Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	1	3218610	5754261	1706	0.0104
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	1	5759491	5764879	2	-1.2004
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	1	5765353	54020190	24900	0.0229
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	1	54020542	54026244	2	-1.1384
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	1	54027552	167616838	51879	0.0372
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	1	167617699	167617749	2	-1.3969
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	1	167619333	179370584	7329	0.0364
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	1	179371395	179372542	2	-1.3912
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	1	179375197	247813706	43185	0.0127
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	2	484222	163491296	85805	0.0079
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	2	163494650	163494718	3	-0.8403
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	2	163496943	228910890	37517	0.0511
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	2	228910903	228911677	7	-0.5121
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	2	228911866	242476062	7840	1e-04
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	3	2212571	25738233	14025	0.032
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	3	25744468	25745360	2	-1.0425
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	3	25746025	79951778	31788	0.0414
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	3	79959740	79959752	2	-1.4764
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	3	79959894	95499955	5963	0.0251
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	3	95500438	95506627	3	-0.9014
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	3	95508664	107382022	6437	0.0332
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	3	107382343	107382402	2	-1.1388
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	3	107389904	158145011	28274	0.0475
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	3	158146727	158149971	2	-1.1231
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	3	158154013	197538677	19794	0.0482
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	4	1053934	188763651	102671	0.0292
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	914233	6027902	3565	-0.0437
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	6028074	6028190	3	0.7908
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	6028250	6337241	253	-0.0167
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	6337360	11333501	3610	-0.2013
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	11335373	90103826	40667	0.0225
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	90110131	94974268	2423	-0.1666
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	94975259	94977654	4	-0.8217
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	94978001	115781888	11017	-0.1669
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	115783553	115785916	2	-1.4584
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	115786257	167396689	31321	-0.1652
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	167397009	167397039	2	-1.6653
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	167397540	178642560	6691	-0.1703
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	178643569	178643582	2	-1.6735
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	5	178643740	180360469	845	0.0013
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	6	1014281	69189041	37499	0.0307
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	6	69189605	90708921	12126	-0.2261
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	6	90714054	90718750	2	-1.674
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	6	90719259	119635218	16054	-0.2225
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	6	119635739	119635794	2	-1.6622
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	6	119639912	129822837	5909	-0.2511
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	6	129823611	129823645	2	-1.389
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	6	129824606	134739718	3310	-0.2481
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	6	134740669	134740760	2	-1.8627
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	6	134740784	140706534	3816	-0.2495
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	6	140709893	140742149	19	-1.5653
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	6	140743069	170903919	17652	-0.247
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	7	705284	158385118	81250	0.0504
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	8	617667	104257064	56970	0.032
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	8	104274762	104293665	16	-0.8331
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	8	104296098	121005743	9358	0.0252
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	8	121009824	121020166	15	0.4699
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	8	121024154	145232496	15115	0.0204
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	9	789932	2919044	1464	0.4526
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	9	2920098	14572531	6294	0.1694
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	9	14573052	29150520	9874	-0.1622
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	9	29152300	140938752	50307	0.0379
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	10	415240	56089263	32038	0.0393
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	10	56091472	56091544	2	-1.1251
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	10	56093071	116636444	36822	0.0425
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	10	116643095	116643844	2	-1.2105
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	10	116644141	135225087	11904	0.0097
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	11	456120	16625711	9887	0.0355
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	11	16637323	16638042	6	-0.8431
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	11	16646088	46924236	19525	0.0382
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	11	46928345	46937585	4	-0.9322
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	11	46937797	134142530	47764	0.1919
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	12	889902	8165417	4165	0.4223
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	12	8165752	9988385	697	-0.1204
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	12	9991096	18226700	4945	0.1201
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	12	18226996	18382801	107	0.5585
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	12	18387945	18388727	13	0.2152
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	12	18388927	22270584	2385	0.5503
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	12	22273571	23931167	1076	0.0978
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	12	23934744	24502850	407	0.5718
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	12	24504285	32218288	4903	0.0716
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	12	32218350	56029584	9922	-0.2709
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	12	56030092	56031273	2	-1.3821
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	12	56031704	133161346	45219	-0.2613
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	13	19450806	97662023	45270	-0.0079
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	13	97662053	97663541	4	-1.0418
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	13	97667201	114987458	11339	0.0024
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	14	20501368	21037348	332	-0.1528
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	14	21038706	21042217	2	-1.3548
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	14	21042962	31054608	4873	-0.1436
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	14	31058436	31061453	2	-1.6271
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	14	31066281	96589360	39044	-0.144
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	14	96590183	96592034	2	-1.4154
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	14	96592891	99481054	2039	-0.1582
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	14	99481474	99484255	4	-1.0209
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	14	99484345	105988038	3081	-0.1651
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	15	23687685	63266204	22296	0.0284
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	15	63267936	63269100	2	-1.2553
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	15	63270702	101884307	22194	0.0167
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	16	653459	7746939	3133	0.024
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	16	7746972	7747729	2	-1.4779
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	16	7747799	73732603	27137	0.026
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	16	73735142	73736175	2	-2.2677
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	16	73738444	89379936	10480	0.0223
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	17	987221	80917016	36944	0.0371
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	18	329586	39947176	21030	0.0278
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	18	39949481	39950958	2	-1.3185
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	18	39954132	66907656	16626	0.03
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	18	66909078	66909151	2	-1.1182
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	18	66912576	76660408	4715	0.0182
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	18	76672862	77109240	248	-0.1925
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	19	284018	1120329	154	-0.0316
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	19	1123378	1123540	2	-1.1582
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	19	1127720	58878226	23763	0.0127
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	20	455764	62219837	37228	0.0205
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	21	15347621	47678774	20563	0.0169
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	22	17423930	49331012	16895	0.0203
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	X	3157107	44995094	18409	-0.3575
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	X	44999574	48085639	1482	0.3821
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	X	48090556	125640571	30341	0.1386
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	X	125643422	125644299	2	-2.2346
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_D05_1438930	X	125647905	154905589	12583	0.1427
