Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	1	3208470	5676848	1706	0.0104
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	1	5682078	5687466	2	-1.2004
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	1	5687940	53792778	24903	0.0229
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	1	53793130	53798832	2	-1.1384
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	1	53800140	165883462	51819	0.0371
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	1	165884323	165884373	2	-1.3969
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	1	165885957	177637207	7329	0.0364
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	1	177638018	177639165	2	-1.3912
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	1	177641820	245880329	43187	0.0127
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	2	474222	163199542	85816	0.0079
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	2	163202896	163202964	3	-0.8403
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	2	163205189	228619134	37515	0.0511
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	2	228619147	228619921	7	-0.5121
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	2	228620110	242124735	7839	1e-04
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	3	526235	25713237	14026	0.0321
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	3	25719472	25720364	2	-1.0425
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	3	25721029	80034468	31790	0.0414
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	3	80042430	80042442	2	-1.4764
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	3	80042584	96982645	5965	0.0252
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	3	96983128	96989317	3	-0.9014
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	3	96991354	108864712	6437	0.0332
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	3	108865033	108865092	2	-1.1388
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	3	108872594	159627705	28275	0.0475
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	3	159629421	159632665	2	-1.1231
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	3	159636707	199023074	19794	0.0482
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	4	1043934	189836143	102666	0.0292
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	967233	6080902	3564	-0.0437
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	6081074	6081190	3	0.7908
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	6081250	6390241	253	-0.0167
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	6390360	11386501	3609	-0.2015
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	11388373	90139582	40668	0.0225
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	90145887	95000024	2423	-0.1668
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	95001015	95003410	4	-0.8217
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	95003757	115809787	11018	-0.167
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	115811452	115813815	2	-1.4584
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	115814156	167329267	31321	-0.1652
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	167329587	167329617	2	-1.6653
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	167330118	178575166	6691	-0.1703
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	178576175	178576188	2	-1.6735
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	178576346	180293075	845	0.0013
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	6	959281	69245762	37496	0.0307
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	6	69246326	90765642	12127	-0.2262
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	6	90770775	90775471	2	-1.674
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	6	90775980	119676917	16051	-0.2225
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	6	119677438	119677493	2	-1.6622
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	6	119681611	129864530	5907	-0.2512
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	6	129865304	129865338	2	-1.389
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	6	129866299	134781411	3310	-0.2481
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	6	134782362	134782453	2	-1.8627
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	6	134782477	140748227	3816	-0.2495
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	6	140751586	140783842	19	-1.5653
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	6	140784762	170745844	17650	-0.247
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	7	671810	158077879	81249	0.0504
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	8	607667	104326240	56966	0.032
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	8	104343938	104362841	16	-0.8331
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	8	104365274	121074924	9354	0.0251
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	8	121079005	121089347	15	0.4699
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	8	121093335	145304484	15116	0.0205
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	9	779932	2909044	1464	0.4526
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	9	2910098	14562531	6293	0.1694
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	9	14563052	29140520	9874	-0.1622
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	9	29142300	140058573	50296	0.0379
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	10	405240	55759269	32038	0.0394
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	10	55761478	55761550	2	-1.1251
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	10	55763077	116626434	36824	0.0425
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	10	116633085	116633834	2	-1.2105
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	10	116634131	135075077	11904	0.0097
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	11	446120	16582287	9888	0.0355
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	11	16593899	16594618	6	-0.8431
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	11	16602664	46880812	19528	0.0382
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	11	46884921	46894161	4	-0.9322
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	11	46894373	133647740	47770	0.1919
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	12	760163	8056684	4165	0.4224
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	12	8057019	9879652	698	-0.1203
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	12	9882363	18117967	4947	0.1201
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	12	18118263	18274068	107	0.5585
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	12	18279212	18279994	13	0.2152
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	12	18280194	22161851	2385	0.5503
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	12	22164838	23822434	1076	0.0978
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	12	23826011	24394117	407	0.5718
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	12	24395552	32109555	4903	0.0716
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	12	32109617	131671419	55145	-0.263
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	13	18348806	96460024	45274	-0.0079
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	13	96460054	96461542	4	-1.0418
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	13	96465202	114005560	11339	0.0024
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	14	19571208	20107188	332	-0.1528
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	14	20108546	20112057	2	-1.3548
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	14	20112802	30124359	4873	-0.1436
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	14	30128187	30131204	2	-1.6271
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	14	30136032	95659113	39046	-0.1439
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	14	95659936	95661787	2	-1.4154
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	14	95662644	98550807	2039	-0.1582
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	14	98551227	98554008	4	-1.0209
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	14	98554098	105059083	3081	-0.1651
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	15	21238778	61053257	22297	0.0284
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	15	61054989	61056153	2	-1.2553
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	15	61057755	99701830	22195	0.0167
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	16	593460	7686940	3133	0.024
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	16	7686973	7687730	2	-1.4779
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	16	7687800	72290104	27202	0.0262
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	16	72292643	72293676	2	-2.2677
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	16	72295945	87907437	10480	0.0223
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	17	933971	78510305	36944	0.0371
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	18	319586	38201174	21030	0.0278
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	18	38203479	38204956	2	-1.3185
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	18	38208130	65058636	16629	0.03
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	18	65060058	65060131	2	-1.1182
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	18	65063556	74761396	4715	0.0182
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	18	74773850	75210228	248	-0.1925
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	19	235018	1071329	154	-0.0316
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	19	1074378	1074540	2	-1.1582
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	19	1078720	63570038	23763	0.0127
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	20	403764	61690281	37225	0.0205
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	21	14269492	46503202	20564	0.0169
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	22	15803930	47717016	16896	0.0203
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	X	3167107	44880038	18408	-0.3576
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	X	44884518	47970583	1482	0.3821
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	X	47975500	125468252	30323	0.1385
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	X	125471103	125471980	2	-2.2346
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	X	125475586	154558783	12585	0.1426
