	PPP1CC	NM_001244974	exon5	c.G572A	p.R191Q	TCAGTTGGT[C/T]GCATAATTCG	.	178	70	0.393	188	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MYCBP2	23077	NCI	37	13	77631191	77631191	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PAJNVE-01A-01D	TARGET-50-PAJNVE-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNVE-10A-01D_hg19.bam	Illumina	.	MYCBP2	NM_015057	exon79	c.G13367A	p.R4456Q	AATACTCGC[C/T]GACAGCACTG	.	230	77	0.335	231	0	0.000	.	.	Success	391	143	0.3657289	267	0	0	1	143	0	0	0	0	0	0
TP53	7157	NCI	37	17	7574003	7574003	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TARGET-50-PAJNVE-01A-01D	TARGET-50-PAJNVE-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJNVE-10A-01D_hg19.bam	Illumina	TP53,face,carcinoma	TP53	NM_000546	exon10	c.C1024T	p.R342X	TCAGCTCTC[G/A]GAACATCTCG	.	35	33	0.943	50	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
CCL11	6356	NCI	37	17	32614132	32614132	+	Frame_Shift_Del	DEL	T	T	-	novel	.	TARGET-50-PAJNVE-01A-01D	TARGET-50-PAJNVE-10A-01D	T	T	T	-	T	T	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNVE-10A-01D_hg19.bam	Illumina	.	CCL11	NM_002986	exon2	c.94delT	p.C32fs	.	.	190	89	0.468	329	0	0.000	.	.	Success	977	437	0.447287615	664	6	0.009036145	.	.	.	.	.	.	.	.
NCAM2	4685	NCI	37	21	22746205	22746205	+	Missense_Mutation	SNP	T	T	A	novel	.	TARGET-50-PAJNVE-01A-01D	TARGET-50-PAJNVE-10A-01D	T	T	T	A	T	T	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJNVE-10A-01D_hg19.bam	Illumina	.	NCAM2	NM_004540	exon9	c.T1067A	p.V356D	GTATCGAAG[T/A]CAAAGGGCAG	.	120	58	0.483	166	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
FASTKD3	79072	NCI	37	5	7867997	7867997	+	Missense_Mutation	SNP	G	G	A	novel	.	TARGET-50-PAJNVE-01A-01D	TARGET-50-PAJNVE-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJNVE-10A-01D_hg19.bam	Illumina	.	FASTKD3	NM_024091	exon2	c.C200T	p.S67L	CCATTTTTC[G/A]AATGAAACTT	.	87	37	0.425	139	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
RAD50	10111	NCI	37	5	131973874	131973874	+	Missense_Mutation	SNP	A	A	G	novel	.	TARGET-50-PAJNVE-01A-01D	TARGET-50-PAJNVE-10A-01D	A	A	G	G	A	A	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJNVE-10A-01D_hg19.bam	Illumina	.	RAD50	NM_005732	exon23	c.A3577G	p.T1193A	AAGGGAGAC[A/G]CAGCCTTGGA	.	116	107	0.922	198	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
ZNF711	7552	NCI	37	X	84510794	84510794	+	Nonsense_Mutation	SNP	C	C	G	novel	.	TARGET-50-PAJNVE-01A-01D	TARGET-50-PAJNVE-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNVE-10A-01D_hg19.bam	Illumina	.	ZNF711	NM_021998	exon4	c.C609G	p.Y203X	TGAAGACTA[C/G]TTAATGATAT	.	68	30	0.441	141	0	0.000	.	.	Success	339	160	0.471976401	415	0	0	1	1	0	160	0	0	0	0
NBPF7	343505	NCI	37	1	120382941	120382941	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PAJNVX-01A-01D	TARGET-50-PAJNVX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNVX-10A-01D_hg19.bam	Illumina	.	NBPF7	NM_001047980	exon4	c.G565A	p.D189N	CATCCTCAT[C/T]TGTGTCATTT	.	356	248	0.697	142	0	0.000	.	.	Success	320	178	0.55625	557	0	0	0	178	0	0	0	0	0	0
ALDH1L2	160428	NCI	37	12	105446605	105446605	+	Missense_Mutation	SNP	G	G	T	novel	.	TARGET-50-PAJNVX-01A-01D	TARGET-50-PAJNVX-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNVX-10A-01D_hg19.bam	Illumina	.	ALDH1L2	NM_001034173	exon11	c.C1392A	p.N464K	ATCTGTTGG[G/T]TTGATAGTGT	.	270	35	0.130	95	0	0.000	.	.	Success	274	49	0.178832117	217	0	0	0	49	0	0	0	0	0	0
TMEM116	89894	NCI	37	12	112369489	112369489	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PAJNVX-01A-01D	TARGET-50-PAJNVX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJNVX-10A-01D_hg19.bam	Illumina	.	TMEM116	NM_138341	exon10	c.G674A	p.S225N	AAGCCCCTG[C/T]TATAGAATCT	.	356	169	0.475	117	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
TP53	7157	NCI	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	rs28934578	.	TARGET-50-PAJNVX-01A-01D	TARGET-50-PAJNVX-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNVX-10A-01D_hg19.bam	Illumina	TP53,NS,carcinoma	TP53	NM_001126114	exon5	c.G524A	p.R175H	TGGGGGCAG[C/T]GCCTCACAAC	.	43	41	0.953	41	0	0.000	.	.	Success	296	279	0.942567568	445	0	0	0	279	0	0	0	0	0	0
NLK	51701	NCI	37	17	26495608	26495608	+	Missense_Mutation	SNP	C	C	G	novel	.	TARGET-50-PAJNVX-01A-01D	TARGET-50-PAJNVX-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNVX-10A-01D_hg19.bam	Illumina	.	NLK	NM_016231	exon6	c.C972G	p.I324M	TATTGACAT[C/G]TGGTCTGTGG	.	236	43	0.182	114	0	0.000	.	.	Success	862	161	0.186774942	710	0	0	0	0	0	161	0	0	0	0
IRF5	3663	NCI	37	7	128587352	128587381	+	In_Frame_Del	DEL	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	-	novel	.	TARGET-50-PAJNVX-01A-01D	TARGET-50-PAJNVX-10A-01D	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	-	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	-	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJNVX-10A-01D_hg19.bam	Illumina	.	IRF5	NM_001098627	exon6	c.502_531del	p.168_177del	.	.	16	10	0.625	19	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
ZNF746	155061	NCI	37	7	149172548	149172548	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PAJNVX-01A-01D	TARGET-50-PAJNVX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJNVX-10A-01D_hg19.bam	Illumina	.	ZNF746	NM_001163474	exon7	c.G865A	p.E289K	CCTGGACTT[C/T]TGTTTTTATT	.	46	29	0.630	109	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
BCOR	54880	NCI	37	X	39921417	39921460	+	Frame_Shift_Del	DEL	TGCAGAAGGGTCTCGCCAGCGTTCTTATTGACAATAAGTCTCCG	TGCAGAAGGGTCTCGCCAGCGTTCTTATTGACAATAAGTCTCCG	-	novel	.	TARGET-50-PAJNVX-01A-01D	TARGET-50-PAJNVX-10A-01D	TGCAGAAGGGTCTCGCCAGCGTTCTTATTGACAATAAGTCTCCG	TGCAGAAGGGTCTCGCCAGCGTTCTTATTGACAATAAGTCTCCG	-	-	-	-	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJNVX-10A-01D_hg19.bam	Illumina	.	BCOR	NM_001123383	exon10	c.4258_4301del	p.1420_1434del	.	.	54	27	0.500	39	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
CDC73	79577	NCI	37	1	193219805	193219805	+	Splice_site	SNP	G	G	T	novel	.	TARGET-50-PAJPDC-01A-01D	TARGET-50-PAJPDC-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic	.	Capture	"454, Sanger"	.	TARGET-50-PAJPDC-10A-01D_hg19.bam	Illumina	.	CDC73	.	.	.	.	TTTTTTTCA[G/T]GTACATGGTA	.	531	358	0.674	164	0	0.000	.	.	Success	360	242	0.672222222	0	0	0	0	242	0	0	0	0	0	0
DNHD1	144132	NCI	37	11	6592009	6592009	+	Missense_Mutation	SNP	G	G	A	novel	.	TARGET-50-PAJPDC-01A-01D	TARGET-50-PAJPDC-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic	.	Capture	"454, Sanger"	.	TARGET-50-PAJPDC-10A-01D_hg19.bam	Illumina	.	DNHD1	NM_144666	exon42	c.G13267A	p.V4423M	AGTTCACCC[G/A]TGTGGGTTCC	.	14	4	0.286	13	0	0.000	.	.	Success	295	128	0.433898305	0	0	0	128	1	1	0	0	0	0	0
CCER1	196477	NCI	37	12	91347861	91347861	+	Missense_Mutation	SNP	G	G	A	novel	.	TARGET-50-PAJPDC-01A-01D	TARGET-50-PAJPDC-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic	.	Capture	"454, Sanger"	.	TARGET-50-PAJPDC-10A-01D_hg19.bam	Illumina	.	.	NM_152638	exon1	c.C659T	p.T220M	CCGCTCACC[G/A]TGGCCTTCTG	.	46	30	0.652	65	0	0.000	.	.	Success	473	279	0.589852008	0	0	0	279	0	0	0	0	0	0	0
GTF2H3	2967	NCI	37	12	124130036	124130036	+	Missense_Mutation	SNP	T	T	C	novel	.	TARGET-50-PAJPDC-01A-01D	TARGET-50-PAJPDC-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic	.	Capture	"454, Sanger"	.	TARGET-50-PAJPDC-10A-01D_hg19.bam	Illumina	.	GTF2H3	NM_001516	exon3	c.T128C	p.V43A	CCGTGATGG[T/C]GCTGGGAAAT	.	653	229	0.351	216	0	0.000	.	.	Success	857	301	0.351225204	0	0	0	2	0	301	0	0	0	0	0
MTMR3	8897	NCI	37	22	30415881	30415881	+	Missense_Mutation	SNP	C	C	G	novel	.	TARGET-50-PAJPDC-01A-01D	TARGET-50-PAJPDC-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJPDC-10A-01D_hg19.bam	Illumina	.	MTMR3	NM_153050	exon17	c.C2233G	p.L745V	GACCCAGAA[C/G]TGGGTGATGC	.	60	24	0.400	58	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
KHDRBS3	10656	NCI	37	8	136594271	136594271	+	Nonsense_Mutation	SNP	C	C	G	novel	.	TARGET-50-PAJPDC-01A-01D	TARGET-50-PAJPDC-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic	.	Capture	"454, Sanger"	.	TARGET-50-PAJPDC-10A-01D_hg19.bam	Illumina	.	KHDRBS3	NM_006558	exon6	c.C762G	p.Y254X	AACTGGGTA[C/G]AGACCTCCAC	.	21	10	0.476	33	0	0.000	.	.	Success	712	288	0.404494382	0	0	0	0	0	0	288	0	0	0	0
COL3A1	1281	NCI	37	2	189864042	189864042	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PAKECR-01A-01D	TARGET-50-PAKECR-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAKECR-10A-01D_hg19.bam	Illumina	.	COL3A1	NM_000090	exon30	c.C2054T	p.P685L	AACGTGGAC[C/T]TCCTGGATTG	.	137	22	0.161	141	0	0.000	.	.	Success	408	44	0.107843137	470	0	0	0	44	0	0	0	0	0	0
NXPE3	91775	NCI	37	3	101540334	101540334	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PAKECR-01A-01D	TARGET-50-PAKECR-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAKECR-10A-01D_hg19.bam	Illumina	.	.	NM_001134456	exon8	c.C1216T	p.R406C	CTCAAATAC[C/T]GCTGCCATGG	.	109	34	0.312	90	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MAX	4149	NCI	37	14	65544747	65544747	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PAKGZX-01A-01D	TARGET-50-PAKGZX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAKGZX-10A-01D_hg19.bam	Illumina	.	MAX	NM_145112	exon3	c.G152A	p.R51Q	ATTTGGGCC[C/T]GGGATGCCTG	.	82	31	0.378	238	0	0.000	.	.	Success	1432	618	0.431564246	870	0	0	1	618	0	0	0	0	0	0
CCDC33	80125	NCI	37	15	74588191	74588191	+	Missense_Mutation	SNP	T	T	C	novel	.	TARGET-50-PAKGZX-01A-01D	TARGET-50-PAKGZX-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAKGZX-10A-01D_hg19.bam	Illumina	.	CCDC33	NM_025055	exon11	c.T1192C	p.W398R	CAAGAGTCC[T/C]GGTCCAAGGA	.	33	18	0.545	79	0	0.000	.	.	Success	523	232	0.443594646	634	1	0.001577287	0	0	232	1	0	0	1	0
C16orf46	123775	NCI	37	16	81094801	81094802	+	Frame_Shift_Del	DEL	CT	CT	-	novel	.	TARGET-50-PAKGZX-01A-01D	TARGET-50-PAKGZX-10A-01D	CT	CT	CT	-	CT	CT	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAKGZX-10A-01D_hg19.bam	Illumina	.	C16orf46	NM_152337	exon4	c.1152_1153del	p.384_385del	.	.	42	13	0.310	94	0	0.000	.	.	Success	1231	560	0.454914703	970	0	0	.	.	.	.	.	.	.	.
CRHR1	1394	NCI	37	17	43906951	43906951	+	Silent	SNP	C	C	T	novel	.	TARGET-50-PAKGZX-01A-01D	TARGET-50-PAKGZX-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAKGZX-10A-01D_hg19.bam	Illumina	.	CRHR1	NM_001145146	exon6	c.C459T	p.D153D	TTGGGGTGA[C/T]CAGGCAGATG	.	16	4	0.250	22	0	0.000	.	.	Success	722	297	0.411357341	856	0	0	1	297	0	0	0	0	0	0
TBC1D8	11138	NCI	37	2	101650015	101650015	+	Silent	SNP	T	T	A	novel	.	TARGET-50-PAKGZX-01A-01D	TARGET-50-PAKGZX-10A-01D	T	T	T	A	T	T	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAKGZX-10A-01D_hg19.bam	Illumina	.	TBC1D8	NM_001102426	exon10	c.A1764T	p.G588G	CTGGCAGTA[T/A]CCAATCTTGG	.	34	16	0.471	84	0	0.000	.	.	Success	503	218	0.433399602	468	0	0	218	0	5	0	0	0	4	0
ADAM23	8745	NCI	37	2	207424727	207424727	+	Missense_Mutation	SNP	A	A	G	novel	.	TARGET-50-PAKGZX-01A-01D	TARGET-50-PAKGZX-10A-01D	A	A	A	G	A	A	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAKGZX-10A-01D_hg19.bam	Illumina	.	ADAM23	NM_003812	exon11	c.A1054G	p.T352A	GCTGTAGAG[A/G]CCTGGACTGA	.	47	16	0.340	142	0	0.000	.	.	Success	527	299	0.567362429	810	1	0.001234568	0	0	0	299	0	0	0	1
CD180	4064	NCI	37	5	66479606	66479606	+	Silent	SNP	G	G	A	novel	.	TARGET-50-PAKGZX-01A-01D	TARGET-50-PAKGZX-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAKGZX-10A-01D_hg19.bam	Illumina	.	CD180	NM_005582	exon3	c.C1065T	p.N355N	TTTCTTCAC[G/A]TTGCCTCTGA	.	40	19	0.475	110	0	0.000	.	.	Success	656	297	0.452743902	749	2	0.002670227	297	0	1	0	2	0	0	0
FAM123B	139285	NCI	37	X	63412684	63412685	+	Frame_Shift_Ins	INS	-	-	G	novel	.	TARGET-50-PAKGZX-01A-01D	TARGET-50-PAKGZX-10A-01D	-	-	-	G	-	-	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAKGZX-10A-01D_hg19.bam	Illumina	.	FAM123B	NM_152424	exon2	c.483_484insC	p.S161fs	.	.	5	4	0.800	12	0	0.000	.	.	Success	1779	1534	0.862282181	1013	25	0.024679171	.	.	.	.	.	.	.	.
TMPRSS13	84000	NCI	37	11	117789313	117789327	+	In_Frame_Del	DEL	GGGCTGGAGATGCCT	GGGCTGGAGATGCCT	-	novel	.	TARGET-50-PAKKNS-01A-01D	TARGET-50-PAKKNS-10A-01D	GGGCTGGAGATGCCT	GGGCTGGAGATGCCT	-	-	-	-	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAKKNS-10A-01D_hg19.bam	Illumina	.	TMPRSS13	NM_001206789	exon2	c.248_262del	p.83_88del	.	.	74	40	0.541	12	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
TP53	7157	NCI	37	17	7574003	7574003	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TARGET-50-PAKKNS-01A-01D	TARGET-50-PAKKNS-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAKKNS-10A-01D_hg19.bam	Illumina	TP53,face,carcinoma	TP53	NM_000546	exon10	c.C1024T	p.R342X	TCAGCTCTC[G/A]GAACATCTCG	.	28	14	0.500	19	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
TTN	7273	NCI	37	2	179606346	179606346	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PAKKNS-01A-01D	TARGET-50-PAKKNS-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAKKNS-10A-01D_hg19.bam	Illumina	.	TTN	NM_001256850	exon46	c.G10663A	p.G3555S	GATCATCAC[C/T]GTCAAAAACA	.	250	125	0.500	132	0	0.000	.	.	Success	538	229	0.425650558	526	0	0	1	229	0	1	0	0	0	0
ENPP6	133121	NCI	37	4	185038065	185038065	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PAKKNS-01A-01D	TARGET-50-PAKKNS-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAKKNS-10A-01D_hg19.bam	Illumina	.	ENPP6	NM_153343	exon5	c.G799A	p.V267M	GGTCCTTCA[C/T]TTGCTGCAGG	.	133	53	0.398	38	0	0.000	.	.	Success	271	119	0.439114391	227	0	0	0	119	0	0	0	0	0	0
TARBP1	6894	NCI	37	1	234608544	234608544	+	Silent	SNP	A	A	G	novel	.	TARGET-50-PAKMSV-01A-01D	TARGET-50-PAKMSV-10A-01D	A	G	A	G	A	A	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAKMSV-10A-01D_hg19.bam	Illumina	.	TARBP1	NM_005646	exon2	c.T945C	p.F315F	AGACCACCA[A/G]AACAGACTTG	.	308	61	0.198	140	1	0.007	.	.	Success	1305	86	0.065900383	1679	4	0.00238237	0	0	0	86	0	1	0	4
F7	2155	NCI	37	13	113768084	113768084	+	Missense_Mutation	SNP	T	T	C	novel	.	TARGET-50-PAKMSV-01A-01D	TARGET-50-PAKMSV-10A-01D	T	T	T	C	T	T	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAKMSV-10A-01D_hg19.bam	Illumina	.	F7	NM_000131	exon4	c.A310C	p.S104R	TGGATTTCT[T/C]ACAGTGGTGA	.	73	9	0.123	108	0	0.000	.	.	Success	455	97	0.213186813	886	7	0.007900677	0	0	97	0	0	0	7	0
KIAA0556	23247	NCI	37	16	27752043	27752043	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PAKMSV-01A-01D	TARGET-50-PAKMSV-10A-01D	C	C	T	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAKMSV-10A-01D_hg19.bam	Illumina	.	KIAA0556	NM_015202	exon15	c.C2425T	p.R809W	AAAGGCCTA[C/T]GGCATGAGCC	.	24	8	0.333	50	0	0.000	.	.	Success	534	531	0.994382022	738	7	0.009485095	0	531	0	1	0	7	0	0
APOBEC3D	140564	NCI	37	22	39421295	39421295	+	Missense_Mutation	SNP	G	G	A	novel	.	TARGET-50-PAKMSV-01A-01D	TARGET-50-PAKMSV-10A-01D	G	A	A	A	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAKMSV-10A-01D_hg19.bam	Illumina	.	APOBEC3D	NM_152426	exon3	c.G431A	p.R144Q	GAGATTGGC[G/A]GTGGGTGCTC	.	62	35	0.565	84	1	0.012	.	.	Success	259	250	0.965250965	399	3	0.007518797	250	0	1	0	3	0	3	0
PADI3	51702	NCI	37	1	17575681	17575681	+	Missense_Mutation	SNP	G	G	A	novel	.	TARGET-50-PAKXWB-01A-01D	TARGET-50-PAKXWB-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAKXWB-10A-01D_hg19.bam	Illumina	.	PADI3	NM_016233	exon1	c.G49A	p.A17T	CCCACCAGC[G/A]CGGTGTGTGT	.	266	84	0.316	76	0	0.000	.	.	Success	368	143	0.388586957	719	1	0.001390821	143	0	0	0	1	0	0	0
ZYG11A	440590	NCI	37	1	53352725	53352725	+	Missense_Mutation	SNP	C	C	A	novel	.	TARGET-50-PAKXWB-01A-01D	TARGET-50-PAKXWB-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAKXWB-10A-01D_hg19.bam	Illumina	.	ZYG11A	NM_001004339	exon13	c.C2104A	p.P702T	AGTAAAAAT[C/A]GTATGTATTC	.	452	196	0.434	326	0	0.000	.	.	Success	347	138	0.397694524	367	0	0	138	0	0	0	0	1	0	0
ACVR1C	130399	NCI	37	2	158401012	158401012	+	Silent	SNP	C	C	T	novel	.	TARGET-50-PAKXWB-01A-01D	TARGET-50-PAKXWB-10A-01D	C	T	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAKXWB-10A-01D_hg19.bam	Illumina	.	ACVR1C	NM_001111031	exon5	c.G738A	p.A246A	AATTGAGAG[C/T]GCCAGCTTGA	.	235	74	0.315	176	1	0.006	.	.	Success	420	103	0.245238095	727	0	0	0	103	0	0	0	0	0	0
FAM171B	165215	NCI	37	2	187559047	187559048	+	In_Frame_Ins	INS	-	-	CAA	novel	.	TARGET-50-PAKXWB-01A-01D	TARGET-50-PAKXWB-10A-01D	-	-	-	CAA	-	CAA	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAKXWB-10A-01D_hg19.bam	Illumina	.	FAM171B	NM_177454	exon1	c.147_148insCAA	p.Q49delinsQQ	.	.	35	16	0.457	9	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
SCG2	7857	NCI	37	2	224462739	224462739	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PAKXWB-01A-01D	TARGET-50-PAKXWB-10A-01D	C	T	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAKXWB-10A-01D_hg19.bam	Illumina	.	SCG2	NM_003469	exon2	c.G1262A	p.R421H	GTCCCAGCA[C/T]GACCAGGTGT	.	116	47	0.405	56	1	0.018	.	.	Success	835	371	0.444311377	1092	0	0	0	371	0	1	0	0	0	0
PHF5A	84844	NCI	37	22	41863526	41863526	+	Missense_Mutation	SNP	G	G	A	novel	.	TARGET-50-PAKXWB-01A-01D	TARGET-50-PAKXWB-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAKXWB-10A-01D_hg19.bam	Illumina	.	PHF5A	NM_032758	exon3	c.C169T	p.R57C	TCACACAGC[G/A]CCCCTGGTAA	.	205	79	0.385	108	0	0.000	.	.	Success	443	181	0.408577878	469	0	0	181	0	2	0	0	0	0	0
NEFH	4744	NCI	37	22	29885567	29885568	+	In_Frame_Ins	INS	-	-	AAGTCCCCTGAGAAGGCC	novel	.	TARGET-50-PAKXXF-01A-01D	TARGET-50-PAKXXF-10A-01D	-	-	-	AAGTCCCCTGAGAAGGCC	-	AAGTCCCCTGAGAAGGCC	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAKXXF-10A-01D_hg19.bam	Illumina	.	NEFH	NM_021076	exon4	c.1938_1939insAAGTCCCCTGAGAAGGCC	p.A646delinsAKSPEKA	.	.	89	32	0.360	60	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
UGT2B7	7364	NCI	37	4	69973896	69973896	+	Missense_Mutation	SNP	C	C	G	novel	.	TARGET-50-PAKXXF-01A-01D	TARGET-50-PAKXXF-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAKXXF-10A-01D_hg19.bam	Illumina	.	UGT2B7	NM_001074	exon5	c.C1166G	p.P389R	ATGGGATCC[C/G]TATGGTGGGG	.	69	7	0.101	83	0	0.000	.	.	Success	353	32	0.090651558	333	0	0	0	0	0	32	0	1	0	0
ZNF678	339500	NCI	37	1	227842649	227842649	+	Missense_Mutation	SNP	G	G	T	novel	.	TARGET-50-PALFME-01A-01D	TARGET-50-PALFME-11A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PALFME-11A-01D_hg19.bam	Illumina	.	ZNF678	NM_178549	exon4	c.G863T	p.G288V	TTCATACTG[G/T]AGAGAAACCC	.	74	32	0.432	49	0	0.000	.	.	Success	321	161	0.501557632	754	0	0	0	161	0	0	1	0	0	0
MMRN2	79812	NCI	37	10	88702145	88702145	+	Missense_Mutation	SNP	G	G	A	novel	.	TARGET-50-PALFME-01A-01D	TARGET-50-PALFME-11A-01D	G	A	G	A	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PALFME-11A-01D_hg19.bam	Illumina	.	MMRN2	NM_024756	exon6	c.C2396T	p.A799V	AAAGGCTCC[G/A]CTTCCTTCTT	.	101	56	0.554	95	1	0.011	.	.	Success	1046	516	0.493307839	2205	3	0.001360544	516	0	2	0	3	0	1	0
CHD4	1108	NCI	37	12	6701976	6701976	+	Missense_Mutation	SNP	C	C	G	novel	.	TARGET-50-PALFME-01A-01D	TARGET-50-PALFME-11A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PALFME-11A-01D_hg19.bam	Illumina	.	CHD4	NM_001273	exon18	c.G2660C	p.R887P	TTCAATACC[C/G]GGAAGAACTG	.	263	79	0.300	120	0	0.000	.	.	Success	310	100	0.322580645	1357	2	0.001473839	0	0	0	100	0	1	0	2
STK11IP	114790	NCI	37	2	220470740	220470740	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PALFME-01A-01D	TARGET-50-PALFME-11A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PALFME-11A-01D_hg19.bam	Illumina	.	STK11IP	NM_052902	exon9	c.C841T	p.R281W	GAAGGACAC[C/T]GGGAGCTGTC	.	19	7	0.368	18	0	0.000	.	.	Success	394	140	0.355329949	507	0	0	0	140	0	0	0	0	0	0
MFSD10	10227	NCI	37	4	2933305	2933305	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PALFME-01A-01D	TARGET-50-PALFME-11A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PALFME-11A-01D_hg19.bam	Illumina	.	MFSD10	NM_001120	exon8	c.G1000A	p.G334R	CAACTTCCC[C/T]GCCAGGGTGG	.	13	7	0.538	18	0	0.000	.	.	Success	655	363	0.554198473	1936	1	0.000516529	0	363	0	0	0	1	0	2
AOAH	313	NCI	37	7	36726345	36726345	+	Missense_Mutation	SNP	G	G	A	rs148515077	.	TARGET-50-PALFME-01A-01D	TARGET-50-PALFME-11A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PALFME-11A-01D_hg19.bam	Illumina	.	AOAH	NM_001637	exon2	c.C182T	p.T61M	GCCTGGACC[G/A]TCGAGTTGTG	.	71	52	0.732	131	0	0.000	.	.	Success	941	871	0.925611052	2272	0	0	871	1	1	0	0	0	0	0
DCC	1630	NCI	37	18	50831952	50831952	+	Missense_Mutation	SNP	T	T	G	novel	.	TARGET-50-PALGLU-01A-01D	TARGET-50-PALGLU-10A-01D	T	T	T	G	T	T	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PALGLU-10A-01D_hg19.bam	Illumina	.	DCC	NM_005215	exon13	c.T1916G	p.I639S	TACAGAGTA[T/G]CAAAGTTAGC	.	144	24	0.167	147	0	0.000	.	.	Success	265	45	0.169811321	473	0	0	0	0	2	45	1	0	1	0
SLC27A5	10998	NCI	37	19	59011992	59011992	+	Missense_Mutation	SNP	G	G	A	novel	.	TARGET-50-PALGLU-01A-01D	TARGET-50-PALGLU-10A-01D	G	A	G	A	G	G	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PALGLU-10A-01D_hg19.bam	Illumina	SLC27A5,rectum,carcinoma	SLC27A5	NM_012254	exon5	c.C1264T	p.R422C	GACCGAAGC[G/A]CTGCTGGAAG	.	87	45	0.517	70	1	0.014	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
CHD7	55636	NCI	37	8	61765056	61765056	+	Splice_site	SNP	G	G	C	novel	.	TARGET-50-PALGLU-01A-01D	TARGET-50-PALGLU-10A-01D	G	C	G	C	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PALGLU-10A-01D_hg19.bam	Illumina	.	CHD7	.	.	.	.	TTTCTAACA[G/C]GTGGACAAGA	.	128	46	0.359	194	1	0.005	.	.	Success	492	218	0.443089431	481	4	0.008316008	0	0	218	0	0	0	4	0
ERC1	23085	NCI	37	12	1137263	1137263	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PALJIP-01A-01D	TARGET-50-PALJIP-11A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PALJIP-11A-01D_hg19.bam	Illumina	.	ERC1	NM_178039	exon2	c.C194T	p.A65V	TAAATGCTG[C/T]CTATGCCACC	.	83	24	0.289	26	0	0.000	.	.	Success	724	248	0.342541436	976	1	0.00102459	0	248	0	0	0	1	0	0
RNF115	27246	NCI	37	1	145663214	145663214	+	Missense_Mutation	SNP	G	G	T	novel	.	TARGET-50-PAJNGH-02A-01D	TARGET-50-PAJNGH-10A-01D	G	T	G	T	G	G	Unknown	Valid	Somatic	.	Capture	"454, Sanger"	.	TARGET-50-PAJNGH-10A-01D_hg19.bam	Illumina	.	RNF115	NM_014455	exon4	c.G275T	p.S92I	CCTTTCTAA[G/T]TAGCAGTCCA	.	1113	522	0.469	394	1	0.003	.	.	Success	150	73	0.486666667	0	0	0	0	73	1	0	0	0	0	0
PALD1	27143	NCI	37	10	72298062	72298062	+	Missense_Mutation	SNP	C	C	A	novel	.	TARGET-50-PAJNGH-02A-01D	TARGET-50-PAJNGH-10A-01D	C	A	C	A	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNGH-10A-01D_hg19.bam	Illumina	.	.	NM_014431	exon12	c.C1350A	p.F450L	CCTCAGTTT[C/A]AGCCGCTGGC	.	25	12	0.480	18	1	0.056	.	.	Success	352	161	0.457386364	395	5	0.012658228	161	0	0	0	5	0	0	0
ABCC11	85320	NCI	37	16	48201195	48201195	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TARGET-50-PAJNGH-02A-01D	TARGET-50-PAJNGH-10A-01D	G	T	G	T	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNGH-10A-01D_hg19.bam	Illumina	.	ABCC11	NM_145186	exon29	c.C4025A	p.S1342X	TATCTCAGT[G/T]AAGAAGTGGC	.	75	31	0.413	92	1	0.011	.	.	Success	648	272	0.419753086	1733	7	0.004039238	0	272	0	0	0	7	0	0
NFAT5	10725	NCI	37	16	69725760	69725760	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TARGET-50-PAJNGH-02A-01D	TARGET-50-PAJNGH-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNGH-10A-01D_hg19.bam	Illumina	.	NFAT5	NM_173215	exon13	c.G1750T	p.E584X	TCTGAAAAT[G/T]AAAAACAGCA	.	332	152	0.458	421	0	0.000	.	.	Success	501	199	0.397205589	623	0	0	1	199	0	0	4	0	0	0
CDC42EP1	11135	NCI	37	22	37964409	37964429	+	In_Frame_Del	DEL	CAGCGCCTGCTGCAAACCCCT	CAGCGCCTGCTGCAAACCCCT	-	novel	.	TARGET-50-PAJNGH-02A-01D	TARGET-50-PAJNGH-10A-01D	CAGCGCCTGCTGCAAACCCCT	CAGCGCCTGCTGCAAACCCCT	CAGCGCCTGCTGCAAACCCCT	-	CAGCGCCTGCTGCAAACCCCT	CAGCGCCTGCTGCAAACCCCT	Unknown	Valid	Somatic	.	Capture	"454, Sanger"	.	TARGET-50-PAJNGH-10A-01D_hg19.bam	Illumina	.	CDC42EP1	NM_152243	exon3	c.758_778del	p.253_260del	.	.	11	4	0.364	9	0	0.000	.	.	Success	627	216	0.344497608	0	0	0	.	.	.	.	.	.	.	.
ADCY5	111	NCI	37	3	123033118	123033118	+	Missense_Mutation	SNP	C	C	A	novel	.	TARGET-50-PAJNGH-02A-01D	TARGET-50-PAJNGH-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNGH-10A-01D_hg19.bam	Illumina	.	ADCY5	NM_183357	exon12	c.G2406T	p.L802F	AAACACCAC[C/A]AAGGTCAGCA	.	217	99	0.456	200	0	0.000	.	.	Success	424	182	0.429245283	1055	15	0.014218009	182	0	0	0	15	0	0	0
PTPN13	5783	NCI	37	4	87671686	87671686	+	Missense_Mutation	SNP	G	G	A	rs189080752	.	TARGET-50-PAJNGH-02A-01D	TARGET-50-PAJNGH-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNGH-10A-01D_hg19.bam	Illumina	.	PTPN13	NM_080683	exon18	c.G2714A	p.R905Q	ATATGGGAC[G/A]AGCAATCAGC	.	100	21	0.210	131	0	0.000	.	.	Success	427	103	0.241217799	407	0	0	103	0	2	0	0	0	0	0
PCDH12	51294	NCI	37	5	141335198	141335198	+	Missense_Mutation	SNP	C	C	A	novel	.	TARGET-50-PAJNGH-02A-01D	TARGET-50-PAJNGH-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNGH-10A-01D_hg19.bam	Illumina	.	PCDH12	NM_016580	exon1	c.G2219T	p.C740F	TCTGTCCGG[C/A]AGATGGACAT	.	27	7	0.259	36	0	0.000	.	.	Success	820	123	0.15	891	0	0	123	0	0	0	0	0	0	0
FNTA	2339	NCI	37	8	42940022	42940022	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TARGET-50-PAJNGH-02A-01D	TARGET-50-PAJNGH-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNGH-10A-01D_hg19.bam	Illumina	.	FNTA	NM_002027	exon8	c.G1015T	p.E339X	AAAGCATTA[G/T]AGGTAAGCTG	.	341	58	0.170	364	0	0.000	.	.	Success	380	61	0.160526316	716	0	0	0	61	0	0	1	0	0	0
ARHGEF17	9828	NCI	37	11	73076591	73076591	+	Missense_Mutation	SNP	G	G	A	rs140379964	.	TARGET-50-PAJNTJ-02A-01D	TARGET-50-PAJNTJ-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJNTJ-10A-01D_hg19.bam	Illumina	.	ARHGEF17	NM_014786	exon19	c.G5707A	p.V1903M	ACTCCTCCC[G/A]TGCACAGGAT	.	71	40	0.563	36	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
RUSC2	9853	NCI	37	9	35558534	35558534	+	Missense_Mutation	SNP	G	G	A	novel	.	TARGET-50-PAJNTJ-02A-01D	TARGET-50-PAJNTJ-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PAJNTJ-10A-01D_hg19.bam	Illumina	.	RUSC2	NM_014806	exon8	c.G3311A	p.R1104H	ATACCATGC[G/A]CTTCAACGCC	.	182	81	0.445	76	0	0.000	.	.	Success	1432	442	0.308659218	955	1	0.00104712	442	0	0	0	1	0	0	0
CDC73	79577	NCI	37	1	193219805	193219805	+	Splice_site	SNP	G	G	T	novel	.	TARGET-50-PAJPDC-02A-01D	TARGET-50-PAJPDC-10A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic	.	Capture	"454, Sanger"	.	TARGET-50-PAJPDC-10A-01D_hg19.bam	Illumina	.	CDC73	.	.	.	.	TTTTTTTCA[G/T]GTACATGGTA	.	720	402	0.558	164	0	0.000	.	.	Success	560	318	0.567857143	0	0	0	0	318	1	0	0	0	0	0
DNHD1	144132	NCI	37	11	6592009	6592009	+	Missense_Mutation	SNP	G	G	A	novel	.	TARGET-50-PAJPDC-02A-01D	TARGET-50-PAJPDC-10A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic	.	Capture	"454, Sanger"	.	TARGET-50-PAJPDC-10A-01D_hg19.bam	Illumina	.	DNHD1	NM_144666	exon42	c.G13267A	p.V4423M	AGTTCACCC[G/A]TGTGGGTTCC	.	18	9	0.500	13	0	0.000	.	.	Success	719	256	0.35605007	0	0	0	256	0	0	0	0	0	0	0
CCER1	196477	NCI	37	12	91347861	91347861	+	Missense_Mutation	SNP	G	G	A	novel	.	TARGET-50-PAJPDC-02A-01D	TARGET-50-PAJPDC-10A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	.	Capture	"454, Sanger"	.	TARGET-50-PAJPDC-10A-01D_hg19.bam	Illumina	.	.	NM_152638	exon1	c.C659T	p.T220M	CCGCTCACC[G/A]TGGCCTTCTG	.	46	30	0.652	65	0	0.000	.	.	Success	793	438	0.552332913	0	0	0	438	2	3	0	0	0	0	0
HDAC4	9759	NCI	37	2	240036978	240036978	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PAJPDC-02A-01D	TARGET-50-PAJPDC-10A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJPDC-10A-01D_hg19.bam	Illumina	.	HDAC4	NM_006037	exon13	c.G1547A	p.R516Q	TCCGGCTGC[C/T]GGGCTGGCTC	.	13	8	0.615	7	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
MTMR3	8897	NCI	37	22	30415881	30415881	+	Missense_Mutation	SNP	C	C	G	novel	.	TARGET-50-PAJPDC-02A-01D	TARGET-50-PAJPDC-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJPDC-10A-01D_hg19.bam	Illumina	.	MTMR3	NM_153050	exon17	c.C2233G	p.L745V	GACCCAGAA[C/G]TGGGTGATGC	.	59	25	0.424	58	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
ASB5	140458	NCI	37	4	177138062	177138062	+	Missense_Mutation	SNP	C	C	G	novel	.	TARGET-50-PAJPDC-02A-01D	TARGET-50-PAJPDC-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic	.	Capture	"454, Sanger"	.	TARGET-50-PAJPDC-10A-01D_hg19.bam	Illumina	.	ASB5	NM_080874	exon6	c.G769C	p.A257P	TGATATCTG[C/G]TCCAAATTCT	.	511	198	0.387	266	0	0.000	.	.	Success	607	176	0.289950577	0	0	0	0	0	0	176	0	0	0	0
KHDRBS3	10656	NCI	37	8	136594271	136594271	+	Nonsense_Mutation	SNP	C	C	G	novel	.	TARGET-50-PAJPDC-02A-01D	TARGET-50-PAJPDC-10A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic	.	Capture	"454, Sanger"	.	TARGET-50-PAJPDC-10A-01D_hg19.bam	Illumina	.	KHDRBS3	NM_006558	exon6	c.C762G	p.Y254X	AACTGGGTA[C/G]AGACCTCCAC	.	16	7	0.438	33	0	0.000	.	.	Success	820	277	0.337804878	0	0	0	1	0	0	277	0	0	0	0
MAMDC4	158056	NCI	37	9	139752229	139752229	+	Missense_Mutation	SNP	C	C	A	novel	.	TARGET-50-PAJPDC-02A-01D	TARGET-50-PAJPDC-10A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic	.	Capture	Sanger	.	TARGET-50-PAJPDC-10A-01D_hg19.bam	Illumina	.	MAMDC4	NM_206920	exon19	c.C2445A	p.H815Q	CTGGTACCA[C/A]GGGAGCCTCC	.	14	5	0.357	13	0	0.000	.	.	Success	.	.	.	.	.	.	.	.	.	.	.	.	.	.
ZNF678	339500	NCI	37	1	227842649	227842649	+	Missense_Mutation	SNP	G	G	T	novel	.	TARGET-50-PALFME-02A-01D	TARGET-50-PALFME-11A-01D	G	G	G	T	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PALFME-11A-01D_hg19.bam	Illumina	.	ZNF678	NM_178549	exon4	c.G863T	p.G288V	TTCATACTG[G/T]AGAGAAACCC	.	86	41	0.477	49	0	0.000	.	.	Success	321	161	0.501557632	754	0	0	0	161	0	0	1	0	0	0
MMRN2	79812	NCI	37	10	88702145	88702145	+	Missense_Mutation	SNP	G	G	A	novel	.	TARGET-50-PALFME-02A-01D	TARGET-50-PALFME-11A-01D	G	A	G	A	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PALFME-11A-01D_hg19.bam	Illumina	.	MMRN2	NM_024756	exon6	c.C2396T	p.A799V	AAAGGCTCC[G/A]CTTCCTTCTT	.	83	40	0.482	95	1	0.011	.	.	Success	1046	516	0.493307839	2205	3	0.001360544	516	0	2	0	3	0	1	0
CHD4	1108	NCI	37	12	6701976	6701976	+	Missense_Mutation	SNP	C	C	G	novel	.	TARGET-50-PALFME-02A-01D	TARGET-50-PALFME-11A-01D	C	C	C	G	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PALFME-11A-01D_hg19.bam	Illumina	.	CHD4	NM_001273	exon18	c.G2660C	p.R887P	TTCAATACC[C/G]GGAAGAACTG	.	248	84	0.339	120	0	0.000	.	.	Success	310	100	0.322580645	1357	2	0.001473839	0	0	0	100	0	1	0	2
AOAH	313	NCI	37	7	36726345	36726345	+	Missense_Mutation	SNP	G	G	A	rs148515077	.	TARGET-50-PALFME-02A-01D	TARGET-50-PALFME-11A-01D	G	G	A	A	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PALFME-11A-01D_hg19.bam	Illumina	.	AOAH	NM_001637	exon2	c.C182T	p.T61M	GCCTGGACC[G/A]TCGAGTTGTG	.	77	73	0.948	131	0	0.000	.	.	Success	941	871	0.925611052	2272	0	0	871	1	1	0	0	0	0	0
GATA4	2626	NCI	37	8	11607632	11607632	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PALFME-02A-01D	TARGET-50-PALFME-11A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PALFME-11A-01D_hg19.bam	Illumina	.	GATA4	NM_002052	exon4	c.C796T	p.R266X	GCCTCCCGC[C/T]GAGTGGGCCT	.	20	10	0.500	30	0	0.000	.	.	Success	602	310	0.514950166	772	1	0.001295337	0	310	0	0	0	1	0	0
OR52I1	390037	NCI	37	11	4615305	4615305	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PALJIP-02A-01D	TARGET-50-PALJIP-11A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PALJIP-11A-01D_hg19.bam	Illumina	.	OR52I1	NM_001005169	exon1	c.C37T	p.P13S	ATGGAAACC[C/T]CTGCCTCCTT	.	113	42	0.372	129	0	0.000	.	.	Success	714	159	0.222689076	832	0	0	0	159	0	0	0	0	0	0
ERC1	23085	NCI	37	12	1137263	1137263	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PALJIP-02A-01D	TARGET-50-PALJIP-11A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PALJIP-11A-01D_hg19.bam	Illumina	.	ERC1	NM_178039	exon2	c.C194T	p.A65V	TAAATGCTG[C/T]CTATGCCACC	.	35	24	0.686	26	0	0.000	.	.	Success	431	175	0.406032483	976	1	0.00102459	0	175	0	0	0	1	0	0
PLCB2	5330	NCI	37	15	40587173	40587173	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PALJIP-02A-01D	TARGET-50-PALJIP-11A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PALJIP-11A-01D_hg19.bam	Illumina	.	PLCB2	NM_004573	exon18	c.G1870A	p.G624R	TCTGGCATC[C/T]AGCATTCCAG	.	120	35	0.292	99	0	0.000	.	.	Success	129	12	0.093023256	219	0	0	0	12	0	0	0	0	0	0
DNAJA3	9093	NCI	37	16	4494664	4494664	+	Splice_site	SNP	G	G	A	novel	.	TARGET-50-PALJIP-02A-01D	TARGET-50-PALJIP-11A-01D	G	G	G	A	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PALJIP-11A-01D_hg19.bam	Illumina	.	DNAJA3	.	.	.	.	TCCCTTGTA[G/A]GAGTCGAGGA	.	57	18	0.316	28	0	0.000	.	.	Success	124	16	0.129032258	165	0	0	16	0	0	0	0	0	0	0
ATF7IP2	80063	NCI	37	16	10575730	10575730	+	Missense_Mutation	SNP	A	A	T	novel	.	TARGET-50-PALJIP-02A-01D	TARGET-50-PALJIP-11A-01D	A	A	A	T	A	A	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PALJIP-11A-01D_hg19.bam	Illumina	.	ATF7IP2	NM_001256160	exon12	c.A1606T	p.N536Y	CTCTCCCAG[A/T]ACCACCAGCA	.	247	73	0.296	156	0	0.000	.	.	Success	186	26	0.139784946	447	1	0.002237136	0	26	0	0	0	1	0	1
GALNS	2588	NCI	37	16	88908376	88908376	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PALJIP-02A-01D	TARGET-50-PALJIP-11A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PALJIP-11A-01D_hg19.bam	Illumina	.	GALNS	NM_000512	exon3	c.G248A	p.R83K	AGTGCCGCC[C/T]TCGCTATGTG	.	80	33	0.412	38	0	0.000	.	.	Success	478	58	0.121338912	862	1	0.001160093	0	58	0	0	0	1	0	0
TEKT1	83659	NCI	37	17	6719183	6719183	+	Missense_Mutation	SNP	C	C	T	rs147366277	.	TARGET-50-PALJIP-02A-01D	TARGET-50-PALJIP-11A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PALJIP-11A-01D_hg19.bam	Illumina	.	TEKT1	NM_053285	exon4	c.G455A	p.R152H	TCCAAGGTA[C/T]GGGTCAGCAG	.	49	25	0.510	42	0	0.000	.	.	Success	344	74	0.215116279	362	0	0	0	74	0	0	0	0	0	0
MYCBPAP	84073	NCI	37	17	48595975	48595975	+	Missense_Mutation	SNP	C	C	A	novel	.	TARGET-50-PALJIP-02A-01D	TARGET-50-PALJIP-11A-01D	C	C	C	A	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PALJIP-11A-01D_hg19.bam	Illumina	.	MYCBPAP	NM_032133	exon5	c.C671A	p.A224D	AGCAAAAAG[C/A]CCCAAAAGAA	.	99	35	0.354	77	0	0.000	.	.	Success	524	78	0.148854962	867	3	0.003460208	78	1	0	0	3	1	0	1
ZNF804A	91752	NCI	37	2	185801670	185801670	+	Missense_Mutation	SNP	G	G	C	novel	.	TARGET-50-PALJIP-02A-01D	TARGET-50-PALJIP-11A-01D	G	G	G	C	G	G	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PALJIP-11A-01D_hg19.bam	Illumina	.	ZNF804A	NM_194250	exon4	c.G1547C	p.S516T	TTGGAAGTA[G/C]CAAAAATAAA	.	63	13	0.206	71	0	0.000	.	.	Success	148	24	0.162162162	165	0	0	0	0	24	0	0	0	0	0
RUFY1	80230	NCI	37	5	178994562	178994562	+	Missense_Mutation	SNP	A	A	C	novel	.	TARGET-50-PALJIP-02A-01D	TARGET-50-PALJIP-11A-01D	A	A	A	C	A	A	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PALJIP-11A-01D_hg19.bam	Illumina	.	RUFY1	NM_025158	exon4	c.A703C	p.S235R	CATCTCTTA[A/C]GGTATTTCAT	.	162	64	0.395	192	0	0.000	.	.	Success	744	141	0.189516129	1187	0	0	0	0	141	0	0	0	0	2
TFAP2A	7020	NCI	37	6	10398804	10398804	+	Missense_Mutation	SNP	C	C	T	novel	.	TARGET-50-PALJIP-02A-01D	TARGET-50-PALJIP-11A-01D	C	C	C	T	C	C	Unknown	Valid	Somatic	.	Capture	454	.	TARGET-50-PALJIP-11A-01D_hg19.bam	Illumina	.	TFAP2A	NM_003220	exon7	c.G1160A	p.G387D	GCGGGGCTG[C/T]CGAAGCCGTG	.	63	13	0.206	22	0	0.000	.	.	Success	633	67	0.105845182	714	1	0.00140056	0	67	0	0	0	1	0	0
