Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	3208470	4751125	1031	0.0367
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	4752928	26350980	11429	-0.4213
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	26366019	26367885	2	-2.389
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	26368156	27394617	353	-0.4397
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	27395449	27577477	67	0.0685
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	27580869	29209920	627	-0.3778
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	29210547	29559763	158	0.0545
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	29561860	29564209	2	-1.5928
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	29564989	46482974	9102	0.0397
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	46483375	50967736	2449	-0.4198
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	50977160	51226467	34	-0.8914
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	51229298	52198541	396	-0.3873
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	52202070	245880329	103216	0.0305
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	2	474222	242124735	131156	0.0238
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	3	526235	100557676	53588	0.0236
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	3	100558608	100558709	2	-2.1086
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	3	100561401	199023074	52666	0.0253
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	1043934	1748599	223	-0.4372
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	1761816	3502864	758	0.522
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	3505800	8756821	3304	0.2386
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	9205016	11391730	1747	0.6328
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	11392487	47763583	22088	0.1823
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	52393514	56365968	2659	0.9535
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	56370353	56373822	2	-0.2411
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	56374997	58024140	974	0.9575
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	58026390	67339834	5063	0.0167
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	67340073	67340155	2	-1.4864
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	67340685	100540388	18008	0.0183
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	100540466	100540543	2	-1.4843
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	100541468	189836143	47822	0.0234
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	5	967233	22480237	13048	0.0233
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	5	22481551	22481876	2	-2.3291
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	5	22486651	180293075	87341	0.0267
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	6	959281	148888698	83459	0.028
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	6	148891122	148893002	3	-1.6229
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	6	148893030	170745844	12914	0.039
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	7	671810	44944875	25431	0.3522
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	7	44950539	47161008	1567	2.7574
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	7	47174447	54775817	5174	0.0117
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	7	54777429	54872844	81	2.6011
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	7	54873168	55049669	102	3.0471
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	7	55049912	55370519	391	2.7461
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	7	55371353	75275621	5379	0.3137
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	7	75276699	75277632	3	-0.9351
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	7	75279698	158077879	43134	0.3422
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	8	607667	2097637	741	0.0278
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	8	2098357	2101199	12	-0.7984
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	8	2694603	145304484	80687	0.0211
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	9	779932	19712121	11837	-0.4043
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	9	19712760	22439925	1885	-1.0717
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	9	22445518	24269359	1200	-0.4082
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	9	24273658	24340021	32	-0.0529
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	9	24340134	27701197	2014	-0.4226
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	9	27701270	27787134	70	0.0582
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	9	27800414	27815454	18	-0.4512
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	9	27818906	28101578	234	0.0109
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	9	28114442	31315789	1362	-0.3979
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	9	31319526	36788742	3174	0.0288
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	9	36790626	38737688	1400	-0.4264
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	9	70228864	140058573	44600	0.027
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	10	405240	29684684	20198	-0.4261
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	10	29690525	29697279	4	-2.0287
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	10	29697354	135075077	60339	-0.4157
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	11	446120	78449282	41406	0.0264
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	11	78449299	78663621	186	-0.3857
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	11	78664406	126419517	30751	0.0282
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	11	126421884	126455531	30	0.347
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	11	126455705	133647740	4763	0.0395
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	12	760163	131671419	73863	0.0256
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	13	18348806	114005560	56479	-0.4038
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	14	19571208	105059083	49367	0.0267
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	15	21238778	37826379	8143	0.0308
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	15	37835829	37845384	3	-1.5743
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	15	37845785	62765748	15103	0.0354
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	15	62772251	62846704	32	0.3483
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	15	62846723	66315182	2008	0.0334
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	15	66322296	66325115	2	-2.0734
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	15	66325450	99701830	19209	0.0323
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	16	593460	19574803	8619	0.0198
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	16	19575433	19601367	17	-0.7872
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	16	19602447	86074926	31705	0.0272
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	16	86075545	86075601	2	1.6209
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	16	86076300	87907437	455	0.0453
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	933971	33183935	14542	-0.0301
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	33186381	39108463	2511	-0.3883
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	39109982	39565277	239	0.0419
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	39567532	40555430	419	-0.3865
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	40560926	40603740	16	-0.0484
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	40604364	40618114	5	0.4023
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	40627660	40737448	55	-5e-04
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	40738883	44587223	1232	-0.3999
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	44589506	47487662	1502	0.0265
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	47491270	53221329	3817	0.3688
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	53225277	53228881	2	-0.9618
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	53229315	53798942	323	0.4996
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	53802731	56674114	1258	0.2717
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	56677701	57590022	484	0.0485
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	57590079	58093591	197	0.3186
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	58093683	58346088	129	-0.036
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	58346120	58826552	202	0.2833
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	58827057	59025323	92	-0.0128
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	59025557	59427021	165	0.3018
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	59431324	70947820	6682	0.5377
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	70951826	70971150	14	1.0335
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	70973512	71639005	239	0.4939
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	71650154	78510305	2780	-0.4146
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	18	319586	75121491	42580	0.0355
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	18	75121541	75121765	2	-2.2759
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	18	75122047	75210228	40	0.0858
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	19	235018	32932349	8973	0.3225
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	19	32935033	49111135	8905	0.0174
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	19	49115821	49225321	102	0.3339
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	19	49225966	54389613	2219	0.0263
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	19	54390325	54521637	63	0.3159
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	19	54530987	59409920	1682	0.0177
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	19	59541275	59642014	28	0.3951
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	19	59642036	63570038	1940	0.0261
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	20	403764	16813943	10501	0.0332
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	20	16814777	16815406	2	1.5195
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	20	16815425	33605368	8368	0.0243
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	20	33606506	33613687	2	-1.5937
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	20	33618155	61690281	18326	0.0353
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	21	14269492	46503202	20567	0.0278
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	22	15803930	47717016	16889	0.0378
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	X	3167107	147739611	60877	0.0093
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	X	147787094	147878292	81	-0.3788
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	X	147883401	154558783	2209	0.0114
