Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	1	3208470	184404593	90110	0.0489
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	1	184406574	184408696	3	-1.2579
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	1	184414580	245880329	38779	0.0489
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	2	474222	82240109	47305	-0.2311
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	2	82241881	105512739	8300	0.0433
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	2	105512807	105518536	2	-1.4572
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	2	105518684	198987616	49647	0.0316
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	2	198989268	199167735	107	-0.2406
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	2	199170142	242124735	25735	0.0277
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	3	526235	41102219	23264	-0.2334
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	3	41102364	41102610	3	-1.8498
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	3	41104517	44975326	2020	-0.2195
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	3	44979567	44981374	3	-2.2061
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	3	44986121	108864712	32865	-0.2372
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	3	108865033	108865092	2	-2.8496
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	3	108872594	181601364	39160	-0.263
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	3	181602064	181642527	22	0.3194
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	3	181643192	181704646	27	-0.1831
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	3	181707810	183330037	785	0.0879
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	3	183334766	189399589	3240	0.3469
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	3	189402652	194327355	3079	-0.2304
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	3	194334057	195549435	721	-0.698
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	3	195549462	195549750	2	-2.9725
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	3	195551525	199023074	977	-0.6839
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	4	1043934	170272665	93203	0.0584
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	4	170272957	172397969	1148	-0.2678
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	4	172398805	174894426	1255	0.06
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	4	174895669	174895914	2	-0.9085
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	4	174896078	181333381	3446	0.0708
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	4	181336367	182598900	605	-0.3054
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	4	182599296	182897434	247	0.0571
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	4	182898629	182899813	4	-1.4631
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	4	182900149	187014501	1567	0.0445
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	4	187015213	189836143	1162	-0.3244
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	5	967233	148267289	80494	0.0472
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	5	148267356	148267370	2	-1.6566
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	5	148271611	173883635	16877	0.0397
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	5	173885246	173887175	5	-0.6833
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	5	173890994	180293075	3007	0.033
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	6	959281	170745844	96285	-0.2526
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	7	671810	92414148	46777	0.0653
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	7	92415696	92416205	2	-1.1912
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	7	92417116	147053452	28878	0.0866
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	7	147055327	149517418	1213	0.3152
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	7	149520776	158077879	4350	0.0666
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	607667	67134755	35739	0.0439
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	67136349	67152489	9	0.5271
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	67155511	68840764	819	0.0501
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	68841802	70245342	938	0.3224
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	70251659	70561921	192	0.0234
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	70563933	71116908	385	0.2994
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	71117230	71117388	4	-0.4754
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	71123715	84729296	7742	0.3256
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	84735533	84781217	26	0.0312
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	84783163	84862403	49	0.2734
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	84867791	86910456	932	0.0349
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	86910517	86927359	31	0.283
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	86927516	86933883	14	-0.102
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	86934577	91595385	2585	0.3211
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	91598393	112921048	11960	0.5417
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	112921466	114894333	1042	0.8676
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	114895651	115167952	157	0.559
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	115168076	115176656	4	1.1705
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	115178784	119629036	2690	0.5467
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	119636158	120086884	335	0.8717
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	120090218	120090230	2	-0.4303
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	120090345	120480257	284	0.8804
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	120483729	121154689	446	0.5653
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	121162576	142395627	14590	0.3213
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	142398592	144466486	293	0.0451
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	144470711	144509334	17	-0.2898
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	8	144509422	145304484	171	-0.7631
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	9	779932	12647532	6257	-0.1984
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	9	12649691	12915848	196	0.0745
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	9	12965635	20433347	5963	-0.1996
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	9	20443635	20615228	114	0.071
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	9	20615875	26247238	3584	-0.1864
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	9	26423917	140058573	51789	0.0545
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	10	405240	39103961	26092	0.3361
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	10	39104006	135075077	54658	0.0458
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	11	446120	16582287	9885	0.039
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	11	16593899	16594618	6	-0.7464
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	11	16602664	50011906	20591	0.0414
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	11	55770374	59021935	1817	0.2804
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	11	59030246	59747600	416	0.0658
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	11	59753033	133647740	44456	0.2891
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	12	760163	24286469	13704	0.0513
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	12	24286489	24286539	2	-1.2198
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	12	24288211	38822328	6556	0.0456
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	12	38830949	131671419	53521	-0.2879
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	13	18348806	74142242	31811	0.0395
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	13	74147459	74147705	3	-1.6931
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	13	74150663	114005560	24774	0.0433
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	14	19571208	49804881	15387	0.0532
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	14	49805702	52138672	1632	-0.225
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	14	52138840	52435566	148	0.0409
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	14	52435718	52539384	59	-0.2315
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	14	52540215	53652937	722	0.0389
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	14	53654997	57367198	2497	-0.2417
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	14	57370582	57370756	2	-1.7174
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	14	57370924	60015984	1626	-0.2345
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	14	60018071	60103742	54	0.0269
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	14	60106636	60148134	20	-0.2453
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	14	60152300	61403288	722	0.0619
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	14	61410767	61795029	258	0.2695
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	14	61796753	62261229	324	0.0484
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	14	62261680	72645476	6205	-0.2384
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	14	72649353	80944626	5213	0.0431
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	14	80946712	81584922	395	-0.266
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	14	81588083	82660464	728	0.0406
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	14	82660503	83435801	516	-0.2609
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	14	83442581	105059083	12852	0.0488
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	15	21238778	95366436	42089	0.0191
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	15	95367858	95368339	2	-1.3431
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	15	95375605	99701830	2401	-0.0184
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	16	593460	87907437	40801	0.0363
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	17	933971	4546406	1566	0.0479
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	17	4546630	4558625	4	-0.8848
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	17	4561847	78510305	35356	0.0458
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	18	319586	75210228	42614	0.0502
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	19	235018	23844832	8956	0.0486
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	19	32932334	63570038	14923	-0.2521
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	20	403764	61690281	37205	0.0321
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	21	14269492	40030894	16606	0.0378
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	21	40032152	40037398	2	-2.4266
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	21	40040513	46503202	3950	0.0364
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	22	15803930	47717016	16892	0.0395
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	X	3167107	66549362	25248	0.3031
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	X	66663468	72752158	2505	-0.0281
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	X	72756820	82128283	3441	-0.3454
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	X	82128598	82131996	5	0.4135
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	X	82133119	103844477	8888	-0.3703
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	X	103844689	103847705	2	-2.6329
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	X	103848364	107758944	1685	-0.3782
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_B01_1439056	X	107907140	154558783	21345	-0.1038
