Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	3218610	4851265	1031	0.0367
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	4853068	26478393	11427	-0.4214
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	26493432	26495298	2	-2.389
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	26495569	27522030	353	-0.4397
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	27522862	27704890	67	0.0685
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	27708282	29337333	627	-0.3778
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	29337960	29687176	158	0.0545
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	29689273	29691622	2	-1.5928
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	29692402	46710387	9102	0.0397
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	46710788	51195148	2449	-0.4198
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	51204572	51453879	34	-0.8914
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	51456710	52425953	396	-0.3873
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	1	52429482	247813706	103273	0.0305
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	2	484222	242476062	131148	0.0238
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	3	2212571	99074986	53582	0.0236
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	3	99075918	99076019	2	-2.1086
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	3	99078711	197538677	52666	0.0254
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	1053934	1778801	223	-0.4372
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	1792018	3533066	758	0.522
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	3536002	8705921	3304	0.2386
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	9595918	11782632	1748	0.6324
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	11783389	48068826	22087	0.1823
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	52698757	55102559	1410	0.9727
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	55102958	55141055	76	0.7384
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	55141293	55151401	20	1.0941
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	55152040	55159408	36	0.704
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	55159424	55206044	37	1.0228
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	55213155	55219285	9	0.4774
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	55221801	56671211	1070	0.9509
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	56675596	56679065	2	-0.2411
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	56680240	58329383	974	0.9575
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	58331633	67657239	5061	0.0166
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	67657478	67657560	2	-1.4864
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	67658090	100321365	18011	0.0184
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	100321443	100321520	2	-1.4843
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	4	100322445	188763651	47827	0.0234
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	5	914233	22444480	13050	0.0233
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	5	22445794	22446119	2	-2.3291
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	5	22450894	180360469	87339	0.0267
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	6	1014281	148847005	83468	0.028
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	6	148849429	148851309	3	-1.6229
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	6	148851337	170903919	12914	0.039
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	7	705284	44978350	25432	0.3522
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	7	44984014	47194483	1566	2.757
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	7	47207922	54808323	5173	0.0117
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	7	54809935	54905350	81	2.6011
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	7	54905674	55082175	102	3.0471
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	7	55082418	55403025	391	2.7461
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	7	55403859	75437685	5380	0.3136
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	7	75438763	75439696	3	-0.9351
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	7	75441762	158385118	43135	0.3421
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	8	617667	2110230	742	0.0276
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	8	2110950	2113792	12	-0.7984
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	8	2707196	145232496	80693	0.021
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	9	789932	19722121	11839	-0.4042
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	9	19722760	22449925	1885	-1.0717
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	9	22455518	24279359	1199	-0.4083
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	9	24283658	24350021	32	-0.0529
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	9	24350134	27711197	2014	-0.4226
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	9	27711270	27797134	70	0.0582
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	9	27810414	27825454	18	-0.4512
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	9	27828906	28111578	234	0.0109
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	9	28124442	31325789	1364	-0.3973
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	9	31329526	36798742	3177	0.0294
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	9	36800626	38747688	1400	-0.4264
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	9	71039044	140938752	44606	0.027
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	10	415240	29644678	20198	-0.4261
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	10	29650519	29657273	4	-2.0287
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	10	29657348	135225087	60337	-0.4157
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	11	456120	78771634	41403	0.0264
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	11	78771651	78985973	186	-0.3857
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	11	78986758	126914307	30744	0.0282
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	11	126916674	126950321	30	0.347
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	11	126950495	134142530	4763	0.0395
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	12	889902	133161346	73858	0.0257
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	13	19450806	114987458	56475	-0.4038
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	14	20501368	105988038	49365	0.0267
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	15	23687685	40039087	8144	0.0308
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	15	40048537	40058092	3	-1.5743
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	15	40058493	64978695	15101	0.0354
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	15	64985198	65059651	32	0.3483
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	15	65059670	68528128	2008	0.0334
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	15	68535242	68538061	2	-2.0734
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	15	68538396	101884307	19208	0.0323
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	16	653459	19667302	8619	0.0198
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	16	19667932	19693866	17	-0.7872
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	16	19694946	87517425	31640	0.0271
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	16	87518044	87518100	2	1.6209
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	16	87518799	89379936	455	0.0453
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	987221	36109822	14542	-0.0301
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	36112268	41752937	2509	-0.3883
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	41754456	42209751	239	0.0419
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	42212006	43199904	419	-0.3865
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	43205400	43247957	16	-0.0484
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	43248581	43262331	5	0.4023
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	43271877	43381665	55	-5e-04
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	43383100	47232224	1234	-0.3998
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	47234507	50132663	1502	0.0265
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	50136271	55866330	3817	0.3687
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	55870278	55873882	2	-0.9618
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	55874316	56443943	323	0.4996
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	56447732	59319332	1258	0.2717
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	59322919	60235240	484	0.0485
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	60235297	60739859	197	0.3186
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	60739951	60992356	129	-0.036
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	60992388	61472820	202	0.2833
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	61473325	61671591	92	-0.0128
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	61671825	62073289	165	0.3018
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	62077592	73436225	6682	0.5377
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	73440231	73459555	14	1.0335
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	73461917	74127410	239	0.4939
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	17	74138559	80917016	2780	-0.4146
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	18	329586	77020503	42577	0.0355
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	18	77020553	77020777	2	-2.2759
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	18	77021059	77109240	40	0.0858
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	19	284018	28240509	8973	0.3225
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	19	28243193	44419295	8905	0.0174
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	19	44423981	44533481	102	0.3339
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	19	44534126	49697801	2219	0.0263
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	19	49698513	49829825	63	0.3159
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	19	49839175	54718108	1682	0.0177
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	19	54849463	54950202	28	0.3951
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	19	54950224	58878226	1940	0.0261
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	20	455764	16865943	10504	0.0332
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	20	16866777	16867406	2	1.5195
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	20	16867425	34141954	8368	0.0243
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	20	34143092	34150273	2	-1.5937
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	20	34154741	62219837	18326	0.0353
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	21	15347621	47678774	20566	0.0278
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	22	17423930	49331012	16888	0.0378
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	X	3157107	147931919	60894	0.0091
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	X	147979403	148070586	81	-0.3788
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_C09_1438940	X	148075695	154905589	2209	0.0112
