Source Name	Provider	Material Type	Term Source REF	Characteristics[Organism]	Term Source REF	Characteristics[Sex]	Term Source REF	Characteristics[DiseaseState]	Term Source REF	Comment[OCG Cohort]	Comment[Alternate ID]	Sample Name	Material Type	Term Source REF	Characteristics[OrganismPart]	Term Source REF	Description	Protocol REF	Performer	Extract Name	Material Type	Term Source REF	Comment[SRA_SAMPLE]	Protocol REF	Performer	Extract Name	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[LIBRARY_SELECTION]	Comment[LIBRARY_NAME]	Comment[SRA_EXPERIMENT]	Description	Protocol REF	Performer	Date	Assay Name	Technology Type	Term Source REF	Comment[SPOT_LENGTH]	Protocol REF	Parameter Value[Software Versions]	Protocol REF	Derived Array Data File	Comment[SRA_RUN]	Comment[SRA_FILE_URI]	Comment[OCG Data Level]	Comment[ASSEMBLY_NAME]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F09	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAA_NormalVsPrimary.png	4			
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F09	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAA_NormalVsPrimary.png	4			
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F09	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAA_NormalVsPrimary.png	4			
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F09	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F09	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F09	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F09	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F09	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F09	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F09	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F09	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F09	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F09	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F09	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F09	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00669-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F05	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAA_NormalVsPrimary.png	4			
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F05	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAA_NormalVsPrimary.png	4			
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F05	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAA_NormalVsPrimary.png	4			
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F05	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F05	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F05	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F05	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F05	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F05	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F05	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F05	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F05	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F05	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F05	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F05	SRX130178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-01A-01D GS00673-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21765-FS3_L01.bam	SRR446071	@dbgap@:reads/SRP012006/SRS118123/SRX130178/SRR446071/SRR446071.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F10	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAA_NormalVsPrimary.png	4			
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F10	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAA_NormalVsPrimary.png	4			
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F10	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAA_NormalVsPrimary.png	4			
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F10	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F10	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F10	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F10	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F10	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F10	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F10	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F10	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F10	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F10	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F10	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_F10	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00669-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E06	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAA_NormalVsPrimary.png	4			
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E06	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAA_NormalVsPrimary.png	4			
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E06	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAA_NormalVsPrimary.png	4			
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E06	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E06	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E06	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E06	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E06	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E06	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E06	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E06	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E06	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E06	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E06	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E06	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00673-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_F11	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAA_NormalVsPrimary.png	4			
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_F11	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAA_NormalVsPrimary.png	4			
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_F11	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAA_NormalVsPrimary.png	4			
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_F11	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_F11	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_F11	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_F11	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_F11	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_F11	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_F11	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_F11	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_F11	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_F11	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_F11	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_F11	SRX130177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAA-10A-01D GS00667-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20663-FS3_L01.bam	SRR446079	@dbgap@:reads/SRP012006/SRS118124/SRX130177/SRR446079/SRR446079.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAB-01A-01D A04159 library	PAIRED	GENOMIC	WGS	RANDOM	A04159	SRX100081		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2011-02-16	TARGET-50-CAAAAB-01A-01D A04159 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.7.48.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A04159-1..bam	SRR351135	@dbgap@:reads/SRP012006/SRS118125/SRX100081/SRR351135/SRR351135.sra	2	NCBI36	bcgsc.ca:Protocol:WGS-VariantCall:01	A04159_10_lanes_dupsFlagged.varFilter.anno1.maf.txt	3						
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G10	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAB_NormalVsPrimary.png	4			
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G10	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAB_NormalVsPrimary.png	4			
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G10	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAB_NormalVsPrimary.png	4			
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G10	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G10	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G10	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G10	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G10	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G10	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G10	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G10	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G10	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G10	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G10	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G10	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00667-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_G05	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAB_NormalVsPrimary.png	4			
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_G05	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAB_NormalVsPrimary.png	4			
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_G05	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAB_NormalVsPrimary.png	4			
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_G05	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_G05	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_G05	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_G05	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_G05	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_G05	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_G05	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_G05	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_G05	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_G05	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_G05	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_G05	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00673-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G09	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAB_NormalVsPrimary.png	4			
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G09	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAB_NormalVsPrimary.png	4			
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G09	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAB_NormalVsPrimary.png	4			
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G09	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G09	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G09	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G09	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G09	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G09	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G09	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G09	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G09	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G09	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G09	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G09	SRX130113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-01A-01D GS00669-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21232-FS3_L01.bam	SRR445974	@dbgap@:reads/SRP012006/SRS118125/SRX130113/SRR445974/SRR445974.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAB-11A-01D A04160 library	PAIRED	GENOMIC	WGS	RANDOM	A04160	SRX100082		bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2011-02-16	TARGET-50-CAAAAB-11A-01D A04160 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.7.48.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A04160-1..bam	SRR351145	@dbgap@:reads/SRP012006/SRS118126/SRX100082/SRR351145/SRR351145.sra	2	NCBI36	bcgsc.ca:Protocol:WGS-VariantCall:01	A04160_10_lanes_dupsFlagged.varFilter.anno1.maf.txt	3						
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F06	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAB_NormalVsPrimary.png	4			
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F06	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAB_NormalVsPrimary.png	4			
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F06	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAB_NormalVsPrimary.png	4			
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F06	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F06	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F06	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F06	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F06	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F06	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F06	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F06	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F06	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F06	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F06	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_F06	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00673-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G10	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAB_NormalVsPrimary.png	4			
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G10	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAB_NormalVsPrimary.png	4			
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G10	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAB_NormalVsPrimary.png	4			
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G10	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G10	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G10	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G10	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G10	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G10	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G10	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G10	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G10	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G10	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G10	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_G10	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00669-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G11	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAB_NormalVsPrimary.png	4			
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G11	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAB_NormalVsPrimary.png	4			
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G11	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAB_NormalVsPrimary.png	4			
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G11	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G11	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G11	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G11	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G11	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G11	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G11	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G11	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G11	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G11	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G11	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-11A-01D	DNA	EFO	SRS118126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_G11	SRX130112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAB-11A-01D GS00667-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20715-FS3_L01.bam	SRR445982	@dbgap@:reads/SRP012006/SRS118126/SRX130112/SRR445982/SRR445982.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A05	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAC_NormalVsPrimary.png	4			
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A05	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAC_NormalVsPrimary.png	4			
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A05	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAC_NormalVsPrimary.png	4			
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A05	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A05	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A05	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A05	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A05	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A05	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A05	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A05	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A05	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A05	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A05	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A05	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00673-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A10	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAC_NormalVsPrimary.png	4			
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A10	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAC_NormalVsPrimary.png	4			
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A10	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAC_NormalVsPrimary.png	4			
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A10	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A10	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A10	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A10	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A10	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A10	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A10	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A10	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A10	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A10	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A10	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A10	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00667-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_A09	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAC_NormalVsPrimary.png	4			
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_A09	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAC_NormalVsPrimary.png	4			
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_A09	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAC_NormalVsPrimary.png	4			
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_A09	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_A09	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_A09	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_A09	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_A09	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_A09	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_A09	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_A09	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_A09	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_A09	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_A09	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_A09	SRX130261		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-01A-01D GS00669-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20419-FS3_L01.bam	SRR446416	@dbgap@:reads/SRP012006/SRS118127/SRX130261/SRR446416/SRR446416.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A11	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAC_NormalVsPrimary.png	4			
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A11	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAC_NormalVsPrimary.png	4			
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A11	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAC_NormalVsPrimary.png	4			
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A11	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A11	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A11	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A11	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A11	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A11	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A11	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A11	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A11	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A11	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A11	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_A11	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00667-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_E09	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAC_NormalVsPrimary.png	4			
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_E09	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAC_NormalVsPrimary.png	4			
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_E09	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAC_NormalVsPrimary.png	4			
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_E09	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_E09	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_E09	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_E09	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_E09	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_E09	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_E09	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_E09	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_E09	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_E09	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_E09	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-10A-01D	DNA	EFO	SRS118128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_E09	SRX130260		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAC-10A-01D GS00677-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19841-FS3_L01.bam	SRR446424	@dbgap@:reads/SRP012006/SRS118128/SRX130260/SRR446424/SRR446424.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-01A-01D	DNA	EFO	SRS190103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C01	SRX149215		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41076-FS3_L01.bam	SRR500215	@dbgap@:reads/SRP012006/SRS190103/SRX149215/SRR500215/SRR500215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAH_NormalVsPrimary.png	4			
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-01A-01D	DNA	EFO	SRS190103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C01	SRX149215		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41076-FS3_L01.bam	SRR500215	@dbgap@:reads/SRP012006/SRS190103/SRX149215/SRR500215/SRR500215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAH_NormalVsPrimary.png	4			
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-01A-01D	DNA	EFO	SRS190103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C01	SRX149215		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41076-FS3_L01.bam	SRR500215	@dbgap@:reads/SRP012006/SRS190103/SRX149215/SRR500215/SRR500215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAH_NormalVsPrimary.png	4			
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-01A-01D	DNA	EFO	SRS190103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C01	SRX149215		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41076-FS3_L01.bam	SRR500215	@dbgap@:reads/SRP012006/SRS190103/SRX149215/SRR500215/SRR500215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAH_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-01A-01D	DNA	EFO	SRS190103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C01	SRX149215		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41076-FS3_L01.bam	SRR500215	@dbgap@:reads/SRP012006/SRS190103/SRX149215/SRR500215/SRR500215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-01A-01D	DNA	EFO	SRS190103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C01	SRX149215		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41076-FS3_L01.bam	SRR500215	@dbgap@:reads/SRP012006/SRS190103/SRX149215/SRR500215/SRR500215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-01A-01D	DNA	EFO	SRS190103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C01	SRX149215		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41076-FS3_L01.bam	SRR500215	@dbgap@:reads/SRP012006/SRS190103/SRX149215/SRR500215/SRR500215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-01A-01D	DNA	EFO	SRS190103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C01	SRX149215		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41076-FS3_L01.bam	SRR500215	@dbgap@:reads/SRP012006/SRS190103/SRX149215/SRR500215/SRR500215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-01A-01D	DNA	EFO	SRS190103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C01	SRX149215		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41076-FS3_L01.bam	SRR500215	@dbgap@:reads/SRP012006/SRS190103/SRX149215/SRR500215/SRR500215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-01A-01D	DNA	EFO	SRS190103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C01	SRX149215		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41076-FS3_L01.bam	SRR500215	@dbgap@:reads/SRP012006/SRS190103/SRX149215/SRR500215/SRR500215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-01A-01D	DNA	EFO	SRS190103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C01	SRX149215		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41076-FS3_L01.bam	SRR500215	@dbgap@:reads/SRP012006/SRS190103/SRX149215/SRR500215/SRR500215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-01A-01D	DNA	EFO	SRS190103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C01	SRX149215		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41076-FS3_L01.bam	SRR500215	@dbgap@:reads/SRP012006/SRS190103/SRX149215/SRR500215/SRR500215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-01A-01D	DNA	EFO	SRS190103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C01	SRX149215		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41076-FS3_L01.bam	SRR500215	@dbgap@:reads/SRP012006/SRS190103/SRX149215/SRR500215/SRR500215.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-01A-01D	DNA	EFO	SRS190103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C01	SRX149215		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41076-FS3_L01.bam	SRR500215	@dbgap@:reads/SRP012006/SRS190103/SRX149215/SRR500215/SRR500215.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-01A-01D	DNA	EFO	SRS190103	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C01	SRX149215		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-01A-01D GS00939-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41076-FS3_L01.bam	SRR500215	@dbgap@:reads/SRP012006/SRS190103/SRX149215/SRR500215/SRR500215.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-10A-01D	DNA	EFO	SRS190104	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B04	SRX149214		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41077-FS3_L01.bam	SRR500223	@dbgap@:reads/SRP012006/SRS190104/SRX149214/SRR500223/SRR500223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAH_NormalVsPrimary.png	4			
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-10A-01D	DNA	EFO	SRS190104	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B04	SRX149214		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41077-FS3_L01.bam	SRR500223	@dbgap@:reads/SRP012006/SRS190104/SRX149214/SRR500223/SRR500223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAH_NormalVsPrimary.png	4			
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-10A-01D	DNA	EFO	SRS190104	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B04	SRX149214		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41077-FS3_L01.bam	SRR500223	@dbgap@:reads/SRP012006/SRS190104/SRX149214/SRR500223/SRR500223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAH_NormalVsPrimary.png	4			
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-10A-01D	DNA	EFO	SRS190104	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B04	SRX149214		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41077-FS3_L01.bam	SRR500223	@dbgap@:reads/SRP012006/SRS190104/SRX149214/SRR500223/SRR500223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAH_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-10A-01D	DNA	EFO	SRS190104	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B04	SRX149214		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41077-FS3_L01.bam	SRR500223	@dbgap@:reads/SRP012006/SRS190104/SRX149214/SRR500223/SRR500223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-10A-01D	DNA	EFO	SRS190104	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B04	SRX149214		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41077-FS3_L01.bam	SRR500223	@dbgap@:reads/SRP012006/SRS190104/SRX149214/SRR500223/SRR500223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-10A-01D	DNA	EFO	SRS190104	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B04	SRX149214		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41077-FS3_L01.bam	SRR500223	@dbgap@:reads/SRP012006/SRS190104/SRX149214/SRR500223/SRR500223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-10A-01D	DNA	EFO	SRS190104	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B04	SRX149214		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41077-FS3_L01.bam	SRR500223	@dbgap@:reads/SRP012006/SRS190104/SRX149214/SRR500223/SRR500223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-10A-01D	DNA	EFO	SRS190104	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B04	SRX149214		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41077-FS3_L01.bam	SRR500223	@dbgap@:reads/SRP012006/SRS190104/SRX149214/SRR500223/SRR500223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-10A-01D	DNA	EFO	SRS190104	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B04	SRX149214		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41077-FS3_L01.bam	SRR500223	@dbgap@:reads/SRP012006/SRS190104/SRX149214/SRR500223/SRR500223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-10A-01D	DNA	EFO	SRS190104	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B04	SRX149214		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41077-FS3_L01.bam	SRR500223	@dbgap@:reads/SRP012006/SRS190104/SRX149214/SRR500223/SRR500223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-10A-01D	DNA	EFO	SRS190104	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B04	SRX149214		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41077-FS3_L01.bam	SRR500223	@dbgap@:reads/SRP012006/SRS190104/SRX149214/SRR500223/SRR500223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-10A-01D	DNA	EFO	SRS190104	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B04	SRX149214		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41077-FS3_L01.bam	SRR500223	@dbgap@:reads/SRP012006/SRS190104/SRX149214/SRR500223/SRR500223.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-10A-01D	DNA	EFO	SRS190104	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B04	SRX149214		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41077-FS3_L01.bam	SRR500223	@dbgap@:reads/SRP012006/SRS190104/SRX149214/SRR500223/SRR500223.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-10A-01D	DNA	EFO	SRS190104	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B04	SRX149214		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAH-10A-01D GS00939-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41077-FS3_L01.bam	SRR500223	@dbgap@:reads/SRP012006/SRS190104/SRX149214/SRR500223/SRR500223.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-01A-01D	DNA	EFO	SRS190107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B05	SRX204258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55432-FS3_L01.bam	SRR616361	@dbgap@:reads/SRP012006/SRS190107/SRX204258/SRR616361/SRR616361.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAL_NormalVsPrimary.png	4			
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-01A-01D	DNA	EFO	SRS190107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B05	SRX204258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55432-FS3_L01.bam	SRR616361	@dbgap@:reads/SRP012006/SRS190107/SRX204258/SRR616361/SRR616361.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAL_NormalVsPrimary.png	4			
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-01A-01D	DNA	EFO	SRS190107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B05	SRX204258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55432-FS3_L01.bam	SRR616361	@dbgap@:reads/SRP012006/SRS190107/SRX204258/SRR616361/SRR616361.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAL_NormalVsPrimary.png	4			
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-01A-01D	DNA	EFO	SRS190107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B05	SRX204258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55432-FS3_L01.bam	SRR616361	@dbgap@:reads/SRP012006/SRS190107/SRX204258/SRR616361/SRR616361.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAL_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-01A-01D	DNA	EFO	SRS190107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B05	SRX204258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55432-FS3_L01.bam	SRR616361	@dbgap@:reads/SRP012006/SRS190107/SRX204258/SRR616361/SRR616361.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-01A-01D	DNA	EFO	SRS190107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B05	SRX204258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55432-FS3_L01.bam	SRR616361	@dbgap@:reads/SRP012006/SRS190107/SRX204258/SRR616361/SRR616361.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-01A-01D	DNA	EFO	SRS190107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B05	SRX204258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55432-FS3_L01.bam	SRR616361	@dbgap@:reads/SRP012006/SRS190107/SRX204258/SRR616361/SRR616361.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-01A-01D	DNA	EFO	SRS190107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B05	SRX204258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55432-FS3_L01.bam	SRR616361	@dbgap@:reads/SRP012006/SRS190107/SRX204258/SRR616361/SRR616361.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-01A-01D	DNA	EFO	SRS190107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B05	SRX204258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55432-FS3_L01.bam	SRR616361	@dbgap@:reads/SRP012006/SRS190107/SRX204258/SRR616361/SRR616361.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-01A-01D	DNA	EFO	SRS190107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B05	SRX204258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55432-FS3_L01.bam	SRR616361	@dbgap@:reads/SRP012006/SRS190107/SRX204258/SRR616361/SRR616361.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-01A-01D	DNA	EFO	SRS190107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B05	SRX204258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55432-FS3_L01.bam	SRR616361	@dbgap@:reads/SRP012006/SRS190107/SRX204258/SRR616361/SRR616361.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-01A-01D	DNA	EFO	SRS190107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B05	SRX204258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55432-FS3_L01.bam	SRR616361	@dbgap@:reads/SRP012006/SRS190107/SRX204258/SRR616361/SRR616361.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-01A-01D	DNA	EFO	SRS190107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B05	SRX204258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55432-FS3_L01.bam	SRR616361	@dbgap@:reads/SRP012006/SRS190107/SRX204258/SRR616361/SRR616361.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-01A-01D	DNA	EFO	SRS190107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B05	SRX204258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55432-FS3_L01.bam	SRR616361	@dbgap@:reads/SRP012006/SRS190107/SRX204258/SRR616361/SRR616361.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-01A-01D	DNA	EFO	SRS190107	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B05	SRX204258		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-01A-01D GS01103-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55432-FS3_L01.bam	SRR616361	@dbgap@:reads/SRP012006/SRS190107/SRX204258/SRR616361/SRR616361.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-10A-01D	DNA	EFO	SRS190108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C05	SRX204257		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L03.bam	SRR616368	@dbgap@:reads/SRP012006/SRS190108/SRX204257/SRR616368/SRR616368.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAL_NormalVsPrimary.png	4			
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-10A-01D	DNA	EFO	SRS190108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C05	SRX204257		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L03.bam	SRR616368	@dbgap@:reads/SRP012006/SRS190108/SRX204257/SRR616368/SRR616368.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAL_NormalVsPrimary.png	4			
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-10A-01D	DNA	EFO	SRS190108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C05	SRX204257		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L03.bam	SRR616368	@dbgap@:reads/SRP012006/SRS190108/SRX204257/SRR616368/SRR616368.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAL_NormalVsPrimary.png	4			
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-10A-01D	DNA	EFO	SRS190108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C05	SRX204257		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L03.bam	SRR616368	@dbgap@:reads/SRP012006/SRS190108/SRX204257/SRR616368/SRR616368.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAL_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-10A-01D	DNA	EFO	SRS190108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C05	SRX204257		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L03.bam	SRR616368	@dbgap@:reads/SRP012006/SRS190108/SRX204257/SRR616368/SRR616368.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-10A-01D	DNA	EFO	SRS190108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C05	SRX204257		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L03.bam	SRR616368	@dbgap@:reads/SRP012006/SRS190108/SRX204257/SRR616368/SRR616368.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-10A-01D	DNA	EFO	SRS190108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C05	SRX204257		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L03.bam	SRR616368	@dbgap@:reads/SRP012006/SRS190108/SRX204257/SRR616368/SRR616368.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-10A-01D	DNA	EFO	SRS190108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C05	SRX204257		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L03.bam	SRR616368	@dbgap@:reads/SRP012006/SRS190108/SRX204257/SRR616368/SRR616368.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-10A-01D	DNA	EFO	SRS190108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C05	SRX204257		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L03.bam	SRR616368	@dbgap@:reads/SRP012006/SRS190108/SRX204257/SRR616368/SRR616368.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-10A-01D	DNA	EFO	SRS190108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C05	SRX204257		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L03.bam	SRR616368	@dbgap@:reads/SRP012006/SRS190108/SRX204257/SRR616368/SRR616368.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-10A-01D	DNA	EFO	SRS190108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C05	SRX204257		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L03.bam	SRR616368	@dbgap@:reads/SRP012006/SRS190108/SRX204257/SRR616368/SRR616368.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-10A-01D	DNA	EFO	SRS190108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C05	SRX204257		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L03.bam	SRR616368	@dbgap@:reads/SRP012006/SRS190108/SRX204257/SRR616368/SRR616368.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-10A-01D	DNA	EFO	SRS190108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C05	SRX204257		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L03.bam	SRR616368	@dbgap@:reads/SRP012006/SRS190108/SRX204257/SRR616368/SRR616368.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-10A-01D	DNA	EFO	SRS190108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C05	SRX204257		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L03.bam	SRR616368	@dbgap@:reads/SRP012006/SRS190108/SRX204257/SRR616368/SRR616368.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-10A-01D	DNA	EFO	SRS190108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C05	SRX204257		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAL-10A-01D GS01103-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L03.bam	SRR616368	@dbgap@:reads/SRP012006/SRS190108/SRX204257/SRR616368/SRR616368.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-01A-01D	DNA	EFO	SRS190111	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D01	SRX148679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40978-FS3_L01.bam	SRR498405	@dbgap@:reads/SRP012006/SRS190111/SRX148679/SRR498405/SRR498405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAO_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAO_NormalVsPrimary.png	4			
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-01A-01D	DNA	EFO	SRS190111	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D01	SRX148679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40978-FS3_L01.bam	SRR498405	@dbgap@:reads/SRP012006/SRS190111/SRX148679/SRR498405/SRR498405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAO_NormalVsPrimary.png	4			
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-01A-01D	DNA	EFO	SRS190111	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D01	SRX148679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40978-FS3_L01.bam	SRR498405	@dbgap@:reads/SRP012006/SRS190111/SRX148679/SRR498405/SRR498405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAO_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAO_NormalVsPrimary.png	4			
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-01A-01D	DNA	EFO	SRS190111	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D01	SRX148679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40978-FS3_L01.bam	SRR498405	@dbgap@:reads/SRP012006/SRS190111/SRX148679/SRR498405/SRR498405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAO_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAO_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAO_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-01A-01D	DNA	EFO	SRS190111	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D01	SRX148679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40978-FS3_L01.bam	SRR498405	@dbgap@:reads/SRP012006/SRS190111/SRX148679/SRR498405/SRR498405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAO_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAO_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-01A-01D	DNA	EFO	SRS190111	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D01	SRX148679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40978-FS3_L01.bam	SRR498405	@dbgap@:reads/SRP012006/SRS190111/SRX148679/SRR498405/SRR498405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAO_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAO_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-01A-01D	DNA	EFO	SRS190111	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D01	SRX148679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40978-FS3_L01.bam	SRR498405	@dbgap@:reads/SRP012006/SRS190111/SRX148679/SRR498405/SRR498405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAO_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAO_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-01A-01D	DNA	EFO	SRS190111	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D01	SRX148679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40978-FS3_L01.bam	SRR498405	@dbgap@:reads/SRP012006/SRS190111/SRX148679/SRR498405/SRR498405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAO_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAO_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-01A-01D	DNA	EFO	SRS190111	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D01	SRX148679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40978-FS3_L01.bam	SRR498405	@dbgap@:reads/SRP012006/SRS190111/SRX148679/SRR498405/SRR498405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAO_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAO_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-01A-01D	DNA	EFO	SRS190111	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D01	SRX148679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40978-FS3_L01.bam	SRR498405	@dbgap@:reads/SRP012006/SRS190111/SRX148679/SRR498405/SRR498405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAO_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAO_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-01A-01D	DNA	EFO	SRS190111	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D01	SRX148679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40978-FS3_L01.bam	SRR498405	@dbgap@:reads/SRP012006/SRS190111/SRX148679/SRR498405/SRR498405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAO_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAO_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-01A-01D	DNA	EFO	SRS190111	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D01	SRX148679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40978-FS3_L01.bam	SRR498405	@dbgap@:reads/SRP012006/SRS190111/SRX148679/SRR498405/SRR498405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAO_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAO_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-01A-01D	DNA	EFO	SRS190111	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D01	SRX148679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40978-FS3_L01.bam	SRR498405	@dbgap@:reads/SRP012006/SRS190111/SRX148679/SRR498405/SRR498405.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-01A-01D	DNA	EFO	SRS190111	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D01	SRX148679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40978-FS3_L01.bam	SRR498405	@dbgap@:reads/SRP012006/SRS190111/SRX148679/SRR498405/SRR498405.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-01A-01D	DNA	EFO	SRS190111	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D01	SRX148679		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-01A-01D GS00939-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40978-FS3_L01.bam	SRR498405	@dbgap@:reads/SRP012006/SRS190111/SRX148679/SRR498405/SRR498405.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-11A-01D	DNA	EFO	SRS190112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D04	SRX148678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41075-FS3_L01.bam	SRR498413	@dbgap@:reads/SRP012006/SRS190112/SRX148678/SRR498413/SRR498413.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAO_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAO_NormalVsPrimary.png	4			
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-11A-01D	DNA	EFO	SRS190112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D04	SRX148678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41075-FS3_L01.bam	SRR498413	@dbgap@:reads/SRP012006/SRS190112/SRX148678/SRR498413/SRR498413.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAO_NormalVsPrimary.png	4			
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-11A-01D	DNA	EFO	SRS190112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D04	SRX148678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41075-FS3_L01.bam	SRR498413	@dbgap@:reads/SRP012006/SRS190112/SRX148678/SRR498413/SRR498413.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAO_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAO_NormalVsPrimary.png	4			
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-11A-01D	DNA	EFO	SRS190112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D04	SRX148678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41075-FS3_L01.bam	SRR498413	@dbgap@:reads/SRP012006/SRS190112/SRX148678/SRR498413/SRR498413.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAO_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAO_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAO_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-11A-01D	DNA	EFO	SRS190112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D04	SRX148678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41075-FS3_L01.bam	SRR498413	@dbgap@:reads/SRP012006/SRS190112/SRX148678/SRR498413/SRR498413.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAO_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAO_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-11A-01D	DNA	EFO	SRS190112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D04	SRX148678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41075-FS3_L01.bam	SRR498413	@dbgap@:reads/SRP012006/SRS190112/SRX148678/SRR498413/SRR498413.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAO_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAO_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-11A-01D	DNA	EFO	SRS190112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D04	SRX148678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41075-FS3_L01.bam	SRR498413	@dbgap@:reads/SRP012006/SRS190112/SRX148678/SRR498413/SRR498413.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAO_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAO_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-11A-01D	DNA	EFO	SRS190112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D04	SRX148678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41075-FS3_L01.bam	SRR498413	@dbgap@:reads/SRP012006/SRS190112/SRX148678/SRR498413/SRR498413.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAO_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAO_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-11A-01D	DNA	EFO	SRS190112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D04	SRX148678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41075-FS3_L01.bam	SRR498413	@dbgap@:reads/SRP012006/SRS190112/SRX148678/SRR498413/SRR498413.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAO_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAO_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-11A-01D	DNA	EFO	SRS190112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D04	SRX148678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41075-FS3_L01.bam	SRR498413	@dbgap@:reads/SRP012006/SRS190112/SRX148678/SRR498413/SRR498413.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAO_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAO_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-11A-01D	DNA	EFO	SRS190112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D04	SRX148678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41075-FS3_L01.bam	SRR498413	@dbgap@:reads/SRP012006/SRS190112/SRX148678/SRR498413/SRR498413.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAO_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAO_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-11A-01D	DNA	EFO	SRS190112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D04	SRX148678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41075-FS3_L01.bam	SRR498413	@dbgap@:reads/SRP012006/SRS190112/SRX148678/SRR498413/SRR498413.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAO_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAO_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-11A-01D	DNA	EFO	SRS190112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D04	SRX148678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41075-FS3_L01.bam	SRR498413	@dbgap@:reads/SRP012006/SRS190112/SRX148678/SRR498413/SRR498413.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-11A-01D	DNA	EFO	SRS190112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D04	SRX148678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41075-FS3_L01.bam	SRR498413	@dbgap@:reads/SRP012006/SRS190112/SRX148678/SRR498413/SRR498413.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-11A-01D	DNA	EFO	SRS190112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D04	SRX148678		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAO-11A-01D GS00939-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41075-FS3_L01.bam	SRR498413	@dbgap@:reads/SRP012006/SRS190112/SRX148678/SRR498413/SRR498413.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01D	DNA	EFO	SRS190113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E01	SRX145286		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41191-FS3_L01.bam	SRR492853	@dbgap@:reads/SRP012006/SRS190113/SRX145286/SRR492853/SRR492853.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAQ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAQ_NormalVsPrimary.png	4			
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01D	DNA	EFO	SRS190113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E01	SRX145286		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41191-FS3_L01.bam	SRR492853	@dbgap@:reads/SRP012006/SRS190113/SRX145286/SRR492853/SRR492853.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAQ_NormalVsPrimary.png	4			
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01D	DNA	EFO	SRS190113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E01	SRX145286		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41191-FS3_L01.bam	SRR492853	@dbgap@:reads/SRP012006/SRS190113/SRX145286/SRR492853/SRR492853.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAQ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAQ_NormalVsPrimary.png	4			
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01D	DNA	EFO	SRS190113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E01	SRX145286		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41191-FS3_L01.bam	SRR492853	@dbgap@:reads/SRP012006/SRS190113/SRX145286/SRR492853/SRR492853.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAQ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAQ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAQ_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01D	DNA	EFO	SRS190113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E01	SRX145286		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41191-FS3_L01.bam	SRR492853	@dbgap@:reads/SRP012006/SRS190113/SRX145286/SRR492853/SRR492853.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAQ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAQ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01D	DNA	EFO	SRS190113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E01	SRX145286		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41191-FS3_L01.bam	SRR492853	@dbgap@:reads/SRP012006/SRS190113/SRX145286/SRR492853/SRR492853.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAQ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAQ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01D	DNA	EFO	SRS190113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E01	SRX145286		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41191-FS3_L01.bam	SRR492853	@dbgap@:reads/SRP012006/SRS190113/SRX145286/SRR492853/SRR492853.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAQ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAQ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01D	DNA	EFO	SRS190113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E01	SRX145286		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41191-FS3_L01.bam	SRR492853	@dbgap@:reads/SRP012006/SRS190113/SRX145286/SRR492853/SRR492853.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAQ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAQ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01D	DNA	EFO	SRS190113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E01	SRX145286		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41191-FS3_L01.bam	SRR492853	@dbgap@:reads/SRP012006/SRS190113/SRX145286/SRR492853/SRR492853.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAQ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAQ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01D	DNA	EFO	SRS190113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E01	SRX145286		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41191-FS3_L01.bam	SRR492853	@dbgap@:reads/SRP012006/SRS190113/SRX145286/SRR492853/SRR492853.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAQ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAQ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01D	DNA	EFO	SRS190113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E01	SRX145286		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41191-FS3_L01.bam	SRR492853	@dbgap@:reads/SRP012006/SRS190113/SRX145286/SRR492853/SRR492853.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAQ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAQ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01D	DNA	EFO	SRS190113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E01	SRX145286		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41191-FS3_L01.bam	SRR492853	@dbgap@:reads/SRP012006/SRS190113/SRX145286/SRR492853/SRR492853.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAQ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAQ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01D	DNA	EFO	SRS190113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E01	SRX145286		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41191-FS3_L01.bam	SRR492853	@dbgap@:reads/SRP012006/SRS190113/SRX145286/SRR492853/SRR492853.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01D	DNA	EFO	SRS190113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E01	SRX145286		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41191-FS3_L01.bam	SRR492853	@dbgap@:reads/SRP012006/SRS190113/SRX145286/SRR492853/SRR492853.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01D	DNA	EFO	SRS190113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E01	SRX145286		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-01A-01D GS00939-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41191-FS3_L01.bam	SRR492853	@dbgap@:reads/SRP012006/SRS190113/SRX145286/SRR492853/SRR492853.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-11A-01D	DNA	EFO	SRS190114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E04	SRX145285		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41192-FS3_L01.bam	SRR492861	@dbgap@:reads/SRP012006/SRS190114/SRX145285/SRR492861/SRR492861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAQ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAQ_NormalVsPrimary.png	4			
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-11A-01D	DNA	EFO	SRS190114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E04	SRX145285		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41192-FS3_L01.bam	SRR492861	@dbgap@:reads/SRP012006/SRS190114/SRX145285/SRR492861/SRR492861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAQ_NormalVsPrimary.png	4			
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-11A-01D	DNA	EFO	SRS190114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E04	SRX145285		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41192-FS3_L01.bam	SRR492861	@dbgap@:reads/SRP012006/SRS190114/SRX145285/SRR492861/SRR492861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAQ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAQ_NormalVsPrimary.png	4			
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-11A-01D	DNA	EFO	SRS190114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E04	SRX145285		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41192-FS3_L01.bam	SRR492861	@dbgap@:reads/SRP012006/SRS190114/SRX145285/SRR492861/SRR492861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAQ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAQ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAQ_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-11A-01D	DNA	EFO	SRS190114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E04	SRX145285		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41192-FS3_L01.bam	SRR492861	@dbgap@:reads/SRP012006/SRS190114/SRX145285/SRR492861/SRR492861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAQ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAQ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-11A-01D	DNA	EFO	SRS190114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E04	SRX145285		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41192-FS3_L01.bam	SRR492861	@dbgap@:reads/SRP012006/SRS190114/SRX145285/SRR492861/SRR492861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAQ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAQ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-11A-01D	DNA	EFO	SRS190114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E04	SRX145285		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41192-FS3_L01.bam	SRR492861	@dbgap@:reads/SRP012006/SRS190114/SRX145285/SRR492861/SRR492861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAQ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAQ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-11A-01D	DNA	EFO	SRS190114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E04	SRX145285		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41192-FS3_L01.bam	SRR492861	@dbgap@:reads/SRP012006/SRS190114/SRX145285/SRR492861/SRR492861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAQ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAQ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-11A-01D	DNA	EFO	SRS190114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E04	SRX145285		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41192-FS3_L01.bam	SRR492861	@dbgap@:reads/SRP012006/SRS190114/SRX145285/SRR492861/SRR492861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAQ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAQ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-11A-01D	DNA	EFO	SRS190114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E04	SRX145285		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41192-FS3_L01.bam	SRR492861	@dbgap@:reads/SRP012006/SRS190114/SRX145285/SRR492861/SRR492861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAQ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAQ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-11A-01D	DNA	EFO	SRS190114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E04	SRX145285		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41192-FS3_L01.bam	SRR492861	@dbgap@:reads/SRP012006/SRS190114/SRX145285/SRR492861/SRR492861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAQ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAQ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-11A-01D	DNA	EFO	SRS190114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E04	SRX145285		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41192-FS3_L01.bam	SRR492861	@dbgap@:reads/SRP012006/SRS190114/SRX145285/SRR492861/SRR492861.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAQ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAQ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-11A-01D	DNA	EFO	SRS190114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E04	SRX145285		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41192-FS3_L01.bam	SRR492861	@dbgap@:reads/SRP012006/SRS190114/SRX145285/SRR492861/SRR492861.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-11A-01D	DNA	EFO	SRS190114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E04	SRX145285		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41192-FS3_L01.bam	SRR492861	@dbgap@:reads/SRP012006/SRS190114/SRX145285/SRR492861/SRR492861.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-11A-01D	DNA	EFO	SRS190114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E04	SRX145285		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAQ-11A-01D GS00939-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41192-FS3_L01.bam	SRR492861	@dbgap@:reads/SRP012006/SRS190114/SRX145285/SRR492861/SRR492861.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-01A-01D	DNA	EFO	SRS375198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B07	SRX204291		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55237-FS3_L01.bam	SRR616601	@dbgap@:reads/SRP012006/SRS375198/SRX204291/SRR616601/SRR616601.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAS_NormalVsPrimary.png	4			
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-01A-01D	DNA	EFO	SRS375198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B07	SRX204291		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55237-FS3_L01.bam	SRR616601	@dbgap@:reads/SRP012006/SRS375198/SRX204291/SRR616601/SRR616601.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAS_NormalVsPrimary.png	4			
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-01A-01D	DNA	EFO	SRS375198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B07	SRX204291		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55237-FS3_L01.bam	SRR616601	@dbgap@:reads/SRP012006/SRS375198/SRX204291/SRR616601/SRR616601.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAS_NormalVsPrimary.png	4			
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-01A-01D	DNA	EFO	SRS375198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B07	SRX204291		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55237-FS3_L01.bam	SRR616601	@dbgap@:reads/SRP012006/SRS375198/SRX204291/SRR616601/SRR616601.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAS_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-01A-01D	DNA	EFO	SRS375198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B07	SRX204291		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55237-FS3_L01.bam	SRR616601	@dbgap@:reads/SRP012006/SRS375198/SRX204291/SRR616601/SRR616601.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-01A-01D	DNA	EFO	SRS375198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B07	SRX204291		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55237-FS3_L01.bam	SRR616601	@dbgap@:reads/SRP012006/SRS375198/SRX204291/SRR616601/SRR616601.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-01A-01D	DNA	EFO	SRS375198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B07	SRX204291		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55237-FS3_L01.bam	SRR616601	@dbgap@:reads/SRP012006/SRS375198/SRX204291/SRR616601/SRR616601.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-01A-01D	DNA	EFO	SRS375198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B07	SRX204291		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55237-FS3_L01.bam	SRR616601	@dbgap@:reads/SRP012006/SRS375198/SRX204291/SRR616601/SRR616601.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-01A-01D	DNA	EFO	SRS375198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B07	SRX204291		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55237-FS3_L01.bam	SRR616601	@dbgap@:reads/SRP012006/SRS375198/SRX204291/SRR616601/SRR616601.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-01A-01D	DNA	EFO	SRS375198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B07	SRX204291		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55237-FS3_L01.bam	SRR616601	@dbgap@:reads/SRP012006/SRS375198/SRX204291/SRR616601/SRR616601.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-01A-01D	DNA	EFO	SRS375198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B07	SRX204291		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55237-FS3_L01.bam	SRR616601	@dbgap@:reads/SRP012006/SRS375198/SRX204291/SRR616601/SRR616601.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-01A-01D	DNA	EFO	SRS375198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B07	SRX204291		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55237-FS3_L01.bam	SRR616601	@dbgap@:reads/SRP012006/SRS375198/SRX204291/SRR616601/SRR616601.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-01A-01D	DNA	EFO	SRS375198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B07	SRX204291		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55237-FS3_L01.bam	SRR616601	@dbgap@:reads/SRP012006/SRS375198/SRX204291/SRR616601/SRR616601.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-01A-01D	DNA	EFO	SRS375198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B07	SRX204291		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55237-FS3_L01.bam	SRR616601	@dbgap@:reads/SRP012006/SRS375198/SRX204291/SRR616601/SRR616601.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-01A-01D	DNA	EFO	SRS375198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B07	SRX204291		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-01A-01D GS01103-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55237-FS3_L01.bam	SRR616601	@dbgap@:reads/SRP012006/SRS375198/SRX204291/SRR616601/SRR616601.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-10A-01D	DNA	EFO	SRS375197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C07	SRX204290		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55109-FS3_L01.bam	SRR616608	@dbgap@:reads/SRP012006/SRS375197/SRX204290/SRR616608/SRR616608.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-CAAAAS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAS_NormalVsPrimary.png	4			
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-10A-01D	DNA	EFO	SRS375197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C07	SRX204290		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55109-FS3_L01.bam	SRR616608	@dbgap@:reads/SRP012006/SRS375197/SRX204290/SRR616608/SRR616608.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAS_NormalVsPrimary.png	4			
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-10A-01D	DNA	EFO	SRS375197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C07	SRX204290		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55109-FS3_L01.bam	SRR616608	@dbgap@:reads/SRP012006/SRS375197/SRX204290/SRR616608/SRR616608.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-CAAAAS_NormalVsPrimary.png	4			
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-10A-01D	DNA	EFO	SRS375197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C07	SRX204290		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55109-FS3_L01.bam	SRR616608	@dbgap@:reads/SRP012006/SRS375197/SRX204290/SRR616608/SRR616608.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-CAAAAS_NormalVsPrimary.maf.txt	3
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-10A-01D	DNA	EFO	SRS375197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C07	SRX204290		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55109-FS3_L01.bam	SRR616608	@dbgap@:reads/SRP012006/SRS375197/SRX204290/SRR616608/SRR616608.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-10A-01D	DNA	EFO	SRS375197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C07	SRX204290		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55109-FS3_L01.bam	SRR616608	@dbgap@:reads/SRP012006/SRS375197/SRX204290/SRR616608/SRR616608.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-10A-01D	DNA	EFO	SRS375197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C07	SRX204290		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55109-FS3_L01.bam	SRR616608	@dbgap@:reads/SRP012006/SRS375197/SRX204290/SRR616608/SRR616608.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-10A-01D	DNA	EFO	SRS375197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C07	SRX204290		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55109-FS3_L01.bam	SRR616608	@dbgap@:reads/SRP012006/SRS375197/SRX204290/SRR616608/SRR616608.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-10A-01D	DNA	EFO	SRS375197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C07	SRX204290		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55109-FS3_L01.bam	SRR616608	@dbgap@:reads/SRP012006/SRS375197/SRX204290/SRR616608/SRR616608.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-10A-01D	DNA	EFO	SRS375197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C07	SRX204290		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55109-FS3_L01.bam	SRR616608	@dbgap@:reads/SRP012006/SRS375197/SRX204290/SRR616608/SRR616608.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-10A-01D	DNA	EFO	SRS375197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C07	SRX204290		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55109-FS3_L01.bam	SRR616608	@dbgap@:reads/SRP012006/SRS375197/SRX204290/SRR616608/SRR616608.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-10A-01D	DNA	EFO	SRS375197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C07	SRX204290		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55109-FS3_L01.bam	SRR616608	@dbgap@:reads/SRP012006/SRS375197/SRX204290/SRR616608/SRR616608.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-CAAAAS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-CAAAAS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-10A-01D	DNA	EFO	SRS375197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C07	SRX204290		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55109-FS3_L01.bam	SRR616608	@dbgap@:reads/SRP012006/SRS375197/SRX204290/SRR616608/SRR616608.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-10A-01D	DNA	EFO	SRS375197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C07	SRX204290		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55109-FS3_L01.bam	SRR616608	@dbgap@:reads/SRP012006/SRS375197/SRX204290/SRR616608/SRR616608.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-10A-01D	DNA	EFO	SRS375197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C07	SRX204290		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-CAAAAS-10A-01D GS01103-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55109-FS3_L01.bam	SRR616608	@dbgap@:reads/SRP012006/SRS375197/SRX204290/SRR616608/SRR616608.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B05	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAEBXA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAEBXA_NormalVsPrimary.png	4			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B05	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAEBXA_NormalVsPrimary.png	4			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B05	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAEBXA_NormalVsPrimary.png	4			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B05	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B05	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B05	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B05	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B05	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B05	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B05	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B05	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B05	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B05	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B05	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B05	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00673-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B10	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAEBXA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAEBXA_NormalVsPrimary.png	4			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B10	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAEBXA_NormalVsPrimary.png	4			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B10	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAEBXA_NormalVsPrimary.png	4			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B10	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B10	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B10	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B10	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B10	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B10	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B10	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B10	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B10	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B10	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B10	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B10	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00667-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B09	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAEBXA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAEBXA_NormalVsPrimary.png	4			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B09	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAEBXA_NormalVsPrimary.png	4			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B09	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAEBXA_NormalVsPrimary.png	4			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B09	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B09	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B09	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B09	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B09	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B09	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B09	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B09	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B09	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B09	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B09	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B09	SRX129985		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-01A-01D GS00669-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20012-FS3_L01.bam	SRR445567	@dbgap@:reads/SRP012006/SRS118129/SRX129985/SRR445567/SRR445567.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A06	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAEBXA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAEBXA_NormalVsPrimary.png	4			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A06	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAEBXA_NormalVsPrimary.png	4			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A06	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAEBXA_NormalVsPrimary.png	4			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A06	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A06	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A06	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A06	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A06	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A06	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A06	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A06	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A06	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A06	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A06	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_A06	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00673-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAEBXA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAEBXA_NormalVsPrimary.png	4			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAEBXA_NormalVsPrimary.png	4			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAEBXA_NormalVsPrimary.png	4			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_B10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00669-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B11	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAEBXA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAEBXA_NormalVsPrimary.png	4			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B11	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAEBXA_NormalVsPrimary.png	4			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B11	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAEBXA_NormalVsPrimary.png	4			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B11	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B11	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B11	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B11	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B11	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B11	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B11	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B11	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B11	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B11	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B11	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_B11	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00667-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_A10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAEBXA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAEBXA_NormalVsPrimary.png	4			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_A10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAEBXA_NormalVsPrimary.png	4			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_A10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAEBXA_NormalVsPrimary.png	4			
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_A10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_A10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_A10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_A10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_A10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_A10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_A10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_A10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_A10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAEBXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAEBXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_A10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_A10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-10A-01D	DNA	EFO	SRS118130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_A10	SRX129984		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAEBXA-10A-01D GS00677-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20494-FS3_L01.bam	SRR445575	@dbgap@:reads/SRP012006/SRS118130/SRX129984/SRR445575/SRR445575.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-01A-01D	DNA	EFO	SRS190117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F01	SRX145294		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41585-FS3_L01.bam	SRR492871	@dbgap@:reads/SRP012006/SRS190117/SRX145294/SRR492871/SRR492871.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAECJB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAECJB_NormalVsPrimary.png	4			
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-01A-01D	DNA	EFO	SRS190117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F01	SRX145294		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41585-FS3_L01.bam	SRR492871	@dbgap@:reads/SRP012006/SRS190117/SRX145294/SRR492871/SRR492871.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAECJB_NormalVsPrimary.png	4			
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-01A-01D	DNA	EFO	SRS190117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F01	SRX145294		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41585-FS3_L01.bam	SRR492871	@dbgap@:reads/SRP012006/SRS190117/SRX145294/SRR492871/SRR492871.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAECJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAECJB_NormalVsPrimary.png	4			
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-01A-01D	DNA	EFO	SRS190117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F01	SRX145294		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41585-FS3_L01.bam	SRR492871	@dbgap@:reads/SRP012006/SRS190117/SRX145294/SRR492871/SRR492871.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAECJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAECJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAECJB_NormalVsPrimary.maf.txt	3
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-01A-01D	DNA	EFO	SRS190117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F01	SRX145294		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41585-FS3_L01.bam	SRR492871	@dbgap@:reads/SRP012006/SRS190117/SRX145294/SRR492871/SRR492871.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAECJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAECJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-01A-01D	DNA	EFO	SRS190117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F01	SRX145294		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41585-FS3_L01.bam	SRR492871	@dbgap@:reads/SRP012006/SRS190117/SRX145294/SRR492871/SRR492871.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAECJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAECJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-01A-01D	DNA	EFO	SRS190117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F01	SRX145294		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41585-FS3_L01.bam	SRR492871	@dbgap@:reads/SRP012006/SRS190117/SRX145294/SRR492871/SRR492871.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAECJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAECJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-01A-01D	DNA	EFO	SRS190117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F01	SRX145294		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41585-FS3_L01.bam	SRR492871	@dbgap@:reads/SRP012006/SRS190117/SRX145294/SRR492871/SRR492871.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAECJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAECJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-01A-01D	DNA	EFO	SRS190117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F01	SRX145294		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41585-FS3_L01.bam	SRR492871	@dbgap@:reads/SRP012006/SRS190117/SRX145294/SRR492871/SRR492871.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAECJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAECJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-01A-01D	DNA	EFO	SRS190117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F01	SRX145294		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41585-FS3_L01.bam	SRR492871	@dbgap@:reads/SRP012006/SRS190117/SRX145294/SRR492871/SRR492871.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAECJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAECJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-01A-01D	DNA	EFO	SRS190117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F01	SRX145294		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41585-FS3_L01.bam	SRR492871	@dbgap@:reads/SRP012006/SRS190117/SRX145294/SRR492871/SRR492871.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAECJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAECJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-01A-01D	DNA	EFO	SRS190117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F01	SRX145294		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41585-FS3_L01.bam	SRR492871	@dbgap@:reads/SRP012006/SRS190117/SRX145294/SRR492871/SRR492871.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAECJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAECJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-01A-01D	DNA	EFO	SRS190117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F01	SRX145294		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41585-FS3_L01.bam	SRR492871	@dbgap@:reads/SRP012006/SRS190117/SRX145294/SRR492871/SRR492871.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-01A-01D	DNA	EFO	SRS190117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F01	SRX145294		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41585-FS3_L01.bam	SRR492871	@dbgap@:reads/SRP012006/SRS190117/SRX145294/SRR492871/SRR492871.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-01A-01D	DNA	EFO	SRS190117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F01	SRX145294		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-01A-01D GS00939-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41585-FS3_L01.bam	SRR492871	@dbgap@:reads/SRP012006/SRS190117/SRX145294/SRR492871/SRR492871.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-11A-01D	DNA	EFO	SRS190118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F04	SRX145293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41162-FS3_L01.bam	SRR492879	@dbgap@:reads/SRP012006/SRS190118/SRX145293/SRR492879/SRR492879.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAECJB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAECJB_NormalVsPrimary.png	4			
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-11A-01D	DNA	EFO	SRS190118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F04	SRX145293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41162-FS3_L01.bam	SRR492879	@dbgap@:reads/SRP012006/SRS190118/SRX145293/SRR492879/SRR492879.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAECJB_NormalVsPrimary.png	4			
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-11A-01D	DNA	EFO	SRS190118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F04	SRX145293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41162-FS3_L01.bam	SRR492879	@dbgap@:reads/SRP012006/SRS190118/SRX145293/SRR492879/SRR492879.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAECJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAECJB_NormalVsPrimary.png	4			
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-11A-01D	DNA	EFO	SRS190118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F04	SRX145293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41162-FS3_L01.bam	SRR492879	@dbgap@:reads/SRP012006/SRS190118/SRX145293/SRR492879/SRR492879.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAECJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAECJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAECJB_NormalVsPrimary.maf.txt	3
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-11A-01D	DNA	EFO	SRS190118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F04	SRX145293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41162-FS3_L01.bam	SRR492879	@dbgap@:reads/SRP012006/SRS190118/SRX145293/SRR492879/SRR492879.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAECJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAECJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-11A-01D	DNA	EFO	SRS190118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F04	SRX145293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41162-FS3_L01.bam	SRR492879	@dbgap@:reads/SRP012006/SRS190118/SRX145293/SRR492879/SRR492879.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAECJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAECJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-11A-01D	DNA	EFO	SRS190118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F04	SRX145293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41162-FS3_L01.bam	SRR492879	@dbgap@:reads/SRP012006/SRS190118/SRX145293/SRR492879/SRR492879.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAECJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAECJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-11A-01D	DNA	EFO	SRS190118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F04	SRX145293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41162-FS3_L01.bam	SRR492879	@dbgap@:reads/SRP012006/SRS190118/SRX145293/SRR492879/SRR492879.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAECJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAECJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-11A-01D	DNA	EFO	SRS190118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F04	SRX145293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41162-FS3_L01.bam	SRR492879	@dbgap@:reads/SRP012006/SRS190118/SRX145293/SRR492879/SRR492879.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAECJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAECJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-11A-01D	DNA	EFO	SRS190118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F04	SRX145293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41162-FS3_L01.bam	SRR492879	@dbgap@:reads/SRP012006/SRS190118/SRX145293/SRR492879/SRR492879.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAECJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAECJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-11A-01D	DNA	EFO	SRS190118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F04	SRX145293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41162-FS3_L01.bam	SRR492879	@dbgap@:reads/SRP012006/SRS190118/SRX145293/SRR492879/SRR492879.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAECJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAECJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-11A-01D	DNA	EFO	SRS190118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F04	SRX145293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41162-FS3_L01.bam	SRR492879	@dbgap@:reads/SRP012006/SRS190118/SRX145293/SRR492879/SRR492879.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAECJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAECJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-11A-01D	DNA	EFO	SRS190118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F04	SRX145293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41162-FS3_L01.bam	SRR492879	@dbgap@:reads/SRP012006/SRS190118/SRX145293/SRR492879/SRR492879.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-11A-01D	DNA	EFO	SRS190118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F04	SRX145293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41162-FS3_L01.bam	SRR492879	@dbgap@:reads/SRP012006/SRS190118/SRX145293/SRR492879/SRR492879.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-11A-01D	DNA	EFO	SRS190118	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F04	SRX145293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAECJB-11A-01D GS00939-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41162-FS3_L01.bam	SRR492879	@dbgap@:reads/SRP012006/SRS190118/SRX145293/SRR492879/SRR492879.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-01D	DNA	EFO	SRS190123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G01	SRX145275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41950-FS3_L01.bam	SRR492788	@dbgap@:reads/SRP012006/SRS190123/SRX145275/SRR492788/SRR492788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJLKR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLKR_NormalVsPrimary.png	4			
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-01D	DNA	EFO	SRS190123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G01	SRX145275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41950-FS3_L01.bam	SRR492788	@dbgap@:reads/SRP012006/SRS190123/SRX145275/SRR492788/SRR492788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLKR_NormalVsPrimary.png	4			
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-01D	DNA	EFO	SRS190123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G01	SRX145275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41950-FS3_L01.bam	SRR492788	@dbgap@:reads/SRP012006/SRS190123/SRX145275/SRR492788/SRR492788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLKR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLKR_NormalVsPrimary.png	4			
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-01D	DNA	EFO	SRS190123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G01	SRX145275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41950-FS3_L01.bam	SRR492788	@dbgap@:reads/SRP012006/SRS190123/SRX145275/SRR492788/SRR492788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLKR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLKR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJLKR_NormalVsPrimary.maf.txt	3
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-01D	DNA	EFO	SRS190123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G01	SRX145275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41950-FS3_L01.bam	SRR492788	@dbgap@:reads/SRP012006/SRS190123/SRX145275/SRR492788/SRR492788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLKR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLKR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-01D	DNA	EFO	SRS190123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G01	SRX145275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41950-FS3_L01.bam	SRR492788	@dbgap@:reads/SRP012006/SRS190123/SRX145275/SRR492788/SRR492788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLKR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLKR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-01D	DNA	EFO	SRS190123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G01	SRX145275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41950-FS3_L01.bam	SRR492788	@dbgap@:reads/SRP012006/SRS190123/SRX145275/SRR492788/SRR492788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLKR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLKR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-01D	DNA	EFO	SRS190123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G01	SRX145275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41950-FS3_L01.bam	SRR492788	@dbgap@:reads/SRP012006/SRS190123/SRX145275/SRR492788/SRR492788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLKR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLKR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-01D	DNA	EFO	SRS190123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G01	SRX145275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41950-FS3_L01.bam	SRR492788	@dbgap@:reads/SRP012006/SRS190123/SRX145275/SRR492788/SRR492788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLKR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLKR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-01D	DNA	EFO	SRS190123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G01	SRX145275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41950-FS3_L01.bam	SRR492788	@dbgap@:reads/SRP012006/SRS190123/SRX145275/SRR492788/SRR492788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLKR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLKR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-01D	DNA	EFO	SRS190123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G01	SRX145275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41950-FS3_L01.bam	SRR492788	@dbgap@:reads/SRP012006/SRS190123/SRX145275/SRR492788/SRR492788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLKR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLKR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-01D	DNA	EFO	SRS190123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G01	SRX145275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41950-FS3_L01.bam	SRR492788	@dbgap@:reads/SRP012006/SRS190123/SRX145275/SRR492788/SRR492788.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLKR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLKR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-01D	DNA	EFO	SRS190123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G01	SRX145275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41950-FS3_L01.bam	SRR492788	@dbgap@:reads/SRP012006/SRS190123/SRX145275/SRR492788/SRR492788.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-01D	DNA	EFO	SRS190123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G01	SRX145275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41950-FS3_L01.bam	SRR492788	@dbgap@:reads/SRP012006/SRS190123/SRX145275/SRR492788/SRR492788.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-01D	DNA	EFO	SRS190123	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G01	SRX145275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-01A-01D GS00939-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41950-FS3_L01.bam	SRR492788	@dbgap@:reads/SRP012006/SRS190123/SRX145275/SRR492788/SRR492788.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-11A-01D	DNA	EFO	SRS190124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G04	SRX145274		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41586-FS3_L01.bam	SRR492796	@dbgap@:reads/SRP012006/SRS190124/SRX145274/SRR492796/SRR492796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJLKR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLKR_NormalVsPrimary.png	4			
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-11A-01D	DNA	EFO	SRS190124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G04	SRX145274		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41586-FS3_L01.bam	SRR492796	@dbgap@:reads/SRP012006/SRS190124/SRX145274/SRR492796/SRR492796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLKR_NormalVsPrimary.png	4			
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-11A-01D	DNA	EFO	SRS190124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G04	SRX145274		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41586-FS3_L01.bam	SRR492796	@dbgap@:reads/SRP012006/SRS190124/SRX145274/SRR492796/SRR492796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLKR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLKR_NormalVsPrimary.png	4			
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-11A-01D	DNA	EFO	SRS190124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G04	SRX145274		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41586-FS3_L01.bam	SRR492796	@dbgap@:reads/SRP012006/SRS190124/SRX145274/SRR492796/SRR492796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLKR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLKR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJLKR_NormalVsPrimary.maf.txt	3
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-11A-01D	DNA	EFO	SRS190124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G04	SRX145274		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41586-FS3_L01.bam	SRR492796	@dbgap@:reads/SRP012006/SRS190124/SRX145274/SRR492796/SRR492796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLKR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLKR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-11A-01D	DNA	EFO	SRS190124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G04	SRX145274		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41586-FS3_L01.bam	SRR492796	@dbgap@:reads/SRP012006/SRS190124/SRX145274/SRR492796/SRR492796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLKR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLKR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-11A-01D	DNA	EFO	SRS190124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G04	SRX145274		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41586-FS3_L01.bam	SRR492796	@dbgap@:reads/SRP012006/SRS190124/SRX145274/SRR492796/SRR492796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLKR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLKR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-11A-01D	DNA	EFO	SRS190124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G04	SRX145274		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41586-FS3_L01.bam	SRR492796	@dbgap@:reads/SRP012006/SRS190124/SRX145274/SRR492796/SRR492796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLKR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLKR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-11A-01D	DNA	EFO	SRS190124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G04	SRX145274		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41586-FS3_L01.bam	SRR492796	@dbgap@:reads/SRP012006/SRS190124/SRX145274/SRR492796/SRR492796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLKR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLKR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-11A-01D	DNA	EFO	SRS190124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G04	SRX145274		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41586-FS3_L01.bam	SRR492796	@dbgap@:reads/SRP012006/SRS190124/SRX145274/SRR492796/SRR492796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLKR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLKR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-11A-01D	DNA	EFO	SRS190124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G04	SRX145274		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41586-FS3_L01.bam	SRR492796	@dbgap@:reads/SRP012006/SRS190124/SRX145274/SRR492796/SRR492796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLKR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLKR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-11A-01D	DNA	EFO	SRS190124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G04	SRX145274		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41586-FS3_L01.bam	SRR492796	@dbgap@:reads/SRP012006/SRS190124/SRX145274/SRR492796/SRR492796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLKR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLKR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-11A-01D	DNA	EFO	SRS190124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G04	SRX145274		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41586-FS3_L01.bam	SRR492796	@dbgap@:reads/SRP012006/SRS190124/SRX145274/SRR492796/SRR492796.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-11A-01D	DNA	EFO	SRS190124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G04	SRX145274		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41586-FS3_L01.bam	SRR492796	@dbgap@:reads/SRP012006/SRS190124/SRX145274/SRR492796/SRR492796.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-11A-01D	DNA	EFO	SRS190124	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G04	SRX145274		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLKR-11A-01D GS00939-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41586-FS3_L01.bam	SRR492796	@dbgap@:reads/SRP012006/SRS190124/SRX145274/SRR492796/SRR492796.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-01A-01D	DNA	EFO	SRS190125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A02	SRX145279		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41589-FS3_L01.bam	SRR492818	@dbgap@:reads/SRP012006/SRS190125/SRX145279/SRR492818/SRR492818.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJLLF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLLF_NormalVsPrimary.png	4			
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-01A-01D	DNA	EFO	SRS190125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A02	SRX145279		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41589-FS3_L01.bam	SRR492818	@dbgap@:reads/SRP012006/SRS190125/SRX145279/SRR492818/SRR492818.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLLF_NormalVsPrimary.png	4			
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-01A-01D	DNA	EFO	SRS190125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A02	SRX145279		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41589-FS3_L01.bam	SRR492818	@dbgap@:reads/SRP012006/SRS190125/SRX145279/SRR492818/SRR492818.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLLF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLLF_NormalVsPrimary.png	4			
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-01A-01D	DNA	EFO	SRS190125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A02	SRX145279		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41589-FS3_L01.bam	SRR492818	@dbgap@:reads/SRP012006/SRS190125/SRX145279/SRR492818/SRR492818.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLLF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLLF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJLLF_NormalVsPrimary.maf.txt	3
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-01A-01D	DNA	EFO	SRS190125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A02	SRX145279		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41589-FS3_L01.bam	SRR492818	@dbgap@:reads/SRP012006/SRS190125/SRX145279/SRR492818/SRR492818.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLLF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLLF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-01A-01D	DNA	EFO	SRS190125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A02	SRX145279		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41589-FS3_L01.bam	SRR492818	@dbgap@:reads/SRP012006/SRS190125/SRX145279/SRR492818/SRR492818.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLLF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLLF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-01A-01D	DNA	EFO	SRS190125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A02	SRX145279		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41589-FS3_L01.bam	SRR492818	@dbgap@:reads/SRP012006/SRS190125/SRX145279/SRR492818/SRR492818.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLLF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLLF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-01A-01D	DNA	EFO	SRS190125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A02	SRX145279		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41589-FS3_L01.bam	SRR492818	@dbgap@:reads/SRP012006/SRS190125/SRX145279/SRR492818/SRR492818.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLLF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLLF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-01A-01D	DNA	EFO	SRS190125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A02	SRX145279		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41589-FS3_L01.bam	SRR492818	@dbgap@:reads/SRP012006/SRS190125/SRX145279/SRR492818/SRR492818.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLLF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLLF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-01A-01D	DNA	EFO	SRS190125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A02	SRX145279		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41589-FS3_L01.bam	SRR492818	@dbgap@:reads/SRP012006/SRS190125/SRX145279/SRR492818/SRR492818.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLLF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLLF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-01A-01D	DNA	EFO	SRS190125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A02	SRX145279		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41589-FS3_L01.bam	SRR492818	@dbgap@:reads/SRP012006/SRS190125/SRX145279/SRR492818/SRR492818.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLLF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLLF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-01A-01D	DNA	EFO	SRS190125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A02	SRX145279		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41589-FS3_L01.bam	SRR492818	@dbgap@:reads/SRP012006/SRS190125/SRX145279/SRR492818/SRR492818.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLLF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLLF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-01A-01D	DNA	EFO	SRS190125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A02	SRX145279		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41589-FS3_L01.bam	SRR492818	@dbgap@:reads/SRP012006/SRS190125/SRX145279/SRR492818/SRR492818.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-01A-01D	DNA	EFO	SRS190125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A02	SRX145279		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41589-FS3_L01.bam	SRR492818	@dbgap@:reads/SRP012006/SRS190125/SRX145279/SRR492818/SRR492818.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-01A-01D	DNA	EFO	SRS190125	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A02	SRX145279		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-01A-01D GS00939-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41589-FS3_L01.bam	SRR492818	@dbgap@:reads/SRP012006/SRS190125/SRX145279/SRR492818/SRR492818.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-11A-01D	DNA	EFO	SRS190126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H04	SRX145278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41588-FS3_L01.bam	SRR492826	@dbgap@:reads/SRP012006/SRS190126/SRX145278/SRR492826/SRR492826.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJLLF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLLF_NormalVsPrimary.png	4			
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-11A-01D	DNA	EFO	SRS190126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H04	SRX145278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41588-FS3_L01.bam	SRR492826	@dbgap@:reads/SRP012006/SRS190126/SRX145278/SRR492826/SRR492826.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLLF_NormalVsPrimary.png	4			
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-11A-01D	DNA	EFO	SRS190126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H04	SRX145278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41588-FS3_L01.bam	SRR492826	@dbgap@:reads/SRP012006/SRS190126/SRX145278/SRR492826/SRR492826.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLLF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLLF_NormalVsPrimary.png	4			
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-11A-01D	DNA	EFO	SRS190126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H04	SRX145278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41588-FS3_L01.bam	SRR492826	@dbgap@:reads/SRP012006/SRS190126/SRX145278/SRR492826/SRR492826.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLLF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLLF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJLLF_NormalVsPrimary.maf.txt	3
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-11A-01D	DNA	EFO	SRS190126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H04	SRX145278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41588-FS3_L01.bam	SRR492826	@dbgap@:reads/SRP012006/SRS190126/SRX145278/SRR492826/SRR492826.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLLF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLLF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-11A-01D	DNA	EFO	SRS190126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H04	SRX145278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41588-FS3_L01.bam	SRR492826	@dbgap@:reads/SRP012006/SRS190126/SRX145278/SRR492826/SRR492826.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLLF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLLF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-11A-01D	DNA	EFO	SRS190126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H04	SRX145278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41588-FS3_L01.bam	SRR492826	@dbgap@:reads/SRP012006/SRS190126/SRX145278/SRR492826/SRR492826.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLLF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLLF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-11A-01D	DNA	EFO	SRS190126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H04	SRX145278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41588-FS3_L01.bam	SRR492826	@dbgap@:reads/SRP012006/SRS190126/SRX145278/SRR492826/SRR492826.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLLF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLLF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-11A-01D	DNA	EFO	SRS190126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H04	SRX145278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41588-FS3_L01.bam	SRR492826	@dbgap@:reads/SRP012006/SRS190126/SRX145278/SRR492826/SRR492826.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLLF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLLF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-11A-01D	DNA	EFO	SRS190126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H04	SRX145278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41588-FS3_L01.bam	SRR492826	@dbgap@:reads/SRP012006/SRS190126/SRX145278/SRR492826/SRR492826.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLLF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLLF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-11A-01D	DNA	EFO	SRS190126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H04	SRX145278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41588-FS3_L01.bam	SRR492826	@dbgap@:reads/SRP012006/SRS190126/SRX145278/SRR492826/SRR492826.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLLF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLLF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-11A-01D	DNA	EFO	SRS190126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H04	SRX145278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41588-FS3_L01.bam	SRR492826	@dbgap@:reads/SRP012006/SRS190126/SRX145278/SRR492826/SRR492826.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLLF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLLF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-11A-01D	DNA	EFO	SRS190126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H04	SRX145278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41588-FS3_L01.bam	SRR492826	@dbgap@:reads/SRP012006/SRS190126/SRX145278/SRR492826/SRR492826.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-11A-01D	DNA	EFO	SRS190126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H04	SRX145278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41588-FS3_L01.bam	SRR492826	@dbgap@:reads/SRP012006/SRS190126/SRX145278/SRR492826/SRR492826.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-11A-01D	DNA	EFO	SRS190126	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H04	SRX145278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLLF-11A-01D GS00939-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41588-FS3_L01.bam	SRR492826	@dbgap@:reads/SRP012006/SRS190126/SRX145278/SRR492826/SRR492826.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01D	DNA	EFO	SRS190127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B02	SRX186442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L01.bam	SRR567929	@dbgap@:reads/SRP012006/SRS190127/SRX186442/SRR567929/SRR567929.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJLNJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLNJ_NormalVsPrimary.png	4			
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01D	DNA	EFO	SRS190127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B02	SRX186442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L01.bam	SRR567929	@dbgap@:reads/SRP012006/SRS190127/SRX186442/SRR567929/SRR567929.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLNJ_NormalVsPrimary.png	4			
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01D	DNA	EFO	SRS190127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B02	SRX186442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L01.bam	SRR567929	@dbgap@:reads/SRP012006/SRS190127/SRX186442/SRR567929/SRR567929.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLNJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLNJ_NormalVsPrimary.png	4			
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01D	DNA	EFO	SRS190127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B02	SRX186442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L01.bam	SRR567929	@dbgap@:reads/SRP012006/SRS190127/SRX186442/SRR567929/SRR567929.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLNJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLNJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJLNJ_NormalVsPrimary.maf.txt	3
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01D	DNA	EFO	SRS190127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B02	SRX186442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L01.bam	SRR567929	@dbgap@:reads/SRP012006/SRS190127/SRX186442/SRR567929/SRR567929.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLNJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLNJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01D	DNA	EFO	SRS190127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B02	SRX186442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L01.bam	SRR567929	@dbgap@:reads/SRP012006/SRS190127/SRX186442/SRR567929/SRR567929.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLNJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLNJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01D	DNA	EFO	SRS190127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B02	SRX186442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L01.bam	SRR567929	@dbgap@:reads/SRP012006/SRS190127/SRX186442/SRR567929/SRR567929.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLNJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLNJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01D	DNA	EFO	SRS190127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B02	SRX186442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L01.bam	SRR567929	@dbgap@:reads/SRP012006/SRS190127/SRX186442/SRR567929/SRR567929.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLNJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLNJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01D	DNA	EFO	SRS190127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B02	SRX186442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L01.bam	SRR567929	@dbgap@:reads/SRP012006/SRS190127/SRX186442/SRR567929/SRR567929.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLNJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLNJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01D	DNA	EFO	SRS190127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B02	SRX186442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L01.bam	SRR567929	@dbgap@:reads/SRP012006/SRS190127/SRX186442/SRR567929/SRR567929.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLNJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLNJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01D	DNA	EFO	SRS190127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B02	SRX186442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L01.bam	SRR567929	@dbgap@:reads/SRP012006/SRS190127/SRX186442/SRR567929/SRR567929.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLNJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLNJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01D	DNA	EFO	SRS190127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B02	SRX186442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L01.bam	SRR567929	@dbgap@:reads/SRP012006/SRS190127/SRX186442/SRR567929/SRR567929.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLNJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLNJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01D	DNA	EFO	SRS190127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B02	SRX186442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L01.bam	SRR567929	@dbgap@:reads/SRP012006/SRS190127/SRX186442/SRR567929/SRR567929.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01D	DNA	EFO	SRS190127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B02	SRX186442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L01.bam	SRR567929	@dbgap@:reads/SRP012006/SRS190127/SRX186442/SRR567929/SRR567929.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01D	DNA	EFO	SRS190127	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B02	SRX186442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-01A-01D GS00939-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L01.bam	SRR567929	@dbgap@:reads/SRP012006/SRS190127/SRX186442/SRR567929/SRR567929.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-11A-01D	DNA	EFO	SRS190128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01060-CLS_A02	SRX186441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52373-FS3_L01.bam	SRR567937	@dbgap@:reads/SRP012006/SRS190128/SRX186441/SRR567937/SRR567937.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJLNJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLNJ_NormalVsPrimary.png	4			
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-11A-01D	DNA	EFO	SRS190128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01060-CLS_A02	SRX186441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52373-FS3_L01.bam	SRR567937	@dbgap@:reads/SRP012006/SRS190128/SRX186441/SRR567937/SRR567937.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLNJ_NormalVsPrimary.png	4			
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-11A-01D	DNA	EFO	SRS190128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01060-CLS_A02	SRX186441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52373-FS3_L01.bam	SRR567937	@dbgap@:reads/SRP012006/SRS190128/SRX186441/SRR567937/SRR567937.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLNJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLNJ_NormalVsPrimary.png	4			
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-11A-01D	DNA	EFO	SRS190128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01060-CLS_A02	SRX186441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52373-FS3_L01.bam	SRR567937	@dbgap@:reads/SRP012006/SRS190128/SRX186441/SRR567937/SRR567937.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLNJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLNJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJLNJ_NormalVsPrimary.maf.txt	3
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-11A-01D	DNA	EFO	SRS190128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01060-CLS_A02	SRX186441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52373-FS3_L01.bam	SRR567937	@dbgap@:reads/SRP012006/SRS190128/SRX186441/SRR567937/SRR567937.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLNJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLNJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-11A-01D	DNA	EFO	SRS190128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01060-CLS_A02	SRX186441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52373-FS3_L01.bam	SRR567937	@dbgap@:reads/SRP012006/SRS190128/SRX186441/SRR567937/SRR567937.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLNJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLNJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-11A-01D	DNA	EFO	SRS190128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01060-CLS_A02	SRX186441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52373-FS3_L01.bam	SRR567937	@dbgap@:reads/SRP012006/SRS190128/SRX186441/SRR567937/SRR567937.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLNJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLNJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-11A-01D	DNA	EFO	SRS190128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01060-CLS_A02	SRX186441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52373-FS3_L01.bam	SRR567937	@dbgap@:reads/SRP012006/SRS190128/SRX186441/SRR567937/SRR567937.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLNJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLNJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-11A-01D	DNA	EFO	SRS190128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01060-CLS_A02	SRX186441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52373-FS3_L01.bam	SRR567937	@dbgap@:reads/SRP012006/SRS190128/SRX186441/SRR567937/SRR567937.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLNJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLNJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-11A-01D	DNA	EFO	SRS190128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01060-CLS_A02	SRX186441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52373-FS3_L01.bam	SRR567937	@dbgap@:reads/SRP012006/SRS190128/SRX186441/SRR567937/SRR567937.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLNJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLNJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-11A-01D	DNA	EFO	SRS190128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01060-CLS_A02	SRX186441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52373-FS3_L01.bam	SRR567937	@dbgap@:reads/SRP012006/SRS190128/SRX186441/SRR567937/SRR567937.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLNJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLNJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-11A-01D	DNA	EFO	SRS190128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01060-CLS_A02	SRX186441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52373-FS3_L01.bam	SRR567937	@dbgap@:reads/SRP012006/SRS190128/SRX186441/SRR567937/SRR567937.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLNJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLNJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-11A-01D	DNA	EFO	SRS190128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01060-CLS_A02	SRX186441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52373-FS3_L01.bam	SRR567937	@dbgap@:reads/SRP012006/SRS190128/SRX186441/SRR567937/SRR567937.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-11A-01D	DNA	EFO	SRS190128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01060-CLS_A02	SRX186441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52373-FS3_L01.bam	SRR567937	@dbgap@:reads/SRP012006/SRS190128/SRX186441/SRR567937/SRR567937.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-11A-01D	DNA	EFO	SRS190128	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01060-CLS_A02	SRX186441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLNJ-11A-01D GS01060-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52373-FS3_L01.bam	SRR567937	@dbgap@:reads/SRP012006/SRS190128/SRX186441/SRR567937/SRR567937.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-01A-01D	DNA	EFO	SRS190129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C02	SRX149442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L03.bam	SRR500536	@dbgap@:reads/SRP012006/SRS190129/SRX149442/SRR500536/SRR500536.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJLPX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLPX_NormalVsPrimary.png	4			
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-01A-01D	DNA	EFO	SRS190129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C02	SRX149442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L03.bam	SRR500536	@dbgap@:reads/SRP012006/SRS190129/SRX149442/SRR500536/SRR500536.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLPX_NormalVsPrimary.png	4			
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-01A-01D	DNA	EFO	SRS190129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C02	SRX149442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L03.bam	SRR500536	@dbgap@:reads/SRP012006/SRS190129/SRX149442/SRR500536/SRR500536.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLPX_NormalVsPrimary.png	4			
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-01A-01D	DNA	EFO	SRS190129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C02	SRX149442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L03.bam	SRR500536	@dbgap@:reads/SRP012006/SRS190129/SRX149442/SRR500536/SRR500536.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJLPX_NormalVsPrimary.maf.txt	3
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-01A-01D	DNA	EFO	SRS190129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C02	SRX149442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L03.bam	SRR500536	@dbgap@:reads/SRP012006/SRS190129/SRX149442/SRR500536/SRR500536.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-01A-01D	DNA	EFO	SRS190129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C02	SRX149442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L03.bam	SRR500536	@dbgap@:reads/SRP012006/SRS190129/SRX149442/SRR500536/SRR500536.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-01A-01D	DNA	EFO	SRS190129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C02	SRX149442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L03.bam	SRR500536	@dbgap@:reads/SRP012006/SRS190129/SRX149442/SRR500536/SRR500536.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-01A-01D	DNA	EFO	SRS190129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C02	SRX149442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L03.bam	SRR500536	@dbgap@:reads/SRP012006/SRS190129/SRX149442/SRR500536/SRR500536.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-01A-01D	DNA	EFO	SRS190129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C02	SRX149442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L03.bam	SRR500536	@dbgap@:reads/SRP012006/SRS190129/SRX149442/SRR500536/SRR500536.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-01A-01D	DNA	EFO	SRS190129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C02	SRX149442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L03.bam	SRR500536	@dbgap@:reads/SRP012006/SRS190129/SRX149442/SRR500536/SRR500536.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-01A-01D	DNA	EFO	SRS190129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C02	SRX149442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L03.bam	SRR500536	@dbgap@:reads/SRP012006/SRS190129/SRX149442/SRR500536/SRR500536.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-01A-01D	DNA	EFO	SRS190129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C02	SRX149442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L03.bam	SRR500536	@dbgap@:reads/SRP012006/SRS190129/SRX149442/SRR500536/SRR500536.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-01A-01D	DNA	EFO	SRS190129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C02	SRX149442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L03.bam	SRR500536	@dbgap@:reads/SRP012006/SRS190129/SRX149442/SRR500536/SRR500536.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-01A-01D	DNA	EFO	SRS190129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C02	SRX149442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L03.bam	SRR500536	@dbgap@:reads/SRP012006/SRS190129/SRX149442/SRR500536/SRR500536.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-01A-01D	DNA	EFO	SRS190129	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C02	SRX149442		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-01A-01D GS00939-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44540-FS3_L03.bam	SRR500536	@dbgap@:reads/SRP012006/SRS190129/SRX149442/SRR500536/SRR500536.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-11A-01D	DNA	EFO	SRS190130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F08	SRX149441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44539-FS3_L01.bam	SRR500543	@dbgap@:reads/SRP012006/SRS190130/SRX149441/SRR500543/SRR500543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJLPX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLPX_NormalVsPrimary.png	4			
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-11A-01D	DNA	EFO	SRS190130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F08	SRX149441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44539-FS3_L01.bam	SRR500543	@dbgap@:reads/SRP012006/SRS190130/SRX149441/SRR500543/SRR500543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLPX_NormalVsPrimary.png	4			
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-11A-01D	DNA	EFO	SRS190130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F08	SRX149441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44539-FS3_L01.bam	SRR500543	@dbgap@:reads/SRP012006/SRS190130/SRX149441/SRR500543/SRR500543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLPX_NormalVsPrimary.png	4			
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-11A-01D	DNA	EFO	SRS190130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F08	SRX149441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44539-FS3_L01.bam	SRR500543	@dbgap@:reads/SRP012006/SRS190130/SRX149441/SRR500543/SRR500543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJLPX_NormalVsPrimary.maf.txt	3
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-11A-01D	DNA	EFO	SRS190130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F08	SRX149441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44539-FS3_L01.bam	SRR500543	@dbgap@:reads/SRP012006/SRS190130/SRX149441/SRR500543/SRR500543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-11A-01D	DNA	EFO	SRS190130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F08	SRX149441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44539-FS3_L01.bam	SRR500543	@dbgap@:reads/SRP012006/SRS190130/SRX149441/SRR500543/SRR500543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-11A-01D	DNA	EFO	SRS190130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F08	SRX149441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44539-FS3_L01.bam	SRR500543	@dbgap@:reads/SRP012006/SRS190130/SRX149441/SRR500543/SRR500543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-11A-01D	DNA	EFO	SRS190130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F08	SRX149441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44539-FS3_L01.bam	SRR500543	@dbgap@:reads/SRP012006/SRS190130/SRX149441/SRR500543/SRR500543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-11A-01D	DNA	EFO	SRS190130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F08	SRX149441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44539-FS3_L01.bam	SRR500543	@dbgap@:reads/SRP012006/SRS190130/SRX149441/SRR500543/SRR500543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-11A-01D	DNA	EFO	SRS190130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F08	SRX149441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44539-FS3_L01.bam	SRR500543	@dbgap@:reads/SRP012006/SRS190130/SRX149441/SRR500543/SRR500543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-11A-01D	DNA	EFO	SRS190130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F08	SRX149441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44539-FS3_L01.bam	SRR500543	@dbgap@:reads/SRP012006/SRS190130/SRX149441/SRR500543/SRR500543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-11A-01D	DNA	EFO	SRS190130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F08	SRX149441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44539-FS3_L01.bam	SRR500543	@dbgap@:reads/SRP012006/SRS190130/SRX149441/SRR500543/SRR500543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-11A-01D	DNA	EFO	SRS190130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F08	SRX149441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44539-FS3_L01.bam	SRR500543	@dbgap@:reads/SRP012006/SRS190130/SRX149441/SRR500543/SRR500543.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-11A-01D	DNA	EFO	SRS190130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F08	SRX149441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44539-FS3_L01.bam	SRR500543	@dbgap@:reads/SRP012006/SRS190130/SRX149441/SRR500543/SRR500543.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-11A-01D	DNA	EFO	SRS190130	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F08	SRX149441		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLPX-11A-01D GS01004-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44539-FS3_L01.bam	SRR500543	@dbgap@:reads/SRP012006/SRS190130/SRX149441/SRR500543/SRR500543.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-01A-01D	DNA	EFO	SRS384998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B10	SRX216073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51930-FS3_L01.bam	SRR647036	@dbgap@:reads/SRP012006/SRS384998/SRX216073/SRR647036/SRR647036.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJLSP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLSP_NormalVsPrimary.png	4			
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-01A-01D	DNA	EFO	SRS384998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B10	SRX216073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51930-FS3_L01.bam	SRR647036	@dbgap@:reads/SRP012006/SRS384998/SRX216073/SRR647036/SRR647036.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLSP_NormalVsPrimary.png	4			
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-01A-01D	DNA	EFO	SRS384998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B10	SRX216073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51930-FS3_L01.bam	SRR647036	@dbgap@:reads/SRP012006/SRS384998/SRX216073/SRR647036/SRR647036.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLSP_NormalVsPrimary.png	4			
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-01A-01D	DNA	EFO	SRS384998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B10	SRX216073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51930-FS3_L01.bam	SRR647036	@dbgap@:reads/SRP012006/SRS384998/SRX216073/SRR647036/SRR647036.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJLSP_NormalVsPrimary.maf.txt	3
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-01A-01D	DNA	EFO	SRS384998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B10	SRX216073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51930-FS3_L01.bam	SRR647036	@dbgap@:reads/SRP012006/SRS384998/SRX216073/SRR647036/SRR647036.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-01A-01D	DNA	EFO	SRS384998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B10	SRX216073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51930-FS3_L01.bam	SRR647036	@dbgap@:reads/SRP012006/SRS384998/SRX216073/SRR647036/SRR647036.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-01A-01D	DNA	EFO	SRS384998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B10	SRX216073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51930-FS3_L01.bam	SRR647036	@dbgap@:reads/SRP012006/SRS384998/SRX216073/SRR647036/SRR647036.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-01A-01D	DNA	EFO	SRS384998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B10	SRX216073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51930-FS3_L01.bam	SRR647036	@dbgap@:reads/SRP012006/SRS384998/SRX216073/SRR647036/SRR647036.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-01A-01D	DNA	EFO	SRS384998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B10	SRX216073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51930-FS3_L01.bam	SRR647036	@dbgap@:reads/SRP012006/SRS384998/SRX216073/SRR647036/SRR647036.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-01A-01D	DNA	EFO	SRS384998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B10	SRX216073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51930-FS3_L01.bam	SRR647036	@dbgap@:reads/SRP012006/SRS384998/SRX216073/SRR647036/SRR647036.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-01A-01D	DNA	EFO	SRS384998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B10	SRX216073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51930-FS3_L01.bam	SRR647036	@dbgap@:reads/SRP012006/SRS384998/SRX216073/SRR647036/SRR647036.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-01A-01D	DNA	EFO	SRS384998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B10	SRX216073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51930-FS3_L01.bam	SRR647036	@dbgap@:reads/SRP012006/SRS384998/SRX216073/SRR647036/SRR647036.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-01A-01D	DNA	EFO	SRS384998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B10	SRX216073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51930-FS3_L01.bam	SRR647036	@dbgap@:reads/SRP012006/SRS384998/SRX216073/SRR647036/SRR647036.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-01A-01D	DNA	EFO	SRS384998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B10	SRX216073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51930-FS3_L01.bam	SRR647036	@dbgap@:reads/SRP012006/SRS384998/SRX216073/SRR647036/SRR647036.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-01A-01D	DNA	EFO	SRS384998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B10	SRX216073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-01A-01D GS01073-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51930-FS3_L01.bam	SRR647036	@dbgap@:reads/SRP012006/SRS384998/SRX216073/SRR647036/SRR647036.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-11A-01D	DNA	EFO	SRS384997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H12	SRX216072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51929-FS3_L01.bam	SRR647028	@dbgap@:reads/SRP012006/SRS384997/SRX216072/SRR647028/SRR647028.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJLSP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLSP_NormalVsPrimary.png	4			
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-11A-01D	DNA	EFO	SRS384997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H12	SRX216072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51929-FS3_L01.bam	SRR647028	@dbgap@:reads/SRP012006/SRS384997/SRX216072/SRR647028/SRR647028.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLSP_NormalVsPrimary.png	4			
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-11A-01D	DNA	EFO	SRS384997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H12	SRX216072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51929-FS3_L01.bam	SRR647028	@dbgap@:reads/SRP012006/SRS384997/SRX216072/SRR647028/SRR647028.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLSP_NormalVsPrimary.png	4			
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-11A-01D	DNA	EFO	SRS384997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H12	SRX216072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51929-FS3_L01.bam	SRR647028	@dbgap@:reads/SRP012006/SRS384997/SRX216072/SRR647028/SRR647028.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJLSP_NormalVsPrimary.maf.txt	3
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-11A-01D	DNA	EFO	SRS384997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H12	SRX216072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51929-FS3_L01.bam	SRR647028	@dbgap@:reads/SRP012006/SRS384997/SRX216072/SRR647028/SRR647028.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-11A-01D	DNA	EFO	SRS384997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H12	SRX216072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51929-FS3_L01.bam	SRR647028	@dbgap@:reads/SRP012006/SRS384997/SRX216072/SRR647028/SRR647028.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-11A-01D	DNA	EFO	SRS384997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H12	SRX216072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51929-FS3_L01.bam	SRR647028	@dbgap@:reads/SRP012006/SRS384997/SRX216072/SRR647028/SRR647028.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-11A-01D	DNA	EFO	SRS384997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H12	SRX216072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51929-FS3_L01.bam	SRR647028	@dbgap@:reads/SRP012006/SRS384997/SRX216072/SRR647028/SRR647028.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-11A-01D	DNA	EFO	SRS384997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H12	SRX216072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51929-FS3_L01.bam	SRR647028	@dbgap@:reads/SRP012006/SRS384997/SRX216072/SRR647028/SRR647028.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-11A-01D	DNA	EFO	SRS384997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H12	SRX216072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51929-FS3_L01.bam	SRR647028	@dbgap@:reads/SRP012006/SRS384997/SRX216072/SRR647028/SRR647028.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-11A-01D	DNA	EFO	SRS384997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H12	SRX216072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51929-FS3_L01.bam	SRR647028	@dbgap@:reads/SRP012006/SRS384997/SRX216072/SRR647028/SRR647028.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-11A-01D	DNA	EFO	SRS384997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H12	SRX216072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51929-FS3_L01.bam	SRR647028	@dbgap@:reads/SRP012006/SRS384997/SRX216072/SRR647028/SRR647028.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-11A-01D	DNA	EFO	SRS384997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H12	SRX216072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51929-FS3_L01.bam	SRR647028	@dbgap@:reads/SRP012006/SRS384997/SRX216072/SRR647028/SRR647028.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-11A-01D	DNA	EFO	SRS384997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H12	SRX216072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51929-FS3_L01.bam	SRR647028	@dbgap@:reads/SRP012006/SRS384997/SRX216072/SRR647028/SRR647028.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-11A-01D	DNA	EFO	SRS384997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H12	SRX216072		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLSP-11A-01D GS01073-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51929-FS3_L01.bam	SRR647028	@dbgap@:reads/SRP012006/SRS384997/SRX216072/SRR647028/SRR647028.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-01A-01D	DNA	EFO	SRS301266	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E07	SRX193178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52022-FS3_L01.bam	SRR584092	@dbgap@:reads/SRP012006/SRS301266/SRX193178/SRR584092/SRR584092.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJLTH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLTH_NormalVsPrimary.png	4			
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-01A-01D	DNA	EFO	SRS301266	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E07	SRX193178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52022-FS3_L01.bam	SRR584092	@dbgap@:reads/SRP012006/SRS301266/SRX193178/SRR584092/SRR584092.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLTH_NormalVsPrimary.png	4			
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-01A-01D	DNA	EFO	SRS301266	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E07	SRX193178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52022-FS3_L01.bam	SRR584092	@dbgap@:reads/SRP012006/SRS301266/SRX193178/SRR584092/SRR584092.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLTH_NormalVsPrimary.png	4			
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-01A-01D	DNA	EFO	SRS301266	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E07	SRX193178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52022-FS3_L01.bam	SRR584092	@dbgap@:reads/SRP012006/SRS301266/SRX193178/SRR584092/SRR584092.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJLTH_NormalVsPrimary.maf.txt	3
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-01A-01D	DNA	EFO	SRS301266	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E07	SRX193178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52022-FS3_L01.bam	SRR584092	@dbgap@:reads/SRP012006/SRS301266/SRX193178/SRR584092/SRR584092.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-01A-01D	DNA	EFO	SRS301266	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E07	SRX193178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52022-FS3_L01.bam	SRR584092	@dbgap@:reads/SRP012006/SRS301266/SRX193178/SRR584092/SRR584092.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-01A-01D	DNA	EFO	SRS301266	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E07	SRX193178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52022-FS3_L01.bam	SRR584092	@dbgap@:reads/SRP012006/SRS301266/SRX193178/SRR584092/SRR584092.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-01A-01D	DNA	EFO	SRS301266	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E07	SRX193178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52022-FS3_L01.bam	SRR584092	@dbgap@:reads/SRP012006/SRS301266/SRX193178/SRR584092/SRR584092.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-01A-01D	DNA	EFO	SRS301266	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E07	SRX193178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52022-FS3_L01.bam	SRR584092	@dbgap@:reads/SRP012006/SRS301266/SRX193178/SRR584092/SRR584092.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-01A-01D	DNA	EFO	SRS301266	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E07	SRX193178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52022-FS3_L01.bam	SRR584092	@dbgap@:reads/SRP012006/SRS301266/SRX193178/SRR584092/SRR584092.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-01A-01D	DNA	EFO	SRS301266	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E07	SRX193178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52022-FS3_L01.bam	SRR584092	@dbgap@:reads/SRP012006/SRS301266/SRX193178/SRR584092/SRR584092.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-01A-01D	DNA	EFO	SRS301266	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E07	SRX193178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52022-FS3_L01.bam	SRR584092	@dbgap@:reads/SRP012006/SRS301266/SRX193178/SRR584092/SRR584092.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-01A-01D	DNA	EFO	SRS301266	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E07	SRX193178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52022-FS3_L01.bam	SRR584092	@dbgap@:reads/SRP012006/SRS301266/SRX193178/SRR584092/SRR584092.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-01A-01D	DNA	EFO	SRS301266	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E07	SRX193178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52022-FS3_L01.bam	SRR584092	@dbgap@:reads/SRP012006/SRS301266/SRX193178/SRR584092/SRR584092.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-01A-01D	DNA	EFO	SRS301266	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E07	SRX193178		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-01A-01D GS01073-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52022-FS3_L01.bam	SRR584092	@dbgap@:reads/SRP012006/SRS301266/SRX193178/SRR584092/SRR584092.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-11A-01D	DNA	EFO	SRS301267	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C10	SRX193177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52023-FS3_L01.bam	SRR584100	@dbgap@:reads/SRP012006/SRS301267/SRX193177/SRR584100/SRR584100.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJLTH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLTH_NormalVsPrimary.png	4			
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-11A-01D	DNA	EFO	SRS301267	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C10	SRX193177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52023-FS3_L01.bam	SRR584100	@dbgap@:reads/SRP012006/SRS301267/SRX193177/SRR584100/SRR584100.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLTH_NormalVsPrimary.png	4			
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-11A-01D	DNA	EFO	SRS301267	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C10	SRX193177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52023-FS3_L01.bam	SRR584100	@dbgap@:reads/SRP012006/SRS301267/SRX193177/SRR584100/SRR584100.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLTH_NormalVsPrimary.png	4			
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-11A-01D	DNA	EFO	SRS301267	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C10	SRX193177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52023-FS3_L01.bam	SRR584100	@dbgap@:reads/SRP012006/SRS301267/SRX193177/SRR584100/SRR584100.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJLTH_NormalVsPrimary.maf.txt	3
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-11A-01D	DNA	EFO	SRS301267	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C10	SRX193177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52023-FS3_L01.bam	SRR584100	@dbgap@:reads/SRP012006/SRS301267/SRX193177/SRR584100/SRR584100.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-11A-01D	DNA	EFO	SRS301267	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C10	SRX193177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52023-FS3_L01.bam	SRR584100	@dbgap@:reads/SRP012006/SRS301267/SRX193177/SRR584100/SRR584100.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-11A-01D	DNA	EFO	SRS301267	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C10	SRX193177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52023-FS3_L01.bam	SRR584100	@dbgap@:reads/SRP012006/SRS301267/SRX193177/SRR584100/SRR584100.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-11A-01D	DNA	EFO	SRS301267	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C10	SRX193177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52023-FS3_L01.bam	SRR584100	@dbgap@:reads/SRP012006/SRS301267/SRX193177/SRR584100/SRR584100.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-11A-01D	DNA	EFO	SRS301267	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C10	SRX193177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52023-FS3_L01.bam	SRR584100	@dbgap@:reads/SRP012006/SRS301267/SRX193177/SRR584100/SRR584100.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-11A-01D	DNA	EFO	SRS301267	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C10	SRX193177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52023-FS3_L01.bam	SRR584100	@dbgap@:reads/SRP012006/SRS301267/SRX193177/SRR584100/SRR584100.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-11A-01D	DNA	EFO	SRS301267	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C10	SRX193177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52023-FS3_L01.bam	SRR584100	@dbgap@:reads/SRP012006/SRS301267/SRX193177/SRR584100/SRR584100.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-11A-01D	DNA	EFO	SRS301267	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C10	SRX193177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52023-FS3_L01.bam	SRR584100	@dbgap@:reads/SRP012006/SRS301267/SRX193177/SRR584100/SRR584100.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-11A-01D	DNA	EFO	SRS301267	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C10	SRX193177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52023-FS3_L01.bam	SRR584100	@dbgap@:reads/SRP012006/SRS301267/SRX193177/SRR584100/SRR584100.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-11A-01D	DNA	EFO	SRS301267	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C10	SRX193177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52023-FS3_L01.bam	SRR584100	@dbgap@:reads/SRP012006/SRS301267/SRX193177/SRR584100/SRR584100.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-11A-01D	DNA	EFO	SRS301267	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C10	SRX193177		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTH-11A-01D GS01073-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52023-FS3_L01.bam	SRR584100	@dbgap@:reads/SRP012006/SRS301267/SRX193177/SRR584100/SRR584100.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-01A-01D	DNA	EFO	SRS190131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D02	SRX149451		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44537-FS3_L01.bam	SRR500602	@dbgap@:reads/SRP012006/SRS190131/SRX149451/SRR500602/SRR500602.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJLTI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLTI_NormalVsPrimary.png	4			
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-01A-01D	DNA	EFO	SRS190131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D02	SRX149451		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44537-FS3_L01.bam	SRR500602	@dbgap@:reads/SRP012006/SRS190131/SRX149451/SRR500602/SRR500602.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLTI_NormalVsPrimary.png	4			
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-01A-01D	DNA	EFO	SRS190131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D02	SRX149451		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44537-FS3_L01.bam	SRR500602	@dbgap@:reads/SRP012006/SRS190131/SRX149451/SRR500602/SRR500602.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLTI_NormalVsPrimary.png	4			
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-01A-01D	DNA	EFO	SRS190131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D02	SRX149451		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44537-FS3_L01.bam	SRR500602	@dbgap@:reads/SRP012006/SRS190131/SRX149451/SRR500602/SRR500602.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJLTI_NormalVsPrimary.maf.txt	3
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-01A-01D	DNA	EFO	SRS190131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D02	SRX149451		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44537-FS3_L01.bam	SRR500602	@dbgap@:reads/SRP012006/SRS190131/SRX149451/SRR500602/SRR500602.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-01A-01D	DNA	EFO	SRS190131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D02	SRX149451		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44537-FS3_L01.bam	SRR500602	@dbgap@:reads/SRP012006/SRS190131/SRX149451/SRR500602/SRR500602.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-01A-01D	DNA	EFO	SRS190131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D02	SRX149451		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44537-FS3_L01.bam	SRR500602	@dbgap@:reads/SRP012006/SRS190131/SRX149451/SRR500602/SRR500602.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-01A-01D	DNA	EFO	SRS190131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D02	SRX149451		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44537-FS3_L01.bam	SRR500602	@dbgap@:reads/SRP012006/SRS190131/SRX149451/SRR500602/SRR500602.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-01A-01D	DNA	EFO	SRS190131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D02	SRX149451		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44537-FS3_L01.bam	SRR500602	@dbgap@:reads/SRP012006/SRS190131/SRX149451/SRR500602/SRR500602.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-01A-01D	DNA	EFO	SRS190131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D02	SRX149451		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44537-FS3_L01.bam	SRR500602	@dbgap@:reads/SRP012006/SRS190131/SRX149451/SRR500602/SRR500602.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-01A-01D	DNA	EFO	SRS190131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D02	SRX149451		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44537-FS3_L01.bam	SRR500602	@dbgap@:reads/SRP012006/SRS190131/SRX149451/SRR500602/SRR500602.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-01A-01D	DNA	EFO	SRS190131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D02	SRX149451		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44537-FS3_L01.bam	SRR500602	@dbgap@:reads/SRP012006/SRS190131/SRX149451/SRR500602/SRR500602.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-01A-01D	DNA	EFO	SRS190131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D02	SRX149451		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44537-FS3_L01.bam	SRR500602	@dbgap@:reads/SRP012006/SRS190131/SRX149451/SRR500602/SRR500602.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-01A-01D	DNA	EFO	SRS190131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D02	SRX149451		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44537-FS3_L01.bam	SRR500602	@dbgap@:reads/SRP012006/SRS190131/SRX149451/SRR500602/SRR500602.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-01A-01D	DNA	EFO	SRS190131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D02	SRX149451		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-01A-01D GS00939-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44537-FS3_L01.bam	SRR500602	@dbgap@:reads/SRP012006/SRS190131/SRX149451/SRR500602/SRR500602.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-11A-01D	DNA	EFO	SRS190132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_G08	SRX149450		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44538-FS3_L01.bam	SRR500609	@dbgap@:reads/SRP012006/SRS190132/SRX149450/SRR500609/SRR500609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJLTI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLTI_NormalVsPrimary.png	4			
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-11A-01D	DNA	EFO	SRS190132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_G08	SRX149450		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44538-FS3_L01.bam	SRR500609	@dbgap@:reads/SRP012006/SRS190132/SRX149450/SRR500609/SRR500609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLTI_NormalVsPrimary.png	4			
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-11A-01D	DNA	EFO	SRS190132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_G08	SRX149450		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44538-FS3_L01.bam	SRR500609	@dbgap@:reads/SRP012006/SRS190132/SRX149450/SRR500609/SRR500609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLTI_NormalVsPrimary.png	4			
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-11A-01D	DNA	EFO	SRS190132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_G08	SRX149450		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44538-FS3_L01.bam	SRR500609	@dbgap@:reads/SRP012006/SRS190132/SRX149450/SRR500609/SRR500609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJLTI_NormalVsPrimary.maf.txt	3
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-11A-01D	DNA	EFO	SRS190132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_G08	SRX149450		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44538-FS3_L01.bam	SRR500609	@dbgap@:reads/SRP012006/SRS190132/SRX149450/SRR500609/SRR500609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-11A-01D	DNA	EFO	SRS190132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_G08	SRX149450		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44538-FS3_L01.bam	SRR500609	@dbgap@:reads/SRP012006/SRS190132/SRX149450/SRR500609/SRR500609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-11A-01D	DNA	EFO	SRS190132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_G08	SRX149450		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44538-FS3_L01.bam	SRR500609	@dbgap@:reads/SRP012006/SRS190132/SRX149450/SRR500609/SRR500609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-11A-01D	DNA	EFO	SRS190132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_G08	SRX149450		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44538-FS3_L01.bam	SRR500609	@dbgap@:reads/SRP012006/SRS190132/SRX149450/SRR500609/SRR500609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-11A-01D	DNA	EFO	SRS190132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_G08	SRX149450		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44538-FS3_L01.bam	SRR500609	@dbgap@:reads/SRP012006/SRS190132/SRX149450/SRR500609/SRR500609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-11A-01D	DNA	EFO	SRS190132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_G08	SRX149450		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44538-FS3_L01.bam	SRR500609	@dbgap@:reads/SRP012006/SRS190132/SRX149450/SRR500609/SRR500609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-11A-01D	DNA	EFO	SRS190132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_G08	SRX149450		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44538-FS3_L01.bam	SRR500609	@dbgap@:reads/SRP012006/SRS190132/SRX149450/SRR500609/SRR500609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-11A-01D	DNA	EFO	SRS190132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_G08	SRX149450		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44538-FS3_L01.bam	SRR500609	@dbgap@:reads/SRP012006/SRS190132/SRX149450/SRR500609/SRR500609.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-11A-01D	DNA	EFO	SRS190132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_G08	SRX149450		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44538-FS3_L01.bam	SRR500609	@dbgap@:reads/SRP012006/SRS190132/SRX149450/SRR500609/SRR500609.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-11A-01D	DNA	EFO	SRS190132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_G08	SRX149450		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44538-FS3_L01.bam	SRR500609	@dbgap@:reads/SRP012006/SRS190132/SRX149450/SRR500609/SRR500609.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-11A-01D	DNA	EFO	SRS190132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_G08	SRX149450		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLTI-11A-01D GS01004-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44538-FS3_L01.bam	SRR500609	@dbgap@:reads/SRP012006/SRS190132/SRX149450/SRR500609/SRR500609.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Metastatic Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-06A	organism part	EFO	Metastatic Tumor	NCIt	"Metastatic"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-06A-01D	DNA	EFO	SRS190133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E02	SRX149449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44536-FS3_L01.bam	SRR500587	@dbgap@:reads/SRP012006/SRS190133/SRX149449/SRR500587/SRR500587.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJLUJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLUJ_NormalVsPrimary.png	4			
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Metastatic Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-06A	organism part	EFO	Metastatic Tumor	NCIt	"Metastatic"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-06A-01D	DNA	EFO	SRS190133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E02	SRX149449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44536-FS3_L01.bam	SRR500587	@dbgap@:reads/SRP012006/SRS190133/SRX149449/SRR500587/SRR500587.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLUJ_NormalVsPrimary.png	4			
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Metastatic Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-06A	organism part	EFO	Metastatic Tumor	NCIt	"Metastatic"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-06A-01D	DNA	EFO	SRS190133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E02	SRX149449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44536-FS3_L01.bam	SRR500587	@dbgap@:reads/SRP012006/SRS190133/SRX149449/SRR500587/SRR500587.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLUJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLUJ_NormalVsPrimary.png	4			
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Metastatic Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-06A	organism part	EFO	Metastatic Tumor	NCIt	"Metastatic"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-06A-01D	DNA	EFO	SRS190133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E02	SRX149449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44536-FS3_L01.bam	SRR500587	@dbgap@:reads/SRP012006/SRS190133/SRX149449/SRR500587/SRR500587.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLUJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLUJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJLUJ_NormalVsPrimary.maf.txt	3
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Metastatic Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-06A	organism part	EFO	Metastatic Tumor	NCIt	"Metastatic"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-06A-01D	DNA	EFO	SRS190133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E02	SRX149449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44536-FS3_L01.bam	SRR500587	@dbgap@:reads/SRP012006/SRS190133/SRX149449/SRR500587/SRR500587.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLUJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLUJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Metastatic Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-06A	organism part	EFO	Metastatic Tumor	NCIt	"Metastatic"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-06A-01D	DNA	EFO	SRS190133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E02	SRX149449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44536-FS3_L01.bam	SRR500587	@dbgap@:reads/SRP012006/SRS190133/SRX149449/SRR500587/SRR500587.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLUJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLUJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Metastatic Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-06A	organism part	EFO	Metastatic Tumor	NCIt	"Metastatic"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-06A-01D	DNA	EFO	SRS190133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E02	SRX149449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44536-FS3_L01.bam	SRR500587	@dbgap@:reads/SRP012006/SRS190133/SRX149449/SRR500587/SRR500587.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLUJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLUJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Metastatic Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-06A	organism part	EFO	Metastatic Tumor	NCIt	"Metastatic"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-06A-01D	DNA	EFO	SRS190133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E02	SRX149449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44536-FS3_L01.bam	SRR500587	@dbgap@:reads/SRP012006/SRS190133/SRX149449/SRR500587/SRR500587.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLUJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLUJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Metastatic Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-06A	organism part	EFO	Metastatic Tumor	NCIt	"Metastatic"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-06A-01D	DNA	EFO	SRS190133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E02	SRX149449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44536-FS3_L01.bam	SRR500587	@dbgap@:reads/SRP012006/SRS190133/SRX149449/SRR500587/SRR500587.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLUJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLUJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Metastatic Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-06A	organism part	EFO	Metastatic Tumor	NCIt	"Metastatic"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-06A-01D	DNA	EFO	SRS190133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E02	SRX149449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44536-FS3_L01.bam	SRR500587	@dbgap@:reads/SRP012006/SRS190133/SRX149449/SRR500587/SRR500587.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLUJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLUJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Metastatic Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-06A	organism part	EFO	Metastatic Tumor	NCIt	"Metastatic"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-06A-01D	DNA	EFO	SRS190133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E02	SRX149449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44536-FS3_L01.bam	SRR500587	@dbgap@:reads/SRP012006/SRS190133/SRX149449/SRR500587/SRR500587.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLUJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLUJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Metastatic Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-06A	organism part	EFO	Metastatic Tumor	NCIt	"Metastatic"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-06A-01D	DNA	EFO	SRS190133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E02	SRX149449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44536-FS3_L01.bam	SRR500587	@dbgap@:reads/SRP012006/SRS190133/SRX149449/SRR500587/SRR500587.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLUJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLUJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Metastatic Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-06A	organism part	EFO	Metastatic Tumor	NCIt	"Metastatic"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-06A-01D	DNA	EFO	SRS190133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E02	SRX149449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44536-FS3_L01.bam	SRR500587	@dbgap@:reads/SRP012006/SRS190133/SRX149449/SRR500587/SRR500587.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Metastatic Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-06A	organism part	EFO	Metastatic Tumor	NCIt	"Metastatic"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-06A-01D	DNA	EFO	SRS190133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E02	SRX149449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44536-FS3_L01.bam	SRR500587	@dbgap@:reads/SRP012006/SRS190133/SRX149449/SRR500587/SRR500587.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Metastatic Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-06A	organism part	EFO	Metastatic Tumor	NCIt	"Metastatic"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-06A-01D	DNA	EFO	SRS190133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E02	SRX149449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-06A-01D GS00939-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44536-FS3_L01.bam	SRR500587	@dbgap@:reads/SRP012006/SRS190133/SRX149449/SRR500587/SRR500587.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-10A-01D	DNA	EFO	SRS190134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_H08	SRX149448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44535-FS3_L01.bam	SRR500595	@dbgap@:reads/SRP012006/SRS190134/SRX149448/SRR500595/SRR500595.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJLUJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLUJ_NormalVsPrimary.png	4			
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-10A-01D	DNA	EFO	SRS190134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_H08	SRX149448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44535-FS3_L01.bam	SRR500595	@dbgap@:reads/SRP012006/SRS190134/SRX149448/SRR500595/SRR500595.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLUJ_NormalVsPrimary.png	4			
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-10A-01D	DNA	EFO	SRS190134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_H08	SRX149448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44535-FS3_L01.bam	SRR500595	@dbgap@:reads/SRP012006/SRS190134/SRX149448/SRR500595/SRR500595.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLUJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJLUJ_NormalVsPrimary.png	4			
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-10A-01D	DNA	EFO	SRS190134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_H08	SRX149448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44535-FS3_L01.bam	SRR500595	@dbgap@:reads/SRP012006/SRS190134/SRX149448/SRR500595/SRR500595.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLUJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLUJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJLUJ_NormalVsPrimary.maf.txt	3
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-10A-01D	DNA	EFO	SRS190134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_H08	SRX149448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44535-FS3_L01.bam	SRR500595	@dbgap@:reads/SRP012006/SRS190134/SRX149448/SRR500595/SRR500595.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLUJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLUJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-10A-01D	DNA	EFO	SRS190134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_H08	SRX149448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44535-FS3_L01.bam	SRR500595	@dbgap@:reads/SRP012006/SRS190134/SRX149448/SRR500595/SRR500595.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLUJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLUJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-10A-01D	DNA	EFO	SRS190134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_H08	SRX149448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44535-FS3_L01.bam	SRR500595	@dbgap@:reads/SRP012006/SRS190134/SRX149448/SRR500595/SRR500595.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLUJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLUJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-10A-01D	DNA	EFO	SRS190134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_H08	SRX149448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44535-FS3_L01.bam	SRR500595	@dbgap@:reads/SRP012006/SRS190134/SRX149448/SRR500595/SRR500595.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLUJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLUJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-10A-01D	DNA	EFO	SRS190134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_H08	SRX149448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44535-FS3_L01.bam	SRR500595	@dbgap@:reads/SRP012006/SRS190134/SRX149448/SRR500595/SRR500595.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLUJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLUJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-10A-01D	DNA	EFO	SRS190134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_H08	SRX149448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44535-FS3_L01.bam	SRR500595	@dbgap@:reads/SRP012006/SRS190134/SRX149448/SRR500595/SRR500595.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLUJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLUJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-10A-01D	DNA	EFO	SRS190134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_H08	SRX149448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44535-FS3_L01.bam	SRR500595	@dbgap@:reads/SRP012006/SRS190134/SRX149448/SRR500595/SRR500595.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLUJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLUJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-10A-01D	DNA	EFO	SRS190134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_H08	SRX149448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44535-FS3_L01.bam	SRR500595	@dbgap@:reads/SRP012006/SRS190134/SRX149448/SRR500595/SRR500595.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJLUJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJLUJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-10A-01D	DNA	EFO	SRS190134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_H08	SRX149448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44535-FS3_L01.bam	SRR500595	@dbgap@:reads/SRP012006/SRS190134/SRX149448/SRR500595/SRR500595.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-10A-01D	DNA	EFO	SRS190134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_H08	SRX149448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44535-FS3_L01.bam	SRR500595	@dbgap@:reads/SRP012006/SRS190134/SRX149448/SRR500595/SRR500595.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-10A-01D	DNA	EFO	SRS190134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_H08	SRX149448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJLUJ-10A-01D GS01004-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44535-FS3_L01.bam	SRR500595	@dbgap@:reads/SRP012006/SRS190134/SRX149448/SRR500595/SRR500595.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-01A-01D	DNA	EFO	SRS190137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H06	SRX204270		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55111-FS3_L01.bam	SRR616449	@dbgap@:reads/SRP012006/SRS190137/SRX204270/SRR616449/SRR616449.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMEL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEL_NormalVsPrimary.png	4			
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-01A-01D	DNA	EFO	SRS190137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H06	SRX204270		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55111-FS3_L01.bam	SRR616449	@dbgap@:reads/SRP012006/SRS190137/SRX204270/SRR616449/SRR616449.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEL_NormalVsPrimary.png	4			
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-01A-01D	DNA	EFO	SRS190137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H06	SRX204270		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55111-FS3_L01.bam	SRR616449	@dbgap@:reads/SRP012006/SRS190137/SRX204270/SRR616449/SRR616449.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEL_NormalVsPrimary.png	4			
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-01A-01D	DNA	EFO	SRS190137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H06	SRX204270		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55111-FS3_L01.bam	SRR616449	@dbgap@:reads/SRP012006/SRS190137/SRX204270/SRR616449/SRR616449.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMEL_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-01A-01D	DNA	EFO	SRS190137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H06	SRX204270		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55111-FS3_L01.bam	SRR616449	@dbgap@:reads/SRP012006/SRS190137/SRX204270/SRR616449/SRR616449.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-01A-01D	DNA	EFO	SRS190137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H06	SRX204270		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55111-FS3_L01.bam	SRR616449	@dbgap@:reads/SRP012006/SRS190137/SRX204270/SRR616449/SRR616449.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-01A-01D	DNA	EFO	SRS190137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H06	SRX204270		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55111-FS3_L01.bam	SRR616449	@dbgap@:reads/SRP012006/SRS190137/SRX204270/SRR616449/SRR616449.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-01A-01D	DNA	EFO	SRS190137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H06	SRX204270		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55111-FS3_L01.bam	SRR616449	@dbgap@:reads/SRP012006/SRS190137/SRX204270/SRR616449/SRR616449.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-01A-01D	DNA	EFO	SRS190137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H06	SRX204270		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55111-FS3_L01.bam	SRR616449	@dbgap@:reads/SRP012006/SRS190137/SRX204270/SRR616449/SRR616449.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-01A-01D	DNA	EFO	SRS190137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H06	SRX204270		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55111-FS3_L01.bam	SRR616449	@dbgap@:reads/SRP012006/SRS190137/SRX204270/SRR616449/SRR616449.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-01A-01D	DNA	EFO	SRS190137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H06	SRX204270		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55111-FS3_L01.bam	SRR616449	@dbgap@:reads/SRP012006/SRS190137/SRX204270/SRR616449/SRR616449.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-01A-01D	DNA	EFO	SRS190137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H06	SRX204270		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55111-FS3_L01.bam	SRR616449	@dbgap@:reads/SRP012006/SRS190137/SRX204270/SRR616449/SRR616449.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-01A-01D	DNA	EFO	SRS190137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H06	SRX204270		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55111-FS3_L01.bam	SRR616449	@dbgap@:reads/SRP012006/SRS190137/SRX204270/SRR616449/SRR616449.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-01A-01D	DNA	EFO	SRS190137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H06	SRX204270		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55111-FS3_L01.bam	SRR616449	@dbgap@:reads/SRP012006/SRS190137/SRX204270/SRR616449/SRR616449.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-01A-01D	DNA	EFO	SRS190137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H06	SRX204270		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-01A-01D GS01103-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55111-FS3_L01.bam	SRR616449	@dbgap@:reads/SRP012006/SRS190137/SRX204270/SRR616449/SRR616449.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-10A-01D	DNA	EFO	SRS190138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A07	SRX204269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55113-FS3_L01.bam	SRR616456	@dbgap@:reads/SRP012006/SRS190138/SRX204269/SRR616456/SRR616456.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMEL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEL_NormalVsPrimary.png	4			
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-10A-01D	DNA	EFO	SRS190138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A07	SRX204269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55113-FS3_L01.bam	SRR616456	@dbgap@:reads/SRP012006/SRS190138/SRX204269/SRR616456/SRR616456.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEL_NormalVsPrimary.png	4			
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-10A-01D	DNA	EFO	SRS190138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A07	SRX204269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55113-FS3_L01.bam	SRR616456	@dbgap@:reads/SRP012006/SRS190138/SRX204269/SRR616456/SRR616456.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEL_NormalVsPrimary.png	4			
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-10A-01D	DNA	EFO	SRS190138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A07	SRX204269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55113-FS3_L01.bam	SRR616456	@dbgap@:reads/SRP012006/SRS190138/SRX204269/SRR616456/SRR616456.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMEL_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-10A-01D	DNA	EFO	SRS190138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A07	SRX204269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55113-FS3_L01.bam	SRR616456	@dbgap@:reads/SRP012006/SRS190138/SRX204269/SRR616456/SRR616456.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-10A-01D	DNA	EFO	SRS190138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A07	SRX204269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55113-FS3_L01.bam	SRR616456	@dbgap@:reads/SRP012006/SRS190138/SRX204269/SRR616456/SRR616456.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-10A-01D	DNA	EFO	SRS190138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A07	SRX204269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55113-FS3_L01.bam	SRR616456	@dbgap@:reads/SRP012006/SRS190138/SRX204269/SRR616456/SRR616456.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-10A-01D	DNA	EFO	SRS190138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A07	SRX204269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55113-FS3_L01.bam	SRR616456	@dbgap@:reads/SRP012006/SRS190138/SRX204269/SRR616456/SRR616456.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-10A-01D	DNA	EFO	SRS190138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A07	SRX204269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55113-FS3_L01.bam	SRR616456	@dbgap@:reads/SRP012006/SRS190138/SRX204269/SRR616456/SRR616456.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-10A-01D	DNA	EFO	SRS190138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A07	SRX204269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55113-FS3_L01.bam	SRR616456	@dbgap@:reads/SRP012006/SRS190138/SRX204269/SRR616456/SRR616456.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-10A-01D	DNA	EFO	SRS190138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A07	SRX204269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55113-FS3_L01.bam	SRR616456	@dbgap@:reads/SRP012006/SRS190138/SRX204269/SRR616456/SRR616456.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-10A-01D	DNA	EFO	SRS190138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A07	SRX204269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55113-FS3_L01.bam	SRR616456	@dbgap@:reads/SRP012006/SRS190138/SRX204269/SRR616456/SRR616456.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-10A-01D	DNA	EFO	SRS190138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A07	SRX204269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55113-FS3_L01.bam	SRR616456	@dbgap@:reads/SRP012006/SRS190138/SRX204269/SRR616456/SRR616456.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-10A-01D	DNA	EFO	SRS190138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A07	SRX204269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55113-FS3_L01.bam	SRR616456	@dbgap@:reads/SRP012006/SRS190138/SRX204269/SRR616456/SRR616456.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-10A-01D	DNA	EFO	SRS190138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A07	SRX204269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEL-10A-01D GS01103-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55113-FS3_L01.bam	SRR616456	@dbgap@:reads/SRP012006/SRS190138/SRX204269/SRR616456/SRR616456.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C10	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMEN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEN_NormalVsPrimary.png	4			
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C10	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEN_NormalVsPrimary.png	4			
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C10	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEN_NormalVsPrimary.png	4			
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C10	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C10	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C10	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C10	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C10	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C10	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C10	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C10	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C10	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C10	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C10	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C10	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00667-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C05	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMEN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEN_NormalVsPrimary.png	4			
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C05	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEN_NormalVsPrimary.png	4			
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C05	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEN_NormalVsPrimary.png	4			
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C05	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C05	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C05	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C05	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C05	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C05	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C05	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C05	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C05	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C05	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C05	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C05	SRX130074		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-01A-01D GS00673-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21801-FS3_L01.bam	SRR445885	@dbgap@:reads/SRP012006/SRS118131/SRX130074/SRR445885/SRR445885.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B06	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMEN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEN_NormalVsPrimary.png	4			
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B06	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEN_NormalVsPrimary.png	4			
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B06	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEN_NormalVsPrimary.png	4			
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B06	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B06	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B06	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B06	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B06	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B06	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B06	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B06	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B06	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B06	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B06	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_B06	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00673-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_B10	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMEN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEN_NormalVsPrimary.png	4			
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_B10	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEN_NormalVsPrimary.png	4			
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_B10	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEN_NormalVsPrimary.png	4			
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_B10	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_B10	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_B10	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_B10	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_B10	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_B10	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_B10	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_B10	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_B10	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_B10	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_B10	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_B10	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00677-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C11	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMEN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEN_NormalVsPrimary.png	4			
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C11	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEN_NormalVsPrimary.png	4			
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C11	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEN_NormalVsPrimary.png	4			
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C11	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C11	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C11	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C11	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C11	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C11	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C11	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C11	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C11	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C11	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C11	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-10A-01D	DNA	EFO	SRS118132	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_C11	SRX130073		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEN-10A-01D GS00667-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS22552-FS3_L01.bam	SRR445893	@dbgap@:reads/SRP012006/SRS118132/SRX130073/SRR445893/SRR445893.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01D	DNA	EFO	SRS190139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F02	SRX149440		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44664-FS3_L01.bam	SRR500523	@dbgap@:reads/SRP012006/SRS190139/SRX149440/SRR500523/SRR500523.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMEP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEP_NormalVsPrimary.png	4			
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01D	DNA	EFO	SRS190139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F02	SRX149440		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44664-FS3_L01.bam	SRR500523	@dbgap@:reads/SRP012006/SRS190139/SRX149440/SRR500523/SRR500523.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEP_NormalVsPrimary.png	4			
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01D	DNA	EFO	SRS190139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F02	SRX149440		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44664-FS3_L01.bam	SRR500523	@dbgap@:reads/SRP012006/SRS190139/SRX149440/SRR500523/SRR500523.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEP_NormalVsPrimary.png	4			
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01D	DNA	EFO	SRS190139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F02	SRX149440		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44664-FS3_L01.bam	SRR500523	@dbgap@:reads/SRP012006/SRS190139/SRX149440/SRR500523/SRR500523.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMEP_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01D	DNA	EFO	SRS190139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F02	SRX149440		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44664-FS3_L01.bam	SRR500523	@dbgap@:reads/SRP012006/SRS190139/SRX149440/SRR500523/SRR500523.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01D	DNA	EFO	SRS190139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F02	SRX149440		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44664-FS3_L01.bam	SRR500523	@dbgap@:reads/SRP012006/SRS190139/SRX149440/SRR500523/SRR500523.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01D	DNA	EFO	SRS190139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F02	SRX149440		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44664-FS3_L01.bam	SRR500523	@dbgap@:reads/SRP012006/SRS190139/SRX149440/SRR500523/SRR500523.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01D	DNA	EFO	SRS190139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F02	SRX149440		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44664-FS3_L01.bam	SRR500523	@dbgap@:reads/SRP012006/SRS190139/SRX149440/SRR500523/SRR500523.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01D	DNA	EFO	SRS190139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F02	SRX149440		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44664-FS3_L01.bam	SRR500523	@dbgap@:reads/SRP012006/SRS190139/SRX149440/SRR500523/SRR500523.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01D	DNA	EFO	SRS190139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F02	SRX149440		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44664-FS3_L01.bam	SRR500523	@dbgap@:reads/SRP012006/SRS190139/SRX149440/SRR500523/SRR500523.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01D	DNA	EFO	SRS190139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F02	SRX149440		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44664-FS3_L01.bam	SRR500523	@dbgap@:reads/SRP012006/SRS190139/SRX149440/SRR500523/SRR500523.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01D	DNA	EFO	SRS190139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F02	SRX149440		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44664-FS3_L01.bam	SRR500523	@dbgap@:reads/SRP012006/SRS190139/SRX149440/SRR500523/SRR500523.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01D	DNA	EFO	SRS190139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F02	SRX149440		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44664-FS3_L01.bam	SRR500523	@dbgap@:reads/SRP012006/SRS190139/SRX149440/SRR500523/SRR500523.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01D	DNA	EFO	SRS190139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F02	SRX149440		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44664-FS3_L01.bam	SRR500523	@dbgap@:reads/SRP012006/SRS190139/SRX149440/SRR500523/SRR500523.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01D	DNA	EFO	SRS190139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F02	SRX149440		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-01A-01D GS00939-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44664-FS3_L01.bam	SRR500523	@dbgap@:reads/SRP012006/SRS190139/SRX149440/SRR500523/SRR500523.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-11A-01D	DNA	EFO	SRS190140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_A09	SRX149439		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44534-FS3_L01.bam	SRR500529	@dbgap@:reads/SRP012006/SRS190140/SRX149439/SRR500529/SRR500529.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMEP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEP_NormalVsPrimary.png	4			
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-11A-01D	DNA	EFO	SRS190140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_A09	SRX149439		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44534-FS3_L01.bam	SRR500529	@dbgap@:reads/SRP012006/SRS190140/SRX149439/SRR500529/SRR500529.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEP_NormalVsPrimary.png	4			
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-11A-01D	DNA	EFO	SRS190140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_A09	SRX149439		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44534-FS3_L01.bam	SRR500529	@dbgap@:reads/SRP012006/SRS190140/SRX149439/SRR500529/SRR500529.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMEP_NormalVsPrimary.png	4			
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-11A-01D	DNA	EFO	SRS190140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_A09	SRX149439		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44534-FS3_L01.bam	SRR500529	@dbgap@:reads/SRP012006/SRS190140/SRX149439/SRR500529/SRR500529.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMEP_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-11A-01D	DNA	EFO	SRS190140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_A09	SRX149439		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44534-FS3_L01.bam	SRR500529	@dbgap@:reads/SRP012006/SRS190140/SRX149439/SRR500529/SRR500529.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-11A-01D	DNA	EFO	SRS190140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_A09	SRX149439		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44534-FS3_L01.bam	SRR500529	@dbgap@:reads/SRP012006/SRS190140/SRX149439/SRR500529/SRR500529.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-11A-01D	DNA	EFO	SRS190140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_A09	SRX149439		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44534-FS3_L01.bam	SRR500529	@dbgap@:reads/SRP012006/SRS190140/SRX149439/SRR500529/SRR500529.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-11A-01D	DNA	EFO	SRS190140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_A09	SRX149439		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44534-FS3_L01.bam	SRR500529	@dbgap@:reads/SRP012006/SRS190140/SRX149439/SRR500529/SRR500529.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-11A-01D	DNA	EFO	SRS190140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_A09	SRX149439		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44534-FS3_L01.bam	SRR500529	@dbgap@:reads/SRP012006/SRS190140/SRX149439/SRR500529/SRR500529.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-11A-01D	DNA	EFO	SRS190140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_A09	SRX149439		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44534-FS3_L01.bam	SRR500529	@dbgap@:reads/SRP012006/SRS190140/SRX149439/SRR500529/SRR500529.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-11A-01D	DNA	EFO	SRS190140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_A09	SRX149439		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44534-FS3_L01.bam	SRR500529	@dbgap@:reads/SRP012006/SRS190140/SRX149439/SRR500529/SRR500529.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-11A-01D	DNA	EFO	SRS190140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_A09	SRX149439		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44534-FS3_L01.bam	SRR500529	@dbgap@:reads/SRP012006/SRS190140/SRX149439/SRR500529/SRR500529.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-11A-01D	DNA	EFO	SRS190140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_A09	SRX149439		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44534-FS3_L01.bam	SRR500529	@dbgap@:reads/SRP012006/SRS190140/SRX149439/SRR500529/SRR500529.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-11A-01D	DNA	EFO	SRS190140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_A09	SRX149439		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44534-FS3_L01.bam	SRR500529	@dbgap@:reads/SRP012006/SRS190140/SRX149439/SRR500529/SRR500529.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-11A-01D	DNA	EFO	SRS190140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_A09	SRX149439		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMEP-11A-01D GS01004-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44534-FS3_L01.bam	SRR500529	@dbgap@:reads/SRP012006/SRS190140/SRX149439/SRR500529/SRR500529.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-01A-01D	DNA	EFO	SRS190141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H02	SRX149444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44661-FS3_L01.bam	SRR500550	@dbgap@:reads/SRP012006/SRS190141/SRX149444/SRR500550/SRR500550.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMFU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMFU_NormalVsPrimary.png	4			
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-01A-01D	DNA	EFO	SRS190141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H02	SRX149444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44661-FS3_L01.bam	SRR500550	@dbgap@:reads/SRP012006/SRS190141/SRX149444/SRR500550/SRR500550.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMFU_NormalVsPrimary.png	4			
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-01A-01D	DNA	EFO	SRS190141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H02	SRX149444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44661-FS3_L01.bam	SRR500550	@dbgap@:reads/SRP012006/SRS190141/SRX149444/SRR500550/SRR500550.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMFU_NormalVsPrimary.png	4			
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-01A-01D	DNA	EFO	SRS190141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H02	SRX149444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44661-FS3_L01.bam	SRR500550	@dbgap@:reads/SRP012006/SRS190141/SRX149444/SRR500550/SRR500550.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMFU_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-01A-01D	DNA	EFO	SRS190141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H02	SRX149444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44661-FS3_L01.bam	SRR500550	@dbgap@:reads/SRP012006/SRS190141/SRX149444/SRR500550/SRR500550.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-01A-01D	DNA	EFO	SRS190141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H02	SRX149444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44661-FS3_L01.bam	SRR500550	@dbgap@:reads/SRP012006/SRS190141/SRX149444/SRR500550/SRR500550.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-01A-01D	DNA	EFO	SRS190141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H02	SRX149444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44661-FS3_L01.bam	SRR500550	@dbgap@:reads/SRP012006/SRS190141/SRX149444/SRR500550/SRR500550.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-01A-01D	DNA	EFO	SRS190141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H02	SRX149444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44661-FS3_L01.bam	SRR500550	@dbgap@:reads/SRP012006/SRS190141/SRX149444/SRR500550/SRR500550.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-01A-01D	DNA	EFO	SRS190141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H02	SRX149444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44661-FS3_L01.bam	SRR500550	@dbgap@:reads/SRP012006/SRS190141/SRX149444/SRR500550/SRR500550.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-01A-01D	DNA	EFO	SRS190141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H02	SRX149444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44661-FS3_L01.bam	SRR500550	@dbgap@:reads/SRP012006/SRS190141/SRX149444/SRR500550/SRR500550.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-01A-01D	DNA	EFO	SRS190141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H02	SRX149444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44661-FS3_L01.bam	SRR500550	@dbgap@:reads/SRP012006/SRS190141/SRX149444/SRR500550/SRR500550.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-01A-01D	DNA	EFO	SRS190141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H02	SRX149444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44661-FS3_L01.bam	SRR500550	@dbgap@:reads/SRP012006/SRS190141/SRX149444/SRR500550/SRR500550.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-01A-01D	DNA	EFO	SRS190141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H02	SRX149444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44661-FS3_L01.bam	SRR500550	@dbgap@:reads/SRP012006/SRS190141/SRX149444/SRR500550/SRR500550.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-01A-01D	DNA	EFO	SRS190141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H02	SRX149444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44661-FS3_L01.bam	SRR500550	@dbgap@:reads/SRP012006/SRS190141/SRX149444/SRR500550/SRR500550.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-01A-01D	DNA	EFO	SRS190141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H02	SRX149444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-01A-01D GS00939-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44661-FS3_L01.bam	SRR500550	@dbgap@:reads/SRP012006/SRS190141/SRX149444/SRR500550/SRR500550.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-11A-01D	DNA	EFO	SRS190142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_B09	SRX149443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44660-FS3_L01.bam	SRR500557	@dbgap@:reads/SRP012006/SRS190142/SRX149443/SRR500557/SRR500557.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMFU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMFU_NormalVsPrimary.png	4			
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-11A-01D	DNA	EFO	SRS190142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_B09	SRX149443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44660-FS3_L01.bam	SRR500557	@dbgap@:reads/SRP012006/SRS190142/SRX149443/SRR500557/SRR500557.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMFU_NormalVsPrimary.png	4			
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-11A-01D	DNA	EFO	SRS190142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_B09	SRX149443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44660-FS3_L01.bam	SRR500557	@dbgap@:reads/SRP012006/SRS190142/SRX149443/SRR500557/SRR500557.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMFU_NormalVsPrimary.png	4			
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-11A-01D	DNA	EFO	SRS190142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_B09	SRX149443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44660-FS3_L01.bam	SRR500557	@dbgap@:reads/SRP012006/SRS190142/SRX149443/SRR500557/SRR500557.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMFU_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-11A-01D	DNA	EFO	SRS190142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_B09	SRX149443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44660-FS3_L01.bam	SRR500557	@dbgap@:reads/SRP012006/SRS190142/SRX149443/SRR500557/SRR500557.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-11A-01D	DNA	EFO	SRS190142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_B09	SRX149443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44660-FS3_L01.bam	SRR500557	@dbgap@:reads/SRP012006/SRS190142/SRX149443/SRR500557/SRR500557.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-11A-01D	DNA	EFO	SRS190142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_B09	SRX149443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44660-FS3_L01.bam	SRR500557	@dbgap@:reads/SRP012006/SRS190142/SRX149443/SRR500557/SRR500557.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-11A-01D	DNA	EFO	SRS190142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_B09	SRX149443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44660-FS3_L01.bam	SRR500557	@dbgap@:reads/SRP012006/SRS190142/SRX149443/SRR500557/SRR500557.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-11A-01D	DNA	EFO	SRS190142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_B09	SRX149443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44660-FS3_L01.bam	SRR500557	@dbgap@:reads/SRP012006/SRS190142/SRX149443/SRR500557/SRR500557.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-11A-01D	DNA	EFO	SRS190142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_B09	SRX149443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44660-FS3_L01.bam	SRR500557	@dbgap@:reads/SRP012006/SRS190142/SRX149443/SRR500557/SRR500557.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-11A-01D	DNA	EFO	SRS190142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_B09	SRX149443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44660-FS3_L01.bam	SRR500557	@dbgap@:reads/SRP012006/SRS190142/SRX149443/SRR500557/SRR500557.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-11A-01D	DNA	EFO	SRS190142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_B09	SRX149443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44660-FS3_L01.bam	SRR500557	@dbgap@:reads/SRP012006/SRS190142/SRX149443/SRR500557/SRR500557.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-11A-01D	DNA	EFO	SRS190142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_B09	SRX149443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44660-FS3_L01.bam	SRR500557	@dbgap@:reads/SRP012006/SRS190142/SRX149443/SRR500557/SRR500557.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-11A-01D	DNA	EFO	SRS190142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_B09	SRX149443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44660-FS3_L01.bam	SRR500557	@dbgap@:reads/SRP012006/SRS190142/SRX149443/SRR500557/SRR500557.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-11A-01D	DNA	EFO	SRS190142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_B09	SRX149443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFU-11A-01D GS01004-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44660-FS3_L01.bam	SRR500557	@dbgap@:reads/SRP012006/SRS190142/SRX149443/SRR500557/SRR500557.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-01A-01D	DNA	EFO	SRS301272	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F07	SRX202115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52020-FS3_L01.bam	SRR610246	@dbgap@:reads/SRP012006/SRS301272/SRX202115/SRR610246/SRR610246.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMFY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMFY_NormalVsPrimary.png	4			
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-01A-01D	DNA	EFO	SRS301272	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F07	SRX202115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52020-FS3_L01.bam	SRR610246	@dbgap@:reads/SRP012006/SRS301272/SRX202115/SRR610246/SRR610246.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMFY_NormalVsPrimary.png	4			
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-01A-01D	DNA	EFO	SRS301272	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F07	SRX202115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52020-FS3_L01.bam	SRR610246	@dbgap@:reads/SRP012006/SRS301272/SRX202115/SRR610246/SRR610246.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMFY_NormalVsPrimary.png	4			
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-01A-01D	DNA	EFO	SRS301272	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F07	SRX202115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52020-FS3_L01.bam	SRR610246	@dbgap@:reads/SRP012006/SRS301272/SRX202115/SRR610246/SRR610246.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMFY_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-01A-01D	DNA	EFO	SRS301272	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F07	SRX202115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52020-FS3_L01.bam	SRR610246	@dbgap@:reads/SRP012006/SRS301272/SRX202115/SRR610246/SRR610246.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-01A-01D	DNA	EFO	SRS301272	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F07	SRX202115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52020-FS3_L01.bam	SRR610246	@dbgap@:reads/SRP012006/SRS301272/SRX202115/SRR610246/SRR610246.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-01A-01D	DNA	EFO	SRS301272	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F07	SRX202115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52020-FS3_L01.bam	SRR610246	@dbgap@:reads/SRP012006/SRS301272/SRX202115/SRR610246/SRR610246.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-01A-01D	DNA	EFO	SRS301272	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F07	SRX202115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52020-FS3_L01.bam	SRR610246	@dbgap@:reads/SRP012006/SRS301272/SRX202115/SRR610246/SRR610246.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-01A-01D	DNA	EFO	SRS301272	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F07	SRX202115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52020-FS3_L01.bam	SRR610246	@dbgap@:reads/SRP012006/SRS301272/SRX202115/SRR610246/SRR610246.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-01A-01D	DNA	EFO	SRS301272	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F07	SRX202115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52020-FS3_L01.bam	SRR610246	@dbgap@:reads/SRP012006/SRS301272/SRX202115/SRR610246/SRR610246.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-01A-01D	DNA	EFO	SRS301272	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F07	SRX202115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52020-FS3_L01.bam	SRR610246	@dbgap@:reads/SRP012006/SRS301272/SRX202115/SRR610246/SRR610246.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-01A-01D	DNA	EFO	SRS301272	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F07	SRX202115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52020-FS3_L01.bam	SRR610246	@dbgap@:reads/SRP012006/SRS301272/SRX202115/SRR610246/SRR610246.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-01A-01D	DNA	EFO	SRS301272	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F07	SRX202115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52020-FS3_L01.bam	SRR610246	@dbgap@:reads/SRP012006/SRS301272/SRX202115/SRR610246/SRR610246.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-01A-01D	DNA	EFO	SRS301272	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F07	SRX202115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52020-FS3_L01.bam	SRR610246	@dbgap@:reads/SRP012006/SRS301272/SRX202115/SRR610246/SRR610246.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-01A-01D	DNA	EFO	SRS301272	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F07	SRX202115		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-01A-01D GS01073-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52020-FS3_L01.bam	SRR610246	@dbgap@:reads/SRP012006/SRS301272/SRX202115/SRR610246/SRR610246.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-11A-01D	DNA	EFO	SRS373609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E10	SRX202114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52021-FS3_L01.bam	SRR610254	@dbgap@:reads/SRP012006/SRS373609/SRX202114/SRR610254/SRR610254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMFY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMFY_NormalVsPrimary.png	4			
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-11A-01D	DNA	EFO	SRS373609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E10	SRX202114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52021-FS3_L01.bam	SRR610254	@dbgap@:reads/SRP012006/SRS373609/SRX202114/SRR610254/SRR610254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMFY_NormalVsPrimary.png	4			
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-11A-01D	DNA	EFO	SRS373609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E10	SRX202114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52021-FS3_L01.bam	SRR610254	@dbgap@:reads/SRP012006/SRS373609/SRX202114/SRR610254/SRR610254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMFY_NormalVsPrimary.png	4			
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-11A-01D	DNA	EFO	SRS373609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E10	SRX202114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52021-FS3_L01.bam	SRR610254	@dbgap@:reads/SRP012006/SRS373609/SRX202114/SRR610254/SRR610254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMFY_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-11A-01D	DNA	EFO	SRS373609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E10	SRX202114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52021-FS3_L01.bam	SRR610254	@dbgap@:reads/SRP012006/SRS373609/SRX202114/SRR610254/SRR610254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-11A-01D	DNA	EFO	SRS373609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E10	SRX202114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52021-FS3_L01.bam	SRR610254	@dbgap@:reads/SRP012006/SRS373609/SRX202114/SRR610254/SRR610254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-11A-01D	DNA	EFO	SRS373609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E10	SRX202114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52021-FS3_L01.bam	SRR610254	@dbgap@:reads/SRP012006/SRS373609/SRX202114/SRR610254/SRR610254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-11A-01D	DNA	EFO	SRS373609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E10	SRX202114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52021-FS3_L01.bam	SRR610254	@dbgap@:reads/SRP012006/SRS373609/SRX202114/SRR610254/SRR610254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-11A-01D	DNA	EFO	SRS373609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E10	SRX202114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52021-FS3_L01.bam	SRR610254	@dbgap@:reads/SRP012006/SRS373609/SRX202114/SRR610254/SRR610254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-11A-01D	DNA	EFO	SRS373609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E10	SRX202114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52021-FS3_L01.bam	SRR610254	@dbgap@:reads/SRP012006/SRS373609/SRX202114/SRR610254/SRR610254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-11A-01D	DNA	EFO	SRS373609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E10	SRX202114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52021-FS3_L01.bam	SRR610254	@dbgap@:reads/SRP012006/SRS373609/SRX202114/SRR610254/SRR610254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-11A-01D	DNA	EFO	SRS373609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E10	SRX202114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52021-FS3_L01.bam	SRR610254	@dbgap@:reads/SRP012006/SRS373609/SRX202114/SRR610254/SRR610254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-11A-01D	DNA	EFO	SRS373609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E10	SRX202114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52021-FS3_L01.bam	SRR610254	@dbgap@:reads/SRP012006/SRS373609/SRX202114/SRR610254/SRR610254.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-11A-01D	DNA	EFO	SRS373609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E10	SRX202114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52021-FS3_L01.bam	SRR610254	@dbgap@:reads/SRP012006/SRS373609/SRX202114/SRR610254/SRR610254.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-11A-01D	DNA	EFO	SRS373609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E10	SRX202114		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMFY-11A-01D GS01073-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52021-FS3_L01.bam	SRR610254	@dbgap@:reads/SRP012006/SRS373609/SRX202114/SRR610254/SRR610254.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-01A-01D	DNA	EFO	SRS375429	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D06	SRX204517		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54852-FS3_L01.bam	SRR616893	@dbgap@:reads/SRP012006/SRS375429/SRX204517/SRR616893/SRR616893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMJK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMJK_NormalVsPrimary.png	4			
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-01A-01D	DNA	EFO	SRS375429	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D06	SRX204517		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54852-FS3_L01.bam	SRR616893	@dbgap@:reads/SRP012006/SRS375429/SRX204517/SRR616893/SRR616893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMJK_NormalVsPrimary.png	4			
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-01A-01D	DNA	EFO	SRS375429	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D06	SRX204517		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54852-FS3_L01.bam	SRR616893	@dbgap@:reads/SRP012006/SRS375429/SRX204517/SRR616893/SRR616893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMJK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMJK_NormalVsPrimary.png	4			
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-01A-01D	DNA	EFO	SRS375429	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D06	SRX204517		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54852-FS3_L01.bam	SRR616893	@dbgap@:reads/SRP012006/SRS375429/SRX204517/SRR616893/SRR616893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMJK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMJK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMJK_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-01A-01D	DNA	EFO	SRS375429	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D06	SRX204517		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54852-FS3_L01.bam	SRR616893	@dbgap@:reads/SRP012006/SRS375429/SRX204517/SRR616893/SRR616893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMJK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMJK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-01A-01D	DNA	EFO	SRS375429	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D06	SRX204517		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54852-FS3_L01.bam	SRR616893	@dbgap@:reads/SRP012006/SRS375429/SRX204517/SRR616893/SRR616893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMJK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMJK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-01A-01D	DNA	EFO	SRS375429	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D06	SRX204517		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54852-FS3_L01.bam	SRR616893	@dbgap@:reads/SRP012006/SRS375429/SRX204517/SRR616893/SRR616893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMJK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMJK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-01A-01D	DNA	EFO	SRS375429	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D06	SRX204517		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54852-FS3_L01.bam	SRR616893	@dbgap@:reads/SRP012006/SRS375429/SRX204517/SRR616893/SRR616893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMJK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMJK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-01A-01D	DNA	EFO	SRS375429	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D06	SRX204517		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54852-FS3_L01.bam	SRR616893	@dbgap@:reads/SRP012006/SRS375429/SRX204517/SRR616893/SRR616893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMJK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMJK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-01A-01D	DNA	EFO	SRS375429	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D06	SRX204517		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54852-FS3_L01.bam	SRR616893	@dbgap@:reads/SRP012006/SRS375429/SRX204517/SRR616893/SRR616893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMJK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMJK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-01A-01D	DNA	EFO	SRS375429	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D06	SRX204517		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54852-FS3_L01.bam	SRR616893	@dbgap@:reads/SRP012006/SRS375429/SRX204517/SRR616893/SRR616893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMJK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMJK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-01A-01D	DNA	EFO	SRS375429	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D06	SRX204517		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54852-FS3_L01.bam	SRR616893	@dbgap@:reads/SRP012006/SRS375429/SRX204517/SRR616893/SRR616893.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMJK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMJK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-01A-01D	DNA	EFO	SRS375429	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D06	SRX204517		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54852-FS3_L01.bam	SRR616893	@dbgap@:reads/SRP012006/SRS375429/SRX204517/SRR616893/SRR616893.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-01A-01D	DNA	EFO	SRS375429	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D06	SRX204517		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54852-FS3_L01.bam	SRR616893	@dbgap@:reads/SRP012006/SRS375429/SRX204517/SRR616893/SRR616893.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-01A-01D	DNA	EFO	SRS375429	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D06	SRX204517		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-01A-01D GS01103-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54852-FS3_L01.bam	SRR616893	@dbgap@:reads/SRP012006/SRS375429/SRX204517/SRR616893/SRR616893.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-10A-01D	DNA	EFO	SRS375428	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E06	SRX204516		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55651-FS3_L01.bam	SRR616900	@dbgap@:reads/SRP012006/SRS375428/SRX204516/SRR616900/SRR616900.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMJK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMJK_NormalVsPrimary.png	4			
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-10A-01D	DNA	EFO	SRS375428	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E06	SRX204516		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55651-FS3_L01.bam	SRR616900	@dbgap@:reads/SRP012006/SRS375428/SRX204516/SRR616900/SRR616900.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMJK_NormalVsPrimary.png	4			
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-10A-01D	DNA	EFO	SRS375428	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E06	SRX204516		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55651-FS3_L01.bam	SRR616900	@dbgap@:reads/SRP012006/SRS375428/SRX204516/SRR616900/SRR616900.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMJK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMJK_NormalVsPrimary.png	4			
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-10A-01D	DNA	EFO	SRS375428	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E06	SRX204516		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55651-FS3_L01.bam	SRR616900	@dbgap@:reads/SRP012006/SRS375428/SRX204516/SRR616900/SRR616900.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMJK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMJK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMJK_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-10A-01D	DNA	EFO	SRS375428	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E06	SRX204516		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55651-FS3_L01.bam	SRR616900	@dbgap@:reads/SRP012006/SRS375428/SRX204516/SRR616900/SRR616900.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMJK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMJK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-10A-01D	DNA	EFO	SRS375428	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E06	SRX204516		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55651-FS3_L01.bam	SRR616900	@dbgap@:reads/SRP012006/SRS375428/SRX204516/SRR616900/SRR616900.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMJK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMJK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-10A-01D	DNA	EFO	SRS375428	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E06	SRX204516		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55651-FS3_L01.bam	SRR616900	@dbgap@:reads/SRP012006/SRS375428/SRX204516/SRR616900/SRR616900.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMJK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMJK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-10A-01D	DNA	EFO	SRS375428	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E06	SRX204516		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55651-FS3_L01.bam	SRR616900	@dbgap@:reads/SRP012006/SRS375428/SRX204516/SRR616900/SRR616900.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMJK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMJK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-10A-01D	DNA	EFO	SRS375428	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E06	SRX204516		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55651-FS3_L01.bam	SRR616900	@dbgap@:reads/SRP012006/SRS375428/SRX204516/SRR616900/SRR616900.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMJK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMJK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-10A-01D	DNA	EFO	SRS375428	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E06	SRX204516		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55651-FS3_L01.bam	SRR616900	@dbgap@:reads/SRP012006/SRS375428/SRX204516/SRR616900/SRR616900.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMJK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMJK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-10A-01D	DNA	EFO	SRS375428	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E06	SRX204516		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55651-FS3_L01.bam	SRR616900	@dbgap@:reads/SRP012006/SRS375428/SRX204516/SRR616900/SRR616900.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMJK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMJK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-10A-01D	DNA	EFO	SRS375428	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E06	SRX204516		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55651-FS3_L01.bam	SRR616900	@dbgap@:reads/SRP012006/SRS375428/SRX204516/SRR616900/SRR616900.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMJK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMJK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-10A-01D	DNA	EFO	SRS375428	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E06	SRX204516		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55651-FS3_L01.bam	SRR616900	@dbgap@:reads/SRP012006/SRS375428/SRX204516/SRR616900/SRR616900.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-10A-01D	DNA	EFO	SRS375428	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E06	SRX204516		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55651-FS3_L01.bam	SRR616900	@dbgap@:reads/SRP012006/SRS375428/SRX204516/SRR616900/SRR616900.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-10A-01D	DNA	EFO	SRS375428	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E06	SRX204516		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMJK-10A-01D GS01103-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55651-FS3_L01.bam	SRR616900	@dbgap@:reads/SRP012006/SRS375428/SRX204516/SRR616900/SRR616900.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-01A-01D	DNA	EFO	SRS190145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A03	SRX149219		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44657-FS3_L01.bam	SRR500247	@dbgap@:reads/SRP012006/SRS190145/SRX149219/SRR500247/SRR500247.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMKI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMKI_NormalVsPrimary.png	4			
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-01A-01D	DNA	EFO	SRS190145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A03	SRX149219		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44657-FS3_L01.bam	SRR500247	@dbgap@:reads/SRP012006/SRS190145/SRX149219/SRR500247/SRR500247.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMKI_NormalVsPrimary.png	4			
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-01A-01D	DNA	EFO	SRS190145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A03	SRX149219		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44657-FS3_L01.bam	SRR500247	@dbgap@:reads/SRP012006/SRS190145/SRX149219/SRR500247/SRR500247.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMKI_NormalVsPrimary.png	4			
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-01A-01D	DNA	EFO	SRS190145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A03	SRX149219		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44657-FS3_L01.bam	SRR500247	@dbgap@:reads/SRP012006/SRS190145/SRX149219/SRR500247/SRR500247.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMKI_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-01A-01D	DNA	EFO	SRS190145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A03	SRX149219		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44657-FS3_L01.bam	SRR500247	@dbgap@:reads/SRP012006/SRS190145/SRX149219/SRR500247/SRR500247.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-01A-01D	DNA	EFO	SRS190145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A03	SRX149219		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44657-FS3_L01.bam	SRR500247	@dbgap@:reads/SRP012006/SRS190145/SRX149219/SRR500247/SRR500247.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-01A-01D	DNA	EFO	SRS190145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A03	SRX149219		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44657-FS3_L01.bam	SRR500247	@dbgap@:reads/SRP012006/SRS190145/SRX149219/SRR500247/SRR500247.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-01A-01D	DNA	EFO	SRS190145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A03	SRX149219		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44657-FS3_L01.bam	SRR500247	@dbgap@:reads/SRP012006/SRS190145/SRX149219/SRR500247/SRR500247.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-01A-01D	DNA	EFO	SRS190145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A03	SRX149219		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44657-FS3_L01.bam	SRR500247	@dbgap@:reads/SRP012006/SRS190145/SRX149219/SRR500247/SRR500247.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-01A-01D	DNA	EFO	SRS190145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A03	SRX149219		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44657-FS3_L01.bam	SRR500247	@dbgap@:reads/SRP012006/SRS190145/SRX149219/SRR500247/SRR500247.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-01A-01D	DNA	EFO	SRS190145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A03	SRX149219		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44657-FS3_L01.bam	SRR500247	@dbgap@:reads/SRP012006/SRS190145/SRX149219/SRR500247/SRR500247.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-01A-01D	DNA	EFO	SRS190145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A03	SRX149219		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44657-FS3_L01.bam	SRR500247	@dbgap@:reads/SRP012006/SRS190145/SRX149219/SRR500247/SRR500247.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-01A-01D	DNA	EFO	SRS190145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A03	SRX149219		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44657-FS3_L01.bam	SRR500247	@dbgap@:reads/SRP012006/SRS190145/SRX149219/SRR500247/SRR500247.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-01A-01D	DNA	EFO	SRS190145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A03	SRX149219		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44657-FS3_L01.bam	SRR500247	@dbgap@:reads/SRP012006/SRS190145/SRX149219/SRR500247/SRR500247.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-01A-01D	DNA	EFO	SRS190145	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A03	SRX149219		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-01A-01D GS00939-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44657-FS3_L01.bam	SRR500247	@dbgap@:reads/SRP012006/SRS190145/SRX149219/SRR500247/SRR500247.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-11A-01D	DNA	EFO	SRS190146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_C09	SRX149218		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44659-FS3_L01.bam	SRR500254	@dbgap@:reads/SRP012006/SRS190146/SRX149218/SRR500254/SRR500254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMKI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMKI_NormalVsPrimary.png	4			
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-11A-01D	DNA	EFO	SRS190146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_C09	SRX149218		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44659-FS3_L01.bam	SRR500254	@dbgap@:reads/SRP012006/SRS190146/SRX149218/SRR500254/SRR500254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMKI_NormalVsPrimary.png	4			
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-11A-01D	DNA	EFO	SRS190146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_C09	SRX149218		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44659-FS3_L01.bam	SRR500254	@dbgap@:reads/SRP012006/SRS190146/SRX149218/SRR500254/SRR500254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMKI_NormalVsPrimary.png	4			
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-11A-01D	DNA	EFO	SRS190146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_C09	SRX149218		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44659-FS3_L01.bam	SRR500254	@dbgap@:reads/SRP012006/SRS190146/SRX149218/SRR500254/SRR500254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMKI_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-11A-01D	DNA	EFO	SRS190146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_C09	SRX149218		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44659-FS3_L01.bam	SRR500254	@dbgap@:reads/SRP012006/SRS190146/SRX149218/SRR500254/SRR500254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-11A-01D	DNA	EFO	SRS190146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_C09	SRX149218		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44659-FS3_L01.bam	SRR500254	@dbgap@:reads/SRP012006/SRS190146/SRX149218/SRR500254/SRR500254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-11A-01D	DNA	EFO	SRS190146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_C09	SRX149218		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44659-FS3_L01.bam	SRR500254	@dbgap@:reads/SRP012006/SRS190146/SRX149218/SRR500254/SRR500254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-11A-01D	DNA	EFO	SRS190146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_C09	SRX149218		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44659-FS3_L01.bam	SRR500254	@dbgap@:reads/SRP012006/SRS190146/SRX149218/SRR500254/SRR500254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-11A-01D	DNA	EFO	SRS190146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_C09	SRX149218		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44659-FS3_L01.bam	SRR500254	@dbgap@:reads/SRP012006/SRS190146/SRX149218/SRR500254/SRR500254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-11A-01D	DNA	EFO	SRS190146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_C09	SRX149218		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44659-FS3_L01.bam	SRR500254	@dbgap@:reads/SRP012006/SRS190146/SRX149218/SRR500254/SRR500254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-11A-01D	DNA	EFO	SRS190146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_C09	SRX149218		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44659-FS3_L01.bam	SRR500254	@dbgap@:reads/SRP012006/SRS190146/SRX149218/SRR500254/SRR500254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-11A-01D	DNA	EFO	SRS190146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_C09	SRX149218		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44659-FS3_L01.bam	SRR500254	@dbgap@:reads/SRP012006/SRS190146/SRX149218/SRR500254/SRR500254.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-11A-01D	DNA	EFO	SRS190146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_C09	SRX149218		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44659-FS3_L01.bam	SRR500254	@dbgap@:reads/SRP012006/SRS190146/SRX149218/SRR500254/SRR500254.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-11A-01D	DNA	EFO	SRS190146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_C09	SRX149218		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44659-FS3_L01.bam	SRR500254	@dbgap@:reads/SRP012006/SRS190146/SRX149218/SRR500254/SRR500254.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-11A-01D	DNA	EFO	SRS190146	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_C09	SRX149218		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKI-11A-01D GS01004-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44659-FS3_L01.bam	SRR500254	@dbgap@:reads/SRP012006/SRS190146/SRX149218/SRR500254/SRR500254.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-01A-01D	DNA	EFO	SRS301274	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H07	SRX193176		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52018-FS3_L01.bam	SRR584076	@dbgap@:reads/SRP012006/SRS301274/SRX193176/SRR584076/SRR584076.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMKJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMKJ_NormalVsPrimary.png	4			
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-01A-01D	DNA	EFO	SRS301274	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H07	SRX193176		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52018-FS3_L01.bam	SRR584076	@dbgap@:reads/SRP012006/SRS301274/SRX193176/SRR584076/SRR584076.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMKJ_NormalVsPrimary.png	4			
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-01A-01D	DNA	EFO	SRS301274	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H07	SRX193176		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52018-FS3_L01.bam	SRR584076	@dbgap@:reads/SRP012006/SRS301274/SRX193176/SRR584076/SRR584076.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMKJ_NormalVsPrimary.png	4			
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-01A-01D	DNA	EFO	SRS301274	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H07	SRX193176		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52018-FS3_L01.bam	SRR584076	@dbgap@:reads/SRP012006/SRS301274/SRX193176/SRR584076/SRR584076.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMKJ_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-01A-01D	DNA	EFO	SRS301274	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H07	SRX193176		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52018-FS3_L01.bam	SRR584076	@dbgap@:reads/SRP012006/SRS301274/SRX193176/SRR584076/SRR584076.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-01A-01D	DNA	EFO	SRS301274	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H07	SRX193176		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52018-FS3_L01.bam	SRR584076	@dbgap@:reads/SRP012006/SRS301274/SRX193176/SRR584076/SRR584076.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-01A-01D	DNA	EFO	SRS301274	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H07	SRX193176		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52018-FS3_L01.bam	SRR584076	@dbgap@:reads/SRP012006/SRS301274/SRX193176/SRR584076/SRR584076.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-01A-01D	DNA	EFO	SRS301274	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H07	SRX193176		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52018-FS3_L01.bam	SRR584076	@dbgap@:reads/SRP012006/SRS301274/SRX193176/SRR584076/SRR584076.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-01A-01D	DNA	EFO	SRS301274	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H07	SRX193176		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52018-FS3_L01.bam	SRR584076	@dbgap@:reads/SRP012006/SRS301274/SRX193176/SRR584076/SRR584076.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-01A-01D	DNA	EFO	SRS301274	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H07	SRX193176		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52018-FS3_L01.bam	SRR584076	@dbgap@:reads/SRP012006/SRS301274/SRX193176/SRR584076/SRR584076.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-01A-01D	DNA	EFO	SRS301274	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H07	SRX193176		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52018-FS3_L01.bam	SRR584076	@dbgap@:reads/SRP012006/SRS301274/SRX193176/SRR584076/SRR584076.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-01A-01D	DNA	EFO	SRS301274	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H07	SRX193176		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52018-FS3_L01.bam	SRR584076	@dbgap@:reads/SRP012006/SRS301274/SRX193176/SRR584076/SRR584076.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-01A-01D	DNA	EFO	SRS301274	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H07	SRX193176		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52018-FS3_L01.bam	SRR584076	@dbgap@:reads/SRP012006/SRS301274/SRX193176/SRR584076/SRR584076.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-01A-01D	DNA	EFO	SRS301274	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H07	SRX193176		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52018-FS3_L01.bam	SRR584076	@dbgap@:reads/SRP012006/SRS301274/SRX193176/SRR584076/SRR584076.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-01A-01D	DNA	EFO	SRS301274	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H07	SRX193176		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-01A-01D GS01073-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52018-FS3_L01.bam	SRR584076	@dbgap@:reads/SRP012006/SRS301274/SRX193176/SRR584076/SRR584076.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-11A-01D	DNA	EFO	SRS365372	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F10	SRX193175		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52019-FS3_L01.bam	SRR584084	@dbgap@:reads/SRP012006/SRS365372/SRX193175/SRR584084/SRR584084.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMKJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMKJ_NormalVsPrimary.png	4			
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-11A-01D	DNA	EFO	SRS365372	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F10	SRX193175		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52019-FS3_L01.bam	SRR584084	@dbgap@:reads/SRP012006/SRS365372/SRX193175/SRR584084/SRR584084.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMKJ_NormalVsPrimary.png	4			
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-11A-01D	DNA	EFO	SRS365372	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F10	SRX193175		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52019-FS3_L01.bam	SRR584084	@dbgap@:reads/SRP012006/SRS365372/SRX193175/SRR584084/SRR584084.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMKJ_NormalVsPrimary.png	4			
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-11A-01D	DNA	EFO	SRS365372	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F10	SRX193175		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52019-FS3_L01.bam	SRR584084	@dbgap@:reads/SRP012006/SRS365372/SRX193175/SRR584084/SRR584084.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMKJ_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-11A-01D	DNA	EFO	SRS365372	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F10	SRX193175		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52019-FS3_L01.bam	SRR584084	@dbgap@:reads/SRP012006/SRS365372/SRX193175/SRR584084/SRR584084.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-11A-01D	DNA	EFO	SRS365372	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F10	SRX193175		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52019-FS3_L01.bam	SRR584084	@dbgap@:reads/SRP012006/SRS365372/SRX193175/SRR584084/SRR584084.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-11A-01D	DNA	EFO	SRS365372	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F10	SRX193175		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52019-FS3_L01.bam	SRR584084	@dbgap@:reads/SRP012006/SRS365372/SRX193175/SRR584084/SRR584084.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-11A-01D	DNA	EFO	SRS365372	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F10	SRX193175		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52019-FS3_L01.bam	SRR584084	@dbgap@:reads/SRP012006/SRS365372/SRX193175/SRR584084/SRR584084.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-11A-01D	DNA	EFO	SRS365372	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F10	SRX193175		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52019-FS3_L01.bam	SRR584084	@dbgap@:reads/SRP012006/SRS365372/SRX193175/SRR584084/SRR584084.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-11A-01D	DNA	EFO	SRS365372	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F10	SRX193175		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52019-FS3_L01.bam	SRR584084	@dbgap@:reads/SRP012006/SRS365372/SRX193175/SRR584084/SRR584084.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-11A-01D	DNA	EFO	SRS365372	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F10	SRX193175		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52019-FS3_L01.bam	SRR584084	@dbgap@:reads/SRP012006/SRS365372/SRX193175/SRR584084/SRR584084.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-11A-01D	DNA	EFO	SRS365372	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F10	SRX193175		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52019-FS3_L01.bam	SRR584084	@dbgap@:reads/SRP012006/SRS365372/SRX193175/SRR584084/SRR584084.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-11A-01D	DNA	EFO	SRS365372	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F10	SRX193175		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52019-FS3_L01.bam	SRR584084	@dbgap@:reads/SRP012006/SRS365372/SRX193175/SRR584084/SRR584084.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-11A-01D	DNA	EFO	SRS365372	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F10	SRX193175		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52019-FS3_L01.bam	SRR584084	@dbgap@:reads/SRP012006/SRS365372/SRX193175/SRR584084/SRR584084.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-11A-01D	DNA	EFO	SRS365372	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F10	SRX193175		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMKJ-11A-01D GS01073-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52019-FS3_L01.bam	SRR584084	@dbgap@:reads/SRP012006/SRS365372/SRX193175/SRR584084/SRR584084.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-01A-01D	DNA	EFO	SRS190147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B03	SRX149596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L01.bam	SRR500796	@dbgap@:reads/SRP012006/SRS190147/SRX149596/SRR500796/SRR500796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMLI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMLI_NormalVsPrimary.png	4			
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-01A-01D	DNA	EFO	SRS190147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B03	SRX149596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L01.bam	SRR500796	@dbgap@:reads/SRP012006/SRS190147/SRX149596/SRR500796/SRR500796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMLI_NormalVsPrimary.png	4			
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-01A-01D	DNA	EFO	SRS190147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B03	SRX149596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L01.bam	SRR500796	@dbgap@:reads/SRP012006/SRS190147/SRX149596/SRR500796/SRR500796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMLI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMLI_NormalVsPrimary.png	4			
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-01A-01D	DNA	EFO	SRS190147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B03	SRX149596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L01.bam	SRR500796	@dbgap@:reads/SRP012006/SRS190147/SRX149596/SRR500796/SRR500796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMLI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMLI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMLI_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-01A-01D	DNA	EFO	SRS190147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B03	SRX149596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L01.bam	SRR500796	@dbgap@:reads/SRP012006/SRS190147/SRX149596/SRR500796/SRR500796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMLI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMLI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-01A-01D	DNA	EFO	SRS190147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B03	SRX149596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L01.bam	SRR500796	@dbgap@:reads/SRP012006/SRS190147/SRX149596/SRR500796/SRR500796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMLI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMLI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-01A-01D	DNA	EFO	SRS190147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B03	SRX149596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L01.bam	SRR500796	@dbgap@:reads/SRP012006/SRS190147/SRX149596/SRR500796/SRR500796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMLI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMLI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-01A-01D	DNA	EFO	SRS190147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B03	SRX149596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L01.bam	SRR500796	@dbgap@:reads/SRP012006/SRS190147/SRX149596/SRR500796/SRR500796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMLI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMLI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-01A-01D	DNA	EFO	SRS190147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B03	SRX149596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L01.bam	SRR500796	@dbgap@:reads/SRP012006/SRS190147/SRX149596/SRR500796/SRR500796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMLI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMLI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-01A-01D	DNA	EFO	SRS190147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B03	SRX149596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L01.bam	SRR500796	@dbgap@:reads/SRP012006/SRS190147/SRX149596/SRR500796/SRR500796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMLI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMLI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-01A-01D	DNA	EFO	SRS190147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B03	SRX149596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L01.bam	SRR500796	@dbgap@:reads/SRP012006/SRS190147/SRX149596/SRR500796/SRR500796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMLI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMLI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-01A-01D	DNA	EFO	SRS190147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B03	SRX149596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L01.bam	SRR500796	@dbgap@:reads/SRP012006/SRS190147/SRX149596/SRR500796/SRR500796.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMLI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMLI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-01A-01D	DNA	EFO	SRS190147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B03	SRX149596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L01.bam	SRR500796	@dbgap@:reads/SRP012006/SRS190147/SRX149596/SRR500796/SRR500796.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-01A-01D	DNA	EFO	SRS190147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B03	SRX149596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L01.bam	SRR500796	@dbgap@:reads/SRP012006/SRS190147/SRX149596/SRR500796/SRR500796.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-01A-01D	DNA	EFO	SRS190147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B03	SRX149596		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-01A-01D GS00939-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L01.bam	SRR500796	@dbgap@:reads/SRP012006/SRS190147/SRX149596/SRR500796/SRR500796.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-11A-01D	DNA	EFO	SRS190148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_E09	SRX149595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L03.bam	SRR500804	@dbgap@:reads/SRP012006/SRS190148/SRX149595/SRR500804/SRR500804.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMLI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMLI_NormalVsPrimary.png	4			
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-11A-01D	DNA	EFO	SRS190148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_E09	SRX149595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L03.bam	SRR500804	@dbgap@:reads/SRP012006/SRS190148/SRX149595/SRR500804/SRR500804.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMLI_NormalVsPrimary.png	4			
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-11A-01D	DNA	EFO	SRS190148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_E09	SRX149595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L03.bam	SRR500804	@dbgap@:reads/SRP012006/SRS190148/SRX149595/SRR500804/SRR500804.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMLI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMLI_NormalVsPrimary.png	4			
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-11A-01D	DNA	EFO	SRS190148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_E09	SRX149595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L03.bam	SRR500804	@dbgap@:reads/SRP012006/SRS190148/SRX149595/SRR500804/SRR500804.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMLI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMLI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMLI_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-11A-01D	DNA	EFO	SRS190148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_E09	SRX149595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L03.bam	SRR500804	@dbgap@:reads/SRP012006/SRS190148/SRX149595/SRR500804/SRR500804.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMLI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMLI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-11A-01D	DNA	EFO	SRS190148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_E09	SRX149595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L03.bam	SRR500804	@dbgap@:reads/SRP012006/SRS190148/SRX149595/SRR500804/SRR500804.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMLI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMLI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-11A-01D	DNA	EFO	SRS190148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_E09	SRX149595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L03.bam	SRR500804	@dbgap@:reads/SRP012006/SRS190148/SRX149595/SRR500804/SRR500804.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMLI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMLI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-11A-01D	DNA	EFO	SRS190148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_E09	SRX149595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L03.bam	SRR500804	@dbgap@:reads/SRP012006/SRS190148/SRX149595/SRR500804/SRR500804.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMLI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMLI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-11A-01D	DNA	EFO	SRS190148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_E09	SRX149595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L03.bam	SRR500804	@dbgap@:reads/SRP012006/SRS190148/SRX149595/SRR500804/SRR500804.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMLI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMLI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-11A-01D	DNA	EFO	SRS190148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_E09	SRX149595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L03.bam	SRR500804	@dbgap@:reads/SRP012006/SRS190148/SRX149595/SRR500804/SRR500804.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMLI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMLI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-11A-01D	DNA	EFO	SRS190148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_E09	SRX149595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L03.bam	SRR500804	@dbgap@:reads/SRP012006/SRS190148/SRX149595/SRR500804/SRR500804.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMLI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMLI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-11A-01D	DNA	EFO	SRS190148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_E09	SRX149595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L03.bam	SRR500804	@dbgap@:reads/SRP012006/SRS190148/SRX149595/SRR500804/SRR500804.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMLI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMLI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-11A-01D	DNA	EFO	SRS190148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_E09	SRX149595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L03.bam	SRR500804	@dbgap@:reads/SRP012006/SRS190148/SRX149595/SRR500804/SRR500804.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-11A-01D	DNA	EFO	SRS190148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_E09	SRX149595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L03.bam	SRR500804	@dbgap@:reads/SRP012006/SRS190148/SRX149595/SRR500804/SRR500804.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-11A-01D	DNA	EFO	SRS190148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_E09	SRX149595		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMLI-11A-01D GS01004-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44655-FS3_L03.bam	SRR500804	@dbgap@:reads/SRP012006/SRS190148/SRX149595/SRR500804/SRR500804.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-01A-01D	DNA	EFO	SRS301276	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A08	SRX362998		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52235-FS3_L01.bam	SRR1007302	@dbgap@:reads/SRP012006/SRS301276/SRX362998/SRR1007302/SRR1007302.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMMY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMMY_NormalVsPrimary.png	4			
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-01A-01D	DNA	EFO	SRS301276	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A08	SRX362998		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52235-FS3_L01.bam	SRR1007302	@dbgap@:reads/SRP012006/SRS301276/SRX362998/SRR1007302/SRR1007302.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMMY_NormalVsPrimary.png	4			
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-01A-01D	DNA	EFO	SRS301276	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A08	SRX362998		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52235-FS3_L01.bam	SRR1007302	@dbgap@:reads/SRP012006/SRS301276/SRX362998/SRR1007302/SRR1007302.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMMY_NormalVsPrimary.png	4			
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-01A-01D	DNA	EFO	SRS301276	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A08	SRX362998		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52235-FS3_L01.bam	SRR1007302	@dbgap@:reads/SRP012006/SRS301276/SRX362998/SRR1007302/SRR1007302.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMMY_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-01A-01D	DNA	EFO	SRS301276	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A08	SRX362998		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52235-FS3_L01.bam	SRR1007302	@dbgap@:reads/SRP012006/SRS301276/SRX362998/SRR1007302/SRR1007302.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-01A-01D	DNA	EFO	SRS301276	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A08	SRX362998		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52235-FS3_L01.bam	SRR1007302	@dbgap@:reads/SRP012006/SRS301276/SRX362998/SRR1007302/SRR1007302.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-01A-01D	DNA	EFO	SRS301276	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A08	SRX362998		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52235-FS3_L01.bam	SRR1007302	@dbgap@:reads/SRP012006/SRS301276/SRX362998/SRR1007302/SRR1007302.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-01A-01D	DNA	EFO	SRS301276	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A08	SRX362998		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52235-FS3_L01.bam	SRR1007302	@dbgap@:reads/SRP012006/SRS301276/SRX362998/SRR1007302/SRR1007302.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-01A-01D	DNA	EFO	SRS301276	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A08	SRX362998		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52235-FS3_L01.bam	SRR1007302	@dbgap@:reads/SRP012006/SRS301276/SRX362998/SRR1007302/SRR1007302.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-01A-01D	DNA	EFO	SRS301276	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A08	SRX362998		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52235-FS3_L01.bam	SRR1007302	@dbgap@:reads/SRP012006/SRS301276/SRX362998/SRR1007302/SRR1007302.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-01A-01D	DNA	EFO	SRS301276	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A08	SRX362998		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52235-FS3_L01.bam	SRR1007302	@dbgap@:reads/SRP012006/SRS301276/SRX362998/SRR1007302/SRR1007302.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-01A-01D	DNA	EFO	SRS301276	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A08	SRX362998		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52235-FS3_L01.bam	SRR1007302	@dbgap@:reads/SRP012006/SRS301276/SRX362998/SRR1007302/SRR1007302.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-01A-01D	DNA	EFO	SRS301276	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A08	SRX362998		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52235-FS3_L01.bam	SRR1007302	@dbgap@:reads/SRP012006/SRS301276/SRX362998/SRR1007302/SRR1007302.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-01A-01D	DNA	EFO	SRS301276	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A08	SRX362998		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52235-FS3_L01.bam	SRR1007302	@dbgap@:reads/SRP012006/SRS301276/SRX362998/SRR1007302/SRR1007302.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-01A-01D	DNA	EFO	SRS301276	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A08	SRX362998		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-01A-01D GS01073-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52235-FS3_L01.bam	SRR1007302	@dbgap@:reads/SRP012006/SRS301276/SRX362998/SRR1007302/SRR1007302.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-11A-01D	DNA	EFO	SRS365564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G10	SRX362997	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52234-FS3_L01.bam	SRR1007310	@dbgap@:reads/SRP012006/SRS365564/SRX362997/SRR1007310/SRR1007310.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMMY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMMY_NormalVsPrimary.png	4			
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-11A-01D	DNA	EFO	SRS365564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G10	SRX362997	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52234-FS3_L01.bam	SRR1007310	@dbgap@:reads/SRP012006/SRS365564/SRX362997/SRR1007310/SRR1007310.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMMY_NormalVsPrimary.png	4			
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-11A-01D	DNA	EFO	SRS365564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G10	SRX362997	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52234-FS3_L01.bam	SRR1007310	@dbgap@:reads/SRP012006/SRS365564/SRX362997/SRR1007310/SRR1007310.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMMY_NormalVsPrimary.png	4			
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-11A-01D	DNA	EFO	SRS365564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G10	SRX362997	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52234-FS3_L01.bam	SRR1007310	@dbgap@:reads/SRP012006/SRS365564/SRX362997/SRR1007310/SRR1007310.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMMY_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-11A-01D	DNA	EFO	SRS365564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G10	SRX362997	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52234-FS3_L01.bam	SRR1007310	@dbgap@:reads/SRP012006/SRS365564/SRX362997/SRR1007310/SRR1007310.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-11A-01D	DNA	EFO	SRS365564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G10	SRX362997	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52234-FS3_L01.bam	SRR1007310	@dbgap@:reads/SRP012006/SRS365564/SRX362997/SRR1007310/SRR1007310.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-11A-01D	DNA	EFO	SRS365564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G10	SRX362997	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52234-FS3_L01.bam	SRR1007310	@dbgap@:reads/SRP012006/SRS365564/SRX362997/SRR1007310/SRR1007310.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-11A-01D	DNA	EFO	SRS365564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G10	SRX362997	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52234-FS3_L01.bam	SRR1007310	@dbgap@:reads/SRP012006/SRS365564/SRX362997/SRR1007310/SRR1007310.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-11A-01D	DNA	EFO	SRS365564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G10	SRX362997	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52234-FS3_L01.bam	SRR1007310	@dbgap@:reads/SRP012006/SRS365564/SRX362997/SRR1007310/SRR1007310.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-11A-01D	DNA	EFO	SRS365564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G10	SRX362997	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52234-FS3_L01.bam	SRR1007310	@dbgap@:reads/SRP012006/SRS365564/SRX362997/SRR1007310/SRR1007310.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-11A-01D	DNA	EFO	SRS365564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G10	SRX362997	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52234-FS3_L01.bam	SRR1007310	@dbgap@:reads/SRP012006/SRS365564/SRX362997/SRR1007310/SRR1007310.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-11A-01D	DNA	EFO	SRS365564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G10	SRX362997	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52234-FS3_L01.bam	SRR1007310	@dbgap@:reads/SRP012006/SRS365564/SRX362997/SRR1007310/SRR1007310.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-11A-01D	DNA	EFO	SRS365564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G10	SRX362997	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52234-FS3_L01.bam	SRR1007310	@dbgap@:reads/SRP012006/SRS365564/SRX362997/SRR1007310/SRR1007310.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-11A-01D	DNA	EFO	SRS365564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G10	SRX362997	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52234-FS3_L01.bam	SRR1007310	@dbgap@:reads/SRP012006/SRS365564/SRX362997/SRR1007310/SRR1007310.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-11A-01D	DNA	EFO	SRS365564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G10	SRX362997	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMMY-11A-01D GS01073-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52234-FS3_L01.bam	SRR1007310	@dbgap@:reads/SRP012006/SRS365564/SRX362997/SRR1007310/SRR1007310.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-01A-01D	DNA	EFO	SRS118133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C10	SRX130204		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18185-FS3_L01.bam	SRR446199	@dbgap@:reads/SRP012006/SRS118133/SRX130204/SRR446199/SRR446199.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMRL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMRL_NormalVsPrimary.png	4			
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-01A-01D	DNA	EFO	SRS118133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C10	SRX130204		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18185-FS3_L01.bam	SRR446199	@dbgap@:reads/SRP012006/SRS118133/SRX130204/SRR446199/SRR446199.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMRL_NormalVsPrimary.png	4			
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-01A-01D	DNA	EFO	SRS118133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C10	SRX130204		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18185-FS3_L01.bam	SRR446199	@dbgap@:reads/SRP012006/SRS118133/SRX130204/SRR446199/SRR446199.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMRL_NormalVsPrimary.png	4			
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-01A-01D	DNA	EFO	SRS118133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C10	SRX130204		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18185-FS3_L01.bam	SRR446199	@dbgap@:reads/SRP012006/SRS118133/SRX130204/SRR446199/SRR446199.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMRL_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-01A-01D	DNA	EFO	SRS118133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C10	SRX130204		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18185-FS3_L01.bam	SRR446199	@dbgap@:reads/SRP012006/SRS118133/SRX130204/SRR446199/SRR446199.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-01A-01D	DNA	EFO	SRS118133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C10	SRX130204		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18185-FS3_L01.bam	SRR446199	@dbgap@:reads/SRP012006/SRS118133/SRX130204/SRR446199/SRR446199.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-01A-01D	DNA	EFO	SRS118133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C10	SRX130204		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18185-FS3_L01.bam	SRR446199	@dbgap@:reads/SRP012006/SRS118133/SRX130204/SRR446199/SRR446199.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-01A-01D	DNA	EFO	SRS118133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C10	SRX130204		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18185-FS3_L01.bam	SRR446199	@dbgap@:reads/SRP012006/SRS118133/SRX130204/SRR446199/SRR446199.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-01A-01D	DNA	EFO	SRS118133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C10	SRX130204		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18185-FS3_L01.bam	SRR446199	@dbgap@:reads/SRP012006/SRS118133/SRX130204/SRR446199/SRR446199.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-01A-01D	DNA	EFO	SRS118133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C10	SRX130204		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18185-FS3_L01.bam	SRR446199	@dbgap@:reads/SRP012006/SRS118133/SRX130204/SRR446199/SRR446199.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-01A-01D	DNA	EFO	SRS118133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C10	SRX130204		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18185-FS3_L01.bam	SRR446199	@dbgap@:reads/SRP012006/SRS118133/SRX130204/SRR446199/SRR446199.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-01A-01D	DNA	EFO	SRS118133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C10	SRX130204		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18185-FS3_L01.bam	SRR446199	@dbgap@:reads/SRP012006/SRS118133/SRX130204/SRR446199/SRR446199.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-01A-01D	DNA	EFO	SRS118133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C10	SRX130204		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18185-FS3_L01.bam	SRR446199	@dbgap@:reads/SRP012006/SRS118133/SRX130204/SRR446199/SRR446199.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-01A-01D	DNA	EFO	SRS118133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C10	SRX130204		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18185-FS3_L01.bam	SRR446199	@dbgap@:reads/SRP012006/SRS118133/SRX130204/SRR446199/SRR446199.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-01A-01D	DNA	EFO	SRS118133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C10	SRX130204		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-01A-01D GS00663-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18185-FS3_L01.bam	SRR446199	@dbgap@:reads/SRP012006/SRS118133/SRX130204/SRR446199/SRR446199.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-10A-01D	DNA	EFO	SRS118134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_B12	SRX130203		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19120-FS3_L01.bam	SRR446207	@dbgap@:reads/SRP012006/SRS118134/SRX130203/SRR446207/SRR446207.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMRL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMRL_NormalVsPrimary.png	4			
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-10A-01D	DNA	EFO	SRS118134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_B12	SRX130203		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19120-FS3_L01.bam	SRR446207	@dbgap@:reads/SRP012006/SRS118134/SRX130203/SRR446207/SRR446207.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMRL_NormalVsPrimary.png	4			
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-10A-01D	DNA	EFO	SRS118134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_B12	SRX130203		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19120-FS3_L01.bam	SRR446207	@dbgap@:reads/SRP012006/SRS118134/SRX130203/SRR446207/SRR446207.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMRL_NormalVsPrimary.png	4			
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-10A-01D	DNA	EFO	SRS118134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_B12	SRX130203		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19120-FS3_L01.bam	SRR446207	@dbgap@:reads/SRP012006/SRS118134/SRX130203/SRR446207/SRR446207.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMRL_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-10A-01D	DNA	EFO	SRS118134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_B12	SRX130203		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19120-FS3_L01.bam	SRR446207	@dbgap@:reads/SRP012006/SRS118134/SRX130203/SRR446207/SRR446207.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-10A-01D	DNA	EFO	SRS118134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_B12	SRX130203		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19120-FS3_L01.bam	SRR446207	@dbgap@:reads/SRP012006/SRS118134/SRX130203/SRR446207/SRR446207.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-10A-01D	DNA	EFO	SRS118134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_B12	SRX130203		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19120-FS3_L01.bam	SRR446207	@dbgap@:reads/SRP012006/SRS118134/SRX130203/SRR446207/SRR446207.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-10A-01D	DNA	EFO	SRS118134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_B12	SRX130203		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19120-FS3_L01.bam	SRR446207	@dbgap@:reads/SRP012006/SRS118134/SRX130203/SRR446207/SRR446207.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-10A-01D	DNA	EFO	SRS118134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_B12	SRX130203		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19120-FS3_L01.bam	SRR446207	@dbgap@:reads/SRP012006/SRS118134/SRX130203/SRR446207/SRR446207.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-10A-01D	DNA	EFO	SRS118134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_B12	SRX130203		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19120-FS3_L01.bam	SRR446207	@dbgap@:reads/SRP012006/SRS118134/SRX130203/SRR446207/SRR446207.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-10A-01D	DNA	EFO	SRS118134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_B12	SRX130203		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19120-FS3_L01.bam	SRR446207	@dbgap@:reads/SRP012006/SRS118134/SRX130203/SRR446207/SRR446207.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-10A-01D	DNA	EFO	SRS118134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_B12	SRX130203		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19120-FS3_L01.bam	SRR446207	@dbgap@:reads/SRP012006/SRS118134/SRX130203/SRR446207/SRR446207.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-10A-01D	DNA	EFO	SRS118134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_B12	SRX130203		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19120-FS3_L01.bam	SRR446207	@dbgap@:reads/SRP012006/SRS118134/SRX130203/SRR446207/SRR446207.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-10A-01D	DNA	EFO	SRS118134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_B12	SRX130203		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19120-FS3_L01.bam	SRR446207	@dbgap@:reads/SRP012006/SRS118134/SRX130203/SRR446207/SRR446207.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-10A-01D	DNA	EFO	SRS118134	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_B12	SRX130203		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMRL-10A-01D GS00663-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19120-FS3_L01.bam	SRR446207	@dbgap@:reads/SRP012006/SRS118134/SRX130203/SRR446207/SRR446207.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-01A-01D	DNA	EFO	SRS190149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_E02	SRX170601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48951-FS3_L01.bam	SRR526600	@dbgap@:reads/SRP012006/SRS190149/SRX170601/SRR526600/SRR526600.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMUF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMUF_NormalVsPrimary.png	4			
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-01A-01D	DNA	EFO	SRS190149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_E02	SRX170601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48951-FS3_L01.bam	SRR526600	@dbgap@:reads/SRP012006/SRS190149/SRX170601/SRR526600/SRR526600.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMUF_NormalVsPrimary.png	4			
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-01A-01D	DNA	EFO	SRS190149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_E02	SRX170601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48951-FS3_L01.bam	SRR526600	@dbgap@:reads/SRP012006/SRS190149/SRX170601/SRR526600/SRR526600.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMUF_NormalVsPrimary.png	4			
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-01A-01D	DNA	EFO	SRS190149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_E02	SRX170601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48951-FS3_L01.bam	SRR526600	@dbgap@:reads/SRP012006/SRS190149/SRX170601/SRR526600/SRR526600.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMUF_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-01A-01D	DNA	EFO	SRS190149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_E02	SRX170601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48951-FS3_L01.bam	SRR526600	@dbgap@:reads/SRP012006/SRS190149/SRX170601/SRR526600/SRR526600.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-01A-01D	DNA	EFO	SRS190149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_E02	SRX170601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48951-FS3_L01.bam	SRR526600	@dbgap@:reads/SRP012006/SRS190149/SRX170601/SRR526600/SRR526600.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-01A-01D	DNA	EFO	SRS190149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_E02	SRX170601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48951-FS3_L01.bam	SRR526600	@dbgap@:reads/SRP012006/SRS190149/SRX170601/SRR526600/SRR526600.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-01A-01D	DNA	EFO	SRS190149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_E02	SRX170601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48951-FS3_L01.bam	SRR526600	@dbgap@:reads/SRP012006/SRS190149/SRX170601/SRR526600/SRR526600.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-01A-01D	DNA	EFO	SRS190149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_E02	SRX170601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48951-FS3_L01.bam	SRR526600	@dbgap@:reads/SRP012006/SRS190149/SRX170601/SRR526600/SRR526600.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-01A-01D	DNA	EFO	SRS190149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_E02	SRX170601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48951-FS3_L01.bam	SRR526600	@dbgap@:reads/SRP012006/SRS190149/SRX170601/SRR526600/SRR526600.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-01A-01D	DNA	EFO	SRS190149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_E02	SRX170601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48951-FS3_L01.bam	SRR526600	@dbgap@:reads/SRP012006/SRS190149/SRX170601/SRR526600/SRR526600.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-01A-01D	DNA	EFO	SRS190149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_E02	SRX170601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48951-FS3_L01.bam	SRR526600	@dbgap@:reads/SRP012006/SRS190149/SRX170601/SRR526600/SRR526600.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-01A-01D	DNA	EFO	SRS190149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_E02	SRX170601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48951-FS3_L01.bam	SRR526600	@dbgap@:reads/SRP012006/SRS190149/SRX170601/SRR526600/SRR526600.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-01A-01D	DNA	EFO	SRS190149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_E02	SRX170601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48951-FS3_L01.bam	SRR526600	@dbgap@:reads/SRP012006/SRS190149/SRX170601/SRR526600/SRR526600.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-01A-01D	DNA	EFO	SRS190149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_E02	SRX170601		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-01A-01D GS01042-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48951-FS3_L01.bam	SRR526600	@dbgap@:reads/SRP012006/SRS190149/SRX170601/SRR526600/SRR526600.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-10A-01D	DNA	EFO	SRS190150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_H12	SRX170600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48950-FS3_L01.bam	SRR526607	@dbgap@:reads/SRP012006/SRS190150/SRX170600/SRR526607/SRR526607.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMUF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMUF_NormalVsPrimary.png	4			
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-10A-01D	DNA	EFO	SRS190150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_H12	SRX170600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48950-FS3_L01.bam	SRR526607	@dbgap@:reads/SRP012006/SRS190150/SRX170600/SRR526607/SRR526607.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMUF_NormalVsPrimary.png	4			
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-10A-01D	DNA	EFO	SRS190150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_H12	SRX170600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48950-FS3_L01.bam	SRR526607	@dbgap@:reads/SRP012006/SRS190150/SRX170600/SRR526607/SRR526607.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMUF_NormalVsPrimary.png	4			
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-10A-01D	DNA	EFO	SRS190150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_H12	SRX170600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48950-FS3_L01.bam	SRR526607	@dbgap@:reads/SRP012006/SRS190150/SRX170600/SRR526607/SRR526607.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMUF_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-10A-01D	DNA	EFO	SRS190150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_H12	SRX170600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48950-FS3_L01.bam	SRR526607	@dbgap@:reads/SRP012006/SRS190150/SRX170600/SRR526607/SRR526607.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-10A-01D	DNA	EFO	SRS190150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_H12	SRX170600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48950-FS3_L01.bam	SRR526607	@dbgap@:reads/SRP012006/SRS190150/SRX170600/SRR526607/SRR526607.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-10A-01D	DNA	EFO	SRS190150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_H12	SRX170600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48950-FS3_L01.bam	SRR526607	@dbgap@:reads/SRP012006/SRS190150/SRX170600/SRR526607/SRR526607.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-10A-01D	DNA	EFO	SRS190150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_H12	SRX170600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48950-FS3_L01.bam	SRR526607	@dbgap@:reads/SRP012006/SRS190150/SRX170600/SRR526607/SRR526607.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-10A-01D	DNA	EFO	SRS190150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_H12	SRX170600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48950-FS3_L01.bam	SRR526607	@dbgap@:reads/SRP012006/SRS190150/SRX170600/SRR526607/SRR526607.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-10A-01D	DNA	EFO	SRS190150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_H12	SRX170600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48950-FS3_L01.bam	SRR526607	@dbgap@:reads/SRP012006/SRS190150/SRX170600/SRR526607/SRR526607.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-10A-01D	DNA	EFO	SRS190150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_H12	SRX170600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48950-FS3_L01.bam	SRR526607	@dbgap@:reads/SRP012006/SRS190150/SRX170600/SRR526607/SRR526607.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-10A-01D	DNA	EFO	SRS190150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_H12	SRX170600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48950-FS3_L01.bam	SRR526607	@dbgap@:reads/SRP012006/SRS190150/SRX170600/SRR526607/SRR526607.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-10A-01D	DNA	EFO	SRS190150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_H12	SRX170600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48950-FS3_L01.bam	SRR526607	@dbgap@:reads/SRP012006/SRS190150/SRX170600/SRR526607/SRR526607.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-10A-01D	DNA	EFO	SRS190150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_H12	SRX170600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48950-FS3_L01.bam	SRR526607	@dbgap@:reads/SRP012006/SRS190150/SRX170600/SRR526607/SRR526607.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-10A-01D	DNA	EFO	SRS190150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01042-CLS_H12	SRX170600		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMUF-10A-01D GS01042-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48950-FS3_L01.bam	SRR526607	@dbgap@:reads/SRP012006/SRS190150/SRX170600/SRR526607/SRR526607.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-01A-01D	DNA	EFO	SRS375193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B04	SRX204282		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55352-FS3_L01.bam	SRR616535	@dbgap@:reads/SRP012006/SRS375193/SRX204282/SRR616535/SRR616535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMVU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMVU_NormalVsPrimary.png	4			
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-01A-01D	DNA	EFO	SRS375193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B04	SRX204282		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55352-FS3_L01.bam	SRR616535	@dbgap@:reads/SRP012006/SRS375193/SRX204282/SRR616535/SRR616535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMVU_NormalVsPrimary.png	4			
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-01A-01D	DNA	EFO	SRS375193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B04	SRX204282		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55352-FS3_L01.bam	SRR616535	@dbgap@:reads/SRP012006/SRS375193/SRX204282/SRR616535/SRR616535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMVU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMVU_NormalVsPrimary.png	4			
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-01A-01D	DNA	EFO	SRS375193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B04	SRX204282		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55352-FS3_L01.bam	SRR616535	@dbgap@:reads/SRP012006/SRS375193/SRX204282/SRR616535/SRR616535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMVU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMVU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMVU_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-01A-01D	DNA	EFO	SRS375193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B04	SRX204282		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55352-FS3_L01.bam	SRR616535	@dbgap@:reads/SRP012006/SRS375193/SRX204282/SRR616535/SRR616535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMVU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMVU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-01A-01D	DNA	EFO	SRS375193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B04	SRX204282		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55352-FS3_L01.bam	SRR616535	@dbgap@:reads/SRP012006/SRS375193/SRX204282/SRR616535/SRR616535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMVU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMVU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-01A-01D	DNA	EFO	SRS375193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B04	SRX204282		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55352-FS3_L01.bam	SRR616535	@dbgap@:reads/SRP012006/SRS375193/SRX204282/SRR616535/SRR616535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMVU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMVU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-01A-01D	DNA	EFO	SRS375193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B04	SRX204282		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55352-FS3_L01.bam	SRR616535	@dbgap@:reads/SRP012006/SRS375193/SRX204282/SRR616535/SRR616535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMVU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMVU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-01A-01D	DNA	EFO	SRS375193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B04	SRX204282		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55352-FS3_L01.bam	SRR616535	@dbgap@:reads/SRP012006/SRS375193/SRX204282/SRR616535/SRR616535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMVU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMVU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-01A-01D	DNA	EFO	SRS375193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B04	SRX204282		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55352-FS3_L01.bam	SRR616535	@dbgap@:reads/SRP012006/SRS375193/SRX204282/SRR616535/SRR616535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMVU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMVU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-01A-01D	DNA	EFO	SRS375193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B04	SRX204282		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55352-FS3_L01.bam	SRR616535	@dbgap@:reads/SRP012006/SRS375193/SRX204282/SRR616535/SRR616535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMVU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMVU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-01A-01D	DNA	EFO	SRS375193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B04	SRX204282		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55352-FS3_L01.bam	SRR616535	@dbgap@:reads/SRP012006/SRS375193/SRX204282/SRR616535/SRR616535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMVU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMVU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-01A-01D	DNA	EFO	SRS375193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B04	SRX204282		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55352-FS3_L01.bam	SRR616535	@dbgap@:reads/SRP012006/SRS375193/SRX204282/SRR616535/SRR616535.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-01A-01D	DNA	EFO	SRS375193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B04	SRX204282		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55352-FS3_L01.bam	SRR616535	@dbgap@:reads/SRP012006/SRS375193/SRX204282/SRR616535/SRR616535.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-01A-01D	DNA	EFO	SRS375193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B04	SRX204282		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-01A-01D GS01103-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55352-FS3_L01.bam	SRR616535	@dbgap@:reads/SRP012006/SRS375193/SRX204282/SRR616535/SRR616535.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-10A-01D	DNA	EFO	SRS375194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C04	SRX204281		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54819-FS3_L01.bam	SRR616542	@dbgap@:reads/SRP012006/SRS375194/SRX204281/SRR616542/SRR616542.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMVU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMVU_NormalVsPrimary.png	4			
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-10A-01D	DNA	EFO	SRS375194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C04	SRX204281		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54819-FS3_L01.bam	SRR616542	@dbgap@:reads/SRP012006/SRS375194/SRX204281/SRR616542/SRR616542.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMVU_NormalVsPrimary.png	4			
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-10A-01D	DNA	EFO	SRS375194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C04	SRX204281		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54819-FS3_L01.bam	SRR616542	@dbgap@:reads/SRP012006/SRS375194/SRX204281/SRR616542/SRR616542.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMVU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMVU_NormalVsPrimary.png	4			
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-10A-01D	DNA	EFO	SRS375194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C04	SRX204281		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54819-FS3_L01.bam	SRR616542	@dbgap@:reads/SRP012006/SRS375194/SRX204281/SRR616542/SRR616542.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMVU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMVU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMVU_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-10A-01D	DNA	EFO	SRS375194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C04	SRX204281		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54819-FS3_L01.bam	SRR616542	@dbgap@:reads/SRP012006/SRS375194/SRX204281/SRR616542/SRR616542.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMVU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMVU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-10A-01D	DNA	EFO	SRS375194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C04	SRX204281		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54819-FS3_L01.bam	SRR616542	@dbgap@:reads/SRP012006/SRS375194/SRX204281/SRR616542/SRR616542.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMVU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMVU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-10A-01D	DNA	EFO	SRS375194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C04	SRX204281		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54819-FS3_L01.bam	SRR616542	@dbgap@:reads/SRP012006/SRS375194/SRX204281/SRR616542/SRR616542.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMVU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMVU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-10A-01D	DNA	EFO	SRS375194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C04	SRX204281		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54819-FS3_L01.bam	SRR616542	@dbgap@:reads/SRP012006/SRS375194/SRX204281/SRR616542/SRR616542.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMVU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMVU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-10A-01D	DNA	EFO	SRS375194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C04	SRX204281		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54819-FS3_L01.bam	SRR616542	@dbgap@:reads/SRP012006/SRS375194/SRX204281/SRR616542/SRR616542.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMVU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMVU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-10A-01D	DNA	EFO	SRS375194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C04	SRX204281		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54819-FS3_L01.bam	SRR616542	@dbgap@:reads/SRP012006/SRS375194/SRX204281/SRR616542/SRR616542.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMVU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMVU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-10A-01D	DNA	EFO	SRS375194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C04	SRX204281		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54819-FS3_L01.bam	SRR616542	@dbgap@:reads/SRP012006/SRS375194/SRX204281/SRR616542/SRR616542.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMVU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMVU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-10A-01D	DNA	EFO	SRS375194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C04	SRX204281		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54819-FS3_L01.bam	SRR616542	@dbgap@:reads/SRP012006/SRS375194/SRX204281/SRR616542/SRR616542.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMVU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMVU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-10A-01D	DNA	EFO	SRS375194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C04	SRX204281		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54819-FS3_L01.bam	SRR616542	@dbgap@:reads/SRP012006/SRS375194/SRX204281/SRR616542/SRR616542.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-10A-01D	DNA	EFO	SRS375194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C04	SRX204281		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54819-FS3_L01.bam	SRR616542	@dbgap@:reads/SRP012006/SRS375194/SRX204281/SRR616542/SRR616542.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-10A-01D	DNA	EFO	SRS375194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C04	SRX204281		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMVU-10A-01D GS01103-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54819-FS3_L01.bam	SRR616542	@dbgap@:reads/SRP012006/SRS375194/SRX204281/SRR616542/SRR616542.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D05	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMXF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMXF_NormalVsPrimary.png	4			
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D05	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMXF_NormalVsPrimary.png	4			
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D05	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMXF_NormalVsPrimary.png	4			
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D05	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D05	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D05	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D05	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D05	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D05	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D05	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D05	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D05	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D05	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D05	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D05	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00673-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D10	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMXF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMXF_NormalVsPrimary.png	4			
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D10	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMXF_NormalVsPrimary.png	4			
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D10	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMXF_NormalVsPrimary.png	4			
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D10	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D10	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D10	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D10	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D10	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D10	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D10	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D10	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D10	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D10	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D10	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D10	SRX130206		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-01A-01D GS00667-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21233-FS3_L01.bam	SRR446215	@dbgap@:reads/SRP012006/SRS118135/SRX130206/SRR446215/SRR446215.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_C10	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMXF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMXF_NormalVsPrimary.png	4			
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_C10	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMXF_NormalVsPrimary.png	4			
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_C10	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMXF_NormalVsPrimary.png	4			
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_C10	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_C10	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_C10	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_C10	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_C10	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_C10	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_C10	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_C10	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_C10	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_C10	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_C10	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00677-CLS_C10	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00677-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D11	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMXF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMXF_NormalVsPrimary.png	4			
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D11	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMXF_NormalVsPrimary.png	4			
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D11	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMXF_NormalVsPrimary.png	4			
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D11	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D11	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D11	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D11	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D11	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D11	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D11	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D11	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D11	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D11	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D11	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_D11	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00667-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C06	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJMXF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMXF_NormalVsPrimary.png	4			
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C06	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMXF_NormalVsPrimary.png	4			
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C06	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJMXF_NormalVsPrimary.png	4			
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C06	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C06	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C06	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C06	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C06	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C06	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C06	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C06	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C06	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C06	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C06	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-10A-01D	DNA	EFO	SRS118136	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_C06	SRX130205		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJMXF-10A-01D GS00673-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20491-FS3_L01.bam	SRR446223	@dbgap@:reads/SRP012006/SRS118136/SRX130205/SRR446223/SRR446223.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-01A-01D	DNA	EFO	SRS190151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D04	SRX204289		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55350-FS3_L01.bam	SRR616585	@dbgap@:reads/SRP012006/SRS190151/SRX204289/SRR616585/SRR616585.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNAA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNAA_NormalVsPrimary.png	4			
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-01A-01D	DNA	EFO	SRS190151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D04	SRX204289		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55350-FS3_L01.bam	SRR616585	@dbgap@:reads/SRP012006/SRS190151/SRX204289/SRR616585/SRR616585.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNAA_NormalVsPrimary.png	4			
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-01A-01D	DNA	EFO	SRS190151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D04	SRX204289		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55350-FS3_L01.bam	SRR616585	@dbgap@:reads/SRP012006/SRS190151/SRX204289/SRR616585/SRR616585.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNAA_NormalVsPrimary.png	4			
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-01A-01D	DNA	EFO	SRS190151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D04	SRX204289		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55350-FS3_L01.bam	SRR616585	@dbgap@:reads/SRP012006/SRS190151/SRX204289/SRR616585/SRR616585.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNAA_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-01A-01D	DNA	EFO	SRS190151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D04	SRX204289		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55350-FS3_L01.bam	SRR616585	@dbgap@:reads/SRP012006/SRS190151/SRX204289/SRR616585/SRR616585.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-01A-01D	DNA	EFO	SRS190151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D04	SRX204289		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55350-FS3_L01.bam	SRR616585	@dbgap@:reads/SRP012006/SRS190151/SRX204289/SRR616585/SRR616585.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-01A-01D	DNA	EFO	SRS190151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D04	SRX204289		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55350-FS3_L01.bam	SRR616585	@dbgap@:reads/SRP012006/SRS190151/SRX204289/SRR616585/SRR616585.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-01A-01D	DNA	EFO	SRS190151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D04	SRX204289		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55350-FS3_L01.bam	SRR616585	@dbgap@:reads/SRP012006/SRS190151/SRX204289/SRR616585/SRR616585.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-01A-01D	DNA	EFO	SRS190151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D04	SRX204289		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55350-FS3_L01.bam	SRR616585	@dbgap@:reads/SRP012006/SRS190151/SRX204289/SRR616585/SRR616585.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-01A-01D	DNA	EFO	SRS190151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D04	SRX204289		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55350-FS3_L01.bam	SRR616585	@dbgap@:reads/SRP012006/SRS190151/SRX204289/SRR616585/SRR616585.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-01A-01D	DNA	EFO	SRS190151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D04	SRX204289		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55350-FS3_L01.bam	SRR616585	@dbgap@:reads/SRP012006/SRS190151/SRX204289/SRR616585/SRR616585.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-01A-01D	DNA	EFO	SRS190151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D04	SRX204289		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55350-FS3_L01.bam	SRR616585	@dbgap@:reads/SRP012006/SRS190151/SRX204289/SRR616585/SRR616585.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-01A-01D	DNA	EFO	SRS190151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D04	SRX204289		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55350-FS3_L01.bam	SRR616585	@dbgap@:reads/SRP012006/SRS190151/SRX204289/SRR616585/SRR616585.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-01A-01D	DNA	EFO	SRS190151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D04	SRX204289		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55350-FS3_L01.bam	SRR616585	@dbgap@:reads/SRP012006/SRS190151/SRX204289/SRR616585/SRR616585.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-01A-01D	DNA	EFO	SRS190151	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D04	SRX204289		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-01A-01D GS01103-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55350-FS3_L01.bam	SRR616585	@dbgap@:reads/SRP012006/SRS190151/SRX204289/SRR616585/SRR616585.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-10A-01D	DNA	EFO	SRS190152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E04	SRX204288		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55351-FS3_L01.bam	SRR616593	@dbgap@:reads/SRP012006/SRS190152/SRX204288/SRR616593/SRR616593.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNAA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNAA_NormalVsPrimary.png	4			
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-10A-01D	DNA	EFO	SRS190152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E04	SRX204288		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55351-FS3_L01.bam	SRR616593	@dbgap@:reads/SRP012006/SRS190152/SRX204288/SRR616593/SRR616593.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNAA_NormalVsPrimary.png	4			
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-10A-01D	DNA	EFO	SRS190152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E04	SRX204288		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55351-FS3_L01.bam	SRR616593	@dbgap@:reads/SRP012006/SRS190152/SRX204288/SRR616593/SRR616593.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNAA_NormalVsPrimary.png	4			
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-10A-01D	DNA	EFO	SRS190152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E04	SRX204288		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55351-FS3_L01.bam	SRR616593	@dbgap@:reads/SRP012006/SRS190152/SRX204288/SRR616593/SRR616593.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNAA_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-10A-01D	DNA	EFO	SRS190152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E04	SRX204288		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55351-FS3_L01.bam	SRR616593	@dbgap@:reads/SRP012006/SRS190152/SRX204288/SRR616593/SRR616593.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-10A-01D	DNA	EFO	SRS190152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E04	SRX204288		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55351-FS3_L01.bam	SRR616593	@dbgap@:reads/SRP012006/SRS190152/SRX204288/SRR616593/SRR616593.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-10A-01D	DNA	EFO	SRS190152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E04	SRX204288		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55351-FS3_L01.bam	SRR616593	@dbgap@:reads/SRP012006/SRS190152/SRX204288/SRR616593/SRR616593.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-10A-01D	DNA	EFO	SRS190152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E04	SRX204288		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55351-FS3_L01.bam	SRR616593	@dbgap@:reads/SRP012006/SRS190152/SRX204288/SRR616593/SRR616593.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-10A-01D	DNA	EFO	SRS190152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E04	SRX204288		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55351-FS3_L01.bam	SRR616593	@dbgap@:reads/SRP012006/SRS190152/SRX204288/SRR616593/SRR616593.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-10A-01D	DNA	EFO	SRS190152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E04	SRX204288		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55351-FS3_L01.bam	SRR616593	@dbgap@:reads/SRP012006/SRS190152/SRX204288/SRR616593/SRR616593.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-10A-01D	DNA	EFO	SRS190152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E04	SRX204288		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55351-FS3_L01.bam	SRR616593	@dbgap@:reads/SRP012006/SRS190152/SRX204288/SRR616593/SRR616593.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-10A-01D	DNA	EFO	SRS190152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E04	SRX204288		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55351-FS3_L01.bam	SRR616593	@dbgap@:reads/SRP012006/SRS190152/SRX204288/SRR616593/SRR616593.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-10A-01D	DNA	EFO	SRS190152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E04	SRX204288		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55351-FS3_L01.bam	SRR616593	@dbgap@:reads/SRP012006/SRS190152/SRX204288/SRR616593/SRR616593.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-10A-01D	DNA	EFO	SRS190152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E04	SRX204288		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55351-FS3_L01.bam	SRR616593	@dbgap@:reads/SRP012006/SRS190152/SRX204288/SRR616593/SRR616593.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-10A-01D	DNA	EFO	SRS190152	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E04	SRX204288		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAA-10A-01D GS01103-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55351-FS3_L01.bam	SRR616593	@dbgap@:reads/SRP012006/SRS190152/SRX204288/SRR616593/SRR616593.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-01A-01D	DNA	EFO	SRS190153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C03	SRX145269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40311-FS3_L03.bam	SRR492746	@dbgap@:reads/SRP012006/SRS190153/SRX145269/SRR492746/SRR492746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNAV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNAV_NormalVsPrimary.png	4			
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-01A-01D	DNA	EFO	SRS190153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C03	SRX145269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40311-FS3_L03.bam	SRR492746	@dbgap@:reads/SRP012006/SRS190153/SRX145269/SRR492746/SRR492746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNAV_NormalVsPrimary.png	4			
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-01A-01D	DNA	EFO	SRS190153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C03	SRX145269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40311-FS3_L03.bam	SRR492746	@dbgap@:reads/SRP012006/SRS190153/SRX145269/SRR492746/SRR492746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNAV_NormalVsPrimary.png	4			
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-01A-01D	DNA	EFO	SRS190153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C03	SRX145269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40311-FS3_L03.bam	SRR492746	@dbgap@:reads/SRP012006/SRS190153/SRX145269/SRR492746/SRR492746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNAV_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-01A-01D	DNA	EFO	SRS190153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C03	SRX145269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40311-FS3_L03.bam	SRR492746	@dbgap@:reads/SRP012006/SRS190153/SRX145269/SRR492746/SRR492746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-01A-01D	DNA	EFO	SRS190153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C03	SRX145269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40311-FS3_L03.bam	SRR492746	@dbgap@:reads/SRP012006/SRS190153/SRX145269/SRR492746/SRR492746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-01A-01D	DNA	EFO	SRS190153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C03	SRX145269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40311-FS3_L03.bam	SRR492746	@dbgap@:reads/SRP012006/SRS190153/SRX145269/SRR492746/SRR492746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-01A-01D	DNA	EFO	SRS190153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C03	SRX145269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40311-FS3_L03.bam	SRR492746	@dbgap@:reads/SRP012006/SRS190153/SRX145269/SRR492746/SRR492746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-01A-01D	DNA	EFO	SRS190153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C03	SRX145269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40311-FS3_L03.bam	SRR492746	@dbgap@:reads/SRP012006/SRS190153/SRX145269/SRR492746/SRR492746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-01A-01D	DNA	EFO	SRS190153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C03	SRX145269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40311-FS3_L03.bam	SRR492746	@dbgap@:reads/SRP012006/SRS190153/SRX145269/SRR492746/SRR492746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-01A-01D	DNA	EFO	SRS190153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C03	SRX145269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40311-FS3_L03.bam	SRR492746	@dbgap@:reads/SRP012006/SRS190153/SRX145269/SRR492746/SRR492746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-01A-01D	DNA	EFO	SRS190153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C03	SRX145269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40311-FS3_L03.bam	SRR492746	@dbgap@:reads/SRP012006/SRS190153/SRX145269/SRR492746/SRR492746.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-01A-01D	DNA	EFO	SRS190153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C03	SRX145269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40311-FS3_L03.bam	SRR492746	@dbgap@:reads/SRP012006/SRS190153/SRX145269/SRR492746/SRR492746.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-01A-01D	DNA	EFO	SRS190153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C03	SRX145269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40311-FS3_L03.bam	SRR492746	@dbgap@:reads/SRP012006/SRS190153/SRX145269/SRR492746/SRR492746.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-01A-01D	DNA	EFO	SRS190153	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C03	SRX145269		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-01A-01D GS00939-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40311-FS3_L03.bam	SRR492746	@dbgap@:reads/SRP012006/SRS190153/SRX145269/SRR492746/SRR492746.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-11A-01D	DNA	EFO	SRS190154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A06	SRX145268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41590-FS3_L01.bam	SRR492752	@dbgap@:reads/SRP012006/SRS190154/SRX145268/SRR492752/SRR492752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNAV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNAV_NormalVsPrimary.png	4			
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-11A-01D	DNA	EFO	SRS190154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A06	SRX145268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41590-FS3_L01.bam	SRR492752	@dbgap@:reads/SRP012006/SRS190154/SRX145268/SRR492752/SRR492752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNAV_NormalVsPrimary.png	4			
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-11A-01D	DNA	EFO	SRS190154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A06	SRX145268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41590-FS3_L01.bam	SRR492752	@dbgap@:reads/SRP012006/SRS190154/SRX145268/SRR492752/SRR492752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNAV_NormalVsPrimary.png	4			
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-11A-01D	DNA	EFO	SRS190154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A06	SRX145268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41590-FS3_L01.bam	SRR492752	@dbgap@:reads/SRP012006/SRS190154/SRX145268/SRR492752/SRR492752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNAV_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-11A-01D	DNA	EFO	SRS190154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A06	SRX145268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41590-FS3_L01.bam	SRR492752	@dbgap@:reads/SRP012006/SRS190154/SRX145268/SRR492752/SRR492752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-11A-01D	DNA	EFO	SRS190154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A06	SRX145268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41590-FS3_L01.bam	SRR492752	@dbgap@:reads/SRP012006/SRS190154/SRX145268/SRR492752/SRR492752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-11A-01D	DNA	EFO	SRS190154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A06	SRX145268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41590-FS3_L01.bam	SRR492752	@dbgap@:reads/SRP012006/SRS190154/SRX145268/SRR492752/SRR492752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-11A-01D	DNA	EFO	SRS190154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A06	SRX145268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41590-FS3_L01.bam	SRR492752	@dbgap@:reads/SRP012006/SRS190154/SRX145268/SRR492752/SRR492752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-11A-01D	DNA	EFO	SRS190154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A06	SRX145268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41590-FS3_L01.bam	SRR492752	@dbgap@:reads/SRP012006/SRS190154/SRX145268/SRR492752/SRR492752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-11A-01D	DNA	EFO	SRS190154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A06	SRX145268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41590-FS3_L01.bam	SRR492752	@dbgap@:reads/SRP012006/SRS190154/SRX145268/SRR492752/SRR492752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-11A-01D	DNA	EFO	SRS190154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A06	SRX145268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41590-FS3_L01.bam	SRR492752	@dbgap@:reads/SRP012006/SRS190154/SRX145268/SRR492752/SRR492752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-11A-01D	DNA	EFO	SRS190154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A06	SRX145268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41590-FS3_L01.bam	SRR492752	@dbgap@:reads/SRP012006/SRS190154/SRX145268/SRR492752/SRR492752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNAV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNAV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-11A-01D	DNA	EFO	SRS190154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A06	SRX145268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41590-FS3_L01.bam	SRR492752	@dbgap@:reads/SRP012006/SRS190154/SRX145268/SRR492752/SRR492752.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-11A-01D	DNA	EFO	SRS190154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A06	SRX145268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41590-FS3_L01.bam	SRR492752	@dbgap@:reads/SRP012006/SRS190154/SRX145268/SRR492752/SRR492752.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-11A-01D	DNA	EFO	SRS190154	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A06	SRX145268		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNAV-11A-01D GS00939-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41590-FS3_L01.bam	SRR492752	@dbgap@:reads/SRP012006/SRS190154/SRX145268/SRR492752/SRR492752.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-01A-01D	DNA	EFO	SRS301278	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B08	SRX202103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52016-FS3_L01.bam	SRR610152	@dbgap@:reads/SRP012006/SRS301278/SRX202103/SRR610152/SRR610152.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNCC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNCC_NormalVsPrimary.png	4			
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-01A-01D	DNA	EFO	SRS301278	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B08	SRX202103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52016-FS3_L01.bam	SRR610152	@dbgap@:reads/SRP012006/SRS301278/SRX202103/SRR610152/SRR610152.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNCC_NormalVsPrimary.png	4			
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-01A-01D	DNA	EFO	SRS301278	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B08	SRX202103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52016-FS3_L01.bam	SRR610152	@dbgap@:reads/SRP012006/SRS301278/SRX202103/SRR610152/SRR610152.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNCC_NormalVsPrimary.png	4			
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-01A-01D	DNA	EFO	SRS301278	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B08	SRX202103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52016-FS3_L01.bam	SRR610152	@dbgap@:reads/SRP012006/SRS301278/SRX202103/SRR610152/SRR610152.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNCC_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-01A-01D	DNA	EFO	SRS301278	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B08	SRX202103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52016-FS3_L01.bam	SRR610152	@dbgap@:reads/SRP012006/SRS301278/SRX202103/SRR610152/SRR610152.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-01A-01D	DNA	EFO	SRS301278	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B08	SRX202103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52016-FS3_L01.bam	SRR610152	@dbgap@:reads/SRP012006/SRS301278/SRX202103/SRR610152/SRR610152.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-01A-01D	DNA	EFO	SRS301278	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B08	SRX202103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52016-FS3_L01.bam	SRR610152	@dbgap@:reads/SRP012006/SRS301278/SRX202103/SRR610152/SRR610152.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-01A-01D	DNA	EFO	SRS301278	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B08	SRX202103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52016-FS3_L01.bam	SRR610152	@dbgap@:reads/SRP012006/SRS301278/SRX202103/SRR610152/SRR610152.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-01A-01D	DNA	EFO	SRS301278	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B08	SRX202103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52016-FS3_L01.bam	SRR610152	@dbgap@:reads/SRP012006/SRS301278/SRX202103/SRR610152/SRR610152.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-01A-01D	DNA	EFO	SRS301278	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B08	SRX202103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52016-FS3_L01.bam	SRR610152	@dbgap@:reads/SRP012006/SRS301278/SRX202103/SRR610152/SRR610152.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-01A-01D	DNA	EFO	SRS301278	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B08	SRX202103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52016-FS3_L01.bam	SRR610152	@dbgap@:reads/SRP012006/SRS301278/SRX202103/SRR610152/SRR610152.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-01A-01D	DNA	EFO	SRS301278	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B08	SRX202103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52016-FS3_L01.bam	SRR610152	@dbgap@:reads/SRP012006/SRS301278/SRX202103/SRR610152/SRR610152.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-01A-01D	DNA	EFO	SRS301278	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B08	SRX202103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52016-FS3_L01.bam	SRR610152	@dbgap@:reads/SRP012006/SRS301278/SRX202103/SRR610152/SRR610152.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-01A-01D	DNA	EFO	SRS301278	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B08	SRX202103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52016-FS3_L01.bam	SRR610152	@dbgap@:reads/SRP012006/SRS301278/SRX202103/SRR610152/SRR610152.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-01A-01D	DNA	EFO	SRS301278	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B08	SRX202103		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-01A-01D GS01073-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52016-FS3_L01.bam	SRR610152	@dbgap@:reads/SRP012006/SRS301278/SRX202103/SRR610152/SRR610152.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-11A-01D	DNA	EFO	SRS373602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H10	SRX202102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52017-FS3_L01.bam	SRR610160	@dbgap@:reads/SRP012006/SRS373602/SRX202102/SRR610160/SRR610160.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNCC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNCC_NormalVsPrimary.png	4			
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-11A-01D	DNA	EFO	SRS373602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H10	SRX202102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52017-FS3_L01.bam	SRR610160	@dbgap@:reads/SRP012006/SRS373602/SRX202102/SRR610160/SRR610160.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNCC_NormalVsPrimary.png	4			
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-11A-01D	DNA	EFO	SRS373602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H10	SRX202102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52017-FS3_L01.bam	SRR610160	@dbgap@:reads/SRP012006/SRS373602/SRX202102/SRR610160/SRR610160.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNCC_NormalVsPrimary.png	4			
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-11A-01D	DNA	EFO	SRS373602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H10	SRX202102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52017-FS3_L01.bam	SRR610160	@dbgap@:reads/SRP012006/SRS373602/SRX202102/SRR610160/SRR610160.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNCC_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-11A-01D	DNA	EFO	SRS373602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H10	SRX202102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52017-FS3_L01.bam	SRR610160	@dbgap@:reads/SRP012006/SRS373602/SRX202102/SRR610160/SRR610160.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-11A-01D	DNA	EFO	SRS373602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H10	SRX202102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52017-FS3_L01.bam	SRR610160	@dbgap@:reads/SRP012006/SRS373602/SRX202102/SRR610160/SRR610160.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-11A-01D	DNA	EFO	SRS373602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H10	SRX202102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52017-FS3_L01.bam	SRR610160	@dbgap@:reads/SRP012006/SRS373602/SRX202102/SRR610160/SRR610160.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-11A-01D	DNA	EFO	SRS373602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H10	SRX202102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52017-FS3_L01.bam	SRR610160	@dbgap@:reads/SRP012006/SRS373602/SRX202102/SRR610160/SRR610160.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-11A-01D	DNA	EFO	SRS373602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H10	SRX202102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52017-FS3_L01.bam	SRR610160	@dbgap@:reads/SRP012006/SRS373602/SRX202102/SRR610160/SRR610160.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-11A-01D	DNA	EFO	SRS373602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H10	SRX202102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52017-FS3_L01.bam	SRR610160	@dbgap@:reads/SRP012006/SRS373602/SRX202102/SRR610160/SRR610160.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-11A-01D	DNA	EFO	SRS373602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H10	SRX202102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52017-FS3_L01.bam	SRR610160	@dbgap@:reads/SRP012006/SRS373602/SRX202102/SRR610160/SRR610160.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-11A-01D	DNA	EFO	SRS373602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H10	SRX202102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52017-FS3_L01.bam	SRR610160	@dbgap@:reads/SRP012006/SRS373602/SRX202102/SRR610160/SRR610160.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-11A-01D	DNA	EFO	SRS373602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H10	SRX202102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52017-FS3_L01.bam	SRR610160	@dbgap@:reads/SRP012006/SRS373602/SRX202102/SRR610160/SRR610160.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-11A-01D	DNA	EFO	SRS373602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H10	SRX202102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52017-FS3_L01.bam	SRR610160	@dbgap@:reads/SRP012006/SRS373602/SRX202102/SRR610160/SRR610160.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-11A-01D	DNA	EFO	SRS373602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H10	SRX202102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCC-11A-01D GS01073-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52017-FS3_L01.bam	SRR610160	@dbgap@:reads/SRP012006/SRS373602/SRX202102/SRR610160/SRR610160.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-01A-01D	DNA	EFO	SRS301280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C08	SRX193172		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51308-FS3_L01.bam	SRR584044	@dbgap@:reads/SRP012006/SRS301280/SRX193172/SRR584044/SRR584044.sra	2	GRCh37	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNCJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNCJ_NormalVsPrimary.png	4			
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-01A-01D	DNA	EFO	SRS301280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C08	SRX193172		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51308-FS3_L01.bam	SRR584044	@dbgap@:reads/SRP012006/SRS301280/SRX193172/SRR584044/SRR584044.sra	2	GRCh37	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNCJ_NormalVsPrimary.png	4			
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-01A-01D	DNA	EFO	SRS301280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C08	SRX193172		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51308-FS3_L01.bam	SRR584044	@dbgap@:reads/SRP012006/SRS301280/SRX193172/SRR584044/SRR584044.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNCJ_NormalVsPrimary.png	4			
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-01A-01D	DNA	EFO	SRS301280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C08	SRX193172		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51308-FS3_L01.bam	SRR584044	@dbgap@:reads/SRP012006/SRS301280/SRX193172/SRR584044/SRR584044.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNCJ_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-01A-01D	DNA	EFO	SRS301280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C08	SRX193172		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51308-FS3_L01.bam	SRR584044	@dbgap@:reads/SRP012006/SRS301280/SRX193172/SRR584044/SRR584044.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-01A-01D	DNA	EFO	SRS301280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C08	SRX193172		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51308-FS3_L01.bam	SRR584044	@dbgap@:reads/SRP012006/SRS301280/SRX193172/SRR584044/SRR584044.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-01A-01D	DNA	EFO	SRS301280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C08	SRX193172		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51308-FS3_L01.bam	SRR584044	@dbgap@:reads/SRP012006/SRS301280/SRX193172/SRR584044/SRR584044.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-01A-01D	DNA	EFO	SRS301280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C08	SRX193172		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51308-FS3_L01.bam	SRR584044	@dbgap@:reads/SRP012006/SRS301280/SRX193172/SRR584044/SRR584044.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-01A-01D	DNA	EFO	SRS301280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C08	SRX193172		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51308-FS3_L01.bam	SRR584044	@dbgap@:reads/SRP012006/SRS301280/SRX193172/SRR584044/SRR584044.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-01A-01D	DNA	EFO	SRS301280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C08	SRX193172		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51308-FS3_L01.bam	SRR584044	@dbgap@:reads/SRP012006/SRS301280/SRX193172/SRR584044/SRR584044.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-01A-01D	DNA	EFO	SRS301280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C08	SRX193172		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51308-FS3_L01.bam	SRR584044	@dbgap@:reads/SRP012006/SRS301280/SRX193172/SRR584044/SRR584044.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-01A-01D	DNA	EFO	SRS301280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C08	SRX193172		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51308-FS3_L01.bam	SRR584044	@dbgap@:reads/SRP012006/SRS301280/SRX193172/SRR584044/SRR584044.sra	2	GRCh37	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-01A-01D	DNA	EFO	SRS301280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C08	SRX193172		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51308-FS3_L01.bam	SRR584044	@dbgap@:reads/SRP012006/SRS301280/SRX193172/SRR584044/SRR584044.sra	2	GRCh37	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-01A-01D	DNA	EFO	SRS301280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C08	SRX193172		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51308-FS3_L01.bam	SRR584044	@dbgap@:reads/SRP012006/SRS301280/SRX193172/SRR584044/SRR584044.sra	2	GRCh37	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-01A-01D	DNA	EFO	SRS301280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C08	SRX193172		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-01A-01D GS01073-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51308-FS3_L01.bam	SRR584044	@dbgap@:reads/SRP012006/SRS301280/SRX193172/SRR584044/SRR584044.sra	2	GRCh37	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-11A-01D	DNA	EFO	SRS301281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A11	SRX193171		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52590-FS3_L01.bam	SRR584052	@dbgap@:reads/SRP012006/SRS301281/SRX193171/SRR584052/SRR584052.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNCJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNCJ_NormalVsPrimary.png	4			
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-11A-01D	DNA	EFO	SRS301281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A11	SRX193171		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52590-FS3_L01.bam	SRR584052	@dbgap@:reads/SRP012006/SRS301281/SRX193171/SRR584052/SRR584052.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNCJ_NormalVsPrimary.png	4			
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-11A-01D	DNA	EFO	SRS301281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A11	SRX193171		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52590-FS3_L01.bam	SRR584052	@dbgap@:reads/SRP012006/SRS301281/SRX193171/SRR584052/SRR584052.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNCJ_NormalVsPrimary.png	4			
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-11A-01D	DNA	EFO	SRS301281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A11	SRX193171		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52590-FS3_L01.bam	SRR584052	@dbgap@:reads/SRP012006/SRS301281/SRX193171/SRR584052/SRR584052.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNCJ_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-11A-01D	DNA	EFO	SRS301281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A11	SRX193171		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52590-FS3_L01.bam	SRR584052	@dbgap@:reads/SRP012006/SRS301281/SRX193171/SRR584052/SRR584052.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-11A-01D	DNA	EFO	SRS301281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A11	SRX193171		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52590-FS3_L01.bam	SRR584052	@dbgap@:reads/SRP012006/SRS301281/SRX193171/SRR584052/SRR584052.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-11A-01D	DNA	EFO	SRS301281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A11	SRX193171		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52590-FS3_L01.bam	SRR584052	@dbgap@:reads/SRP012006/SRS301281/SRX193171/SRR584052/SRR584052.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-11A-01D	DNA	EFO	SRS301281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A11	SRX193171		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52590-FS3_L01.bam	SRR584052	@dbgap@:reads/SRP012006/SRS301281/SRX193171/SRR584052/SRR584052.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-11A-01D	DNA	EFO	SRS301281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A11	SRX193171		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52590-FS3_L01.bam	SRR584052	@dbgap@:reads/SRP012006/SRS301281/SRX193171/SRR584052/SRR584052.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-11A-01D	DNA	EFO	SRS301281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A11	SRX193171		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52590-FS3_L01.bam	SRR584052	@dbgap@:reads/SRP012006/SRS301281/SRX193171/SRR584052/SRR584052.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-11A-01D	DNA	EFO	SRS301281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A11	SRX193171		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52590-FS3_L01.bam	SRR584052	@dbgap@:reads/SRP012006/SRS301281/SRX193171/SRR584052/SRR584052.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-11A-01D	DNA	EFO	SRS301281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A11	SRX193171		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52590-FS3_L01.bam	SRR584052	@dbgap@:reads/SRP012006/SRS301281/SRX193171/SRR584052/SRR584052.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-11A-01D	DNA	EFO	SRS301281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A11	SRX193171		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52590-FS3_L01.bam	SRR584052	@dbgap@:reads/SRP012006/SRS301281/SRX193171/SRR584052/SRR584052.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-11A-01D	DNA	EFO	SRS301281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A11	SRX193171		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52590-FS3_L01.bam	SRR584052	@dbgap@:reads/SRP012006/SRS301281/SRX193171/SRR584052/SRR584052.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-11A-01D	DNA	EFO	SRS301281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A11	SRX193171		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCJ-11A-01D GS01073-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52590-FS3_L01.bam	SRR584052	@dbgap@:reads/SRP012006/SRS301281/SRX193171/SRR584052/SRR584052.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-01A-01D	DNA	EFO	SRS301282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D08	SRX202097		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51279-FS3_L01.bam	SRR610104	@dbgap@:reads/SRP012006/SRS301282/SRX202097/SRR610104/SRR610104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNCZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNCZ_NormalVsPrimary.png	4			
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-01A-01D	DNA	EFO	SRS301282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D08	SRX202097		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51279-FS3_L01.bam	SRR610104	@dbgap@:reads/SRP012006/SRS301282/SRX202097/SRR610104/SRR610104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNCZ_NormalVsPrimary.png	4			
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-01A-01D	DNA	EFO	SRS301282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D08	SRX202097		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51279-FS3_L01.bam	SRR610104	@dbgap@:reads/SRP012006/SRS301282/SRX202097/SRR610104/SRR610104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNCZ_NormalVsPrimary.png	4			
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-01A-01D	DNA	EFO	SRS301282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D08	SRX202097		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51279-FS3_L01.bam	SRR610104	@dbgap@:reads/SRP012006/SRS301282/SRX202097/SRR610104/SRR610104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNCZ_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-01A-01D	DNA	EFO	SRS301282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D08	SRX202097		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51279-FS3_L01.bam	SRR610104	@dbgap@:reads/SRP012006/SRS301282/SRX202097/SRR610104/SRR610104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-01A-01D	DNA	EFO	SRS301282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D08	SRX202097		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51279-FS3_L01.bam	SRR610104	@dbgap@:reads/SRP012006/SRS301282/SRX202097/SRR610104/SRR610104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-01A-01D	DNA	EFO	SRS301282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D08	SRX202097		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51279-FS3_L01.bam	SRR610104	@dbgap@:reads/SRP012006/SRS301282/SRX202097/SRR610104/SRR610104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-01A-01D	DNA	EFO	SRS301282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D08	SRX202097		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51279-FS3_L01.bam	SRR610104	@dbgap@:reads/SRP012006/SRS301282/SRX202097/SRR610104/SRR610104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-01A-01D	DNA	EFO	SRS301282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D08	SRX202097		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51279-FS3_L01.bam	SRR610104	@dbgap@:reads/SRP012006/SRS301282/SRX202097/SRR610104/SRR610104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-01A-01D	DNA	EFO	SRS301282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D08	SRX202097		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51279-FS3_L01.bam	SRR610104	@dbgap@:reads/SRP012006/SRS301282/SRX202097/SRR610104/SRR610104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-01A-01D	DNA	EFO	SRS301282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D08	SRX202097		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51279-FS3_L01.bam	SRR610104	@dbgap@:reads/SRP012006/SRS301282/SRX202097/SRR610104/SRR610104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-01A-01D	DNA	EFO	SRS301282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D08	SRX202097		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51279-FS3_L01.bam	SRR610104	@dbgap@:reads/SRP012006/SRS301282/SRX202097/SRR610104/SRR610104.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-01A-01D	DNA	EFO	SRS301282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D08	SRX202097		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51279-FS3_L01.bam	SRR610104	@dbgap@:reads/SRP012006/SRS301282/SRX202097/SRR610104/SRR610104.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-01A-01D	DNA	EFO	SRS301282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D08	SRX202097		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51279-FS3_L01.bam	SRR610104	@dbgap@:reads/SRP012006/SRS301282/SRX202097/SRR610104/SRR610104.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-01A-01D	DNA	EFO	SRS301282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D08	SRX202097		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-01A-01D GS01073-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51279-FS3_L01.bam	SRR610104	@dbgap@:reads/SRP012006/SRS301282/SRX202097/SRR610104/SRR610104.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-11A-01D	DNA	EFO	SRS373599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B11	SRX202096		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51280-FS3_L01.bam	SRR610112	@dbgap@:reads/SRP012006/SRS373599/SRX202096/SRR610112/SRR610112.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNCZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNCZ_NormalVsPrimary.png	4			
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-11A-01D	DNA	EFO	SRS373599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B11	SRX202096		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51280-FS3_L01.bam	SRR610112	@dbgap@:reads/SRP012006/SRS373599/SRX202096/SRR610112/SRR610112.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNCZ_NormalVsPrimary.png	4			
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-11A-01D	DNA	EFO	SRS373599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B11	SRX202096		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51280-FS3_L01.bam	SRR610112	@dbgap@:reads/SRP012006/SRS373599/SRX202096/SRR610112/SRR610112.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNCZ_NormalVsPrimary.png	4			
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-11A-01D	DNA	EFO	SRS373599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B11	SRX202096		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51280-FS3_L01.bam	SRR610112	@dbgap@:reads/SRP012006/SRS373599/SRX202096/SRR610112/SRR610112.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNCZ_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-11A-01D	DNA	EFO	SRS373599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B11	SRX202096		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51280-FS3_L01.bam	SRR610112	@dbgap@:reads/SRP012006/SRS373599/SRX202096/SRR610112/SRR610112.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-11A-01D	DNA	EFO	SRS373599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B11	SRX202096		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51280-FS3_L01.bam	SRR610112	@dbgap@:reads/SRP012006/SRS373599/SRX202096/SRR610112/SRR610112.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-11A-01D	DNA	EFO	SRS373599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B11	SRX202096		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51280-FS3_L01.bam	SRR610112	@dbgap@:reads/SRP012006/SRS373599/SRX202096/SRR610112/SRR610112.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-11A-01D	DNA	EFO	SRS373599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B11	SRX202096		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51280-FS3_L01.bam	SRR610112	@dbgap@:reads/SRP012006/SRS373599/SRX202096/SRR610112/SRR610112.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-11A-01D	DNA	EFO	SRS373599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B11	SRX202096		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51280-FS3_L01.bam	SRR610112	@dbgap@:reads/SRP012006/SRS373599/SRX202096/SRR610112/SRR610112.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-11A-01D	DNA	EFO	SRS373599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B11	SRX202096		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51280-FS3_L01.bam	SRR610112	@dbgap@:reads/SRP012006/SRS373599/SRX202096/SRR610112/SRR610112.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-11A-01D	DNA	EFO	SRS373599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B11	SRX202096		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51280-FS3_L01.bam	SRR610112	@dbgap@:reads/SRP012006/SRS373599/SRX202096/SRR610112/SRR610112.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-11A-01D	DNA	EFO	SRS373599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B11	SRX202096		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51280-FS3_L01.bam	SRR610112	@dbgap@:reads/SRP012006/SRS373599/SRX202096/SRR610112/SRR610112.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNCZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNCZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-11A-01D	DNA	EFO	SRS373599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B11	SRX202096		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51280-FS3_L01.bam	SRR610112	@dbgap@:reads/SRP012006/SRS373599/SRX202096/SRR610112/SRR610112.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-11A-01D	DNA	EFO	SRS373599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B11	SRX202096		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51280-FS3_L01.bam	SRR610112	@dbgap@:reads/SRP012006/SRS373599/SRX202096/SRR610112/SRR610112.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-11A-01D	DNA	EFO	SRS373599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B11	SRX202096		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNCZ-11A-01D GS01073-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51280-FS3_L01.bam	SRR610112	@dbgap@:reads/SRP012006/SRS373599/SRX202096/SRR610112/SRR610112.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-01A-01D	DNA	EFO	SRS190157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D03	SRX148142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42554-FS3_L01.bam	SRR497034	@dbgap@:reads/SRP012006/SRS190157/SRX148142/SRR497034/SRR497034.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNDU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNDU_NormalVsPrimary.png	4			
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-01A-01D	DNA	EFO	SRS190157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D03	SRX148142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42554-FS3_L01.bam	SRR497034	@dbgap@:reads/SRP012006/SRS190157/SRX148142/SRR497034/SRR497034.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNDU_NormalVsPrimary.png	4			
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-01A-01D	DNA	EFO	SRS190157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D03	SRX148142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42554-FS3_L01.bam	SRR497034	@dbgap@:reads/SRP012006/SRS190157/SRX148142/SRR497034/SRR497034.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNDU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNDU_NormalVsPrimary.png	4			
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-01A-01D	DNA	EFO	SRS190157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D03	SRX148142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42554-FS3_L01.bam	SRR497034	@dbgap@:reads/SRP012006/SRS190157/SRX148142/SRR497034/SRR497034.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNDU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNDU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNDU_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-01A-01D	DNA	EFO	SRS190157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D03	SRX148142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42554-FS3_L01.bam	SRR497034	@dbgap@:reads/SRP012006/SRS190157/SRX148142/SRR497034/SRR497034.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNDU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNDU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-01A-01D	DNA	EFO	SRS190157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D03	SRX148142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42554-FS3_L01.bam	SRR497034	@dbgap@:reads/SRP012006/SRS190157/SRX148142/SRR497034/SRR497034.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNDU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNDU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-01A-01D	DNA	EFO	SRS190157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D03	SRX148142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42554-FS3_L01.bam	SRR497034	@dbgap@:reads/SRP012006/SRS190157/SRX148142/SRR497034/SRR497034.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNDU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNDU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-01A-01D	DNA	EFO	SRS190157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D03	SRX148142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42554-FS3_L01.bam	SRR497034	@dbgap@:reads/SRP012006/SRS190157/SRX148142/SRR497034/SRR497034.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNDU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNDU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-01A-01D	DNA	EFO	SRS190157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D03	SRX148142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42554-FS3_L01.bam	SRR497034	@dbgap@:reads/SRP012006/SRS190157/SRX148142/SRR497034/SRR497034.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNDU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNDU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-01A-01D	DNA	EFO	SRS190157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D03	SRX148142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42554-FS3_L01.bam	SRR497034	@dbgap@:reads/SRP012006/SRS190157/SRX148142/SRR497034/SRR497034.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNDU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNDU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-01A-01D	DNA	EFO	SRS190157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D03	SRX148142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42554-FS3_L01.bam	SRR497034	@dbgap@:reads/SRP012006/SRS190157/SRX148142/SRR497034/SRR497034.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNDU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNDU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-01A-01D	DNA	EFO	SRS190157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D03	SRX148142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42554-FS3_L01.bam	SRR497034	@dbgap@:reads/SRP012006/SRS190157/SRX148142/SRR497034/SRR497034.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNDU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNDU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-01A-01D	DNA	EFO	SRS190157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D03	SRX148142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42554-FS3_L01.bam	SRR497034	@dbgap@:reads/SRP012006/SRS190157/SRX148142/SRR497034/SRR497034.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-01A-01D	DNA	EFO	SRS190157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D03	SRX148142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42554-FS3_L01.bam	SRR497034	@dbgap@:reads/SRP012006/SRS190157/SRX148142/SRR497034/SRR497034.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-01A-01D	DNA	EFO	SRS190157	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D03	SRX148142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-01A-01D GS00939-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42554-FS3_L01.bam	SRR497034	@dbgap@:reads/SRP012006/SRS190157/SRX148142/SRR497034/SRR497034.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-11A-01D	DNA	EFO	SRS190158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B06	SRX148141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42553-FS3_L01.bam	SRR497042	@dbgap@:reads/SRP012006/SRS190158/SRX148141/SRR497042/SRR497042.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNDU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNDU_NormalVsPrimary.png	4			
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-11A-01D	DNA	EFO	SRS190158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B06	SRX148141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42553-FS3_L01.bam	SRR497042	@dbgap@:reads/SRP012006/SRS190158/SRX148141/SRR497042/SRR497042.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNDU_NormalVsPrimary.png	4			
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-11A-01D	DNA	EFO	SRS190158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B06	SRX148141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42553-FS3_L01.bam	SRR497042	@dbgap@:reads/SRP012006/SRS190158/SRX148141/SRR497042/SRR497042.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNDU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNDU_NormalVsPrimary.png	4			
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-11A-01D	DNA	EFO	SRS190158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B06	SRX148141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42553-FS3_L01.bam	SRR497042	@dbgap@:reads/SRP012006/SRS190158/SRX148141/SRR497042/SRR497042.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNDU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNDU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNDU_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-11A-01D	DNA	EFO	SRS190158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B06	SRX148141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42553-FS3_L01.bam	SRR497042	@dbgap@:reads/SRP012006/SRS190158/SRX148141/SRR497042/SRR497042.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNDU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNDU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-11A-01D	DNA	EFO	SRS190158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B06	SRX148141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42553-FS3_L01.bam	SRR497042	@dbgap@:reads/SRP012006/SRS190158/SRX148141/SRR497042/SRR497042.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNDU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNDU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-11A-01D	DNA	EFO	SRS190158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B06	SRX148141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42553-FS3_L01.bam	SRR497042	@dbgap@:reads/SRP012006/SRS190158/SRX148141/SRR497042/SRR497042.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNDU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNDU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-11A-01D	DNA	EFO	SRS190158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B06	SRX148141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42553-FS3_L01.bam	SRR497042	@dbgap@:reads/SRP012006/SRS190158/SRX148141/SRR497042/SRR497042.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNDU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNDU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-11A-01D	DNA	EFO	SRS190158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B06	SRX148141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42553-FS3_L01.bam	SRR497042	@dbgap@:reads/SRP012006/SRS190158/SRX148141/SRR497042/SRR497042.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNDU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNDU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-11A-01D	DNA	EFO	SRS190158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B06	SRX148141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42553-FS3_L01.bam	SRR497042	@dbgap@:reads/SRP012006/SRS190158/SRX148141/SRR497042/SRR497042.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNDU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNDU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-11A-01D	DNA	EFO	SRS190158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B06	SRX148141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42553-FS3_L01.bam	SRR497042	@dbgap@:reads/SRP012006/SRS190158/SRX148141/SRR497042/SRR497042.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNDU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNDU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-11A-01D	DNA	EFO	SRS190158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B06	SRX148141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42553-FS3_L01.bam	SRR497042	@dbgap@:reads/SRP012006/SRS190158/SRX148141/SRR497042/SRR497042.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNDU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNDU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-11A-01D	DNA	EFO	SRS190158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B06	SRX148141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42553-FS3_L01.bam	SRR497042	@dbgap@:reads/SRP012006/SRS190158/SRX148141/SRR497042/SRR497042.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-11A-01D	DNA	EFO	SRS190158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B06	SRX148141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42553-FS3_L01.bam	SRR497042	@dbgap@:reads/SRP012006/SRS190158/SRX148141/SRR497042/SRR497042.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-11A-01D	DNA	EFO	SRS190158	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_B06	SRX148141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNDU-11A-01D GS00939-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42553-FS3_L01.bam	SRR497042	@dbgap@:reads/SRP012006/SRS190158/SRX148141/SRR497042/SRR497042.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-01A-01D	DNA	EFO	SRS190159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E03	SRX147838		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43514-FS3_L01.bam	SRR496645	@dbgap@:reads/SRP012006/SRS190159/SRX147838/SRR496645/SRR496645.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNEC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNEC_NormalVsPrimary.png	4			
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-01A-01D	DNA	EFO	SRS190159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E03	SRX147838		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43514-FS3_L01.bam	SRR496645	@dbgap@:reads/SRP012006/SRS190159/SRX147838/SRR496645/SRR496645.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNEC_NormalVsPrimary.png	4			
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-01A-01D	DNA	EFO	SRS190159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E03	SRX147838		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43514-FS3_L01.bam	SRR496645	@dbgap@:reads/SRP012006/SRS190159/SRX147838/SRR496645/SRR496645.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNEC_NormalVsPrimary.png	4			
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-01A-01D	DNA	EFO	SRS190159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E03	SRX147838		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43514-FS3_L01.bam	SRR496645	@dbgap@:reads/SRP012006/SRS190159/SRX147838/SRR496645/SRR496645.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNEC_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-01A-01D	DNA	EFO	SRS190159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E03	SRX147838		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43514-FS3_L01.bam	SRR496645	@dbgap@:reads/SRP012006/SRS190159/SRX147838/SRR496645/SRR496645.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-01A-01D	DNA	EFO	SRS190159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E03	SRX147838		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43514-FS3_L01.bam	SRR496645	@dbgap@:reads/SRP012006/SRS190159/SRX147838/SRR496645/SRR496645.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-01A-01D	DNA	EFO	SRS190159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E03	SRX147838		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43514-FS3_L01.bam	SRR496645	@dbgap@:reads/SRP012006/SRS190159/SRX147838/SRR496645/SRR496645.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-01A-01D	DNA	EFO	SRS190159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E03	SRX147838		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43514-FS3_L01.bam	SRR496645	@dbgap@:reads/SRP012006/SRS190159/SRX147838/SRR496645/SRR496645.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-01A-01D	DNA	EFO	SRS190159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E03	SRX147838		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43514-FS3_L01.bam	SRR496645	@dbgap@:reads/SRP012006/SRS190159/SRX147838/SRR496645/SRR496645.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-01A-01D	DNA	EFO	SRS190159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E03	SRX147838		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43514-FS3_L01.bam	SRR496645	@dbgap@:reads/SRP012006/SRS190159/SRX147838/SRR496645/SRR496645.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-01A-01D	DNA	EFO	SRS190159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E03	SRX147838		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43514-FS3_L01.bam	SRR496645	@dbgap@:reads/SRP012006/SRS190159/SRX147838/SRR496645/SRR496645.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-01A-01D	DNA	EFO	SRS190159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E03	SRX147838		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43514-FS3_L01.bam	SRR496645	@dbgap@:reads/SRP012006/SRS190159/SRX147838/SRR496645/SRR496645.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-01A-01D	DNA	EFO	SRS190159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E03	SRX147838		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43514-FS3_L01.bam	SRR496645	@dbgap@:reads/SRP012006/SRS190159/SRX147838/SRR496645/SRR496645.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-01A-01D	DNA	EFO	SRS190159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E03	SRX147838		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43514-FS3_L01.bam	SRR496645	@dbgap@:reads/SRP012006/SRS190159/SRX147838/SRR496645/SRR496645.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-01A-01D	DNA	EFO	SRS190159	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_E03	SRX147838		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-01A-01D GS00939-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43514-FS3_L01.bam	SRR496645	@dbgap@:reads/SRP012006/SRS190159/SRX147838/SRR496645/SRR496645.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-11A-01D	DNA	EFO	SRS190160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C06	SRX147837		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42555-FS3_L01.bam	SRR496653	@dbgap@:reads/SRP012006/SRS190160/SRX147837/SRR496653/SRR496653.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNEC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNEC_NormalVsPrimary.png	4			
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-11A-01D	DNA	EFO	SRS190160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C06	SRX147837		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42555-FS3_L01.bam	SRR496653	@dbgap@:reads/SRP012006/SRS190160/SRX147837/SRR496653/SRR496653.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNEC_NormalVsPrimary.png	4			
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-11A-01D	DNA	EFO	SRS190160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C06	SRX147837		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42555-FS3_L01.bam	SRR496653	@dbgap@:reads/SRP012006/SRS190160/SRX147837/SRR496653/SRR496653.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNEC_NormalVsPrimary.png	4			
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-11A-01D	DNA	EFO	SRS190160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C06	SRX147837		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42555-FS3_L01.bam	SRR496653	@dbgap@:reads/SRP012006/SRS190160/SRX147837/SRR496653/SRR496653.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNEC_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-11A-01D	DNA	EFO	SRS190160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C06	SRX147837		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42555-FS3_L01.bam	SRR496653	@dbgap@:reads/SRP012006/SRS190160/SRX147837/SRR496653/SRR496653.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-11A-01D	DNA	EFO	SRS190160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C06	SRX147837		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42555-FS3_L01.bam	SRR496653	@dbgap@:reads/SRP012006/SRS190160/SRX147837/SRR496653/SRR496653.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-11A-01D	DNA	EFO	SRS190160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C06	SRX147837		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42555-FS3_L01.bam	SRR496653	@dbgap@:reads/SRP012006/SRS190160/SRX147837/SRR496653/SRR496653.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-11A-01D	DNA	EFO	SRS190160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C06	SRX147837		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42555-FS3_L01.bam	SRR496653	@dbgap@:reads/SRP012006/SRS190160/SRX147837/SRR496653/SRR496653.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-11A-01D	DNA	EFO	SRS190160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C06	SRX147837		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42555-FS3_L01.bam	SRR496653	@dbgap@:reads/SRP012006/SRS190160/SRX147837/SRR496653/SRR496653.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-11A-01D	DNA	EFO	SRS190160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C06	SRX147837		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42555-FS3_L01.bam	SRR496653	@dbgap@:reads/SRP012006/SRS190160/SRX147837/SRR496653/SRR496653.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-11A-01D	DNA	EFO	SRS190160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C06	SRX147837		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42555-FS3_L01.bam	SRR496653	@dbgap@:reads/SRP012006/SRS190160/SRX147837/SRR496653/SRR496653.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-11A-01D	DNA	EFO	SRS190160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C06	SRX147837		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42555-FS3_L01.bam	SRR496653	@dbgap@:reads/SRP012006/SRS190160/SRX147837/SRR496653/SRR496653.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNEC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNEC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-11A-01D	DNA	EFO	SRS190160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C06	SRX147837		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42555-FS3_L01.bam	SRR496653	@dbgap@:reads/SRP012006/SRS190160/SRX147837/SRR496653/SRR496653.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-11A-01D	DNA	EFO	SRS190160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C06	SRX147837		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42555-FS3_L01.bam	SRR496653	@dbgap@:reads/SRP012006/SRS190160/SRX147837/SRR496653/SRR496653.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-11A-01D	DNA	EFO	SRS190160	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_C06	SRX147837		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNEC-11A-01D GS00939-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42555-FS3_L01.bam	SRR496653	@dbgap@:reads/SRP012006/SRS190160/SRX147837/SRR496653/SRR496653.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-01A-01D	DNA	EFO	SRS301284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E08	SRX202099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51466-FS3_L01.bam	SRR610120	@dbgap@:reads/SRP012006/SRS301284/SRX202099/SRR610120/SRR610120.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNJJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNJJ_NormalVsPrimary.png	4			
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-01A-01D	DNA	EFO	SRS301284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E08	SRX202099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51466-FS3_L01.bam	SRR610120	@dbgap@:reads/SRP012006/SRS301284/SRX202099/SRR610120/SRR610120.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNJJ_NormalVsPrimary.png	4			
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-01A-01D	DNA	EFO	SRS301284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E08	SRX202099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51466-FS3_L01.bam	SRR610120	@dbgap@:reads/SRP012006/SRS301284/SRX202099/SRR610120/SRR610120.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNJJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNJJ_NormalVsPrimary.png	4			
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-01A-01D	DNA	EFO	SRS301284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E08	SRX202099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51466-FS3_L01.bam	SRR610120	@dbgap@:reads/SRP012006/SRS301284/SRX202099/SRR610120/SRR610120.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNJJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNJJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNJJ_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-01A-01D	DNA	EFO	SRS301284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E08	SRX202099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51466-FS3_L01.bam	SRR610120	@dbgap@:reads/SRP012006/SRS301284/SRX202099/SRR610120/SRR610120.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNJJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNJJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-01A-01D	DNA	EFO	SRS301284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E08	SRX202099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51466-FS3_L01.bam	SRR610120	@dbgap@:reads/SRP012006/SRS301284/SRX202099/SRR610120/SRR610120.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNJJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNJJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-01A-01D	DNA	EFO	SRS301284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E08	SRX202099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51466-FS3_L01.bam	SRR610120	@dbgap@:reads/SRP012006/SRS301284/SRX202099/SRR610120/SRR610120.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNJJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNJJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-01A-01D	DNA	EFO	SRS301284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E08	SRX202099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51466-FS3_L01.bam	SRR610120	@dbgap@:reads/SRP012006/SRS301284/SRX202099/SRR610120/SRR610120.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNJJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNJJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-01A-01D	DNA	EFO	SRS301284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E08	SRX202099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51466-FS3_L01.bam	SRR610120	@dbgap@:reads/SRP012006/SRS301284/SRX202099/SRR610120/SRR610120.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNJJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNJJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-01A-01D	DNA	EFO	SRS301284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E08	SRX202099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51466-FS3_L01.bam	SRR610120	@dbgap@:reads/SRP012006/SRS301284/SRX202099/SRR610120/SRR610120.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNJJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNJJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-01A-01D	DNA	EFO	SRS301284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E08	SRX202099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51466-FS3_L01.bam	SRR610120	@dbgap@:reads/SRP012006/SRS301284/SRX202099/SRR610120/SRR610120.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNJJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNJJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-01A-01D	DNA	EFO	SRS301284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E08	SRX202099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51466-FS3_L01.bam	SRR610120	@dbgap@:reads/SRP012006/SRS301284/SRX202099/SRR610120/SRR610120.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNJJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNJJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-01A-01D	DNA	EFO	SRS301284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E08	SRX202099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51466-FS3_L01.bam	SRR610120	@dbgap@:reads/SRP012006/SRS301284/SRX202099/SRR610120/SRR610120.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-01A-01D	DNA	EFO	SRS301284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E08	SRX202099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51466-FS3_L01.bam	SRR610120	@dbgap@:reads/SRP012006/SRS301284/SRX202099/SRR610120/SRR610120.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-01A-01D	DNA	EFO	SRS301284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E08	SRX202099		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-01A-01D GS01073-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51466-FS3_L01.bam	SRR610120	@dbgap@:reads/SRP012006/SRS301284/SRX202099/SRR610120/SRR610120.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-11A-01D	DNA	EFO	SRS373600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C11	SRX202098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51467-FS3_L01.bam	SRR610128	@dbgap@:reads/SRP012006/SRS373600/SRX202098/SRR610128/SRR610128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNJJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNJJ_NormalVsPrimary.png	4			
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-11A-01D	DNA	EFO	SRS373600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C11	SRX202098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51467-FS3_L01.bam	SRR610128	@dbgap@:reads/SRP012006/SRS373600/SRX202098/SRR610128/SRR610128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNJJ_NormalVsPrimary.png	4			
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-11A-01D	DNA	EFO	SRS373600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C11	SRX202098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51467-FS3_L01.bam	SRR610128	@dbgap@:reads/SRP012006/SRS373600/SRX202098/SRR610128/SRR610128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNJJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNJJ_NormalVsPrimary.png	4			
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-11A-01D	DNA	EFO	SRS373600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C11	SRX202098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51467-FS3_L01.bam	SRR610128	@dbgap@:reads/SRP012006/SRS373600/SRX202098/SRR610128/SRR610128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNJJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNJJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNJJ_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-11A-01D	DNA	EFO	SRS373600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C11	SRX202098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51467-FS3_L01.bam	SRR610128	@dbgap@:reads/SRP012006/SRS373600/SRX202098/SRR610128/SRR610128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNJJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNJJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-11A-01D	DNA	EFO	SRS373600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C11	SRX202098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51467-FS3_L01.bam	SRR610128	@dbgap@:reads/SRP012006/SRS373600/SRX202098/SRR610128/SRR610128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNJJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNJJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-11A-01D	DNA	EFO	SRS373600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C11	SRX202098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51467-FS3_L01.bam	SRR610128	@dbgap@:reads/SRP012006/SRS373600/SRX202098/SRR610128/SRR610128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNJJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNJJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-11A-01D	DNA	EFO	SRS373600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C11	SRX202098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51467-FS3_L01.bam	SRR610128	@dbgap@:reads/SRP012006/SRS373600/SRX202098/SRR610128/SRR610128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNJJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNJJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-11A-01D	DNA	EFO	SRS373600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C11	SRX202098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51467-FS3_L01.bam	SRR610128	@dbgap@:reads/SRP012006/SRS373600/SRX202098/SRR610128/SRR610128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNJJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNJJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-11A-01D	DNA	EFO	SRS373600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C11	SRX202098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51467-FS3_L01.bam	SRR610128	@dbgap@:reads/SRP012006/SRS373600/SRX202098/SRR610128/SRR610128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNJJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNJJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-11A-01D	DNA	EFO	SRS373600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C11	SRX202098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51467-FS3_L01.bam	SRR610128	@dbgap@:reads/SRP012006/SRS373600/SRX202098/SRR610128/SRR610128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNJJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNJJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-11A-01D	DNA	EFO	SRS373600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C11	SRX202098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51467-FS3_L01.bam	SRR610128	@dbgap@:reads/SRP012006/SRS373600/SRX202098/SRR610128/SRR610128.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNJJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNJJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-11A-01D	DNA	EFO	SRS373600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C11	SRX202098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51467-FS3_L01.bam	SRR610128	@dbgap@:reads/SRP012006/SRS373600/SRX202098/SRR610128/SRR610128.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-11A-01D	DNA	EFO	SRS373600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C11	SRX202098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51467-FS3_L01.bam	SRR610128	@dbgap@:reads/SRP012006/SRS373600/SRX202098/SRR610128/SRR610128.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-11A-01D	DNA	EFO	SRS373600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C11	SRX202098		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNJJ-11A-01D GS01073-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51467-FS3_L01.bam	SRR610128	@dbgap@:reads/SRP012006/SRS373600/SRX202098/SRR610128/SRR610128.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-01D	DNA	EFO	SRS190161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F03	SRX148666		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43549-FS3_L01.bam	SRR498334	@dbgap@:reads/SRP012006/SRS190161/SRX148666/SRR498334/SRR498334.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNNC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNNC_NormalVsPrimary.png	4			
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-01D	DNA	EFO	SRS190161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F03	SRX148666		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43549-FS3_L01.bam	SRR498334	@dbgap@:reads/SRP012006/SRS190161/SRX148666/SRR498334/SRR498334.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNNC_NormalVsPrimary.png	4			
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-01D	DNA	EFO	SRS190161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F03	SRX148666		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43549-FS3_L01.bam	SRR498334	@dbgap@:reads/SRP012006/SRS190161/SRX148666/SRR498334/SRR498334.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNNC_NormalVsPrimary.png	4			
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-01D	DNA	EFO	SRS190161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F03	SRX148666		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43549-FS3_L01.bam	SRR498334	@dbgap@:reads/SRP012006/SRS190161/SRX148666/SRR498334/SRR498334.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNNC_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-01D	DNA	EFO	SRS190161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F03	SRX148666		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43549-FS3_L01.bam	SRR498334	@dbgap@:reads/SRP012006/SRS190161/SRX148666/SRR498334/SRR498334.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-01D	DNA	EFO	SRS190161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F03	SRX148666		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43549-FS3_L01.bam	SRR498334	@dbgap@:reads/SRP012006/SRS190161/SRX148666/SRR498334/SRR498334.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-01D	DNA	EFO	SRS190161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F03	SRX148666		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43549-FS3_L01.bam	SRR498334	@dbgap@:reads/SRP012006/SRS190161/SRX148666/SRR498334/SRR498334.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-01D	DNA	EFO	SRS190161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F03	SRX148666		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43549-FS3_L01.bam	SRR498334	@dbgap@:reads/SRP012006/SRS190161/SRX148666/SRR498334/SRR498334.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-01D	DNA	EFO	SRS190161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F03	SRX148666		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43549-FS3_L01.bam	SRR498334	@dbgap@:reads/SRP012006/SRS190161/SRX148666/SRR498334/SRR498334.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-01D	DNA	EFO	SRS190161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F03	SRX148666		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43549-FS3_L01.bam	SRR498334	@dbgap@:reads/SRP012006/SRS190161/SRX148666/SRR498334/SRR498334.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-01D	DNA	EFO	SRS190161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F03	SRX148666		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43549-FS3_L01.bam	SRR498334	@dbgap@:reads/SRP012006/SRS190161/SRX148666/SRR498334/SRR498334.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-01D	DNA	EFO	SRS190161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F03	SRX148666		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43549-FS3_L01.bam	SRR498334	@dbgap@:reads/SRP012006/SRS190161/SRX148666/SRR498334/SRR498334.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-01D	DNA	EFO	SRS190161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F03	SRX148666		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43549-FS3_L01.bam	SRR498334	@dbgap@:reads/SRP012006/SRS190161/SRX148666/SRR498334/SRR498334.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-01D	DNA	EFO	SRS190161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F03	SRX148666		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43549-FS3_L01.bam	SRR498334	@dbgap@:reads/SRP012006/SRS190161/SRX148666/SRR498334/SRR498334.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-01D	DNA	EFO	SRS190161	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F03	SRX148666		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-01A-01D GS00939-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43549-FS3_L01.bam	SRR498334	@dbgap@:reads/SRP012006/SRS190161/SRX148666/SRR498334/SRR498334.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-11A-01D	DNA	EFO	SRS190162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D06	SRX148665		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42557-FS3_L01.bam	SRR498340	@dbgap@:reads/SRP012006/SRS190162/SRX148665/SRR498340/SRR498340.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNNC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNNC_NormalVsPrimary.png	4			
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-11A-01D	DNA	EFO	SRS190162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D06	SRX148665		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42557-FS3_L01.bam	SRR498340	@dbgap@:reads/SRP012006/SRS190162/SRX148665/SRR498340/SRR498340.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNNC_NormalVsPrimary.png	4			
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-11A-01D	DNA	EFO	SRS190162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D06	SRX148665		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42557-FS3_L01.bam	SRR498340	@dbgap@:reads/SRP012006/SRS190162/SRX148665/SRR498340/SRR498340.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNNC_NormalVsPrimary.png	4			
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-11A-01D	DNA	EFO	SRS190162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D06	SRX148665		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42557-FS3_L01.bam	SRR498340	@dbgap@:reads/SRP012006/SRS190162/SRX148665/SRR498340/SRR498340.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNNC_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-11A-01D	DNA	EFO	SRS190162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D06	SRX148665		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42557-FS3_L01.bam	SRR498340	@dbgap@:reads/SRP012006/SRS190162/SRX148665/SRR498340/SRR498340.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-11A-01D	DNA	EFO	SRS190162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D06	SRX148665		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42557-FS3_L01.bam	SRR498340	@dbgap@:reads/SRP012006/SRS190162/SRX148665/SRR498340/SRR498340.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-11A-01D	DNA	EFO	SRS190162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D06	SRX148665		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42557-FS3_L01.bam	SRR498340	@dbgap@:reads/SRP012006/SRS190162/SRX148665/SRR498340/SRR498340.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-11A-01D	DNA	EFO	SRS190162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D06	SRX148665		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42557-FS3_L01.bam	SRR498340	@dbgap@:reads/SRP012006/SRS190162/SRX148665/SRR498340/SRR498340.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-11A-01D	DNA	EFO	SRS190162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D06	SRX148665		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42557-FS3_L01.bam	SRR498340	@dbgap@:reads/SRP012006/SRS190162/SRX148665/SRR498340/SRR498340.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-11A-01D	DNA	EFO	SRS190162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D06	SRX148665		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42557-FS3_L01.bam	SRR498340	@dbgap@:reads/SRP012006/SRS190162/SRX148665/SRR498340/SRR498340.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-11A-01D	DNA	EFO	SRS190162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D06	SRX148665		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42557-FS3_L01.bam	SRR498340	@dbgap@:reads/SRP012006/SRS190162/SRX148665/SRR498340/SRR498340.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-11A-01D	DNA	EFO	SRS190162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D06	SRX148665		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42557-FS3_L01.bam	SRR498340	@dbgap@:reads/SRP012006/SRS190162/SRX148665/SRR498340/SRR498340.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-11A-01D	DNA	EFO	SRS190162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D06	SRX148665		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42557-FS3_L01.bam	SRR498340	@dbgap@:reads/SRP012006/SRS190162/SRX148665/SRR498340/SRR498340.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-11A-01D	DNA	EFO	SRS190162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D06	SRX148665		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42557-FS3_L01.bam	SRR498340	@dbgap@:reads/SRP012006/SRS190162/SRX148665/SRR498340/SRR498340.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-11A-01D	DNA	EFO	SRS190162	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_D06	SRX148665		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNNC-11A-01D GS00939-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42557-FS3_L01.bam	SRR498340	@dbgap@:reads/SRP012006/SRS190162/SRX148665/SRR498340/SRR498340.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-01A-01D	DNA	EFO	SRS190163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G03	SRX148719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42279-FS3_L01.bam	SRR498710	@dbgap@:reads/SRP012006/SRS190163/SRX148719/SRR498710/SRR498710.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNRL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNRL_NormalVsPrimary.png	4			
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-01A-01D	DNA	EFO	SRS190163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G03	SRX148719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42279-FS3_L01.bam	SRR498710	@dbgap@:reads/SRP012006/SRS190163/SRX148719/SRR498710/SRR498710.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNRL_NormalVsPrimary.png	4			
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-01A-01D	DNA	EFO	SRS190163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G03	SRX148719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42279-FS3_L01.bam	SRR498710	@dbgap@:reads/SRP012006/SRS190163/SRX148719/SRR498710/SRR498710.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNRL_NormalVsPrimary.png	4			
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-01A-01D	DNA	EFO	SRS190163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G03	SRX148719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42279-FS3_L01.bam	SRR498710	@dbgap@:reads/SRP012006/SRS190163/SRX148719/SRR498710/SRR498710.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNRL_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-01A-01D	DNA	EFO	SRS190163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G03	SRX148719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42279-FS3_L01.bam	SRR498710	@dbgap@:reads/SRP012006/SRS190163/SRX148719/SRR498710/SRR498710.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-01A-01D	DNA	EFO	SRS190163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G03	SRX148719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42279-FS3_L01.bam	SRR498710	@dbgap@:reads/SRP012006/SRS190163/SRX148719/SRR498710/SRR498710.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-01A-01D	DNA	EFO	SRS190163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G03	SRX148719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42279-FS3_L01.bam	SRR498710	@dbgap@:reads/SRP012006/SRS190163/SRX148719/SRR498710/SRR498710.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-01A-01D	DNA	EFO	SRS190163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G03	SRX148719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42279-FS3_L01.bam	SRR498710	@dbgap@:reads/SRP012006/SRS190163/SRX148719/SRR498710/SRR498710.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-01A-01D	DNA	EFO	SRS190163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G03	SRX148719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42279-FS3_L01.bam	SRR498710	@dbgap@:reads/SRP012006/SRS190163/SRX148719/SRR498710/SRR498710.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-01A-01D	DNA	EFO	SRS190163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G03	SRX148719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42279-FS3_L01.bam	SRR498710	@dbgap@:reads/SRP012006/SRS190163/SRX148719/SRR498710/SRR498710.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-01A-01D	DNA	EFO	SRS190163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G03	SRX148719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42279-FS3_L01.bam	SRR498710	@dbgap@:reads/SRP012006/SRS190163/SRX148719/SRR498710/SRR498710.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-01A-01D	DNA	EFO	SRS190163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G03	SRX148719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42279-FS3_L01.bam	SRR498710	@dbgap@:reads/SRP012006/SRS190163/SRX148719/SRR498710/SRR498710.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-01A-01D	DNA	EFO	SRS190163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G03	SRX148719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42279-FS3_L01.bam	SRR498710	@dbgap@:reads/SRP012006/SRS190163/SRX148719/SRR498710/SRR498710.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-01A-01D	DNA	EFO	SRS190163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G03	SRX148719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42279-FS3_L01.bam	SRR498710	@dbgap@:reads/SRP012006/SRS190163/SRX148719/SRR498710/SRR498710.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-01A-01D	DNA	EFO	SRS190163	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G03	SRX148719		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-01A-01D GS00939-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42279-FS3_L01.bam	SRR498710	@dbgap@:reads/SRP012006/SRS190163/SRX148719/SRR498710/SRR498710.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-11A-01D	DNA	EFO	SRS190164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F06	SRX148718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42280-FS3_L01.bam	SRR498718	@dbgap@:reads/SRP012006/SRS190164/SRX148718/SRR498718/SRR498718.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNRL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNRL_NormalVsPrimary.png	4			
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-11A-01D	DNA	EFO	SRS190164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F06	SRX148718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42280-FS3_L01.bam	SRR498718	@dbgap@:reads/SRP012006/SRS190164/SRX148718/SRR498718/SRR498718.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNRL_NormalVsPrimary.png	4			
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-11A-01D	DNA	EFO	SRS190164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F06	SRX148718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42280-FS3_L01.bam	SRR498718	@dbgap@:reads/SRP012006/SRS190164/SRX148718/SRR498718/SRR498718.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNRL_NormalVsPrimary.png	4			
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-11A-01D	DNA	EFO	SRS190164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F06	SRX148718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42280-FS3_L01.bam	SRR498718	@dbgap@:reads/SRP012006/SRS190164/SRX148718/SRR498718/SRR498718.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNRL_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-11A-01D	DNA	EFO	SRS190164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F06	SRX148718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42280-FS3_L01.bam	SRR498718	@dbgap@:reads/SRP012006/SRS190164/SRX148718/SRR498718/SRR498718.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-11A-01D	DNA	EFO	SRS190164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F06	SRX148718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42280-FS3_L01.bam	SRR498718	@dbgap@:reads/SRP012006/SRS190164/SRX148718/SRR498718/SRR498718.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-11A-01D	DNA	EFO	SRS190164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F06	SRX148718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42280-FS3_L01.bam	SRR498718	@dbgap@:reads/SRP012006/SRS190164/SRX148718/SRR498718/SRR498718.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-11A-01D	DNA	EFO	SRS190164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F06	SRX148718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42280-FS3_L01.bam	SRR498718	@dbgap@:reads/SRP012006/SRS190164/SRX148718/SRR498718/SRR498718.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-11A-01D	DNA	EFO	SRS190164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F06	SRX148718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42280-FS3_L01.bam	SRR498718	@dbgap@:reads/SRP012006/SRS190164/SRX148718/SRR498718/SRR498718.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-11A-01D	DNA	EFO	SRS190164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F06	SRX148718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42280-FS3_L01.bam	SRR498718	@dbgap@:reads/SRP012006/SRS190164/SRX148718/SRR498718/SRR498718.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-11A-01D	DNA	EFO	SRS190164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F06	SRX148718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42280-FS3_L01.bam	SRR498718	@dbgap@:reads/SRP012006/SRS190164/SRX148718/SRR498718/SRR498718.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-11A-01D	DNA	EFO	SRS190164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F06	SRX148718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42280-FS3_L01.bam	SRR498718	@dbgap@:reads/SRP012006/SRS190164/SRX148718/SRR498718/SRR498718.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNRL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNRL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-11A-01D	DNA	EFO	SRS190164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F06	SRX148718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42280-FS3_L01.bam	SRR498718	@dbgap@:reads/SRP012006/SRS190164/SRX148718/SRR498718/SRR498718.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-11A-01D	DNA	EFO	SRS190164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F06	SRX148718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42280-FS3_L01.bam	SRR498718	@dbgap@:reads/SRP012006/SRS190164/SRX148718/SRR498718/SRR498718.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-11A-01D	DNA	EFO	SRS190164	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_F06	SRX148718		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNRL-11A-01D GS00939-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42280-FS3_L01.bam	SRR498718	@dbgap@:reads/SRP012006/SRS190164/SRX148718/SRR498718/SRR498718.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-01A-01D	DNA	EFO	SRS301287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F08	SRX202101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51941-FS3_L01.bam	SRR610136	@dbgap@:reads/SRP012006/SRS301287/SRX202101/SRR610136/SRR610136.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNSL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNSL_NormalVsPrimary.png	4			
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-01A-01D	DNA	EFO	SRS301287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F08	SRX202101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51941-FS3_L01.bam	SRR610136	@dbgap@:reads/SRP012006/SRS301287/SRX202101/SRR610136/SRR610136.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNSL_NormalVsPrimary.png	4			
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-01A-01D	DNA	EFO	SRS301287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F08	SRX202101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51941-FS3_L01.bam	SRR610136	@dbgap@:reads/SRP012006/SRS301287/SRX202101/SRR610136/SRR610136.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNSL_NormalVsPrimary.png	4			
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-01A-01D	DNA	EFO	SRS301287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F08	SRX202101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51941-FS3_L01.bam	SRR610136	@dbgap@:reads/SRP012006/SRS301287/SRX202101/SRR610136/SRR610136.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNSL_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-01A-01D	DNA	EFO	SRS301287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F08	SRX202101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51941-FS3_L01.bam	SRR610136	@dbgap@:reads/SRP012006/SRS301287/SRX202101/SRR610136/SRR610136.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-01A-01D	DNA	EFO	SRS301287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F08	SRX202101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51941-FS3_L01.bam	SRR610136	@dbgap@:reads/SRP012006/SRS301287/SRX202101/SRR610136/SRR610136.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-01A-01D	DNA	EFO	SRS301287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F08	SRX202101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51941-FS3_L01.bam	SRR610136	@dbgap@:reads/SRP012006/SRS301287/SRX202101/SRR610136/SRR610136.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-01A-01D	DNA	EFO	SRS301287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F08	SRX202101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51941-FS3_L01.bam	SRR610136	@dbgap@:reads/SRP012006/SRS301287/SRX202101/SRR610136/SRR610136.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-01A-01D	DNA	EFO	SRS301287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F08	SRX202101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51941-FS3_L01.bam	SRR610136	@dbgap@:reads/SRP012006/SRS301287/SRX202101/SRR610136/SRR610136.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-01A-01D	DNA	EFO	SRS301287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F08	SRX202101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51941-FS3_L01.bam	SRR610136	@dbgap@:reads/SRP012006/SRS301287/SRX202101/SRR610136/SRR610136.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-01A-01D	DNA	EFO	SRS301287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F08	SRX202101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51941-FS3_L01.bam	SRR610136	@dbgap@:reads/SRP012006/SRS301287/SRX202101/SRR610136/SRR610136.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-01A-01D	DNA	EFO	SRS301287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F08	SRX202101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51941-FS3_L01.bam	SRR610136	@dbgap@:reads/SRP012006/SRS301287/SRX202101/SRR610136/SRR610136.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-01A-01D	DNA	EFO	SRS301287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F08	SRX202101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51941-FS3_L01.bam	SRR610136	@dbgap@:reads/SRP012006/SRS301287/SRX202101/SRR610136/SRR610136.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-01A-01D	DNA	EFO	SRS301287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F08	SRX202101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51941-FS3_L01.bam	SRR610136	@dbgap@:reads/SRP012006/SRS301287/SRX202101/SRR610136/SRR610136.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-01A-01D	DNA	EFO	SRS301287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F08	SRX202101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-01A-01D GS01073-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51941-FS3_L01.bam	SRR610136	@dbgap@:reads/SRP012006/SRS301287/SRX202101/SRR610136/SRR610136.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-11A-01D	DNA	EFO	SRS373601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D11	SRX202100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51465-FS3_L01.bam	SRR610144	@dbgap@:reads/SRP012006/SRS373601/SRX202100/SRR610144/SRR610144.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNSL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNSL_NormalVsPrimary.png	4			
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-11A-01D	DNA	EFO	SRS373601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D11	SRX202100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51465-FS3_L01.bam	SRR610144	@dbgap@:reads/SRP012006/SRS373601/SRX202100/SRR610144/SRR610144.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNSL_NormalVsPrimary.png	4			
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-11A-01D	DNA	EFO	SRS373601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D11	SRX202100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51465-FS3_L01.bam	SRR610144	@dbgap@:reads/SRP012006/SRS373601/SRX202100/SRR610144/SRR610144.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNSL_NormalVsPrimary.png	4			
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-11A-01D	DNA	EFO	SRS373601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D11	SRX202100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51465-FS3_L01.bam	SRR610144	@dbgap@:reads/SRP012006/SRS373601/SRX202100/SRR610144/SRR610144.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNSL_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-11A-01D	DNA	EFO	SRS373601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D11	SRX202100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51465-FS3_L01.bam	SRR610144	@dbgap@:reads/SRP012006/SRS373601/SRX202100/SRR610144/SRR610144.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-11A-01D	DNA	EFO	SRS373601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D11	SRX202100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51465-FS3_L01.bam	SRR610144	@dbgap@:reads/SRP012006/SRS373601/SRX202100/SRR610144/SRR610144.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-11A-01D	DNA	EFO	SRS373601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D11	SRX202100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51465-FS3_L01.bam	SRR610144	@dbgap@:reads/SRP012006/SRS373601/SRX202100/SRR610144/SRR610144.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-11A-01D	DNA	EFO	SRS373601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D11	SRX202100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51465-FS3_L01.bam	SRR610144	@dbgap@:reads/SRP012006/SRS373601/SRX202100/SRR610144/SRR610144.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-11A-01D	DNA	EFO	SRS373601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D11	SRX202100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51465-FS3_L01.bam	SRR610144	@dbgap@:reads/SRP012006/SRS373601/SRX202100/SRR610144/SRR610144.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-11A-01D	DNA	EFO	SRS373601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D11	SRX202100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51465-FS3_L01.bam	SRR610144	@dbgap@:reads/SRP012006/SRS373601/SRX202100/SRR610144/SRR610144.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-11A-01D	DNA	EFO	SRS373601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D11	SRX202100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51465-FS3_L01.bam	SRR610144	@dbgap@:reads/SRP012006/SRS373601/SRX202100/SRR610144/SRR610144.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-11A-01D	DNA	EFO	SRS373601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D11	SRX202100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51465-FS3_L01.bam	SRR610144	@dbgap@:reads/SRP012006/SRS373601/SRX202100/SRR610144/SRR610144.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-11A-01D	DNA	EFO	SRS373601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D11	SRX202100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51465-FS3_L01.bam	SRR610144	@dbgap@:reads/SRP012006/SRS373601/SRX202100/SRR610144/SRR610144.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-11A-01D	DNA	EFO	SRS373601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D11	SRX202100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51465-FS3_L01.bam	SRR610144	@dbgap@:reads/SRP012006/SRS373601/SRX202100/SRR610144/SRR610144.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-11A-01D	DNA	EFO	SRS373601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D11	SRX202100		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNSL-11A-01D GS01073-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51465-FS3_L01.bam	SRR610144	@dbgap@:reads/SRP012006/SRS373601/SRX202100/SRR610144/SRR610144.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-01A-01D	DNA	EFO	SRS190165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D05	SRX204293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55429-FS3_L01.bam	SRR616615	@dbgap@:reads/SRP012006/SRS190165/SRX204293/SRR616615/SRR616615.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNUS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNUS_NormalVsPrimary.png	4			
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-01A-01D	DNA	EFO	SRS190165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D05	SRX204293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55429-FS3_L01.bam	SRR616615	@dbgap@:reads/SRP012006/SRS190165/SRX204293/SRR616615/SRR616615.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNUS_NormalVsPrimary.png	4			
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-01A-01D	DNA	EFO	SRS190165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D05	SRX204293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55429-FS3_L01.bam	SRR616615	@dbgap@:reads/SRP012006/SRS190165/SRX204293/SRR616615/SRR616615.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNUS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNUS_NormalVsPrimary.png	4			
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-01A-01D	DNA	EFO	SRS190165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D05	SRX204293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55429-FS3_L01.bam	SRR616615	@dbgap@:reads/SRP012006/SRS190165/SRX204293/SRR616615/SRR616615.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNUS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNUS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNUS_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-01A-01D	DNA	EFO	SRS190165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D05	SRX204293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55429-FS3_L01.bam	SRR616615	@dbgap@:reads/SRP012006/SRS190165/SRX204293/SRR616615/SRR616615.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNUS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNUS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-01A-01D	DNA	EFO	SRS190165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D05	SRX204293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55429-FS3_L01.bam	SRR616615	@dbgap@:reads/SRP012006/SRS190165/SRX204293/SRR616615/SRR616615.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNUS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNUS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-01A-01D	DNA	EFO	SRS190165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D05	SRX204293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55429-FS3_L01.bam	SRR616615	@dbgap@:reads/SRP012006/SRS190165/SRX204293/SRR616615/SRR616615.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNUS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNUS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-01A-01D	DNA	EFO	SRS190165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D05	SRX204293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55429-FS3_L01.bam	SRR616615	@dbgap@:reads/SRP012006/SRS190165/SRX204293/SRR616615/SRR616615.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNUS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNUS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-01A-01D	DNA	EFO	SRS190165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D05	SRX204293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55429-FS3_L01.bam	SRR616615	@dbgap@:reads/SRP012006/SRS190165/SRX204293/SRR616615/SRR616615.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNUS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNUS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-01A-01D	DNA	EFO	SRS190165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D05	SRX204293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55429-FS3_L01.bam	SRR616615	@dbgap@:reads/SRP012006/SRS190165/SRX204293/SRR616615/SRR616615.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNUS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNUS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-01A-01D	DNA	EFO	SRS190165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D05	SRX204293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55429-FS3_L01.bam	SRR616615	@dbgap@:reads/SRP012006/SRS190165/SRX204293/SRR616615/SRR616615.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNUS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNUS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-01A-01D	DNA	EFO	SRS190165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D05	SRX204293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55429-FS3_L01.bam	SRR616615	@dbgap@:reads/SRP012006/SRS190165/SRX204293/SRR616615/SRR616615.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNUS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNUS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-01A-01D	DNA	EFO	SRS190165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D05	SRX204293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55429-FS3_L01.bam	SRR616615	@dbgap@:reads/SRP012006/SRS190165/SRX204293/SRR616615/SRR616615.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-01A-01D	DNA	EFO	SRS190165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D05	SRX204293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55429-FS3_L01.bam	SRR616615	@dbgap@:reads/SRP012006/SRS190165/SRX204293/SRR616615/SRR616615.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-01A-01D	DNA	EFO	SRS190165	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D05	SRX204293		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-01A-01D GS01103-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55429-FS3_L01.bam	SRR616615	@dbgap@:reads/SRP012006/SRS190165/SRX204293/SRR616615/SRR616615.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-10A-01D	DNA	EFO	SRS190166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E05	SRX204292		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55431-FS3_L01.bam	SRR616622	@dbgap@:reads/SRP012006/SRS190166/SRX204292/SRR616622/SRR616622.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNUS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNUS_NormalVsPrimary.png	4			
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-10A-01D	DNA	EFO	SRS190166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E05	SRX204292		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55431-FS3_L01.bam	SRR616622	@dbgap@:reads/SRP012006/SRS190166/SRX204292/SRR616622/SRR616622.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNUS_NormalVsPrimary.png	4			
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-10A-01D	DNA	EFO	SRS190166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E05	SRX204292		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55431-FS3_L01.bam	SRR616622	@dbgap@:reads/SRP012006/SRS190166/SRX204292/SRR616622/SRR616622.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNUS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNUS_NormalVsPrimary.png	4			
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-10A-01D	DNA	EFO	SRS190166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E05	SRX204292		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55431-FS3_L01.bam	SRR616622	@dbgap@:reads/SRP012006/SRS190166/SRX204292/SRR616622/SRR616622.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNUS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNUS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNUS_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-10A-01D	DNA	EFO	SRS190166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E05	SRX204292		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55431-FS3_L01.bam	SRR616622	@dbgap@:reads/SRP012006/SRS190166/SRX204292/SRR616622/SRR616622.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNUS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNUS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-10A-01D	DNA	EFO	SRS190166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E05	SRX204292		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55431-FS3_L01.bam	SRR616622	@dbgap@:reads/SRP012006/SRS190166/SRX204292/SRR616622/SRR616622.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNUS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNUS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-10A-01D	DNA	EFO	SRS190166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E05	SRX204292		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55431-FS3_L01.bam	SRR616622	@dbgap@:reads/SRP012006/SRS190166/SRX204292/SRR616622/SRR616622.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNUS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNUS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-10A-01D	DNA	EFO	SRS190166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E05	SRX204292		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55431-FS3_L01.bam	SRR616622	@dbgap@:reads/SRP012006/SRS190166/SRX204292/SRR616622/SRR616622.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNUS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNUS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-10A-01D	DNA	EFO	SRS190166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E05	SRX204292		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55431-FS3_L01.bam	SRR616622	@dbgap@:reads/SRP012006/SRS190166/SRX204292/SRR616622/SRR616622.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNUS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNUS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-10A-01D	DNA	EFO	SRS190166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E05	SRX204292		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55431-FS3_L01.bam	SRR616622	@dbgap@:reads/SRP012006/SRS190166/SRX204292/SRR616622/SRR616622.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNUS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNUS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-10A-01D	DNA	EFO	SRS190166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E05	SRX204292		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55431-FS3_L01.bam	SRR616622	@dbgap@:reads/SRP012006/SRS190166/SRX204292/SRR616622/SRR616622.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNUS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNUS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-10A-01D	DNA	EFO	SRS190166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E05	SRX204292		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55431-FS3_L01.bam	SRR616622	@dbgap@:reads/SRP012006/SRS190166/SRX204292/SRR616622/SRR616622.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNUS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNUS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-10A-01D	DNA	EFO	SRS190166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E05	SRX204292		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55431-FS3_L01.bam	SRR616622	@dbgap@:reads/SRP012006/SRS190166/SRX204292/SRR616622/SRR616622.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-10A-01D	DNA	EFO	SRS190166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E05	SRX204292		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55431-FS3_L01.bam	SRR616622	@dbgap@:reads/SRP012006/SRS190166/SRX204292/SRR616622/SRR616622.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-10A-01D	DNA	EFO	SRS190166	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_E05	SRX204292		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNUS-10A-01D GS01103-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55431-FS3_L01.bam	SRR616622	@dbgap@:reads/SRP012006/SRS190166/SRX204292/SRR616622/SRR616622.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-01A-02D	DNA	EFO	SRS190167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G02	SRX145378		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40609-FS3_L03.bam	SRR492980	@dbgap@:reads/SRP012006/SRS190167/SRX145378/SRR492980/SRR492980.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNYT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNYT_NormalVsPrimary.png	4			
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-01A-02D	DNA	EFO	SRS190167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G02	SRX145378		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40609-FS3_L03.bam	SRR492980	@dbgap@:reads/SRP012006/SRS190167/SRX145378/SRR492980/SRR492980.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNYT_NormalVsPrimary.png	4			
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-01A-02D	DNA	EFO	SRS190167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G02	SRX145378		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40609-FS3_L03.bam	SRR492980	@dbgap@:reads/SRP012006/SRS190167/SRX145378/SRR492980/SRR492980.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNYT_NormalVsPrimary.png	4			
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-01A-02D	DNA	EFO	SRS190167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G02	SRX145378		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40609-FS3_L03.bam	SRR492980	@dbgap@:reads/SRP012006/SRS190167/SRX145378/SRR492980/SRR492980.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNYT_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-01A-02D	DNA	EFO	SRS190167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G02	SRX145378		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40609-FS3_L03.bam	SRR492980	@dbgap@:reads/SRP012006/SRS190167/SRX145378/SRR492980/SRR492980.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-01A-02D	DNA	EFO	SRS190167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G02	SRX145378		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40609-FS3_L03.bam	SRR492980	@dbgap@:reads/SRP012006/SRS190167/SRX145378/SRR492980/SRR492980.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-01A-02D	DNA	EFO	SRS190167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G02	SRX145378		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40609-FS3_L03.bam	SRR492980	@dbgap@:reads/SRP012006/SRS190167/SRX145378/SRR492980/SRR492980.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-01A-02D	DNA	EFO	SRS190167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G02	SRX145378		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40609-FS3_L03.bam	SRR492980	@dbgap@:reads/SRP012006/SRS190167/SRX145378/SRR492980/SRR492980.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-01A-02D	DNA	EFO	SRS190167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G02	SRX145378		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40609-FS3_L03.bam	SRR492980	@dbgap@:reads/SRP012006/SRS190167/SRX145378/SRR492980/SRR492980.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-01A-02D	DNA	EFO	SRS190167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G02	SRX145378		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40609-FS3_L03.bam	SRR492980	@dbgap@:reads/SRP012006/SRS190167/SRX145378/SRR492980/SRR492980.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-01A-02D	DNA	EFO	SRS190167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G02	SRX145378		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40609-FS3_L03.bam	SRR492980	@dbgap@:reads/SRP012006/SRS190167/SRX145378/SRR492980/SRR492980.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-01A-02D	DNA	EFO	SRS190167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G02	SRX145378		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40609-FS3_L03.bam	SRR492980	@dbgap@:reads/SRP012006/SRS190167/SRX145378/SRR492980/SRR492980.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-01A-02D	DNA	EFO	SRS190167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G02	SRX145378		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40609-FS3_L03.bam	SRR492980	@dbgap@:reads/SRP012006/SRS190167/SRX145378/SRR492980/SRR492980.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-01A-02D	DNA	EFO	SRS190167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G02	SRX145378		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40609-FS3_L03.bam	SRR492980	@dbgap@:reads/SRP012006/SRS190167/SRX145378/SRR492980/SRR492980.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-01A-02D	DNA	EFO	SRS190167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G02	SRX145378		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-01A-02D GS00941-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40609-FS3_L03.bam	SRR492980	@dbgap@:reads/SRP012006/SRS190167/SRX145378/SRR492980/SRR492980.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-11A-01D	DNA	EFO	SRS190168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F04	SRX145377		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42581-FS3_L01.bam	SRR492986	@dbgap@:reads/SRP012006/SRS190168/SRX145377/SRR492986/SRR492986.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNYT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNYT_NormalVsPrimary.png	4			
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-11A-01D	DNA	EFO	SRS190168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F04	SRX145377		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42581-FS3_L01.bam	SRR492986	@dbgap@:reads/SRP012006/SRS190168/SRX145377/SRR492986/SRR492986.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNYT_NormalVsPrimary.png	4			
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-11A-01D	DNA	EFO	SRS190168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F04	SRX145377		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42581-FS3_L01.bam	SRR492986	@dbgap@:reads/SRP012006/SRS190168/SRX145377/SRR492986/SRR492986.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNYT_NormalVsPrimary.png	4			
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-11A-01D	DNA	EFO	SRS190168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F04	SRX145377		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42581-FS3_L01.bam	SRR492986	@dbgap@:reads/SRP012006/SRS190168/SRX145377/SRR492986/SRR492986.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNYT_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-11A-01D	DNA	EFO	SRS190168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F04	SRX145377		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42581-FS3_L01.bam	SRR492986	@dbgap@:reads/SRP012006/SRS190168/SRX145377/SRR492986/SRR492986.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-11A-01D	DNA	EFO	SRS190168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F04	SRX145377		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42581-FS3_L01.bam	SRR492986	@dbgap@:reads/SRP012006/SRS190168/SRX145377/SRR492986/SRR492986.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-11A-01D	DNA	EFO	SRS190168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F04	SRX145377		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42581-FS3_L01.bam	SRR492986	@dbgap@:reads/SRP012006/SRS190168/SRX145377/SRR492986/SRR492986.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-11A-01D	DNA	EFO	SRS190168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F04	SRX145377		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42581-FS3_L01.bam	SRR492986	@dbgap@:reads/SRP012006/SRS190168/SRX145377/SRR492986/SRR492986.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-11A-01D	DNA	EFO	SRS190168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F04	SRX145377		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42581-FS3_L01.bam	SRR492986	@dbgap@:reads/SRP012006/SRS190168/SRX145377/SRR492986/SRR492986.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-11A-01D	DNA	EFO	SRS190168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F04	SRX145377		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42581-FS3_L01.bam	SRR492986	@dbgap@:reads/SRP012006/SRS190168/SRX145377/SRR492986/SRR492986.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-11A-01D	DNA	EFO	SRS190168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F04	SRX145377		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42581-FS3_L01.bam	SRR492986	@dbgap@:reads/SRP012006/SRS190168/SRX145377/SRR492986/SRR492986.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-11A-01D	DNA	EFO	SRS190168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F04	SRX145377		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42581-FS3_L01.bam	SRR492986	@dbgap@:reads/SRP012006/SRS190168/SRX145377/SRR492986/SRR492986.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-11A-01D	DNA	EFO	SRS190168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F04	SRX145377		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42581-FS3_L01.bam	SRR492986	@dbgap@:reads/SRP012006/SRS190168/SRX145377/SRR492986/SRR492986.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-11A-01D	DNA	EFO	SRS190168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F04	SRX145377		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42581-FS3_L01.bam	SRR492986	@dbgap@:reads/SRP012006/SRS190168/SRX145377/SRR492986/SRR492986.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-11A-01D	DNA	EFO	SRS190168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F04	SRX145377		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNYT-11A-01D GS00941-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42581-FS3_L01.bam	SRR492986	@dbgap@:reads/SRP012006/SRS190168/SRX145377/SRR492986/SRR492986.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-01A-01D	DNA	EFO	SRS190169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H03	SRX147836		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42277-FS3_L01.bam	SRR496629	@dbgap@:reads/SRP012006/SRS190169/SRX147836/SRR496629/SRR496629.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNZI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNZI_NormalVsPrimary.png	4			
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-01A-01D	DNA	EFO	SRS190169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H03	SRX147836		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42277-FS3_L01.bam	SRR496629	@dbgap@:reads/SRP012006/SRS190169/SRX147836/SRR496629/SRR496629.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNZI_NormalVsPrimary.png	4			
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-01A-01D	DNA	EFO	SRS190169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H03	SRX147836		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42277-FS3_L01.bam	SRR496629	@dbgap@:reads/SRP012006/SRS190169/SRX147836/SRR496629/SRR496629.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNZI_NormalVsPrimary.png	4			
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-01A-01D	DNA	EFO	SRS190169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H03	SRX147836		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42277-FS3_L01.bam	SRR496629	@dbgap@:reads/SRP012006/SRS190169/SRX147836/SRR496629/SRR496629.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNZI_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-01A-01D	DNA	EFO	SRS190169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H03	SRX147836		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42277-FS3_L01.bam	SRR496629	@dbgap@:reads/SRP012006/SRS190169/SRX147836/SRR496629/SRR496629.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-01A-01D	DNA	EFO	SRS190169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H03	SRX147836		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42277-FS3_L01.bam	SRR496629	@dbgap@:reads/SRP012006/SRS190169/SRX147836/SRR496629/SRR496629.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-01A-01D	DNA	EFO	SRS190169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H03	SRX147836		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42277-FS3_L01.bam	SRR496629	@dbgap@:reads/SRP012006/SRS190169/SRX147836/SRR496629/SRR496629.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-01A-01D	DNA	EFO	SRS190169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H03	SRX147836		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42277-FS3_L01.bam	SRR496629	@dbgap@:reads/SRP012006/SRS190169/SRX147836/SRR496629/SRR496629.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-01A-01D	DNA	EFO	SRS190169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H03	SRX147836		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42277-FS3_L01.bam	SRR496629	@dbgap@:reads/SRP012006/SRS190169/SRX147836/SRR496629/SRR496629.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-01A-01D	DNA	EFO	SRS190169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H03	SRX147836		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42277-FS3_L01.bam	SRR496629	@dbgap@:reads/SRP012006/SRS190169/SRX147836/SRR496629/SRR496629.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-01A-01D	DNA	EFO	SRS190169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H03	SRX147836		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42277-FS3_L01.bam	SRR496629	@dbgap@:reads/SRP012006/SRS190169/SRX147836/SRR496629/SRR496629.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-01A-01D	DNA	EFO	SRS190169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H03	SRX147836		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42277-FS3_L01.bam	SRR496629	@dbgap@:reads/SRP012006/SRS190169/SRX147836/SRR496629/SRR496629.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-01A-01D	DNA	EFO	SRS190169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H03	SRX147836		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42277-FS3_L01.bam	SRR496629	@dbgap@:reads/SRP012006/SRS190169/SRX147836/SRR496629/SRR496629.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-01A-01D	DNA	EFO	SRS190169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H03	SRX147836		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42277-FS3_L01.bam	SRR496629	@dbgap@:reads/SRP012006/SRS190169/SRX147836/SRR496629/SRR496629.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-01A-01D	DNA	EFO	SRS190169	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H03	SRX147836		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-01A-01D GS00939-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42277-FS3_L01.bam	SRR496629	@dbgap@:reads/SRP012006/SRS190169/SRX147836/SRR496629/SRR496629.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-11A-01D	DNA	EFO	SRS190170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G06	SRX147835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42278-FS3_L01.bam	SRR496637	@dbgap@:reads/SRP012006/SRS190170/SRX147835/SRR496637/SRR496637.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNZI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNZI_NormalVsPrimary.png	4			
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-11A-01D	DNA	EFO	SRS190170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G06	SRX147835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42278-FS3_L01.bam	SRR496637	@dbgap@:reads/SRP012006/SRS190170/SRX147835/SRR496637/SRR496637.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNZI_NormalVsPrimary.png	4			
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-11A-01D	DNA	EFO	SRS190170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G06	SRX147835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42278-FS3_L01.bam	SRR496637	@dbgap@:reads/SRP012006/SRS190170/SRX147835/SRR496637/SRR496637.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNZI_NormalVsPrimary.png	4			
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-11A-01D	DNA	EFO	SRS190170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G06	SRX147835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42278-FS3_L01.bam	SRR496637	@dbgap@:reads/SRP012006/SRS190170/SRX147835/SRR496637/SRR496637.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNZI_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-11A-01D	DNA	EFO	SRS190170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G06	SRX147835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42278-FS3_L01.bam	SRR496637	@dbgap@:reads/SRP012006/SRS190170/SRX147835/SRR496637/SRR496637.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-11A-01D	DNA	EFO	SRS190170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G06	SRX147835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42278-FS3_L01.bam	SRR496637	@dbgap@:reads/SRP012006/SRS190170/SRX147835/SRR496637/SRR496637.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-11A-01D	DNA	EFO	SRS190170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G06	SRX147835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42278-FS3_L01.bam	SRR496637	@dbgap@:reads/SRP012006/SRS190170/SRX147835/SRR496637/SRR496637.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-11A-01D	DNA	EFO	SRS190170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G06	SRX147835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42278-FS3_L01.bam	SRR496637	@dbgap@:reads/SRP012006/SRS190170/SRX147835/SRR496637/SRR496637.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-11A-01D	DNA	EFO	SRS190170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G06	SRX147835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42278-FS3_L01.bam	SRR496637	@dbgap@:reads/SRP012006/SRS190170/SRX147835/SRR496637/SRR496637.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-11A-01D	DNA	EFO	SRS190170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G06	SRX147835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42278-FS3_L01.bam	SRR496637	@dbgap@:reads/SRP012006/SRS190170/SRX147835/SRR496637/SRR496637.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-11A-01D	DNA	EFO	SRS190170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G06	SRX147835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42278-FS3_L01.bam	SRR496637	@dbgap@:reads/SRP012006/SRS190170/SRX147835/SRR496637/SRR496637.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-11A-01D	DNA	EFO	SRS190170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G06	SRX147835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42278-FS3_L01.bam	SRR496637	@dbgap@:reads/SRP012006/SRS190170/SRX147835/SRR496637/SRR496637.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-11A-01D	DNA	EFO	SRS190170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G06	SRX147835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42278-FS3_L01.bam	SRR496637	@dbgap@:reads/SRP012006/SRS190170/SRX147835/SRR496637/SRR496637.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-11A-01D	DNA	EFO	SRS190170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G06	SRX147835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42278-FS3_L01.bam	SRR496637	@dbgap@:reads/SRP012006/SRS190170/SRX147835/SRR496637/SRR496637.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-11A-01D	DNA	EFO	SRS190170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_G06	SRX147835		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZI-11A-01D GS00939-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42278-FS3_L01.bam	SRR496637	@dbgap@:reads/SRP012006/SRS190170/SRX147835/SRR496637/SRR496637.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-01A-01D	DNA	EFO	SRS301289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G08	SRX193174		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51939-FS3_L01.bam	SRR584060	@dbgap@:reads/SRP012006/SRS301289/SRX193174/SRR584060/SRR584060.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNZK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNZK_NormalVsPrimary.png	4			
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-01A-01D	DNA	EFO	SRS301289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G08	SRX193174		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51939-FS3_L01.bam	SRR584060	@dbgap@:reads/SRP012006/SRS301289/SRX193174/SRR584060/SRR584060.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNZK_NormalVsPrimary.png	4			
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-01A-01D	DNA	EFO	SRS301289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G08	SRX193174		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51939-FS3_L01.bam	SRR584060	@dbgap@:reads/SRP012006/SRS301289/SRX193174/SRR584060/SRR584060.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNZK_NormalVsPrimary.png	4			
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-01A-01D	DNA	EFO	SRS301289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G08	SRX193174		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51939-FS3_L01.bam	SRR584060	@dbgap@:reads/SRP012006/SRS301289/SRX193174/SRR584060/SRR584060.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNZK_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-01A-01D	DNA	EFO	SRS301289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G08	SRX193174		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51939-FS3_L01.bam	SRR584060	@dbgap@:reads/SRP012006/SRS301289/SRX193174/SRR584060/SRR584060.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-01A-01D	DNA	EFO	SRS301289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G08	SRX193174		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51939-FS3_L01.bam	SRR584060	@dbgap@:reads/SRP012006/SRS301289/SRX193174/SRR584060/SRR584060.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-01A-01D	DNA	EFO	SRS301289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G08	SRX193174		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51939-FS3_L01.bam	SRR584060	@dbgap@:reads/SRP012006/SRS301289/SRX193174/SRR584060/SRR584060.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-01A-01D	DNA	EFO	SRS301289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G08	SRX193174		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51939-FS3_L01.bam	SRR584060	@dbgap@:reads/SRP012006/SRS301289/SRX193174/SRR584060/SRR584060.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-01A-01D	DNA	EFO	SRS301289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G08	SRX193174		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51939-FS3_L01.bam	SRR584060	@dbgap@:reads/SRP012006/SRS301289/SRX193174/SRR584060/SRR584060.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-01A-01D	DNA	EFO	SRS301289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G08	SRX193174		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51939-FS3_L01.bam	SRR584060	@dbgap@:reads/SRP012006/SRS301289/SRX193174/SRR584060/SRR584060.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-01A-01D	DNA	EFO	SRS301289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G08	SRX193174		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51939-FS3_L01.bam	SRR584060	@dbgap@:reads/SRP012006/SRS301289/SRX193174/SRR584060/SRR584060.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-01A-01D	DNA	EFO	SRS301289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G08	SRX193174		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51939-FS3_L01.bam	SRR584060	@dbgap@:reads/SRP012006/SRS301289/SRX193174/SRR584060/SRR584060.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-01A-01D	DNA	EFO	SRS301289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G08	SRX193174		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51939-FS3_L01.bam	SRR584060	@dbgap@:reads/SRP012006/SRS301289/SRX193174/SRR584060/SRR584060.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-01A-01D	DNA	EFO	SRS301289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G08	SRX193174		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51939-FS3_L01.bam	SRR584060	@dbgap@:reads/SRP012006/SRS301289/SRX193174/SRR584060/SRR584060.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-01A-01D	DNA	EFO	SRS301289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G08	SRX193174		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-01A-01D GS01073-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51939-FS3_L01.bam	SRR584060	@dbgap@:reads/SRP012006/SRS301289/SRX193174/SRR584060/SRR584060.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-11A-01D	DNA	EFO	SRS301290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E11	SRX193173		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51940-FS3_L01.bam	SRR584068	@dbgap@:reads/SRP012006/SRS301290/SRX193173/SRR584068/SRR584068.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNZK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNZK_NormalVsPrimary.png	4			
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-11A-01D	DNA	EFO	SRS301290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E11	SRX193173		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51940-FS3_L01.bam	SRR584068	@dbgap@:reads/SRP012006/SRS301290/SRX193173/SRR584068/SRR584068.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNZK_NormalVsPrimary.png	4			
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-11A-01D	DNA	EFO	SRS301290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E11	SRX193173		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51940-FS3_L01.bam	SRR584068	@dbgap@:reads/SRP012006/SRS301290/SRX193173/SRR584068/SRR584068.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNZK_NormalVsPrimary.png	4			
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-11A-01D	DNA	EFO	SRS301290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E11	SRX193173		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51940-FS3_L01.bam	SRR584068	@dbgap@:reads/SRP012006/SRS301290/SRX193173/SRR584068/SRR584068.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNZK_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-11A-01D	DNA	EFO	SRS301290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E11	SRX193173		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51940-FS3_L01.bam	SRR584068	@dbgap@:reads/SRP012006/SRS301290/SRX193173/SRR584068/SRR584068.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-11A-01D	DNA	EFO	SRS301290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E11	SRX193173		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51940-FS3_L01.bam	SRR584068	@dbgap@:reads/SRP012006/SRS301290/SRX193173/SRR584068/SRR584068.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-11A-01D	DNA	EFO	SRS301290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E11	SRX193173		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51940-FS3_L01.bam	SRR584068	@dbgap@:reads/SRP012006/SRS301290/SRX193173/SRR584068/SRR584068.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-11A-01D	DNA	EFO	SRS301290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E11	SRX193173		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51940-FS3_L01.bam	SRR584068	@dbgap@:reads/SRP012006/SRS301290/SRX193173/SRR584068/SRR584068.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-11A-01D	DNA	EFO	SRS301290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E11	SRX193173		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51940-FS3_L01.bam	SRR584068	@dbgap@:reads/SRP012006/SRS301290/SRX193173/SRR584068/SRR584068.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-11A-01D	DNA	EFO	SRS301290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E11	SRX193173		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51940-FS3_L01.bam	SRR584068	@dbgap@:reads/SRP012006/SRS301290/SRX193173/SRR584068/SRR584068.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-11A-01D	DNA	EFO	SRS301290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E11	SRX193173		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51940-FS3_L01.bam	SRR584068	@dbgap@:reads/SRP012006/SRS301290/SRX193173/SRR584068/SRR584068.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-11A-01D	DNA	EFO	SRS301290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E11	SRX193173		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51940-FS3_L01.bam	SRR584068	@dbgap@:reads/SRP012006/SRS301290/SRX193173/SRR584068/SRR584068.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-11A-01D	DNA	EFO	SRS301290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E11	SRX193173		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51940-FS3_L01.bam	SRR584068	@dbgap@:reads/SRP012006/SRS301290/SRX193173/SRR584068/SRR584068.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-11A-01D	DNA	EFO	SRS301290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E11	SRX193173		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51940-FS3_L01.bam	SRR584068	@dbgap@:reads/SRP012006/SRS301290/SRX193173/SRR584068/SRR584068.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-11A-01D	DNA	EFO	SRS301290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E11	SRX193173		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZK-11A-01D GS01073-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51940-FS3_L01.bam	SRR584068	@dbgap@:reads/SRP012006/SRS301290/SRX193173/SRR584068/SRR584068.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-01A-01D	DNA	EFO	SRS190171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A04	SRX148644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42275-FS3_L01.bam	SRR498196	@dbgap@:reads/SRP012006/SRS190171/SRX148644/SRR498196/SRR498196.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNZS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNZS_NormalVsPrimary.png	4			
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-01A-01D	DNA	EFO	SRS190171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A04	SRX148644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42275-FS3_L01.bam	SRR498196	@dbgap@:reads/SRP012006/SRS190171/SRX148644/SRR498196/SRR498196.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNZS_NormalVsPrimary.png	4			
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-01A-01D	DNA	EFO	SRS190171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A04	SRX148644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42275-FS3_L01.bam	SRR498196	@dbgap@:reads/SRP012006/SRS190171/SRX148644/SRR498196/SRR498196.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNZS_NormalVsPrimary.png	4			
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-01A-01D	DNA	EFO	SRS190171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A04	SRX148644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42275-FS3_L01.bam	SRR498196	@dbgap@:reads/SRP012006/SRS190171/SRX148644/SRR498196/SRR498196.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNZS_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-01A-01D	DNA	EFO	SRS190171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A04	SRX148644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42275-FS3_L01.bam	SRR498196	@dbgap@:reads/SRP012006/SRS190171/SRX148644/SRR498196/SRR498196.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-01A-01D	DNA	EFO	SRS190171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A04	SRX148644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42275-FS3_L01.bam	SRR498196	@dbgap@:reads/SRP012006/SRS190171/SRX148644/SRR498196/SRR498196.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-01A-01D	DNA	EFO	SRS190171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A04	SRX148644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42275-FS3_L01.bam	SRR498196	@dbgap@:reads/SRP012006/SRS190171/SRX148644/SRR498196/SRR498196.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-01A-01D	DNA	EFO	SRS190171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A04	SRX148644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42275-FS3_L01.bam	SRR498196	@dbgap@:reads/SRP012006/SRS190171/SRX148644/SRR498196/SRR498196.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-01A-01D	DNA	EFO	SRS190171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A04	SRX148644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42275-FS3_L01.bam	SRR498196	@dbgap@:reads/SRP012006/SRS190171/SRX148644/SRR498196/SRR498196.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-01A-01D	DNA	EFO	SRS190171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A04	SRX148644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42275-FS3_L01.bam	SRR498196	@dbgap@:reads/SRP012006/SRS190171/SRX148644/SRR498196/SRR498196.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-01A-01D	DNA	EFO	SRS190171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A04	SRX148644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42275-FS3_L01.bam	SRR498196	@dbgap@:reads/SRP012006/SRS190171/SRX148644/SRR498196/SRR498196.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-01A-01D	DNA	EFO	SRS190171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A04	SRX148644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42275-FS3_L01.bam	SRR498196	@dbgap@:reads/SRP012006/SRS190171/SRX148644/SRR498196/SRR498196.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-01A-01D	DNA	EFO	SRS190171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A04	SRX148644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42275-FS3_L01.bam	SRR498196	@dbgap@:reads/SRP012006/SRS190171/SRX148644/SRR498196/SRR498196.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-01A-01D	DNA	EFO	SRS190171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A04	SRX148644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42275-FS3_L01.bam	SRR498196	@dbgap@:reads/SRP012006/SRS190171/SRX148644/SRR498196/SRR498196.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-01A-01D	DNA	EFO	SRS190171	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_A04	SRX148644		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-01A-01D GS00939-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42275-FS3_L01.bam	SRR498196	@dbgap@:reads/SRP012006/SRS190171/SRX148644/SRR498196/SRR498196.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-11A-01D	DNA	EFO	SRS190172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H06	SRX148643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42276-FS3_L01.bam	SRR498204	@dbgap@:reads/SRP012006/SRS190172/SRX148643/SRR498204/SRR498204.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNZS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNZS_NormalVsPrimary.png	4			
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-11A-01D	DNA	EFO	SRS190172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H06	SRX148643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42276-FS3_L01.bam	SRR498204	@dbgap@:reads/SRP012006/SRS190172/SRX148643/SRR498204/SRR498204.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNZS_NormalVsPrimary.png	4			
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-11A-01D	DNA	EFO	SRS190172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H06	SRX148643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42276-FS3_L01.bam	SRR498204	@dbgap@:reads/SRP012006/SRS190172/SRX148643/SRR498204/SRR498204.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNZS_NormalVsPrimary.png	4			
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-11A-01D	DNA	EFO	SRS190172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H06	SRX148643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42276-FS3_L01.bam	SRR498204	@dbgap@:reads/SRP012006/SRS190172/SRX148643/SRR498204/SRR498204.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNZS_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-11A-01D	DNA	EFO	SRS190172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H06	SRX148643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42276-FS3_L01.bam	SRR498204	@dbgap@:reads/SRP012006/SRS190172/SRX148643/SRR498204/SRR498204.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-11A-01D	DNA	EFO	SRS190172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H06	SRX148643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42276-FS3_L01.bam	SRR498204	@dbgap@:reads/SRP012006/SRS190172/SRX148643/SRR498204/SRR498204.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-11A-01D	DNA	EFO	SRS190172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H06	SRX148643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42276-FS3_L01.bam	SRR498204	@dbgap@:reads/SRP012006/SRS190172/SRX148643/SRR498204/SRR498204.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-11A-01D	DNA	EFO	SRS190172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H06	SRX148643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42276-FS3_L01.bam	SRR498204	@dbgap@:reads/SRP012006/SRS190172/SRX148643/SRR498204/SRR498204.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-11A-01D	DNA	EFO	SRS190172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H06	SRX148643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42276-FS3_L01.bam	SRR498204	@dbgap@:reads/SRP012006/SRS190172/SRX148643/SRR498204/SRR498204.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-11A-01D	DNA	EFO	SRS190172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H06	SRX148643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42276-FS3_L01.bam	SRR498204	@dbgap@:reads/SRP012006/SRS190172/SRX148643/SRR498204/SRR498204.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-11A-01D	DNA	EFO	SRS190172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H06	SRX148643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42276-FS3_L01.bam	SRR498204	@dbgap@:reads/SRP012006/SRS190172/SRX148643/SRR498204/SRR498204.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-11A-01D	DNA	EFO	SRS190172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H06	SRX148643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42276-FS3_L01.bam	SRR498204	@dbgap@:reads/SRP012006/SRS190172/SRX148643/SRR498204/SRR498204.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-11A-01D	DNA	EFO	SRS190172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H06	SRX148643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42276-FS3_L01.bam	SRR498204	@dbgap@:reads/SRP012006/SRS190172/SRX148643/SRR498204/SRR498204.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-11A-01D	DNA	EFO	SRS190172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H06	SRX148643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42276-FS3_L01.bam	SRR498204	@dbgap@:reads/SRP012006/SRS190172/SRX148643/SRR498204/SRR498204.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-11A-01D	DNA	EFO	SRS190172	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00939-CLS_H06	SRX148643		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZS-11A-01D GS00939-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42276-FS3_L01.bam	SRR498204	@dbgap@:reads/SRP012006/SRS190172/SRX148643/SRR498204/SRR498204.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-01A-01D	DNA	EFO	SRS301291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H08	SRX209170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52115-FS3_L03.bam	SRR629671	@dbgap@:reads/SRP012006/SRS301291/SRX209170/SRR629671/SRR629671.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNZU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNZU_NormalVsPrimary.png	4			
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-01A-01D	DNA	EFO	SRS301291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H08	SRX209170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52115-FS3_L03.bam	SRR629671	@dbgap@:reads/SRP012006/SRS301291/SRX209170/SRR629671/SRR629671.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNZU_NormalVsPrimary.png	4			
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-01A-01D	DNA	EFO	SRS301291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H08	SRX209170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52115-FS3_L03.bam	SRR629671	@dbgap@:reads/SRP012006/SRS301291/SRX209170/SRR629671/SRR629671.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNZU_NormalVsPrimary.png	4			
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-01A-01D	DNA	EFO	SRS301291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H08	SRX209170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52115-FS3_L03.bam	SRR629671	@dbgap@:reads/SRP012006/SRS301291/SRX209170/SRR629671/SRR629671.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNZU_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-01A-01D	DNA	EFO	SRS301291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H08	SRX209170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52115-FS3_L03.bam	SRR629671	@dbgap@:reads/SRP012006/SRS301291/SRX209170/SRR629671/SRR629671.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-01A-01D	DNA	EFO	SRS301291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H08	SRX209170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52115-FS3_L03.bam	SRR629671	@dbgap@:reads/SRP012006/SRS301291/SRX209170/SRR629671/SRR629671.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-01A-01D	DNA	EFO	SRS301291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H08	SRX209170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52115-FS3_L03.bam	SRR629671	@dbgap@:reads/SRP012006/SRS301291/SRX209170/SRR629671/SRR629671.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-01A-01D	DNA	EFO	SRS301291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H08	SRX209170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52115-FS3_L03.bam	SRR629671	@dbgap@:reads/SRP012006/SRS301291/SRX209170/SRR629671/SRR629671.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-01A-01D	DNA	EFO	SRS301291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H08	SRX209170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52115-FS3_L03.bam	SRR629671	@dbgap@:reads/SRP012006/SRS301291/SRX209170/SRR629671/SRR629671.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-01A-01D	DNA	EFO	SRS301291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H08	SRX209170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52115-FS3_L03.bam	SRR629671	@dbgap@:reads/SRP012006/SRS301291/SRX209170/SRR629671/SRR629671.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-01A-01D	DNA	EFO	SRS301291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H08	SRX209170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52115-FS3_L03.bam	SRR629671	@dbgap@:reads/SRP012006/SRS301291/SRX209170/SRR629671/SRR629671.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-01A-01D	DNA	EFO	SRS301291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H08	SRX209170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52115-FS3_L03.bam	SRR629671	@dbgap@:reads/SRP012006/SRS301291/SRX209170/SRR629671/SRR629671.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-01A-01D	DNA	EFO	SRS301291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H08	SRX209170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52115-FS3_L03.bam	SRR629671	@dbgap@:reads/SRP012006/SRS301291/SRX209170/SRR629671/SRR629671.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-01A-01D	DNA	EFO	SRS301291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H08	SRX209170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52115-FS3_L03.bam	SRR629671	@dbgap@:reads/SRP012006/SRS301291/SRX209170/SRR629671/SRR629671.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-01A-01D	DNA	EFO	SRS301291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H08	SRX209170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-01A-01D GS01073-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52115-FS3_L03.bam	SRR629671	@dbgap@:reads/SRP012006/SRS301291/SRX209170/SRR629671/SRR629671.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-11A-01D	DNA	EFO	SRS301292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F11	SRX209169	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) We see an increase in the number of reference-biased novel SNP calls in repeat regions. These are novel SNP calls in loci where the alt allele frequency is <<0.5 and which are located in repeat regions (e.g. Alu repeats). In other genomes we have observed with this phenomenon, the majority (~75%) of such SNPs are in half-called regions where one allele is no-called. If it would be helpful, we can provide an updated masterVar file where we have converted suspicious calls (located in repeat, alt allele fraction is <<0.5) to our VQLOW VarQuality score. Note again that these SNPs are in repeat regions and calls outside repeats are unlikely to be affected. 4) Statistics measuring the quality of MEI calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52589-FS3_L01.bam	SRR629678	@dbgap@:reads/SRP012006/SRS301292/SRX209169/SRR629678/SRR629678.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJNZU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNZU_NormalVsPrimary.png	4			
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-11A-01D	DNA	EFO	SRS301292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F11	SRX209169	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) We see an increase in the number of reference-biased novel SNP calls in repeat regions. These are novel SNP calls in loci where the alt allele frequency is <<0.5 and which are located in repeat regions (e.g. Alu repeats). In other genomes we have observed with this phenomenon, the majority (~75%) of such SNPs are in half-called regions where one allele is no-called. If it would be helpful, we can provide an updated masterVar file where we have converted suspicious calls (located in repeat, alt allele fraction is <<0.5) to our VQLOW VarQuality score. Note again that these SNPs are in repeat regions and calls outside repeats are unlikely to be affected. 4) Statistics measuring the quality of MEI calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52589-FS3_L01.bam	SRR629678	@dbgap@:reads/SRP012006/SRS301292/SRX209169/SRR629678/SRR629678.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNZU_NormalVsPrimary.png	4			
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-11A-01D	DNA	EFO	SRS301292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F11	SRX209169	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) We see an increase in the number of reference-biased novel SNP calls in repeat regions. These are novel SNP calls in loci where the alt allele frequency is <<0.5 and which are located in repeat regions (e.g. Alu repeats). In other genomes we have observed with this phenomenon, the majority (~75%) of such SNPs are in half-called regions where one allele is no-called. If it would be helpful, we can provide an updated masterVar file where we have converted suspicious calls (located in repeat, alt allele fraction is <<0.5) to our VQLOW VarQuality score. Note again that these SNPs are in repeat regions and calls outside repeats are unlikely to be affected. 4) Statistics measuring the quality of MEI calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52589-FS3_L01.bam	SRR629678	@dbgap@:reads/SRP012006/SRS301292/SRX209169/SRR629678/SRR629678.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJNZU_NormalVsPrimary.png	4			
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-11A-01D	DNA	EFO	SRS301292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F11	SRX209169	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) We see an increase in the number of reference-biased novel SNP calls in repeat regions. These are novel SNP calls in loci where the alt allele frequency is <<0.5 and which are located in repeat regions (e.g. Alu repeats). In other genomes we have observed with this phenomenon, the majority (~75%) of such SNPs are in half-called regions where one allele is no-called. If it would be helpful, we can provide an updated masterVar file where we have converted suspicious calls (located in repeat, alt allele fraction is <<0.5) to our VQLOW VarQuality score. Note again that these SNPs are in repeat regions and calls outside repeats are unlikely to be affected. 4) Statistics measuring the quality of MEI calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52589-FS3_L01.bam	SRR629678	@dbgap@:reads/SRP012006/SRS301292/SRX209169/SRR629678/SRR629678.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJNZU_NormalVsPrimary.maf.txt	3
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-11A-01D	DNA	EFO	SRS301292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F11	SRX209169	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) We see an increase in the number of reference-biased novel SNP calls in repeat regions. These are novel SNP calls in loci where the alt allele frequency is <<0.5 and which are located in repeat regions (e.g. Alu repeats). In other genomes we have observed with this phenomenon, the majority (~75%) of such SNPs are in half-called regions where one allele is no-called. If it would be helpful, we can provide an updated masterVar file where we have converted suspicious calls (located in repeat, alt allele fraction is <<0.5) to our VQLOW VarQuality score. Note again that these SNPs are in repeat regions and calls outside repeats are unlikely to be affected. 4) Statistics measuring the quality of MEI calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52589-FS3_L01.bam	SRR629678	@dbgap@:reads/SRP012006/SRS301292/SRX209169/SRR629678/SRR629678.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-11A-01D	DNA	EFO	SRS301292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F11	SRX209169	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) We see an increase in the number of reference-biased novel SNP calls in repeat regions. These are novel SNP calls in loci where the alt allele frequency is <<0.5 and which are located in repeat regions (e.g. Alu repeats). In other genomes we have observed with this phenomenon, the majority (~75%) of such SNPs are in half-called regions where one allele is no-called. If it would be helpful, we can provide an updated masterVar file where we have converted suspicious calls (located in repeat, alt allele fraction is <<0.5) to our VQLOW VarQuality score. Note again that these SNPs are in repeat regions and calls outside repeats are unlikely to be affected. 4) Statistics measuring the quality of MEI calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52589-FS3_L01.bam	SRR629678	@dbgap@:reads/SRP012006/SRS301292/SRX209169/SRR629678/SRR629678.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-11A-01D	DNA	EFO	SRS301292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F11	SRX209169	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) We see an increase in the number of reference-biased novel SNP calls in repeat regions. These are novel SNP calls in loci where the alt allele frequency is <<0.5 and which are located in repeat regions (e.g. Alu repeats). In other genomes we have observed with this phenomenon, the majority (~75%) of such SNPs are in half-called regions where one allele is no-called. If it would be helpful, we can provide an updated masterVar file where we have converted suspicious calls (located in repeat, alt allele fraction is <<0.5) to our VQLOW VarQuality score. Note again that these SNPs are in repeat regions and calls outside repeats are unlikely to be affected. 4) Statistics measuring the quality of MEI calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52589-FS3_L01.bam	SRR629678	@dbgap@:reads/SRP012006/SRS301292/SRX209169/SRR629678/SRR629678.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-11A-01D	DNA	EFO	SRS301292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F11	SRX209169	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) We see an increase in the number of reference-biased novel SNP calls in repeat regions. These are novel SNP calls in loci where the alt allele frequency is <<0.5 and which are located in repeat regions (e.g. Alu repeats). In other genomes we have observed with this phenomenon, the majority (~75%) of such SNPs are in half-called regions where one allele is no-called. If it would be helpful, we can provide an updated masterVar file where we have converted suspicious calls (located in repeat, alt allele fraction is <<0.5) to our VQLOW VarQuality score. Note again that these SNPs are in repeat regions and calls outside repeats are unlikely to be affected. 4) Statistics measuring the quality of MEI calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52589-FS3_L01.bam	SRR629678	@dbgap@:reads/SRP012006/SRS301292/SRX209169/SRR629678/SRR629678.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-11A-01D	DNA	EFO	SRS301292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F11	SRX209169	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) We see an increase in the number of reference-biased novel SNP calls in repeat regions. These are novel SNP calls in loci where the alt allele frequency is <<0.5 and which are located in repeat regions (e.g. Alu repeats). In other genomes we have observed with this phenomenon, the majority (~75%) of such SNPs are in half-called regions where one allele is no-called. If it would be helpful, we can provide an updated masterVar file where we have converted suspicious calls (located in repeat, alt allele fraction is <<0.5) to our VQLOW VarQuality score. Note again that these SNPs are in repeat regions and calls outside repeats are unlikely to be affected. 4) Statistics measuring the quality of MEI calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52589-FS3_L01.bam	SRR629678	@dbgap@:reads/SRP012006/SRS301292/SRX209169/SRR629678/SRR629678.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-11A-01D	DNA	EFO	SRS301292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F11	SRX209169	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) We see an increase in the number of reference-biased novel SNP calls in repeat regions. These are novel SNP calls in loci where the alt allele frequency is <<0.5 and which are located in repeat regions (e.g. Alu repeats). In other genomes we have observed with this phenomenon, the majority (~75%) of such SNPs are in half-called regions where one allele is no-called. If it would be helpful, we can provide an updated masterVar file where we have converted suspicious calls (located in repeat, alt allele fraction is <<0.5) to our VQLOW VarQuality score. Note again that these SNPs are in repeat regions and calls outside repeats are unlikely to be affected. 4) Statistics measuring the quality of MEI calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52589-FS3_L01.bam	SRR629678	@dbgap@:reads/SRP012006/SRS301292/SRX209169/SRR629678/SRR629678.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-11A-01D	DNA	EFO	SRS301292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F11	SRX209169	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) We see an increase in the number of reference-biased novel SNP calls in repeat regions. These are novel SNP calls in loci where the alt allele frequency is <<0.5 and which are located in repeat regions (e.g. Alu repeats). In other genomes we have observed with this phenomenon, the majority (~75%) of such SNPs are in half-called regions where one allele is no-called. If it would be helpful, we can provide an updated masterVar file where we have converted suspicious calls (located in repeat, alt allele fraction is <<0.5) to our VQLOW VarQuality score. Note again that these SNPs are in repeat regions and calls outside repeats are unlikely to be affected. 4) Statistics measuring the quality of MEI calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52589-FS3_L01.bam	SRR629678	@dbgap@:reads/SRP012006/SRS301292/SRX209169/SRR629678/SRR629678.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-11A-01D	DNA	EFO	SRS301292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F11	SRX209169	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) We see an increase in the number of reference-biased novel SNP calls in repeat regions. These are novel SNP calls in loci where the alt allele frequency is <<0.5 and which are located in repeat regions (e.g. Alu repeats). In other genomes we have observed with this phenomenon, the majority (~75%) of such SNPs are in half-called regions where one allele is no-called. If it would be helpful, we can provide an updated masterVar file where we have converted suspicious calls (located in repeat, alt allele fraction is <<0.5) to our VQLOW VarQuality score. Note again that these SNPs are in repeat regions and calls outside repeats are unlikely to be affected. 4) Statistics measuring the quality of MEI calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52589-FS3_L01.bam	SRR629678	@dbgap@:reads/SRP012006/SRS301292/SRX209169/SRR629678/SRR629678.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJNZU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJNZU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-11A-01D	DNA	EFO	SRS301292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F11	SRX209169	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) We see an increase in the number of reference-biased novel SNP calls in repeat regions. These are novel SNP calls in loci where the alt allele frequency is <<0.5 and which are located in repeat regions (e.g. Alu repeats). In other genomes we have observed with this phenomenon, the majority (~75%) of such SNPs are in half-called regions where one allele is no-called. If it would be helpful, we can provide an updated masterVar file where we have converted suspicious calls (located in repeat, alt allele fraction is <<0.5) to our VQLOW VarQuality score. Note again that these SNPs are in repeat regions and calls outside repeats are unlikely to be affected. 4) Statistics measuring the quality of MEI calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52589-FS3_L01.bam	SRR629678	@dbgap@:reads/SRP012006/SRS301292/SRX209169/SRR629678/SRR629678.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-11A-01D	DNA	EFO	SRS301292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F11	SRX209169	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) We see an increase in the number of reference-biased novel SNP calls in repeat regions. These are novel SNP calls in loci where the alt allele frequency is <<0.5 and which are located in repeat regions (e.g. Alu repeats). In other genomes we have observed with this phenomenon, the majority (~75%) of such SNPs are in half-called regions where one allele is no-called. If it would be helpful, we can provide an updated masterVar file where we have converted suspicious calls (located in repeat, alt allele fraction is <<0.5) to our VQLOW VarQuality score. Note again that these SNPs are in repeat regions and calls outside repeats are unlikely to be affected. 4) Statistics measuring the quality of MEI calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52589-FS3_L01.bam	SRR629678	@dbgap@:reads/SRP012006/SRS301292/SRX209169/SRR629678/SRR629678.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-11A-01D	DNA	EFO	SRS301292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F11	SRX209169	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) We see an increase in the number of reference-biased novel SNP calls in repeat regions. These are novel SNP calls in loci where the alt allele frequency is <<0.5 and which are located in repeat regions (e.g. Alu repeats). In other genomes we have observed with this phenomenon, the majority (~75%) of such SNPs are in half-called regions where one allele is no-called. If it would be helpful, we can provide an updated masterVar file where we have converted suspicious calls (located in repeat, alt allele fraction is <<0.5) to our VQLOW VarQuality score. Note again that these SNPs are in repeat regions and calls outside repeats are unlikely to be affected. 4) Statistics measuring the quality of MEI calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJNZU-11A-01D GS01073-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52589-FS3_L01.bam	SRR629678	@dbgap@:reads/SRP012006/SRS301292/SRX209169/SRR629678/SRR629678.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01D	DNA	EFO	SRS190173	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B01	SRX147843		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43548-FS3_L01.bam	SRR496683	@dbgap@:reads/SRP012006/SRS190173/SRX147843/SRR496683/SRR496683.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJPAR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPAR_NormalVsPrimary.png	4			
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01D	DNA	EFO	SRS190173	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B01	SRX147843		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43548-FS3_L01.bam	SRR496683	@dbgap@:reads/SRP012006/SRS190173/SRX147843/SRR496683/SRR496683.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPAR_NormalVsPrimary.png	4			
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01D	DNA	EFO	SRS190173	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B01	SRX147843		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43548-FS3_L01.bam	SRR496683	@dbgap@:reads/SRP012006/SRS190173/SRX147843/SRR496683/SRR496683.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPAR_NormalVsPrimary.png	4			
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01D	DNA	EFO	SRS190173	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B01	SRX147843		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43548-FS3_L01.bam	SRR496683	@dbgap@:reads/SRP012006/SRS190173/SRX147843/SRR496683/SRR496683.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJPAR_NormalVsPrimary.maf.txt	3
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01D	DNA	EFO	SRS190173	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B01	SRX147843		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43548-FS3_L01.bam	SRR496683	@dbgap@:reads/SRP012006/SRS190173/SRX147843/SRR496683/SRR496683.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01D	DNA	EFO	SRS190173	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B01	SRX147843		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43548-FS3_L01.bam	SRR496683	@dbgap@:reads/SRP012006/SRS190173/SRX147843/SRR496683/SRR496683.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01D	DNA	EFO	SRS190173	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B01	SRX147843		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43548-FS3_L01.bam	SRR496683	@dbgap@:reads/SRP012006/SRS190173/SRX147843/SRR496683/SRR496683.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01D	DNA	EFO	SRS190173	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B01	SRX147843		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43548-FS3_L01.bam	SRR496683	@dbgap@:reads/SRP012006/SRS190173/SRX147843/SRR496683/SRR496683.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01D	DNA	EFO	SRS190173	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B01	SRX147843		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43548-FS3_L01.bam	SRR496683	@dbgap@:reads/SRP012006/SRS190173/SRX147843/SRR496683/SRR496683.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01D	DNA	EFO	SRS190173	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B01	SRX147843		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43548-FS3_L01.bam	SRR496683	@dbgap@:reads/SRP012006/SRS190173/SRX147843/SRR496683/SRR496683.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01D	DNA	EFO	SRS190173	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B01	SRX147843		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43548-FS3_L01.bam	SRR496683	@dbgap@:reads/SRP012006/SRS190173/SRX147843/SRR496683/SRR496683.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01D	DNA	EFO	SRS190173	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B01	SRX147843		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43548-FS3_L01.bam	SRR496683	@dbgap@:reads/SRP012006/SRS190173/SRX147843/SRR496683/SRR496683.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01D	DNA	EFO	SRS190173	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B01	SRX147843		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43548-FS3_L01.bam	SRR496683	@dbgap@:reads/SRP012006/SRS190173/SRX147843/SRR496683/SRR496683.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01D	DNA	EFO	SRS190173	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B01	SRX147843		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43548-FS3_L01.bam	SRR496683	@dbgap@:reads/SRP012006/SRS190173/SRX147843/SRR496683/SRR496683.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01D	DNA	EFO	SRS190173	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B01	SRX147843		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-01A-01D GS00941-CLS_B01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43548-FS3_L01.bam	SRR496683	@dbgap@:reads/SRP012006/SRS190173/SRX147843/SRR496683/SRR496683.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-11A-01D	DNA	EFO	SRS190174	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A03	SRX147842		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42274-FS3_L01.bam	SRR496691	@dbgap@:reads/SRP012006/SRS190174/SRX147842/SRR496691/SRR496691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJPAR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPAR_NormalVsPrimary.png	4			
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-11A-01D	DNA	EFO	SRS190174	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A03	SRX147842		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42274-FS3_L01.bam	SRR496691	@dbgap@:reads/SRP012006/SRS190174/SRX147842/SRR496691/SRR496691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPAR_NormalVsPrimary.png	4			
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-11A-01D	DNA	EFO	SRS190174	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A03	SRX147842		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42274-FS3_L01.bam	SRR496691	@dbgap@:reads/SRP012006/SRS190174/SRX147842/SRR496691/SRR496691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPAR_NormalVsPrimary.png	4			
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-11A-01D	DNA	EFO	SRS190174	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A03	SRX147842		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42274-FS3_L01.bam	SRR496691	@dbgap@:reads/SRP012006/SRS190174/SRX147842/SRR496691/SRR496691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJPAR_NormalVsPrimary.maf.txt	3
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-11A-01D	DNA	EFO	SRS190174	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A03	SRX147842		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42274-FS3_L01.bam	SRR496691	@dbgap@:reads/SRP012006/SRS190174/SRX147842/SRR496691/SRR496691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-11A-01D	DNA	EFO	SRS190174	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A03	SRX147842		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42274-FS3_L01.bam	SRR496691	@dbgap@:reads/SRP012006/SRS190174/SRX147842/SRR496691/SRR496691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-11A-01D	DNA	EFO	SRS190174	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A03	SRX147842		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42274-FS3_L01.bam	SRR496691	@dbgap@:reads/SRP012006/SRS190174/SRX147842/SRR496691/SRR496691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-11A-01D	DNA	EFO	SRS190174	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A03	SRX147842		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42274-FS3_L01.bam	SRR496691	@dbgap@:reads/SRP012006/SRS190174/SRX147842/SRR496691/SRR496691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-11A-01D	DNA	EFO	SRS190174	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A03	SRX147842		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42274-FS3_L01.bam	SRR496691	@dbgap@:reads/SRP012006/SRS190174/SRX147842/SRR496691/SRR496691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-11A-01D	DNA	EFO	SRS190174	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A03	SRX147842		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42274-FS3_L01.bam	SRR496691	@dbgap@:reads/SRP012006/SRS190174/SRX147842/SRR496691/SRR496691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-11A-01D	DNA	EFO	SRS190174	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A03	SRX147842		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42274-FS3_L01.bam	SRR496691	@dbgap@:reads/SRP012006/SRS190174/SRX147842/SRR496691/SRR496691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-11A-01D	DNA	EFO	SRS190174	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A03	SRX147842		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42274-FS3_L01.bam	SRR496691	@dbgap@:reads/SRP012006/SRS190174/SRX147842/SRR496691/SRR496691.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-11A-01D	DNA	EFO	SRS190174	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A03	SRX147842		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42274-FS3_L01.bam	SRR496691	@dbgap@:reads/SRP012006/SRS190174/SRX147842/SRR496691/SRR496691.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-11A-01D	DNA	EFO	SRS190174	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A03	SRX147842		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42274-FS3_L01.bam	SRR496691	@dbgap@:reads/SRP012006/SRS190174/SRX147842/SRR496691/SRR496691.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-11A-01D	DNA	EFO	SRS190174	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A03	SRX147842		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAR-11A-01D GS00941-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42274-FS3_L01.bam	SRR496691	@dbgap@:reads/SRP012006/SRS190174/SRX147842/SRR496691/SRR496691.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-01A-01D	DNA	EFO	SRS377449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F05	SRX206825		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56006-FS3_L01.bam	SRR621078	@dbgap@:reads/SRP012006/SRS377449/SRX206825/SRR621078/SRR621078.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJPAU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPAU_NormalVsPrimary.png	4			
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-01A-01D	DNA	EFO	SRS377449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F05	SRX206825		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56006-FS3_L01.bam	SRR621078	@dbgap@:reads/SRP012006/SRS377449/SRX206825/SRR621078/SRR621078.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPAU_NormalVsPrimary.png	4			
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-01A-01D	DNA	EFO	SRS377449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F05	SRX206825		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56006-FS3_L01.bam	SRR621078	@dbgap@:reads/SRP012006/SRS377449/SRX206825/SRR621078/SRR621078.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPAU_NormalVsPrimary.png	4			
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-01A-01D	DNA	EFO	SRS377449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F05	SRX206825		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56006-FS3_L01.bam	SRR621078	@dbgap@:reads/SRP012006/SRS377449/SRX206825/SRR621078/SRR621078.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJPAU_NormalVsPrimary.maf.txt	3
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-01A-01D	DNA	EFO	SRS377449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F05	SRX206825		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56006-FS3_L01.bam	SRR621078	@dbgap@:reads/SRP012006/SRS377449/SRX206825/SRR621078/SRR621078.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-01A-01D	DNA	EFO	SRS377449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F05	SRX206825		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56006-FS3_L01.bam	SRR621078	@dbgap@:reads/SRP012006/SRS377449/SRX206825/SRR621078/SRR621078.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-01A-01D	DNA	EFO	SRS377449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F05	SRX206825		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56006-FS3_L01.bam	SRR621078	@dbgap@:reads/SRP012006/SRS377449/SRX206825/SRR621078/SRR621078.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-01A-01D	DNA	EFO	SRS377449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F05	SRX206825		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56006-FS3_L01.bam	SRR621078	@dbgap@:reads/SRP012006/SRS377449/SRX206825/SRR621078/SRR621078.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-01A-01D	DNA	EFO	SRS377449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F05	SRX206825		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56006-FS3_L01.bam	SRR621078	@dbgap@:reads/SRP012006/SRS377449/SRX206825/SRR621078/SRR621078.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-01A-01D	DNA	EFO	SRS377449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F05	SRX206825		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56006-FS3_L01.bam	SRR621078	@dbgap@:reads/SRP012006/SRS377449/SRX206825/SRR621078/SRR621078.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-01A-01D	DNA	EFO	SRS377449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F05	SRX206825		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56006-FS3_L01.bam	SRR621078	@dbgap@:reads/SRP012006/SRS377449/SRX206825/SRR621078/SRR621078.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-01A-01D	DNA	EFO	SRS377449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F05	SRX206825		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56006-FS3_L01.bam	SRR621078	@dbgap@:reads/SRP012006/SRS377449/SRX206825/SRR621078/SRR621078.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-01A-01D	DNA	EFO	SRS377449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F05	SRX206825		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56006-FS3_L01.bam	SRR621078	@dbgap@:reads/SRP012006/SRS377449/SRX206825/SRR621078/SRR621078.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-01A-01D	DNA	EFO	SRS377449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F05	SRX206825		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56006-FS3_L01.bam	SRR621078	@dbgap@:reads/SRP012006/SRS377449/SRX206825/SRR621078/SRR621078.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-01A-01D	DNA	EFO	SRS377449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F05	SRX206825		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-01A-01D GS01103-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56006-FS3_L01.bam	SRR621078	@dbgap@:reads/SRP012006/SRS377449/SRX206825/SRR621078/SRR621078.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-10A-01D	DNA	EFO	SRS377450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_F02	SRX206824		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55998-FS3_L01.bam	SRR621085	@dbgap@:reads/SRP012006/SRS377450/SRX206824/SRR621085/SRR621085.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJPAU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPAU_NormalVsPrimary.png	4			
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-10A-01D	DNA	EFO	SRS377450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_F02	SRX206824		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55998-FS3_L01.bam	SRR621085	@dbgap@:reads/SRP012006/SRS377450/SRX206824/SRR621085/SRR621085.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPAU_NormalVsPrimary.png	4			
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-10A-01D	DNA	EFO	SRS377450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_F02	SRX206824		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55998-FS3_L01.bam	SRR621085	@dbgap@:reads/SRP012006/SRS377450/SRX206824/SRR621085/SRR621085.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPAU_NormalVsPrimary.png	4			
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-10A-01D	DNA	EFO	SRS377450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_F02	SRX206824		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55998-FS3_L01.bam	SRR621085	@dbgap@:reads/SRP012006/SRS377450/SRX206824/SRR621085/SRR621085.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJPAU_NormalVsPrimary.maf.txt	3
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-10A-01D	DNA	EFO	SRS377450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_F02	SRX206824		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55998-FS3_L01.bam	SRR621085	@dbgap@:reads/SRP012006/SRS377450/SRX206824/SRR621085/SRR621085.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-10A-01D	DNA	EFO	SRS377450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_F02	SRX206824		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55998-FS3_L01.bam	SRR621085	@dbgap@:reads/SRP012006/SRS377450/SRX206824/SRR621085/SRR621085.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-10A-01D	DNA	EFO	SRS377450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_F02	SRX206824		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55998-FS3_L01.bam	SRR621085	@dbgap@:reads/SRP012006/SRS377450/SRX206824/SRR621085/SRR621085.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-10A-01D	DNA	EFO	SRS377450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_F02	SRX206824		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55998-FS3_L01.bam	SRR621085	@dbgap@:reads/SRP012006/SRS377450/SRX206824/SRR621085/SRR621085.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-10A-01D	DNA	EFO	SRS377450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_F02	SRX206824		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55998-FS3_L01.bam	SRR621085	@dbgap@:reads/SRP012006/SRS377450/SRX206824/SRR621085/SRR621085.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-10A-01D	DNA	EFO	SRS377450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_F02	SRX206824		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55998-FS3_L01.bam	SRR621085	@dbgap@:reads/SRP012006/SRS377450/SRX206824/SRR621085/SRR621085.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-10A-01D	DNA	EFO	SRS377450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_F02	SRX206824		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55998-FS3_L01.bam	SRR621085	@dbgap@:reads/SRP012006/SRS377450/SRX206824/SRR621085/SRR621085.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-10A-01D	DNA	EFO	SRS377450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_F02	SRX206824		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55998-FS3_L01.bam	SRR621085	@dbgap@:reads/SRP012006/SRS377450/SRX206824/SRR621085/SRR621085.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPAU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPAU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-10A-01D	DNA	EFO	SRS377450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_F02	SRX206824		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55998-FS3_L01.bam	SRR621085	@dbgap@:reads/SRP012006/SRS377450/SRX206824/SRR621085/SRR621085.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-10A-01D	DNA	EFO	SRS377450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_F02	SRX206824		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55998-FS3_L01.bam	SRR621085	@dbgap@:reads/SRP012006/SRS377450/SRX206824/SRR621085/SRR621085.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-10A-01D	DNA	EFO	SRS377450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_F02	SRX206824		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPAU-10A-01D GS01114-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55998-FS3_L01.bam	SRR621085	@dbgap@:reads/SRP012006/SRS377450/SRX206824/SRR621085/SRR621085.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-01A-01D	DNA	EFO	SRS301295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A09	SRX202107		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52339-FS3_L01.bam	SRR610182	@dbgap@:reads/SRP012006/SRS301295/SRX202107/SRR610182/SRR610182.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJPEW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPEW_NormalVsPrimary.png	4			
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-01A-01D	DNA	EFO	SRS301295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A09	SRX202107		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52339-FS3_L01.bam	SRR610182	@dbgap@:reads/SRP012006/SRS301295/SRX202107/SRR610182/SRR610182.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPEW_NormalVsPrimary.png	4			
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-01A-01D	DNA	EFO	SRS301295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A09	SRX202107		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52339-FS3_L01.bam	SRR610182	@dbgap@:reads/SRP012006/SRS301295/SRX202107/SRR610182/SRR610182.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPEW_NormalVsPrimary.png	4			
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-01A-01D	DNA	EFO	SRS301295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A09	SRX202107		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52339-FS3_L01.bam	SRR610182	@dbgap@:reads/SRP012006/SRS301295/SRX202107/SRR610182/SRR610182.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJPEW_NormalVsPrimary.maf.txt	3
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-01A-01D	DNA	EFO	SRS301295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A09	SRX202107		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52339-FS3_L01.bam	SRR610182	@dbgap@:reads/SRP012006/SRS301295/SRX202107/SRR610182/SRR610182.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-01A-01D	DNA	EFO	SRS301295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A09	SRX202107		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52339-FS3_L01.bam	SRR610182	@dbgap@:reads/SRP012006/SRS301295/SRX202107/SRR610182/SRR610182.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-01A-01D	DNA	EFO	SRS301295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A09	SRX202107		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52339-FS3_L01.bam	SRR610182	@dbgap@:reads/SRP012006/SRS301295/SRX202107/SRR610182/SRR610182.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-01A-01D	DNA	EFO	SRS301295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A09	SRX202107		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52339-FS3_L01.bam	SRR610182	@dbgap@:reads/SRP012006/SRS301295/SRX202107/SRR610182/SRR610182.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-01A-01D	DNA	EFO	SRS301295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A09	SRX202107		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52339-FS3_L01.bam	SRR610182	@dbgap@:reads/SRP012006/SRS301295/SRX202107/SRR610182/SRR610182.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-01A-01D	DNA	EFO	SRS301295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A09	SRX202107		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52339-FS3_L01.bam	SRR610182	@dbgap@:reads/SRP012006/SRS301295/SRX202107/SRR610182/SRR610182.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-01A-01D	DNA	EFO	SRS301295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A09	SRX202107		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52339-FS3_L01.bam	SRR610182	@dbgap@:reads/SRP012006/SRS301295/SRX202107/SRR610182/SRR610182.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-01A-01D	DNA	EFO	SRS301295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A09	SRX202107		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52339-FS3_L01.bam	SRR610182	@dbgap@:reads/SRP012006/SRS301295/SRX202107/SRR610182/SRR610182.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-01A-01D	DNA	EFO	SRS301295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A09	SRX202107		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52339-FS3_L01.bam	SRR610182	@dbgap@:reads/SRP012006/SRS301295/SRX202107/SRR610182/SRR610182.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-01A-01D	DNA	EFO	SRS301295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A09	SRX202107		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52339-FS3_L01.bam	SRR610182	@dbgap@:reads/SRP012006/SRS301295/SRX202107/SRR610182/SRR610182.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-01A-01D	DNA	EFO	SRS301295	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A09	SRX202107		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-01A-01D GS01073-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52339-FS3_L01.bam	SRR610182	@dbgap@:reads/SRP012006/SRS301295/SRX202107/SRR610182/SRR610182.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-11A-01D	DNA	EFO	SRS373605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G11	SRX202106		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52116-FS3_L01.bam	SRR610190	@dbgap@:reads/SRP012006/SRS373605/SRX202106/SRR610190/SRR610190.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJPEW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPEW_NormalVsPrimary.png	4			
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-11A-01D	DNA	EFO	SRS373605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G11	SRX202106		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52116-FS3_L01.bam	SRR610190	@dbgap@:reads/SRP012006/SRS373605/SRX202106/SRR610190/SRR610190.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPEW_NormalVsPrimary.png	4			
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-11A-01D	DNA	EFO	SRS373605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G11	SRX202106		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52116-FS3_L01.bam	SRR610190	@dbgap@:reads/SRP012006/SRS373605/SRX202106/SRR610190/SRR610190.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPEW_NormalVsPrimary.png	4			
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-11A-01D	DNA	EFO	SRS373605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G11	SRX202106		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52116-FS3_L01.bam	SRR610190	@dbgap@:reads/SRP012006/SRS373605/SRX202106/SRR610190/SRR610190.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJPEW_NormalVsPrimary.maf.txt	3
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-11A-01D	DNA	EFO	SRS373605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G11	SRX202106		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52116-FS3_L01.bam	SRR610190	@dbgap@:reads/SRP012006/SRS373605/SRX202106/SRR610190/SRR610190.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-11A-01D	DNA	EFO	SRS373605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G11	SRX202106		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52116-FS3_L01.bam	SRR610190	@dbgap@:reads/SRP012006/SRS373605/SRX202106/SRR610190/SRR610190.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-11A-01D	DNA	EFO	SRS373605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G11	SRX202106		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52116-FS3_L01.bam	SRR610190	@dbgap@:reads/SRP012006/SRS373605/SRX202106/SRR610190/SRR610190.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-11A-01D	DNA	EFO	SRS373605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G11	SRX202106		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52116-FS3_L01.bam	SRR610190	@dbgap@:reads/SRP012006/SRS373605/SRX202106/SRR610190/SRR610190.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-11A-01D	DNA	EFO	SRS373605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G11	SRX202106		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52116-FS3_L01.bam	SRR610190	@dbgap@:reads/SRP012006/SRS373605/SRX202106/SRR610190/SRR610190.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-11A-01D	DNA	EFO	SRS373605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G11	SRX202106		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52116-FS3_L01.bam	SRR610190	@dbgap@:reads/SRP012006/SRS373605/SRX202106/SRR610190/SRR610190.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-11A-01D	DNA	EFO	SRS373605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G11	SRX202106		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52116-FS3_L01.bam	SRR610190	@dbgap@:reads/SRP012006/SRS373605/SRX202106/SRR610190/SRR610190.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-11A-01D	DNA	EFO	SRS373605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G11	SRX202106		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52116-FS3_L01.bam	SRR610190	@dbgap@:reads/SRP012006/SRS373605/SRX202106/SRR610190/SRR610190.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPEW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPEW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-11A-01D	DNA	EFO	SRS373605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G11	SRX202106		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52116-FS3_L01.bam	SRR610190	@dbgap@:reads/SRP012006/SRS373605/SRX202106/SRR610190/SRR610190.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-11A-01D	DNA	EFO	SRS373605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G11	SRX202106		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52116-FS3_L01.bam	SRR610190	@dbgap@:reads/SRP012006/SRS373605/SRX202106/SRR610190/SRR610190.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-11A-01D	DNA	EFO	SRS373605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G11	SRX202106		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPEW-11A-01D GS01073-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52116-FS3_L01.bam	SRR610190	@dbgap@:reads/SRP012006/SRS373605/SRX202106/SRR610190/SRR610190.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-01A-01D	DNA	EFO	SRS287616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F09	SRX149687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44533-FS3_L01.bam	SRR500997	@dbgap@:reads/SRP012006/SRS287616/SRX149687/SRR500997/SRR500997.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJPGY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPGY_NormalVsPrimary.png	4			
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-01A-01D	DNA	EFO	SRS287616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F09	SRX149687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44533-FS3_L01.bam	SRR500997	@dbgap@:reads/SRP012006/SRS287616/SRX149687/SRR500997/SRR500997.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPGY_NormalVsPrimary.png	4			
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-01A-01D	DNA	EFO	SRS287616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F09	SRX149687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44533-FS3_L01.bam	SRR500997	@dbgap@:reads/SRP012006/SRS287616/SRX149687/SRR500997/SRR500997.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPGY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPGY_NormalVsPrimary.png	4			
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-01A-01D	DNA	EFO	SRS287616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F09	SRX149687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44533-FS3_L01.bam	SRR500997	@dbgap@:reads/SRP012006/SRS287616/SRX149687/SRR500997/SRR500997.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPGY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPGY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJPGY_NormalVsPrimary.maf.txt	3
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-01A-01D	DNA	EFO	SRS287616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F09	SRX149687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44533-FS3_L01.bam	SRR500997	@dbgap@:reads/SRP012006/SRS287616/SRX149687/SRR500997/SRR500997.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPGY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPGY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-01A-01D	DNA	EFO	SRS287616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F09	SRX149687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44533-FS3_L01.bam	SRR500997	@dbgap@:reads/SRP012006/SRS287616/SRX149687/SRR500997/SRR500997.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPGY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPGY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-01A-01D	DNA	EFO	SRS287616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F09	SRX149687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44533-FS3_L01.bam	SRR500997	@dbgap@:reads/SRP012006/SRS287616/SRX149687/SRR500997/SRR500997.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPGY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPGY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-01A-01D	DNA	EFO	SRS287616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F09	SRX149687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44533-FS3_L01.bam	SRR500997	@dbgap@:reads/SRP012006/SRS287616/SRX149687/SRR500997/SRR500997.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPGY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPGY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-01A-01D	DNA	EFO	SRS287616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F09	SRX149687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44533-FS3_L01.bam	SRR500997	@dbgap@:reads/SRP012006/SRS287616/SRX149687/SRR500997/SRR500997.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPGY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPGY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-01A-01D	DNA	EFO	SRS287616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F09	SRX149687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44533-FS3_L01.bam	SRR500997	@dbgap@:reads/SRP012006/SRS287616/SRX149687/SRR500997/SRR500997.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPGY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPGY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-01A-01D	DNA	EFO	SRS287616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F09	SRX149687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44533-FS3_L01.bam	SRR500997	@dbgap@:reads/SRP012006/SRS287616/SRX149687/SRR500997/SRR500997.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPGY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPGY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-01A-01D	DNA	EFO	SRS287616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F09	SRX149687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44533-FS3_L01.bam	SRR500997	@dbgap@:reads/SRP012006/SRS287616/SRX149687/SRR500997/SRR500997.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPGY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPGY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-01A-01D	DNA	EFO	SRS287616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F09	SRX149687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44533-FS3_L01.bam	SRR500997	@dbgap@:reads/SRP012006/SRS287616/SRX149687/SRR500997/SRR500997.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-01A-01D	DNA	EFO	SRS287616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F09	SRX149687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44533-FS3_L01.bam	SRR500997	@dbgap@:reads/SRP012006/SRS287616/SRX149687/SRR500997/SRR500997.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-01A-01D	DNA	EFO	SRS287616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01004-CLS_F09	SRX149687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-01A-01D GS01004-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44533-FS3_L01.bam	SRR500997	@dbgap@:reads/SRP012006/SRS287616/SRX149687/SRR500997/SRR500997.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-11A-01D	DNA	EFO	SRS287617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C03	SRX149686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44634-FS3_L01.bam	SRR501003	@dbgap@:reads/SRP012006/SRS287617/SRX149686/SRR501003/SRR501003.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJPGY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPGY_NormalVsPrimary.png	4			
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-11A-01D	DNA	EFO	SRS287617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C03	SRX149686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44634-FS3_L01.bam	SRR501003	@dbgap@:reads/SRP012006/SRS287617/SRX149686/SRR501003/SRR501003.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPGY_NormalVsPrimary.png	4			
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-11A-01D	DNA	EFO	SRS287617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C03	SRX149686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44634-FS3_L01.bam	SRR501003	@dbgap@:reads/SRP012006/SRS287617/SRX149686/SRR501003/SRR501003.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPGY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPGY_NormalVsPrimary.png	4			
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-11A-01D	DNA	EFO	SRS287617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C03	SRX149686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44634-FS3_L01.bam	SRR501003	@dbgap@:reads/SRP012006/SRS287617/SRX149686/SRR501003/SRR501003.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPGY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPGY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJPGY_NormalVsPrimary.maf.txt	3
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-11A-01D	DNA	EFO	SRS287617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C03	SRX149686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44634-FS3_L01.bam	SRR501003	@dbgap@:reads/SRP012006/SRS287617/SRX149686/SRR501003/SRR501003.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPGY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPGY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-11A-01D	DNA	EFO	SRS287617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C03	SRX149686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44634-FS3_L01.bam	SRR501003	@dbgap@:reads/SRP012006/SRS287617/SRX149686/SRR501003/SRR501003.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPGY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPGY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-11A-01D	DNA	EFO	SRS287617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C03	SRX149686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44634-FS3_L01.bam	SRR501003	@dbgap@:reads/SRP012006/SRS287617/SRX149686/SRR501003/SRR501003.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPGY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPGY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-11A-01D	DNA	EFO	SRS287617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C03	SRX149686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44634-FS3_L01.bam	SRR501003	@dbgap@:reads/SRP012006/SRS287617/SRX149686/SRR501003/SRR501003.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPGY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPGY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-11A-01D	DNA	EFO	SRS287617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C03	SRX149686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44634-FS3_L01.bam	SRR501003	@dbgap@:reads/SRP012006/SRS287617/SRX149686/SRR501003/SRR501003.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPGY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPGY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-11A-01D	DNA	EFO	SRS287617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C03	SRX149686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44634-FS3_L01.bam	SRR501003	@dbgap@:reads/SRP012006/SRS287617/SRX149686/SRR501003/SRR501003.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPGY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPGY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-11A-01D	DNA	EFO	SRS287617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C03	SRX149686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44634-FS3_L01.bam	SRR501003	@dbgap@:reads/SRP012006/SRS287617/SRX149686/SRR501003/SRR501003.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPGY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPGY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-11A-01D	DNA	EFO	SRS287617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C03	SRX149686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44634-FS3_L01.bam	SRR501003	@dbgap@:reads/SRP012006/SRS287617/SRX149686/SRR501003/SRR501003.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPGY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPGY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-11A-01D	DNA	EFO	SRS287617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C03	SRX149686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44634-FS3_L01.bam	SRR501003	@dbgap@:reads/SRP012006/SRS287617/SRX149686/SRR501003/SRR501003.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-11A-01D	DNA	EFO	SRS287617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C03	SRX149686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44634-FS3_L01.bam	SRR501003	@dbgap@:reads/SRP012006/SRS287617/SRX149686/SRR501003/SRR501003.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-11A-01D	DNA	EFO	SRS287617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C03	SRX149686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPGY-11A-01D GS00941-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44634-FS3_L01.bam	SRR501003	@dbgap@:reads/SRP012006/SRS287617/SRX149686/SRR501003/SRR501003.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-01A-01D	DNA	EFO	SRS301299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B09	SRX202090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51903-FS3_L01.bam	SRR610049	@dbgap@:reads/SRP012006/SRS301299/SRX202090/SRR610049/SRR610049.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJPHA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPHA_NormalVsPrimary.png	4			
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-01A-01D	DNA	EFO	SRS301299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B09	SRX202090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51903-FS3_L01.bam	SRR610049	@dbgap@:reads/SRP012006/SRS301299/SRX202090/SRR610049/SRR610049.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPHA_NormalVsPrimary.png	4			
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-01A-01D	DNA	EFO	SRS301299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B09	SRX202090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51903-FS3_L01.bam	SRR610049	@dbgap@:reads/SRP012006/SRS301299/SRX202090/SRR610049/SRR610049.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPHA_NormalVsPrimary.png	4			
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-01A-01D	DNA	EFO	SRS301299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B09	SRX202090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51903-FS3_L01.bam	SRR610049	@dbgap@:reads/SRP012006/SRS301299/SRX202090/SRR610049/SRR610049.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJPHA_NormalVsPrimary.maf.txt	3
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-01A-01D	DNA	EFO	SRS301299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B09	SRX202090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51903-FS3_L01.bam	SRR610049	@dbgap@:reads/SRP012006/SRS301299/SRX202090/SRR610049/SRR610049.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-01A-01D	DNA	EFO	SRS301299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B09	SRX202090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51903-FS3_L01.bam	SRR610049	@dbgap@:reads/SRP012006/SRS301299/SRX202090/SRR610049/SRR610049.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-01A-01D	DNA	EFO	SRS301299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B09	SRX202090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51903-FS3_L01.bam	SRR610049	@dbgap@:reads/SRP012006/SRS301299/SRX202090/SRR610049/SRR610049.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-01A-01D	DNA	EFO	SRS301299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B09	SRX202090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51903-FS3_L01.bam	SRR610049	@dbgap@:reads/SRP012006/SRS301299/SRX202090/SRR610049/SRR610049.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-01A-01D	DNA	EFO	SRS301299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B09	SRX202090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51903-FS3_L01.bam	SRR610049	@dbgap@:reads/SRP012006/SRS301299/SRX202090/SRR610049/SRR610049.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-01A-01D	DNA	EFO	SRS301299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B09	SRX202090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51903-FS3_L01.bam	SRR610049	@dbgap@:reads/SRP012006/SRS301299/SRX202090/SRR610049/SRR610049.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-01A-01D	DNA	EFO	SRS301299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B09	SRX202090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51903-FS3_L01.bam	SRR610049	@dbgap@:reads/SRP012006/SRS301299/SRX202090/SRR610049/SRR610049.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-01A-01D	DNA	EFO	SRS301299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B09	SRX202090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51903-FS3_L01.bam	SRR610049	@dbgap@:reads/SRP012006/SRS301299/SRX202090/SRR610049/SRR610049.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-01A-01D	DNA	EFO	SRS301299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B09	SRX202090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51903-FS3_L01.bam	SRR610049	@dbgap@:reads/SRP012006/SRS301299/SRX202090/SRR610049/SRR610049.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-01A-01D	DNA	EFO	SRS301299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B09	SRX202090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51903-FS3_L01.bam	SRR610049	@dbgap@:reads/SRP012006/SRS301299/SRX202090/SRR610049/SRR610049.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-01A-01D	DNA	EFO	SRS301299	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B09	SRX202090		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-01A-01D GS01073-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51903-FS3_L01.bam	SRR610049	@dbgap@:reads/SRP012006/SRS301299/SRX202090/SRR610049/SRR610049.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-11A-01D	DNA	EFO	SRS373595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H11	SRX202089		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51902-FS3_L01.bam	SRR610057	@dbgap@:reads/SRP012006/SRS373595/SRX202089/SRR610057/SRR610057.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAJPHA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPHA_NormalVsPrimary.png	4			
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-11A-01D	DNA	EFO	SRS373595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H11	SRX202089		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51902-FS3_L01.bam	SRR610057	@dbgap@:reads/SRP012006/SRS373595/SRX202089/SRR610057/SRR610057.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPHA_NormalVsPrimary.png	4			
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-11A-01D	DNA	EFO	SRS373595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H11	SRX202089		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51902-FS3_L01.bam	SRR610057	@dbgap@:reads/SRP012006/SRS373595/SRX202089/SRR610057/SRR610057.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAJPHA_NormalVsPrimary.png	4			
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-11A-01D	DNA	EFO	SRS373595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H11	SRX202089		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51902-FS3_L01.bam	SRR610057	@dbgap@:reads/SRP012006/SRS373595/SRX202089/SRR610057/SRR610057.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAJPHA_NormalVsPrimary.maf.txt	3
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-11A-01D	DNA	EFO	SRS373595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H11	SRX202089		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51902-FS3_L01.bam	SRR610057	@dbgap@:reads/SRP012006/SRS373595/SRX202089/SRR610057/SRR610057.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-11A-01D	DNA	EFO	SRS373595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H11	SRX202089		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51902-FS3_L01.bam	SRR610057	@dbgap@:reads/SRP012006/SRS373595/SRX202089/SRR610057/SRR610057.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-11A-01D	DNA	EFO	SRS373595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H11	SRX202089		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51902-FS3_L01.bam	SRR610057	@dbgap@:reads/SRP012006/SRS373595/SRX202089/SRR610057/SRR610057.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-11A-01D	DNA	EFO	SRS373595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H11	SRX202089		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51902-FS3_L01.bam	SRR610057	@dbgap@:reads/SRP012006/SRS373595/SRX202089/SRR610057/SRR610057.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-11A-01D	DNA	EFO	SRS373595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H11	SRX202089		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51902-FS3_L01.bam	SRR610057	@dbgap@:reads/SRP012006/SRS373595/SRX202089/SRR610057/SRR610057.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-11A-01D	DNA	EFO	SRS373595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H11	SRX202089		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51902-FS3_L01.bam	SRR610057	@dbgap@:reads/SRP012006/SRS373595/SRX202089/SRR610057/SRR610057.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-11A-01D	DNA	EFO	SRS373595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H11	SRX202089		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51902-FS3_L01.bam	SRR610057	@dbgap@:reads/SRP012006/SRS373595/SRX202089/SRR610057/SRR610057.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-11A-01D	DNA	EFO	SRS373595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H11	SRX202089		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51902-FS3_L01.bam	SRR610057	@dbgap@:reads/SRP012006/SRS373595/SRX202089/SRR610057/SRR610057.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAJPHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAJPHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-11A-01D	DNA	EFO	SRS373595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H11	SRX202089		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51902-FS3_L01.bam	SRR610057	@dbgap@:reads/SRP012006/SRS373595/SRX202089/SRR610057/SRR610057.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-11A-01D	DNA	EFO	SRS373595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H11	SRX202089		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51902-FS3_L01.bam	SRR610057	@dbgap@:reads/SRP012006/SRS373595/SRX202089/SRR610057/SRR610057.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-11A-01D	DNA	EFO	SRS373595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H11	SRX202089		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAJPHA-11A-01D GS01073-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51902-FS3_L01.bam	SRR610057	@dbgap@:reads/SRP012006/SRS373595/SRX202089/SRR610057/SRR610057.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-01A-01D	DNA	EFO	SRS190179	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D01	SRX148007		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42576-FS3_L01.bam	SRR496965	@dbgap@:reads/SRP012006/SRS190179/SRX148007/SRR496965/SRR496965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKFME_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKFME_NormalVsPrimary.png	4			
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-01A-01D	DNA	EFO	SRS190179	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D01	SRX148007		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42576-FS3_L01.bam	SRR496965	@dbgap@:reads/SRP012006/SRS190179/SRX148007/SRR496965/SRR496965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKFME_NormalVsPrimary.png	4			
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-01A-01D	DNA	EFO	SRS190179	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D01	SRX148007		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42576-FS3_L01.bam	SRR496965	@dbgap@:reads/SRP012006/SRS190179/SRX148007/SRR496965/SRR496965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKFME_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKFME_NormalVsPrimary.png	4			
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-01A-01D	DNA	EFO	SRS190179	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D01	SRX148007		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42576-FS3_L01.bam	SRR496965	@dbgap@:reads/SRP012006/SRS190179/SRX148007/SRR496965/SRR496965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKFME_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKFME_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKFME_NormalVsPrimary.maf.txt	3
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-01A-01D	DNA	EFO	SRS190179	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D01	SRX148007		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42576-FS3_L01.bam	SRR496965	@dbgap@:reads/SRP012006/SRS190179/SRX148007/SRR496965/SRR496965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKFME_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKFME_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-01A-01D	DNA	EFO	SRS190179	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D01	SRX148007		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42576-FS3_L01.bam	SRR496965	@dbgap@:reads/SRP012006/SRS190179/SRX148007/SRR496965/SRR496965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKFME_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKFME_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-01A-01D	DNA	EFO	SRS190179	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D01	SRX148007		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42576-FS3_L01.bam	SRR496965	@dbgap@:reads/SRP012006/SRS190179/SRX148007/SRR496965/SRR496965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKFME_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKFME_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-01A-01D	DNA	EFO	SRS190179	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D01	SRX148007		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42576-FS3_L01.bam	SRR496965	@dbgap@:reads/SRP012006/SRS190179/SRX148007/SRR496965/SRR496965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKFME_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKFME_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-01A-01D	DNA	EFO	SRS190179	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D01	SRX148007		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42576-FS3_L01.bam	SRR496965	@dbgap@:reads/SRP012006/SRS190179/SRX148007/SRR496965/SRR496965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKFME_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKFME_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-01A-01D	DNA	EFO	SRS190179	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D01	SRX148007		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42576-FS3_L01.bam	SRR496965	@dbgap@:reads/SRP012006/SRS190179/SRX148007/SRR496965/SRR496965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKFME_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKFME_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-01A-01D	DNA	EFO	SRS190179	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D01	SRX148007		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42576-FS3_L01.bam	SRR496965	@dbgap@:reads/SRP012006/SRS190179/SRX148007/SRR496965/SRR496965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKFME_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKFME_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-01A-01D	DNA	EFO	SRS190179	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D01	SRX148007		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42576-FS3_L01.bam	SRR496965	@dbgap@:reads/SRP012006/SRS190179/SRX148007/SRR496965/SRR496965.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKFME_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKFME_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-01A-01D	DNA	EFO	SRS190179	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D01	SRX148007		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42576-FS3_L01.bam	SRR496965	@dbgap@:reads/SRP012006/SRS190179/SRX148007/SRR496965/SRR496965.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-01A-01D	DNA	EFO	SRS190179	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D01	SRX148007		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42576-FS3_L01.bam	SRR496965	@dbgap@:reads/SRP012006/SRS190179/SRX148007/SRR496965/SRR496965.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-01A-01D	DNA	EFO	SRS190179	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D01	SRX148007		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-01A-01D GS00941-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42576-FS3_L01.bam	SRR496965	@dbgap@:reads/SRP012006/SRS190179/SRX148007/SRR496965/SRR496965.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-10A-01D	DNA	EFO	SRS190180	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D03	SRX148006		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42574-FS3_L01.bam	SRR496973	@dbgap@:reads/SRP012006/SRS190180/SRX148006/SRR496973/SRR496973.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKFME_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKFME_NormalVsPrimary.png	4			
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-10A-01D	DNA	EFO	SRS190180	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D03	SRX148006		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42574-FS3_L01.bam	SRR496973	@dbgap@:reads/SRP012006/SRS190180/SRX148006/SRR496973/SRR496973.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKFME_NormalVsPrimary.png	4			
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-10A-01D	DNA	EFO	SRS190180	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D03	SRX148006		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42574-FS3_L01.bam	SRR496973	@dbgap@:reads/SRP012006/SRS190180/SRX148006/SRR496973/SRR496973.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKFME_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKFME_NormalVsPrimary.png	4			
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-10A-01D	DNA	EFO	SRS190180	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D03	SRX148006		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42574-FS3_L01.bam	SRR496973	@dbgap@:reads/SRP012006/SRS190180/SRX148006/SRR496973/SRR496973.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKFME_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKFME_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKFME_NormalVsPrimary.maf.txt	3
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-10A-01D	DNA	EFO	SRS190180	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D03	SRX148006		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42574-FS3_L01.bam	SRR496973	@dbgap@:reads/SRP012006/SRS190180/SRX148006/SRR496973/SRR496973.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKFME_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKFME_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-10A-01D	DNA	EFO	SRS190180	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D03	SRX148006		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42574-FS3_L01.bam	SRR496973	@dbgap@:reads/SRP012006/SRS190180/SRX148006/SRR496973/SRR496973.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKFME_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKFME_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-10A-01D	DNA	EFO	SRS190180	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D03	SRX148006		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42574-FS3_L01.bam	SRR496973	@dbgap@:reads/SRP012006/SRS190180/SRX148006/SRR496973/SRR496973.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKFME_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKFME_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-10A-01D	DNA	EFO	SRS190180	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D03	SRX148006		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42574-FS3_L01.bam	SRR496973	@dbgap@:reads/SRP012006/SRS190180/SRX148006/SRR496973/SRR496973.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKFME_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKFME_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-10A-01D	DNA	EFO	SRS190180	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D03	SRX148006		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42574-FS3_L01.bam	SRR496973	@dbgap@:reads/SRP012006/SRS190180/SRX148006/SRR496973/SRR496973.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKFME_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKFME_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-10A-01D	DNA	EFO	SRS190180	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D03	SRX148006		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42574-FS3_L01.bam	SRR496973	@dbgap@:reads/SRP012006/SRS190180/SRX148006/SRR496973/SRR496973.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKFME_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKFME_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-10A-01D	DNA	EFO	SRS190180	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D03	SRX148006		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42574-FS3_L01.bam	SRR496973	@dbgap@:reads/SRP012006/SRS190180/SRX148006/SRR496973/SRR496973.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKFME_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKFME_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-10A-01D	DNA	EFO	SRS190180	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D03	SRX148006		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42574-FS3_L01.bam	SRR496973	@dbgap@:reads/SRP012006/SRS190180/SRX148006/SRR496973/SRR496973.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKFME_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKFME_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-10A-01D	DNA	EFO	SRS190180	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D03	SRX148006		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42574-FS3_L01.bam	SRR496973	@dbgap@:reads/SRP012006/SRS190180/SRX148006/SRR496973/SRR496973.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-10A-01D	DNA	EFO	SRS190180	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D03	SRX148006		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42574-FS3_L01.bam	SRR496973	@dbgap@:reads/SRP012006/SRS190180/SRX148006/SRR496973/SRR496973.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-10A-01D	DNA	EFO	SRS190180	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D03	SRX148006		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKFME-10A-01D GS00941-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42574-FS3_L01.bam	SRR496973	@dbgap@:reads/SRP012006/SRS190180/SRX148006/SRR496973/SRR496973.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-01A-01D	DNA	EFO	SRS190183	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E01	SRX148444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42558-FS3_L01.bam	SRR497752	@dbgap@:reads/SRP012006/SRS190183/SRX148444/SRR497752/SRR497752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKGED_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKGED_NormalVsPrimary.png	4			
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-01A-01D	DNA	EFO	SRS190183	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E01	SRX148444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42558-FS3_L01.bam	SRR497752	@dbgap@:reads/SRP012006/SRS190183/SRX148444/SRR497752/SRR497752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKGED_NormalVsPrimary.png	4			
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-01A-01D	DNA	EFO	SRS190183	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E01	SRX148444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42558-FS3_L01.bam	SRR497752	@dbgap@:reads/SRP012006/SRS190183/SRX148444/SRR497752/SRR497752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKGED_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKGED_NormalVsPrimary.png	4			
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-01A-01D	DNA	EFO	SRS190183	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E01	SRX148444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42558-FS3_L01.bam	SRR497752	@dbgap@:reads/SRP012006/SRS190183/SRX148444/SRR497752/SRR497752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKGED_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKGED_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKGED_NormalVsPrimary.maf.txt	3
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-01A-01D	DNA	EFO	SRS190183	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E01	SRX148444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42558-FS3_L01.bam	SRR497752	@dbgap@:reads/SRP012006/SRS190183/SRX148444/SRR497752/SRR497752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKGED_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKGED_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-01A-01D	DNA	EFO	SRS190183	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E01	SRX148444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42558-FS3_L01.bam	SRR497752	@dbgap@:reads/SRP012006/SRS190183/SRX148444/SRR497752/SRR497752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKGED_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKGED_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-01A-01D	DNA	EFO	SRS190183	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E01	SRX148444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42558-FS3_L01.bam	SRR497752	@dbgap@:reads/SRP012006/SRS190183/SRX148444/SRR497752/SRR497752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKGED_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKGED_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-01A-01D	DNA	EFO	SRS190183	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E01	SRX148444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42558-FS3_L01.bam	SRR497752	@dbgap@:reads/SRP012006/SRS190183/SRX148444/SRR497752/SRR497752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKGED_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKGED_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-01A-01D	DNA	EFO	SRS190183	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E01	SRX148444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42558-FS3_L01.bam	SRR497752	@dbgap@:reads/SRP012006/SRS190183/SRX148444/SRR497752/SRR497752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKGED_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKGED_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-01A-01D	DNA	EFO	SRS190183	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E01	SRX148444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42558-FS3_L01.bam	SRR497752	@dbgap@:reads/SRP012006/SRS190183/SRX148444/SRR497752/SRR497752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKGED_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKGED_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-01A-01D	DNA	EFO	SRS190183	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E01	SRX148444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42558-FS3_L01.bam	SRR497752	@dbgap@:reads/SRP012006/SRS190183/SRX148444/SRR497752/SRR497752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKGED_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKGED_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-01A-01D	DNA	EFO	SRS190183	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E01	SRX148444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42558-FS3_L01.bam	SRR497752	@dbgap@:reads/SRP012006/SRS190183/SRX148444/SRR497752/SRR497752.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKGED_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKGED_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-01A-01D	DNA	EFO	SRS190183	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E01	SRX148444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42558-FS3_L01.bam	SRR497752	@dbgap@:reads/SRP012006/SRS190183/SRX148444/SRR497752/SRR497752.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-01A-01D	DNA	EFO	SRS190183	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E01	SRX148444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42558-FS3_L01.bam	SRR497752	@dbgap@:reads/SRP012006/SRS190183/SRX148444/SRR497752/SRR497752.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-01A-01D	DNA	EFO	SRS190183	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E01	SRX148444		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-01A-01D GS00941-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42558-FS3_L01.bam	SRR497752	@dbgap@:reads/SRP012006/SRS190183/SRX148444/SRR497752/SRR497752.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-10A-01D	DNA	EFO	SRS190184	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E03	SRX148443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42578-FS3_L01.bam	SRR497760	@dbgap@:reads/SRP012006/SRS190184/SRX148443/SRR497760/SRR497760.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKGED_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKGED_NormalVsPrimary.png	4			
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-10A-01D	DNA	EFO	SRS190184	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E03	SRX148443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42578-FS3_L01.bam	SRR497760	@dbgap@:reads/SRP012006/SRS190184/SRX148443/SRR497760/SRR497760.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKGED_NormalVsPrimary.png	4			
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-10A-01D	DNA	EFO	SRS190184	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E03	SRX148443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42578-FS3_L01.bam	SRR497760	@dbgap@:reads/SRP012006/SRS190184/SRX148443/SRR497760/SRR497760.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKGED_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKGED_NormalVsPrimary.png	4			
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-10A-01D	DNA	EFO	SRS190184	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E03	SRX148443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42578-FS3_L01.bam	SRR497760	@dbgap@:reads/SRP012006/SRS190184/SRX148443/SRR497760/SRR497760.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKGED_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKGED_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKGED_NormalVsPrimary.maf.txt	3
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-10A-01D	DNA	EFO	SRS190184	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E03	SRX148443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42578-FS3_L01.bam	SRR497760	@dbgap@:reads/SRP012006/SRS190184/SRX148443/SRR497760/SRR497760.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKGED_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKGED_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-10A-01D	DNA	EFO	SRS190184	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E03	SRX148443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42578-FS3_L01.bam	SRR497760	@dbgap@:reads/SRP012006/SRS190184/SRX148443/SRR497760/SRR497760.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKGED_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKGED_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-10A-01D	DNA	EFO	SRS190184	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E03	SRX148443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42578-FS3_L01.bam	SRR497760	@dbgap@:reads/SRP012006/SRS190184/SRX148443/SRR497760/SRR497760.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKGED_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKGED_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-10A-01D	DNA	EFO	SRS190184	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E03	SRX148443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42578-FS3_L01.bam	SRR497760	@dbgap@:reads/SRP012006/SRS190184/SRX148443/SRR497760/SRR497760.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKGED_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKGED_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-10A-01D	DNA	EFO	SRS190184	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E03	SRX148443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42578-FS3_L01.bam	SRR497760	@dbgap@:reads/SRP012006/SRS190184/SRX148443/SRR497760/SRR497760.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKGED_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKGED_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-10A-01D	DNA	EFO	SRS190184	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E03	SRX148443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42578-FS3_L01.bam	SRR497760	@dbgap@:reads/SRP012006/SRS190184/SRX148443/SRR497760/SRR497760.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKGED_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKGED_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-10A-01D	DNA	EFO	SRS190184	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E03	SRX148443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42578-FS3_L01.bam	SRR497760	@dbgap@:reads/SRP012006/SRS190184/SRX148443/SRR497760/SRR497760.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKGED_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKGED_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-10A-01D	DNA	EFO	SRS190184	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E03	SRX148443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42578-FS3_L01.bam	SRR497760	@dbgap@:reads/SRP012006/SRS190184/SRX148443/SRR497760/SRR497760.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKGED_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKGED_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-10A-01D	DNA	EFO	SRS190184	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E03	SRX148443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42578-FS3_L01.bam	SRR497760	@dbgap@:reads/SRP012006/SRS190184/SRX148443/SRR497760/SRR497760.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-10A-01D	DNA	EFO	SRS190184	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E03	SRX148443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42578-FS3_L01.bam	SRR497760	@dbgap@:reads/SRP012006/SRS190184/SRX148443/SRR497760/SRR497760.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-10A-01D	DNA	EFO	SRS190184	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E03	SRX148443		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKGED-10A-01D GS00941-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42578-FS3_L01.bam	SRR497760	@dbgap@:reads/SRP012006/SRS190184/SRX148443/SRR497760/SRR497760.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01D	DNA	EFO	SRS190187	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F01	SRX149217		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42560-FS3_L01.bam	SRR500231	@dbgap@:reads/SRP012006/SRS190187/SRX149217/SRR500231/SRR500231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKJGM_Normal02DVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKJGM_Normal02DVsPrimary.png	4			
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01D	DNA	EFO	SRS190187	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F01	SRX149217		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42560-FS3_L01.bam	SRR500231	@dbgap@:reads/SRP012006/SRS190187/SRX149217/SRR500231/SRR500231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKJGM_Normal02DVsPrimary.png	4			
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01D	DNA	EFO	SRS190187	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F01	SRX149217		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42560-FS3_L01.bam	SRR500231	@dbgap@:reads/SRP012006/SRS190187/SRX149217/SRR500231/SRR500231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal01DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal01DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01D	DNA	EFO	SRS190187	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F01	SRX149217		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42560-FS3_L01.bam	SRR500231	@dbgap@:reads/SRP012006/SRS190187/SRX149217/SRR500231/SRR500231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal01DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal01DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01D	DNA	EFO	SRS190187	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F01	SRX149217		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42560-FS3_L01.bam	SRR500231	@dbgap@:reads/SRP012006/SRS190187/SRX149217/SRR500231/SRR500231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal01DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal01DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01D	DNA	EFO	SRS190187	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F01	SRX149217		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42560-FS3_L01.bam	SRR500231	@dbgap@:reads/SRP012006/SRS190187/SRX149217/SRR500231/SRR500231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal01DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal01DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01D	DNA	EFO	SRS190187	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F01	SRX149217		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42560-FS3_L01.bam	SRR500231	@dbgap@:reads/SRP012006/SRS190187/SRX149217/SRR500231/SRR500231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal01DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal01DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01D	DNA	EFO	SRS190187	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F01	SRX149217		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42560-FS3_L01.bam	SRR500231	@dbgap@:reads/SRP012006/SRS190187/SRX149217/SRR500231/SRR500231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal01DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal01DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01D	DNA	EFO	SRS190187	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F01	SRX149217		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42560-FS3_L01.bam	SRR500231	@dbgap@:reads/SRP012006/SRS190187/SRX149217/SRR500231/SRR500231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal01DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal01DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01D	DNA	EFO	SRS190187	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F01	SRX149217		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42560-FS3_L01.bam	SRR500231	@dbgap@:reads/SRP012006/SRS190187/SRX149217/SRR500231/SRR500231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal01DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal01DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01D	DNA	EFO	SRS190187	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F01	SRX149217		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42560-FS3_L01.bam	SRR500231	@dbgap@:reads/SRP012006/SRS190187/SRX149217/SRR500231/SRR500231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal02DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKJGM_Normal02DVsPrimary.png	4			
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01D	DNA	EFO	SRS190187	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F01	SRX149217		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42560-FS3_L01.bam	SRR500231	@dbgap@:reads/SRP012006/SRS190187/SRX149217/SRR500231/SRR500231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal02DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal02DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKJGM_Normal02DVsPrimary.maf.txt	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01D	DNA	EFO	SRS190187	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F01	SRX149217		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42560-FS3_L01.bam	SRR500231	@dbgap@:reads/SRP012006/SRS190187/SRX149217/SRR500231/SRR500231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal02DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal02DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01D	DNA	EFO	SRS190187	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F01	SRX149217		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42560-FS3_L01.bam	SRR500231	@dbgap@:reads/SRP012006/SRS190187/SRX149217/SRR500231/SRR500231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal02DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal02DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01D	DNA	EFO	SRS190187	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F01	SRX149217		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42560-FS3_L01.bam	SRR500231	@dbgap@:reads/SRP012006/SRS190187/SRX149217/SRR500231/SRR500231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal02DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal02DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01D	DNA	EFO	SRS190187	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F01	SRX149217		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42560-FS3_L01.bam	SRR500231	@dbgap@:reads/SRP012006/SRS190187/SRX149217/SRR500231/SRR500231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal02DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal02DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01D	DNA	EFO	SRS190187	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F01	SRX149217		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42560-FS3_L01.bam	SRR500231	@dbgap@:reads/SRP012006/SRS190187/SRX149217/SRR500231/SRR500231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal02DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal02DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01D	DNA	EFO	SRS190187	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F01	SRX149217		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42560-FS3_L01.bam	SRR500231	@dbgap@:reads/SRP012006/SRS190187/SRX149217/SRR500231/SRR500231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal02DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal02DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01D	DNA	EFO	SRS190187	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F01	SRX149217		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42560-FS3_L01.bam	SRR500231	@dbgap@:reads/SRP012006/SRS190187/SRX149217/SRR500231/SRR500231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal02DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal02DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01D	DNA	EFO	SRS190187	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F01	SRX149217		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42560-FS3_L01.bam	SRR500231	@dbgap@:reads/SRP012006/SRS190187/SRX149217/SRR500231/SRR500231.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal02DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal02DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01D	DNA	EFO	SRS190187	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F01	SRX149217		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42560-FS3_L01.bam	SRR500231	@dbgap@:reads/SRP012006/SRS190187/SRX149217/SRR500231/SRR500231.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01D	DNA	EFO	SRS190187	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F01	SRX149217		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42560-FS3_L01.bam	SRR500231	@dbgap@:reads/SRP012006/SRS190187/SRX149217/SRR500231/SRR500231.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01D	DNA	EFO	SRS190187	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F01	SRX149217		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-01A-01D GS00941-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42560-FS3_L01.bam	SRR500231	@dbgap@:reads/SRP012006/SRS190187/SRX149217/SRR500231/SRR500231.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-01D	DNA	EFO	SRS190188	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-01D GS00941-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F03	SRX149216	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-01D GS00941-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42559-FS3_L01.bam	SRR500239	@dbgap@:reads/SRP012006/SRS190188/SRX149216/SRR500239/SRR500239.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3						
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-01D	DNA	EFO	SRS190188	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-01D GS00941-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F03	SRX149216	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-01D GS00941-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42559-FS3_L01.bam	SRR500239	@dbgap@:reads/SRP012006/SRS190188/SRX149216/SRR500239/SRR500239.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal01DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal01DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-01D	DNA	EFO	SRS190188	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-01D GS00941-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F03	SRX149216	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-01D GS00941-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42559-FS3_L01.bam	SRR500239	@dbgap@:reads/SRP012006/SRS190188/SRX149216/SRR500239/SRR500239.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal01DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal01DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-01D	DNA	EFO	SRS190188	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-01D GS00941-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F03	SRX149216	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-01D GS00941-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42559-FS3_L01.bam	SRR500239	@dbgap@:reads/SRP012006/SRS190188/SRX149216/SRR500239/SRR500239.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal01DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal01DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-01D	DNA	EFO	SRS190188	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-01D GS00941-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F03	SRX149216	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-01D GS00941-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42559-FS3_L01.bam	SRR500239	@dbgap@:reads/SRP012006/SRS190188/SRX149216/SRR500239/SRR500239.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal01DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal01DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-01D	DNA	EFO	SRS190188	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-01D GS00941-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F03	SRX149216	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-01D GS00941-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42559-FS3_L01.bam	SRR500239	@dbgap@:reads/SRP012006/SRS190188/SRX149216/SRR500239/SRR500239.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal01DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal01DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-01D	DNA	EFO	SRS190188	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-01D GS00941-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F03	SRX149216	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-01D GS00941-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42559-FS3_L01.bam	SRR500239	@dbgap@:reads/SRP012006/SRS190188/SRX149216/SRR500239/SRR500239.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal01DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal01DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-01D	DNA	EFO	SRS190188	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-01D GS00941-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F03	SRX149216	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-01D GS00941-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42559-FS3_L01.bam	SRR500239	@dbgap@:reads/SRP012006/SRS190188/SRX149216/SRR500239/SRR500239.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal01DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal01DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-01D	DNA	EFO	SRS190188	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-01D GS00941-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F03	SRX149216	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-01D GS00941-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42559-FS3_L01.bam	SRR500239	@dbgap@:reads/SRP012006/SRS190188/SRX149216/SRR500239/SRR500239.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal01DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal01DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-01D	DNA	EFO	SRS190188	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-01D GS00941-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F03	SRX149216	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-01D GS00941-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42559-FS3_L01.bam	SRR500239	@dbgap@:reads/SRP012006/SRS190188/SRX149216/SRR500239/SRR500239.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-01D	DNA	EFO	SRS190188	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-01D GS00941-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F03	SRX149216	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-01D GS00941-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42559-FS3_L01.bam	SRR500239	@dbgap@:reads/SRP012006/SRS190188/SRX149216/SRR500239/SRR500239.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-01D	DNA	EFO	SRS190188	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-01D GS00941-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F03	SRX149216	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. Statistics measuring the quality of SV, MEI, and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-01D GS00941-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42559-FS3_L01.bam	SRR500239	@dbgap@:reads/SRP012006/SRS190188/SRX149216/SRR500239/SRR500239.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-02D	DNA	EFO	SRS528147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_F12	SRX424488	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) Statistics measuring the quality of MEI and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65822-FS3_L01.bam	SRR1105730	@dbgap@:reads/SRP012006/SRS528147/SRX424488/SRR1105730/SRR1105730.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKJGM_Normal02DVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKJGM_Normal02DVsPrimary.png	4			
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-02D	DNA	EFO	SRS528147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_F12	SRX424488	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) Statistics measuring the quality of MEI and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65822-FS3_L01.bam	SRR1105730	@dbgap@:reads/SRP012006/SRS528147/SRX424488/SRR1105730/SRR1105730.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKJGM_Normal02DVsPrimary.png	4			
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-02D	DNA	EFO	SRS528147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_F12	SRX424488	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) Statistics measuring the quality of MEI and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65822-FS3_L01.bam	SRR1105730	@dbgap@:reads/SRP012006/SRS528147/SRX424488/SRR1105730/SRR1105730.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal02DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKJGM_Normal02DVsPrimary.png	4			
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-02D	DNA	EFO	SRS528147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_F12	SRX424488	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) Statistics measuring the quality of MEI and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65822-FS3_L01.bam	SRR1105730	@dbgap@:reads/SRP012006/SRS528147/SRX424488/SRR1105730/SRR1105730.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal02DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal02DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKJGM_Normal02DVsPrimary.maf.txt	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-02D	DNA	EFO	SRS528147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_F12	SRX424488	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) Statistics measuring the quality of MEI and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65822-FS3_L01.bam	SRR1105730	@dbgap@:reads/SRP012006/SRS528147/SRX424488/SRR1105730/SRR1105730.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal02DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal02DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-02D	DNA	EFO	SRS528147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_F12	SRX424488	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) Statistics measuring the quality of MEI and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65822-FS3_L01.bam	SRR1105730	@dbgap@:reads/SRP012006/SRS528147/SRX424488/SRR1105730/SRR1105730.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal02DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal02DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-02D	DNA	EFO	SRS528147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_F12	SRX424488	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) Statistics measuring the quality of MEI and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65822-FS3_L01.bam	SRR1105730	@dbgap@:reads/SRP012006/SRS528147/SRX424488/SRR1105730/SRR1105730.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal02DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal02DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-02D	DNA	EFO	SRS528147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_F12	SRX424488	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) Statistics measuring the quality of MEI and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65822-FS3_L01.bam	SRR1105730	@dbgap@:reads/SRP012006/SRS528147/SRX424488/SRR1105730/SRR1105730.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal02DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal02DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-02D	DNA	EFO	SRS528147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_F12	SRX424488	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) Statistics measuring the quality of MEI and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65822-FS3_L01.bam	SRR1105730	@dbgap@:reads/SRP012006/SRS528147/SRX424488/SRR1105730/SRR1105730.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal02DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal02DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-02D	DNA	EFO	SRS528147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_F12	SRX424488	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) Statistics measuring the quality of MEI and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65822-FS3_L01.bam	SRR1105730	@dbgap@:reads/SRP012006/SRS528147/SRX424488/SRR1105730/SRR1105730.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal02DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal02DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-02D	DNA	EFO	SRS528147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_F12	SRX424488	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) Statistics measuring the quality of MEI and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65822-FS3_L01.bam	SRR1105730	@dbgap@:reads/SRP012006/SRS528147/SRX424488/SRR1105730/SRR1105730.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal02DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal02DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-02D	DNA	EFO	SRS528147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_F12	SRX424488	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) Statistics measuring the quality of MEI and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65822-FS3_L01.bam	SRR1105730	@dbgap@:reads/SRP012006/SRS528147/SRX424488/SRR1105730/SRR1105730.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKJGM_Normal02DVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKJGM_Normal02DVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-02D	DNA	EFO	SRS528147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_F12	SRX424488	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) Statistics measuring the quality of MEI and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65822-FS3_L01.bam	SRR1105730	@dbgap@:reads/SRP012006/SRS528147/SRX424488/SRR1105730/SRR1105730.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-02D	DNA	EFO	SRS528147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_F12	SRX424488	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) Statistics measuring the quality of MEI and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65822-FS3_L01.bam	SRR1105730	@dbgap@:reads/SRP012006/SRS528147/SRX424488/SRR1105730/SRR1105730.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-11A-02D	DNA	EFO	SRS528147	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_F12	SRX424488	"WARNING: UCV (unusual coverage variation) genome with the following QC observations: 1) There is more variability in 100kb coverage windows than we generally see for normal genomes. The number of CNV segments, the total number of CNV bases, and the rates of novel CNVs are also high. Together these data suggest a reduction in the quality of CNV calls. 2) The list of all identified junctions (adjacent regions in the sample genome that are not adjacent in the reference genome) in the sample genome is enriched for short range strand-inverted calls (SIRS). Previous experience suggests that these SIRS are enriched for errors. In contrast, the list of junctions filtered for high confidence criteria looks completely normal and is unaffected by this issue. If it would be helpful, we can provide you with tools to filter SIRS junctions from the allJunctions file and instructions to regenerate the SvEvents files using this filtered data set. We believe these files should be depleted for false positive junctions and events. 3) Statistics measuring the quality of MEI and small variant calls look completely normal."	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKJGM-11A-02D GS01997-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65822-FS3_L01.bam	SRR1105730	@dbgap@:reads/SRP012006/SRS528147/SRX424488/SRR1105730/SRR1105730.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-01A-01D	DNA	EFO	SRS301301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C09	SRX187141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51834-FS3_L01.bam	SRR570810	@dbgap@:reads/SRP012006/SRS301301/SRX187141/SRR570810/SRR570810.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKKSE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKKSE_NormalVsPrimary.png	4			
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-01A-01D	DNA	EFO	SRS301301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C09	SRX187141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51834-FS3_L01.bam	SRR570810	@dbgap@:reads/SRP012006/SRS301301/SRX187141/SRR570810/SRR570810.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKKSE_NormalVsPrimary.png	4			
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-01A-01D	DNA	EFO	SRS301301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C09	SRX187141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51834-FS3_L01.bam	SRR570810	@dbgap@:reads/SRP012006/SRS301301/SRX187141/SRR570810/SRR570810.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKKSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKKSE_NormalVsPrimary.png	4			
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-01A-01D	DNA	EFO	SRS301301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C09	SRX187141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51834-FS3_L01.bam	SRR570810	@dbgap@:reads/SRP012006/SRS301301/SRX187141/SRR570810/SRR570810.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKKSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKKSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKKSE_NormalVsPrimary.maf.txt	3
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-01A-01D	DNA	EFO	SRS301301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C09	SRX187141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51834-FS3_L01.bam	SRR570810	@dbgap@:reads/SRP012006/SRS301301/SRX187141/SRR570810/SRR570810.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKKSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKKSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-01A-01D	DNA	EFO	SRS301301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C09	SRX187141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51834-FS3_L01.bam	SRR570810	@dbgap@:reads/SRP012006/SRS301301/SRX187141/SRR570810/SRR570810.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKKSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKKSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-01A-01D	DNA	EFO	SRS301301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C09	SRX187141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51834-FS3_L01.bam	SRR570810	@dbgap@:reads/SRP012006/SRS301301/SRX187141/SRR570810/SRR570810.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKKSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKKSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-01A-01D	DNA	EFO	SRS301301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C09	SRX187141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51834-FS3_L01.bam	SRR570810	@dbgap@:reads/SRP012006/SRS301301/SRX187141/SRR570810/SRR570810.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKKSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKKSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-01A-01D	DNA	EFO	SRS301301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C09	SRX187141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51834-FS3_L01.bam	SRR570810	@dbgap@:reads/SRP012006/SRS301301/SRX187141/SRR570810/SRR570810.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKKSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKKSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-01A-01D	DNA	EFO	SRS301301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C09	SRX187141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51834-FS3_L01.bam	SRR570810	@dbgap@:reads/SRP012006/SRS301301/SRX187141/SRR570810/SRR570810.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKKSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKKSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-01A-01D	DNA	EFO	SRS301301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C09	SRX187141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51834-FS3_L01.bam	SRR570810	@dbgap@:reads/SRP012006/SRS301301/SRX187141/SRR570810/SRR570810.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKKSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKKSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-01A-01D	DNA	EFO	SRS301301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C09	SRX187141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51834-FS3_L01.bam	SRR570810	@dbgap@:reads/SRP012006/SRS301301/SRX187141/SRR570810/SRR570810.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKKSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKKSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-01A-01D	DNA	EFO	SRS301301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C09	SRX187141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51834-FS3_L01.bam	SRR570810	@dbgap@:reads/SRP012006/SRS301301/SRX187141/SRR570810/SRR570810.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-01A-01D	DNA	EFO	SRS301301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C09	SRX187141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51834-FS3_L01.bam	SRR570810	@dbgap@:reads/SRP012006/SRS301301/SRX187141/SRR570810/SRR570810.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-01A-01D	DNA	EFO	SRS301301	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C09	SRX187141		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-01A-01D GS01073-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51834-FS3_L01.bam	SRR570810	@dbgap@:reads/SRP012006/SRS301301/SRX187141/SRR570810/SRR570810.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-11A-01D	DNA	EFO	SRS301302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A12	SRX187140		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52342-FS3_L01.bam	SRR570818	@dbgap@:reads/SRP012006/SRS301302/SRX187140/SRR570818/SRR570818.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKKSE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKKSE_NormalVsPrimary.png	4			
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-11A-01D	DNA	EFO	SRS301302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A12	SRX187140		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52342-FS3_L01.bam	SRR570818	@dbgap@:reads/SRP012006/SRS301302/SRX187140/SRR570818/SRR570818.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKKSE_NormalVsPrimary.png	4			
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-11A-01D	DNA	EFO	SRS301302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A12	SRX187140		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52342-FS3_L01.bam	SRR570818	@dbgap@:reads/SRP012006/SRS301302/SRX187140/SRR570818/SRR570818.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKKSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKKSE_NormalVsPrimary.png	4			
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-11A-01D	DNA	EFO	SRS301302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A12	SRX187140		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52342-FS3_L01.bam	SRR570818	@dbgap@:reads/SRP012006/SRS301302/SRX187140/SRR570818/SRR570818.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKKSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKKSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKKSE_NormalVsPrimary.maf.txt	3
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-11A-01D	DNA	EFO	SRS301302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A12	SRX187140		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52342-FS3_L01.bam	SRR570818	@dbgap@:reads/SRP012006/SRS301302/SRX187140/SRR570818/SRR570818.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKKSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKKSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-11A-01D	DNA	EFO	SRS301302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A12	SRX187140		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52342-FS3_L01.bam	SRR570818	@dbgap@:reads/SRP012006/SRS301302/SRX187140/SRR570818/SRR570818.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKKSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKKSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-11A-01D	DNA	EFO	SRS301302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A12	SRX187140		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52342-FS3_L01.bam	SRR570818	@dbgap@:reads/SRP012006/SRS301302/SRX187140/SRR570818/SRR570818.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKKSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKKSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-11A-01D	DNA	EFO	SRS301302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A12	SRX187140		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52342-FS3_L01.bam	SRR570818	@dbgap@:reads/SRP012006/SRS301302/SRX187140/SRR570818/SRR570818.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKKSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKKSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-11A-01D	DNA	EFO	SRS301302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A12	SRX187140		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52342-FS3_L01.bam	SRR570818	@dbgap@:reads/SRP012006/SRS301302/SRX187140/SRR570818/SRR570818.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKKSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKKSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-11A-01D	DNA	EFO	SRS301302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A12	SRX187140		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52342-FS3_L01.bam	SRR570818	@dbgap@:reads/SRP012006/SRS301302/SRX187140/SRR570818/SRR570818.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKKSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKKSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-11A-01D	DNA	EFO	SRS301302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A12	SRX187140		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52342-FS3_L01.bam	SRR570818	@dbgap@:reads/SRP012006/SRS301302/SRX187140/SRR570818/SRR570818.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKKSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKKSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-11A-01D	DNA	EFO	SRS301302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A12	SRX187140		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52342-FS3_L01.bam	SRR570818	@dbgap@:reads/SRP012006/SRS301302/SRX187140/SRR570818/SRR570818.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKKSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKKSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-11A-01D	DNA	EFO	SRS301302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A12	SRX187140		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52342-FS3_L01.bam	SRR570818	@dbgap@:reads/SRP012006/SRS301302/SRX187140/SRR570818/SRR570818.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-11A-01D	DNA	EFO	SRS301302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A12	SRX187140		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52342-FS3_L01.bam	SRR570818	@dbgap@:reads/SRP012006/SRS301302/SRX187140/SRR570818/SRR570818.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-11A-01D	DNA	EFO	SRS301302	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A12	SRX187140		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKKSE-11A-01D GS01073-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52342-FS3_L01.bam	SRR570818	@dbgap@:reads/SRP012006/SRS301302/SRX187140/SRR570818/SRR570818.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-01A-02D	DNA	EFO	SRS375192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H05	SRX204276		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54965-FS3_L01.bam	SRR616491	@dbgap@:reads/SRP012006/SRS375192/SRX204276/SRR616491/SRR616491.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKMUB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKMUB_NormalVsPrimary.png	4			
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-01A-02D	DNA	EFO	SRS375192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H05	SRX204276		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54965-FS3_L01.bam	SRR616491	@dbgap@:reads/SRP012006/SRS375192/SRX204276/SRR616491/SRR616491.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKMUB_NormalVsPrimary.png	4			
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-01A-02D	DNA	EFO	SRS375192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H05	SRX204276		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54965-FS3_L01.bam	SRR616491	@dbgap@:reads/SRP012006/SRS375192/SRX204276/SRR616491/SRR616491.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKMUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKMUB_NormalVsPrimary.png	4			
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-01A-02D	DNA	EFO	SRS375192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H05	SRX204276		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54965-FS3_L01.bam	SRR616491	@dbgap@:reads/SRP012006/SRS375192/SRX204276/SRR616491/SRR616491.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKMUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKMUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKMUB_NormalVsPrimary.maf.txt	3
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-01A-02D	DNA	EFO	SRS375192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H05	SRX204276		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54965-FS3_L01.bam	SRR616491	@dbgap@:reads/SRP012006/SRS375192/SRX204276/SRR616491/SRR616491.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKMUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKMUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-01A-02D	DNA	EFO	SRS375192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H05	SRX204276		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54965-FS3_L01.bam	SRR616491	@dbgap@:reads/SRP012006/SRS375192/SRX204276/SRR616491/SRR616491.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKMUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKMUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-01A-02D	DNA	EFO	SRS375192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H05	SRX204276		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54965-FS3_L01.bam	SRR616491	@dbgap@:reads/SRP012006/SRS375192/SRX204276/SRR616491/SRR616491.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKMUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKMUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-01A-02D	DNA	EFO	SRS375192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H05	SRX204276		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54965-FS3_L01.bam	SRR616491	@dbgap@:reads/SRP012006/SRS375192/SRX204276/SRR616491/SRR616491.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKMUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKMUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-01A-02D	DNA	EFO	SRS375192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H05	SRX204276		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54965-FS3_L01.bam	SRR616491	@dbgap@:reads/SRP012006/SRS375192/SRX204276/SRR616491/SRR616491.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKMUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKMUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-01A-02D	DNA	EFO	SRS375192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H05	SRX204276		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54965-FS3_L01.bam	SRR616491	@dbgap@:reads/SRP012006/SRS375192/SRX204276/SRR616491/SRR616491.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKMUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKMUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-01A-02D	DNA	EFO	SRS375192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H05	SRX204276		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54965-FS3_L01.bam	SRR616491	@dbgap@:reads/SRP012006/SRS375192/SRX204276/SRR616491/SRR616491.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKMUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKMUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-01A-02D	DNA	EFO	SRS375192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H05	SRX204276		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54965-FS3_L01.bam	SRR616491	@dbgap@:reads/SRP012006/SRS375192/SRX204276/SRR616491/SRR616491.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKMUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKMUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-01A-02D	DNA	EFO	SRS375192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H05	SRX204276		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54965-FS3_L01.bam	SRR616491	@dbgap@:reads/SRP012006/SRS375192/SRX204276/SRR616491/SRR616491.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-01A-02D	DNA	EFO	SRS375192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H05	SRX204276		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54965-FS3_L01.bam	SRR616491	@dbgap@:reads/SRP012006/SRS375192/SRX204276/SRR616491/SRR616491.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-01A-02D	DNA	EFO	SRS375192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H05	SRX204276		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-01A-02D GS01103-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54965-FS3_L01.bam	SRR616491	@dbgap@:reads/SRP012006/SRS375192/SRX204276/SRR616491/SRR616491.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-10A-01D	DNA	EFO	SRS375191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A06	SRX204275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54720-FS3_L01.bam	SRR616498	@dbgap@:reads/SRP012006/SRS375191/SRX204275/SRR616498/SRR616498.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKMUB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKMUB_NormalVsPrimary.png	4			
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-10A-01D	DNA	EFO	SRS375191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A06	SRX204275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54720-FS3_L01.bam	SRR616498	@dbgap@:reads/SRP012006/SRS375191/SRX204275/SRR616498/SRR616498.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKMUB_NormalVsPrimary.png	4			
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-10A-01D	DNA	EFO	SRS375191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A06	SRX204275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54720-FS3_L01.bam	SRR616498	@dbgap@:reads/SRP012006/SRS375191/SRX204275/SRR616498/SRR616498.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKMUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKMUB_NormalVsPrimary.png	4			
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-10A-01D	DNA	EFO	SRS375191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A06	SRX204275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54720-FS3_L01.bam	SRR616498	@dbgap@:reads/SRP012006/SRS375191/SRX204275/SRR616498/SRR616498.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKMUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKMUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKMUB_NormalVsPrimary.maf.txt	3
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-10A-01D	DNA	EFO	SRS375191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A06	SRX204275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54720-FS3_L01.bam	SRR616498	@dbgap@:reads/SRP012006/SRS375191/SRX204275/SRR616498/SRR616498.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKMUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKMUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-10A-01D	DNA	EFO	SRS375191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A06	SRX204275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54720-FS3_L01.bam	SRR616498	@dbgap@:reads/SRP012006/SRS375191/SRX204275/SRR616498/SRR616498.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKMUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKMUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-10A-01D	DNA	EFO	SRS375191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A06	SRX204275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54720-FS3_L01.bam	SRR616498	@dbgap@:reads/SRP012006/SRS375191/SRX204275/SRR616498/SRR616498.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKMUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKMUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-10A-01D	DNA	EFO	SRS375191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A06	SRX204275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54720-FS3_L01.bam	SRR616498	@dbgap@:reads/SRP012006/SRS375191/SRX204275/SRR616498/SRR616498.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKMUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKMUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-10A-01D	DNA	EFO	SRS375191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A06	SRX204275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54720-FS3_L01.bam	SRR616498	@dbgap@:reads/SRP012006/SRS375191/SRX204275/SRR616498/SRR616498.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKMUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKMUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-10A-01D	DNA	EFO	SRS375191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A06	SRX204275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54720-FS3_L01.bam	SRR616498	@dbgap@:reads/SRP012006/SRS375191/SRX204275/SRR616498/SRR616498.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKMUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKMUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-10A-01D	DNA	EFO	SRS375191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A06	SRX204275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54720-FS3_L01.bam	SRR616498	@dbgap@:reads/SRP012006/SRS375191/SRX204275/SRR616498/SRR616498.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKMUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKMUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-10A-01D	DNA	EFO	SRS375191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A06	SRX204275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54720-FS3_L01.bam	SRR616498	@dbgap@:reads/SRP012006/SRS375191/SRX204275/SRR616498/SRR616498.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKMUB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKMUB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-10A-01D	DNA	EFO	SRS375191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A06	SRX204275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54720-FS3_L01.bam	SRR616498	@dbgap@:reads/SRP012006/SRS375191/SRX204275/SRR616498/SRR616498.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-10A-01D	DNA	EFO	SRS375191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A06	SRX204275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54720-FS3_L01.bam	SRR616498	@dbgap@:reads/SRP012006/SRS375191/SRX204275/SRR616498/SRR616498.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-10A-01D	DNA	EFO	SRS375191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A06	SRX204275		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKMUB-10A-01D GS01103-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54720-FS3_L01.bam	SRR616498	@dbgap@:reads/SRP012006/SRS375191/SRX204275/SRR616498/SRR616498.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-01A-01D	DNA	EFO	SRS190189	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G01	SRX148449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43547-FS3_L01.bam	SRR497791	@dbgap@:reads/SRP012006/SRS190189/SRX148449/SRR497791/SRR497791.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKNAL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKNAL_NormalVsPrimary.png	4			
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-01A-01D	DNA	EFO	SRS190189	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G01	SRX148449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43547-FS3_L01.bam	SRR497791	@dbgap@:reads/SRP012006/SRS190189/SRX148449/SRR497791/SRR497791.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKNAL_NormalVsPrimary.png	4			
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-01A-01D	DNA	EFO	SRS190189	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G01	SRX148449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43547-FS3_L01.bam	SRR497791	@dbgap@:reads/SRP012006/SRS190189/SRX148449/SRR497791/SRR497791.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKNAL_NormalVsPrimary.png	4			
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-01A-01D	DNA	EFO	SRS190189	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G01	SRX148449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43547-FS3_L01.bam	SRR497791	@dbgap@:reads/SRP012006/SRS190189/SRX148449/SRR497791/SRR497791.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKNAL_NormalVsPrimary.maf.txt	3
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-01A-01D	DNA	EFO	SRS190189	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G01	SRX148449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43547-FS3_L01.bam	SRR497791	@dbgap@:reads/SRP012006/SRS190189/SRX148449/SRR497791/SRR497791.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-01A-01D	DNA	EFO	SRS190189	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G01	SRX148449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43547-FS3_L01.bam	SRR497791	@dbgap@:reads/SRP012006/SRS190189/SRX148449/SRR497791/SRR497791.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-01A-01D	DNA	EFO	SRS190189	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G01	SRX148449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43547-FS3_L01.bam	SRR497791	@dbgap@:reads/SRP012006/SRS190189/SRX148449/SRR497791/SRR497791.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-01A-01D	DNA	EFO	SRS190189	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G01	SRX148449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43547-FS3_L01.bam	SRR497791	@dbgap@:reads/SRP012006/SRS190189/SRX148449/SRR497791/SRR497791.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-01A-01D	DNA	EFO	SRS190189	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G01	SRX148449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43547-FS3_L01.bam	SRR497791	@dbgap@:reads/SRP012006/SRS190189/SRX148449/SRR497791/SRR497791.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-01A-01D	DNA	EFO	SRS190189	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G01	SRX148449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43547-FS3_L01.bam	SRR497791	@dbgap@:reads/SRP012006/SRS190189/SRX148449/SRR497791/SRR497791.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-01A-01D	DNA	EFO	SRS190189	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G01	SRX148449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43547-FS3_L01.bam	SRR497791	@dbgap@:reads/SRP012006/SRS190189/SRX148449/SRR497791/SRR497791.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-01A-01D	DNA	EFO	SRS190189	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G01	SRX148449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43547-FS3_L01.bam	SRR497791	@dbgap@:reads/SRP012006/SRS190189/SRX148449/SRR497791/SRR497791.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-01A-01D	DNA	EFO	SRS190189	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G01	SRX148449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43547-FS3_L01.bam	SRR497791	@dbgap@:reads/SRP012006/SRS190189/SRX148449/SRR497791/SRR497791.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-01A-01D	DNA	EFO	SRS190189	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G01	SRX148449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43547-FS3_L01.bam	SRR497791	@dbgap@:reads/SRP012006/SRS190189/SRX148449/SRR497791/SRR497791.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-01A-01D	DNA	EFO	SRS190189	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G01	SRX148449		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-01A-01D GS00941-CLS_G01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43547-FS3_L01.bam	SRR497791	@dbgap@:reads/SRP012006/SRS190189/SRX148449/SRR497791/SRR497791.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-10A-01D	DNA	EFO	SRS190190	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G03	SRX148448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42561-FS3_L01.bam	SRR497799	@dbgap@:reads/SRP012006/SRS190190/SRX148448/SRR497799/SRR497799.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKNAL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKNAL_NormalVsPrimary.png	4			
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-10A-01D	DNA	EFO	SRS190190	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G03	SRX148448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42561-FS3_L01.bam	SRR497799	@dbgap@:reads/SRP012006/SRS190190/SRX148448/SRR497799/SRR497799.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKNAL_NormalVsPrimary.png	4			
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-10A-01D	DNA	EFO	SRS190190	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G03	SRX148448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42561-FS3_L01.bam	SRR497799	@dbgap@:reads/SRP012006/SRS190190/SRX148448/SRR497799/SRR497799.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKNAL_NormalVsPrimary.png	4			
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-10A-01D	DNA	EFO	SRS190190	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G03	SRX148448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42561-FS3_L01.bam	SRR497799	@dbgap@:reads/SRP012006/SRS190190/SRX148448/SRR497799/SRR497799.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKNAL_NormalVsPrimary.maf.txt	3
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-10A-01D	DNA	EFO	SRS190190	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G03	SRX148448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42561-FS3_L01.bam	SRR497799	@dbgap@:reads/SRP012006/SRS190190/SRX148448/SRR497799/SRR497799.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-10A-01D	DNA	EFO	SRS190190	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G03	SRX148448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42561-FS3_L01.bam	SRR497799	@dbgap@:reads/SRP012006/SRS190190/SRX148448/SRR497799/SRR497799.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-10A-01D	DNA	EFO	SRS190190	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G03	SRX148448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42561-FS3_L01.bam	SRR497799	@dbgap@:reads/SRP012006/SRS190190/SRX148448/SRR497799/SRR497799.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-10A-01D	DNA	EFO	SRS190190	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G03	SRX148448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42561-FS3_L01.bam	SRR497799	@dbgap@:reads/SRP012006/SRS190190/SRX148448/SRR497799/SRR497799.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-10A-01D	DNA	EFO	SRS190190	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G03	SRX148448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42561-FS3_L01.bam	SRR497799	@dbgap@:reads/SRP012006/SRS190190/SRX148448/SRR497799/SRR497799.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-10A-01D	DNA	EFO	SRS190190	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G03	SRX148448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42561-FS3_L01.bam	SRR497799	@dbgap@:reads/SRP012006/SRS190190/SRX148448/SRR497799/SRR497799.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-10A-01D	DNA	EFO	SRS190190	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G03	SRX148448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42561-FS3_L01.bam	SRR497799	@dbgap@:reads/SRP012006/SRS190190/SRX148448/SRR497799/SRR497799.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-10A-01D	DNA	EFO	SRS190190	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G03	SRX148448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42561-FS3_L01.bam	SRR497799	@dbgap@:reads/SRP012006/SRS190190/SRX148448/SRR497799/SRR497799.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-10A-01D	DNA	EFO	SRS190190	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G03	SRX148448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42561-FS3_L01.bam	SRR497799	@dbgap@:reads/SRP012006/SRS190190/SRX148448/SRR497799/SRR497799.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-10A-01D	DNA	EFO	SRS190190	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G03	SRX148448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42561-FS3_L01.bam	SRR497799	@dbgap@:reads/SRP012006/SRS190190/SRX148448/SRR497799/SRR497799.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-10A-01D	DNA	EFO	SRS190190	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G03	SRX148448		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNAL-10A-01D GS00941-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42561-FS3_L01.bam	SRR497799	@dbgap@:reads/SRP012006/SRS190190/SRX148448/SRR497799/SRR497799.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-01A-01D	DNA	EFO	SRS118137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_D10	SRX130239		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19125-FS3_L01.bam	SRR446339	@dbgap@:reads/SRP012006/SRS118137/SRX130239/SRR446339/SRR446339.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKNRX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKNRX_NormalVsPrimary.png	4			
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-01A-01D	DNA	EFO	SRS118137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_D10	SRX130239		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19125-FS3_L01.bam	SRR446339	@dbgap@:reads/SRP012006/SRS118137/SRX130239/SRR446339/SRR446339.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKNRX_NormalVsPrimary.png	4			
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-01A-01D	DNA	EFO	SRS118137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_D10	SRX130239		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19125-FS3_L01.bam	SRR446339	@dbgap@:reads/SRP012006/SRS118137/SRX130239/SRR446339/SRR446339.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNRX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKNRX_NormalVsPrimary.png	4			
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-01A-01D	DNA	EFO	SRS118137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_D10	SRX130239		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19125-FS3_L01.bam	SRR446339	@dbgap@:reads/SRP012006/SRS118137/SRX130239/SRR446339/SRR446339.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNRX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNRX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKNRX_NormalVsPrimary.maf.txt	3
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-01A-01D	DNA	EFO	SRS118137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_D10	SRX130239		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19125-FS3_L01.bam	SRR446339	@dbgap@:reads/SRP012006/SRS118137/SRX130239/SRR446339/SRR446339.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNRX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNRX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-01A-01D	DNA	EFO	SRS118137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_D10	SRX130239		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19125-FS3_L01.bam	SRR446339	@dbgap@:reads/SRP012006/SRS118137/SRX130239/SRR446339/SRR446339.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNRX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNRX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-01A-01D	DNA	EFO	SRS118137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_D10	SRX130239		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19125-FS3_L01.bam	SRR446339	@dbgap@:reads/SRP012006/SRS118137/SRX130239/SRR446339/SRR446339.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNRX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNRX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-01A-01D	DNA	EFO	SRS118137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_D10	SRX130239		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19125-FS3_L01.bam	SRR446339	@dbgap@:reads/SRP012006/SRS118137/SRX130239/SRR446339/SRR446339.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNRX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNRX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-01A-01D	DNA	EFO	SRS118137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_D10	SRX130239		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19125-FS3_L01.bam	SRR446339	@dbgap@:reads/SRP012006/SRS118137/SRX130239/SRR446339/SRR446339.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNRX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNRX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-01A-01D	DNA	EFO	SRS118137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_D10	SRX130239		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19125-FS3_L01.bam	SRR446339	@dbgap@:reads/SRP012006/SRS118137/SRX130239/SRR446339/SRR446339.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNRX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNRX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-01A-01D	DNA	EFO	SRS118137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_D10	SRX130239		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19125-FS3_L01.bam	SRR446339	@dbgap@:reads/SRP012006/SRS118137/SRX130239/SRR446339/SRR446339.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNRX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNRX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-01A-01D	DNA	EFO	SRS118137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_D10	SRX130239		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19125-FS3_L01.bam	SRR446339	@dbgap@:reads/SRP012006/SRS118137/SRX130239/SRR446339/SRR446339.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNRX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNRX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-01A-01D	DNA	EFO	SRS118137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_D10	SRX130239		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19125-FS3_L01.bam	SRR446339	@dbgap@:reads/SRP012006/SRS118137/SRX130239/SRR446339/SRR446339.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-01A-01D	DNA	EFO	SRS118137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_D10	SRX130239		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19125-FS3_L01.bam	SRR446339	@dbgap@:reads/SRP012006/SRS118137/SRX130239/SRR446339/SRR446339.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-01A-01D	DNA	EFO	SRS118137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_D10	SRX130239		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-01A-01D GS00663-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19125-FS3_L01.bam	SRR446339	@dbgap@:reads/SRP012006/SRS118137/SRX130239/SRR446339/SRR446339.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-10A-01D	DNA	EFO	SRS118138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C12	SRX130238		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18955-FS3_L01.bam	SRR446347	@dbgap@:reads/SRP012006/SRS118138/SRX130238/SRR446347/SRR446347.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKNRX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKNRX_NormalVsPrimary.png	4			
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-10A-01D	DNA	EFO	SRS118138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C12	SRX130238		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18955-FS3_L01.bam	SRR446347	@dbgap@:reads/SRP012006/SRS118138/SRX130238/SRR446347/SRR446347.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKNRX_NormalVsPrimary.png	4			
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-10A-01D	DNA	EFO	SRS118138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C12	SRX130238		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18955-FS3_L01.bam	SRR446347	@dbgap@:reads/SRP012006/SRS118138/SRX130238/SRR446347/SRR446347.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNRX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKNRX_NormalVsPrimary.png	4			
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-10A-01D	DNA	EFO	SRS118138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C12	SRX130238		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18955-FS3_L01.bam	SRR446347	@dbgap@:reads/SRP012006/SRS118138/SRX130238/SRR446347/SRR446347.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNRX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNRX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKNRX_NormalVsPrimary.maf.txt	3
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-10A-01D	DNA	EFO	SRS118138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C12	SRX130238		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18955-FS3_L01.bam	SRR446347	@dbgap@:reads/SRP012006/SRS118138/SRX130238/SRR446347/SRR446347.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNRX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNRX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-10A-01D	DNA	EFO	SRS118138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C12	SRX130238		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18955-FS3_L01.bam	SRR446347	@dbgap@:reads/SRP012006/SRS118138/SRX130238/SRR446347/SRR446347.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNRX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNRX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-10A-01D	DNA	EFO	SRS118138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C12	SRX130238		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18955-FS3_L01.bam	SRR446347	@dbgap@:reads/SRP012006/SRS118138/SRX130238/SRR446347/SRR446347.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNRX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNRX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-10A-01D	DNA	EFO	SRS118138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C12	SRX130238		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18955-FS3_L01.bam	SRR446347	@dbgap@:reads/SRP012006/SRS118138/SRX130238/SRR446347/SRR446347.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNRX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNRX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-10A-01D	DNA	EFO	SRS118138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C12	SRX130238		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18955-FS3_L01.bam	SRR446347	@dbgap@:reads/SRP012006/SRS118138/SRX130238/SRR446347/SRR446347.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNRX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNRX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-10A-01D	DNA	EFO	SRS118138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C12	SRX130238		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18955-FS3_L01.bam	SRR446347	@dbgap@:reads/SRP012006/SRS118138/SRX130238/SRR446347/SRR446347.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNRX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNRX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-10A-01D	DNA	EFO	SRS118138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C12	SRX130238		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18955-FS3_L01.bam	SRR446347	@dbgap@:reads/SRP012006/SRS118138/SRX130238/SRR446347/SRR446347.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNRX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNRX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-10A-01D	DNA	EFO	SRS118138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C12	SRX130238		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18955-FS3_L01.bam	SRR446347	@dbgap@:reads/SRP012006/SRS118138/SRX130238/SRR446347/SRR446347.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNRX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNRX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-10A-01D	DNA	EFO	SRS118138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C12	SRX130238		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18955-FS3_L01.bam	SRR446347	@dbgap@:reads/SRP012006/SRS118138/SRX130238/SRR446347/SRR446347.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-10A-01D	DNA	EFO	SRS118138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C12	SRX130238		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18955-FS3_L01.bam	SRR446347	@dbgap@:reads/SRP012006/SRS118138/SRX130238/SRR446347/SRR446347.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-10A-01D	DNA	EFO	SRS118138	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS00663-CLS_C12	SRX130238		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNRX-10A-01D GS00663-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18955-FS3_L01.bam	SRR446347	@dbgap@:reads/SRP012006/SRS118138/SRX130238/SRR446347/SRR446347.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-01A-02D	DNA	EFO	SRS190191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B06	SRX204278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54853-FS3_L01.bam	SRR616505	@dbgap@:reads/SRP012006/SRS190191/SRX204278/SRR616505/SRR616505.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKNTW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKNTW_NormalVsPrimary.png	4			
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-01A-02D	DNA	EFO	SRS190191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B06	SRX204278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54853-FS3_L01.bam	SRR616505	@dbgap@:reads/SRP012006/SRS190191/SRX204278/SRR616505/SRR616505.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKNTW_NormalVsPrimary.png	4			
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-01A-02D	DNA	EFO	SRS190191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B06	SRX204278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54853-FS3_L01.bam	SRR616505	@dbgap@:reads/SRP012006/SRS190191/SRX204278/SRR616505/SRR616505.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKNTW_NormalVsPrimary.png	4			
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-01A-02D	DNA	EFO	SRS190191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B06	SRX204278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54853-FS3_L01.bam	SRR616505	@dbgap@:reads/SRP012006/SRS190191/SRX204278/SRR616505/SRR616505.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKNTW_NormalVsPrimary.maf.txt	3
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-01A-02D	DNA	EFO	SRS190191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B06	SRX204278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54853-FS3_L01.bam	SRR616505	@dbgap@:reads/SRP012006/SRS190191/SRX204278/SRR616505/SRR616505.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-01A-02D	DNA	EFO	SRS190191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B06	SRX204278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54853-FS3_L01.bam	SRR616505	@dbgap@:reads/SRP012006/SRS190191/SRX204278/SRR616505/SRR616505.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-01A-02D	DNA	EFO	SRS190191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B06	SRX204278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54853-FS3_L01.bam	SRR616505	@dbgap@:reads/SRP012006/SRS190191/SRX204278/SRR616505/SRR616505.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-01A-02D	DNA	EFO	SRS190191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B06	SRX204278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54853-FS3_L01.bam	SRR616505	@dbgap@:reads/SRP012006/SRS190191/SRX204278/SRR616505/SRR616505.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-01A-02D	DNA	EFO	SRS190191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B06	SRX204278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54853-FS3_L01.bam	SRR616505	@dbgap@:reads/SRP012006/SRS190191/SRX204278/SRR616505/SRR616505.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-01A-02D	DNA	EFO	SRS190191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B06	SRX204278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54853-FS3_L01.bam	SRR616505	@dbgap@:reads/SRP012006/SRS190191/SRX204278/SRR616505/SRR616505.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-01A-02D	DNA	EFO	SRS190191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B06	SRX204278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54853-FS3_L01.bam	SRR616505	@dbgap@:reads/SRP012006/SRS190191/SRX204278/SRR616505/SRR616505.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-01A-02D	DNA	EFO	SRS190191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B06	SRX204278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54853-FS3_L01.bam	SRR616505	@dbgap@:reads/SRP012006/SRS190191/SRX204278/SRR616505/SRR616505.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-01A-02D	DNA	EFO	SRS190191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B06	SRX204278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54853-FS3_L01.bam	SRR616505	@dbgap@:reads/SRP012006/SRS190191/SRX204278/SRR616505/SRR616505.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-01A-02D	DNA	EFO	SRS190191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B06	SRX204278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54853-FS3_L01.bam	SRR616505	@dbgap@:reads/SRP012006/SRS190191/SRX204278/SRR616505/SRR616505.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-01A-02D	DNA	EFO	SRS190191	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B06	SRX204278		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-01A-02D GS01103-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54853-FS3_L01.bam	SRR616505	@dbgap@:reads/SRP012006/SRS190191/SRX204278/SRR616505/SRR616505.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-10A-01D	DNA	EFO	SRS190192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C06	SRX204277		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54854-FS3_L01.bam	SRR616513	@dbgap@:reads/SRP012006/SRS190192/SRX204277/SRR616513/SRR616513.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKNTW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKNTW_NormalVsPrimary.png	4			
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-10A-01D	DNA	EFO	SRS190192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C06	SRX204277		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54854-FS3_L01.bam	SRR616513	@dbgap@:reads/SRP012006/SRS190192/SRX204277/SRR616513/SRR616513.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKNTW_NormalVsPrimary.png	4			
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-10A-01D	DNA	EFO	SRS190192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C06	SRX204277		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54854-FS3_L01.bam	SRR616513	@dbgap@:reads/SRP012006/SRS190192/SRX204277/SRR616513/SRR616513.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKNTW_NormalVsPrimary.png	4			
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-10A-01D	DNA	EFO	SRS190192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C06	SRX204277		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54854-FS3_L01.bam	SRR616513	@dbgap@:reads/SRP012006/SRS190192/SRX204277/SRR616513/SRR616513.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKNTW_NormalVsPrimary.maf.txt	3
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-10A-01D	DNA	EFO	SRS190192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C06	SRX204277		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54854-FS3_L01.bam	SRR616513	@dbgap@:reads/SRP012006/SRS190192/SRX204277/SRR616513/SRR616513.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-10A-01D	DNA	EFO	SRS190192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C06	SRX204277		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54854-FS3_L01.bam	SRR616513	@dbgap@:reads/SRP012006/SRS190192/SRX204277/SRR616513/SRR616513.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-10A-01D	DNA	EFO	SRS190192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C06	SRX204277		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54854-FS3_L01.bam	SRR616513	@dbgap@:reads/SRP012006/SRS190192/SRX204277/SRR616513/SRR616513.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-10A-01D	DNA	EFO	SRS190192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C06	SRX204277		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54854-FS3_L01.bam	SRR616513	@dbgap@:reads/SRP012006/SRS190192/SRX204277/SRR616513/SRR616513.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-10A-01D	DNA	EFO	SRS190192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C06	SRX204277		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54854-FS3_L01.bam	SRR616513	@dbgap@:reads/SRP012006/SRS190192/SRX204277/SRR616513/SRR616513.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-10A-01D	DNA	EFO	SRS190192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C06	SRX204277		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54854-FS3_L01.bam	SRR616513	@dbgap@:reads/SRP012006/SRS190192/SRX204277/SRR616513/SRR616513.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-10A-01D	DNA	EFO	SRS190192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C06	SRX204277		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54854-FS3_L01.bam	SRR616513	@dbgap@:reads/SRP012006/SRS190192/SRX204277/SRR616513/SRR616513.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-10A-01D	DNA	EFO	SRS190192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C06	SRX204277		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54854-FS3_L01.bam	SRR616513	@dbgap@:reads/SRP012006/SRS190192/SRX204277/SRR616513/SRR616513.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNTW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNTW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-10A-01D	DNA	EFO	SRS190192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C06	SRX204277		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54854-FS3_L01.bam	SRR616513	@dbgap@:reads/SRP012006/SRS190192/SRX204277/SRR616513/SRR616513.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-10A-01D	DNA	EFO	SRS190192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C06	SRX204277		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54854-FS3_L01.bam	SRR616513	@dbgap@:reads/SRP012006/SRS190192/SRX204277/SRR616513/SRR616513.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-10A-01D	DNA	EFO	SRS190192	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_C06	SRX204277		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNTW-10A-01D GS01103-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54854-FS3_L01.bam	SRR616513	@dbgap@:reads/SRP012006/SRS190192/SRX204277/SRR616513/SRR616513.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-01A-01D	DNA	EFO	SRS190193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F04	SRX206480		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56007-FS3_L01.bam	SRR620305	@dbgap@:reads/SRP012006/SRS190193/SRX206480/SRR620305/SRR620305.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKNXS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKNXS_NormalVsPrimary.png	4			
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-01A-01D	DNA	EFO	SRS190193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F04	SRX206480		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56007-FS3_L01.bam	SRR620305	@dbgap@:reads/SRP012006/SRS190193/SRX206480/SRR620305/SRR620305.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKNXS_NormalVsPrimary.png	4			
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-01A-01D	DNA	EFO	SRS190193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F04	SRX206480		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56007-FS3_L01.bam	SRR620305	@dbgap@:reads/SRP012006/SRS190193/SRX206480/SRR620305/SRR620305.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNXS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKNXS_NormalVsPrimary.png	4			
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-01A-01D	DNA	EFO	SRS190193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F04	SRX206480		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56007-FS3_L01.bam	SRR620305	@dbgap@:reads/SRP012006/SRS190193/SRX206480/SRR620305/SRR620305.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNXS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNXS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKNXS_NormalVsPrimary.maf.txt	3
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-01A-01D	DNA	EFO	SRS190193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F04	SRX206480		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56007-FS3_L01.bam	SRR620305	@dbgap@:reads/SRP012006/SRS190193/SRX206480/SRR620305/SRR620305.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNXS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNXS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-01A-01D	DNA	EFO	SRS190193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F04	SRX206480		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56007-FS3_L01.bam	SRR620305	@dbgap@:reads/SRP012006/SRS190193/SRX206480/SRR620305/SRR620305.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNXS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNXS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-01A-01D	DNA	EFO	SRS190193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F04	SRX206480		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56007-FS3_L01.bam	SRR620305	@dbgap@:reads/SRP012006/SRS190193/SRX206480/SRR620305/SRR620305.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNXS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNXS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-01A-01D	DNA	EFO	SRS190193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F04	SRX206480		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56007-FS3_L01.bam	SRR620305	@dbgap@:reads/SRP012006/SRS190193/SRX206480/SRR620305/SRR620305.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNXS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNXS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-01A-01D	DNA	EFO	SRS190193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F04	SRX206480		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56007-FS3_L01.bam	SRR620305	@dbgap@:reads/SRP012006/SRS190193/SRX206480/SRR620305/SRR620305.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNXS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNXS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-01A-01D	DNA	EFO	SRS190193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F04	SRX206480		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56007-FS3_L01.bam	SRR620305	@dbgap@:reads/SRP012006/SRS190193/SRX206480/SRR620305/SRR620305.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNXS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNXS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-01A-01D	DNA	EFO	SRS190193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F04	SRX206480		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56007-FS3_L01.bam	SRR620305	@dbgap@:reads/SRP012006/SRS190193/SRX206480/SRR620305/SRR620305.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNXS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNXS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-01A-01D	DNA	EFO	SRS190193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F04	SRX206480		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56007-FS3_L01.bam	SRR620305	@dbgap@:reads/SRP012006/SRS190193/SRX206480/SRR620305/SRR620305.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNXS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNXS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-01A-01D	DNA	EFO	SRS190193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F04	SRX206480		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56007-FS3_L01.bam	SRR620305	@dbgap@:reads/SRP012006/SRS190193/SRX206480/SRR620305/SRR620305.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-01A-01D	DNA	EFO	SRS190193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F04	SRX206480		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56007-FS3_L01.bam	SRR620305	@dbgap@:reads/SRP012006/SRS190193/SRX206480/SRR620305/SRR620305.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-01A-01D	DNA	EFO	SRS190193	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F04	SRX206480		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-01A-01D GS01103-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56007-FS3_L01.bam	SRR620305	@dbgap@:reads/SRP012006/SRS190193/SRX206480/SRR620305/SRR620305.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-10A-01D	DNA	EFO	SRS190194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_E02	SRX206479		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56070-FS3_L01.bam	SRR620313	@dbgap@:reads/SRP012006/SRS190194/SRX206479/SRR620313/SRR620313.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKNXS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKNXS_NormalVsPrimary.png	4			
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-10A-01D	DNA	EFO	SRS190194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_E02	SRX206479		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56070-FS3_L01.bam	SRR620313	@dbgap@:reads/SRP012006/SRS190194/SRX206479/SRR620313/SRR620313.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKNXS_NormalVsPrimary.png	4			
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-10A-01D	DNA	EFO	SRS190194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_E02	SRX206479		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56070-FS3_L01.bam	SRR620313	@dbgap@:reads/SRP012006/SRS190194/SRX206479/SRR620313/SRR620313.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNXS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKNXS_NormalVsPrimary.png	4			
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-10A-01D	DNA	EFO	SRS190194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_E02	SRX206479		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56070-FS3_L01.bam	SRR620313	@dbgap@:reads/SRP012006/SRS190194/SRX206479/SRR620313/SRR620313.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNXS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNXS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKNXS_NormalVsPrimary.maf.txt	3
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-10A-01D	DNA	EFO	SRS190194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_E02	SRX206479		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56070-FS3_L01.bam	SRR620313	@dbgap@:reads/SRP012006/SRS190194/SRX206479/SRR620313/SRR620313.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNXS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNXS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-10A-01D	DNA	EFO	SRS190194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_E02	SRX206479		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56070-FS3_L01.bam	SRR620313	@dbgap@:reads/SRP012006/SRS190194/SRX206479/SRR620313/SRR620313.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNXS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNXS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-10A-01D	DNA	EFO	SRS190194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_E02	SRX206479		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56070-FS3_L01.bam	SRR620313	@dbgap@:reads/SRP012006/SRS190194/SRX206479/SRR620313/SRR620313.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNXS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNXS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-10A-01D	DNA	EFO	SRS190194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_E02	SRX206479		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56070-FS3_L01.bam	SRR620313	@dbgap@:reads/SRP012006/SRS190194/SRX206479/SRR620313/SRR620313.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNXS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNXS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-10A-01D	DNA	EFO	SRS190194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_E02	SRX206479		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56070-FS3_L01.bam	SRR620313	@dbgap@:reads/SRP012006/SRS190194/SRX206479/SRR620313/SRR620313.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNXS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNXS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-10A-01D	DNA	EFO	SRS190194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_E02	SRX206479		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56070-FS3_L01.bam	SRR620313	@dbgap@:reads/SRP012006/SRS190194/SRX206479/SRR620313/SRR620313.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNXS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNXS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-10A-01D	DNA	EFO	SRS190194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_E02	SRX206479		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56070-FS3_L01.bam	SRR620313	@dbgap@:reads/SRP012006/SRS190194/SRX206479/SRR620313/SRR620313.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNXS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNXS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-10A-01D	DNA	EFO	SRS190194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_E02	SRX206479		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56070-FS3_L01.bam	SRR620313	@dbgap@:reads/SRP012006/SRS190194/SRX206479/SRR620313/SRR620313.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKNXS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKNXS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-10A-01D	DNA	EFO	SRS190194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_E02	SRX206479		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56070-FS3_L01.bam	SRR620313	@dbgap@:reads/SRP012006/SRS190194/SRX206479/SRR620313/SRR620313.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-10A-01D	DNA	EFO	SRS190194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_E02	SRX206479		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56070-FS3_L01.bam	SRR620313	@dbgap@:reads/SRP012006/SRS190194/SRX206479/SRR620313/SRR620313.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-10A-01D	DNA	EFO	SRS190194	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01114-CLS_E02	SRX206479		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKNXS-10A-01D GS01114-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56070-FS3_L01.bam	SRR620313	@dbgap@:reads/SRP012006/SRS190194/SRX206479/SRR620313/SRR620313.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-01A-01D	DNA	EFO	SRS190197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D07	SRX226395		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55236-FS3_L03.bam	SRR677323	@dbgap@:reads/SRP012006/SRS190197/SRX226395/SRR677323/SRR677323.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKRVH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKRVH_NormalVsPrimary.png	4			
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-01A-01D	DNA	EFO	SRS190197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D07	SRX226395		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55236-FS3_L03.bam	SRR677323	@dbgap@:reads/SRP012006/SRS190197/SRX226395/SRR677323/SRR677323.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKRVH_NormalVsPrimary.png	4			
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-01A-01D	DNA	EFO	SRS190197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D07	SRX226395		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55236-FS3_L03.bam	SRR677323	@dbgap@:reads/SRP012006/SRS190197/SRX226395/SRR677323/SRR677323.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRVH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKRVH_NormalVsPrimary.png	4			
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-01A-01D	DNA	EFO	SRS190197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D07	SRX226395		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55236-FS3_L03.bam	SRR677323	@dbgap@:reads/SRP012006/SRS190197/SRX226395/SRR677323/SRR677323.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRVH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRVH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKRVH_NormalVsPrimary.maf.txt	3
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-01A-01D	DNA	EFO	SRS190197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D07	SRX226395		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55236-FS3_L03.bam	SRR677323	@dbgap@:reads/SRP012006/SRS190197/SRX226395/SRR677323/SRR677323.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRVH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRVH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-01A-01D	DNA	EFO	SRS190197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D07	SRX226395		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55236-FS3_L03.bam	SRR677323	@dbgap@:reads/SRP012006/SRS190197/SRX226395/SRR677323/SRR677323.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRVH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRVH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-01A-01D	DNA	EFO	SRS190197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D07	SRX226395		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55236-FS3_L03.bam	SRR677323	@dbgap@:reads/SRP012006/SRS190197/SRX226395/SRR677323/SRR677323.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRVH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRVH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-01A-01D	DNA	EFO	SRS190197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D07	SRX226395		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55236-FS3_L03.bam	SRR677323	@dbgap@:reads/SRP012006/SRS190197/SRX226395/SRR677323/SRR677323.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRVH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRVH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-01A-01D	DNA	EFO	SRS190197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D07	SRX226395		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55236-FS3_L03.bam	SRR677323	@dbgap@:reads/SRP012006/SRS190197/SRX226395/SRR677323/SRR677323.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRVH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRVH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-01A-01D	DNA	EFO	SRS190197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D07	SRX226395		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55236-FS3_L03.bam	SRR677323	@dbgap@:reads/SRP012006/SRS190197/SRX226395/SRR677323/SRR677323.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRVH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRVH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-01A-01D	DNA	EFO	SRS190197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D07	SRX226395		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55236-FS3_L03.bam	SRR677323	@dbgap@:reads/SRP012006/SRS190197/SRX226395/SRR677323/SRR677323.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRVH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRVH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-01A-01D	DNA	EFO	SRS190197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D07	SRX226395		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55236-FS3_L03.bam	SRR677323	@dbgap@:reads/SRP012006/SRS190197/SRX226395/SRR677323/SRR677323.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRVH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRVH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-01A-01D	DNA	EFO	SRS190197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D07	SRX226395		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55236-FS3_L03.bam	SRR677323	@dbgap@:reads/SRP012006/SRS190197/SRX226395/SRR677323/SRR677323.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-01A-01D	DNA	EFO	SRS190197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D07	SRX226395		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55236-FS3_L03.bam	SRR677323	@dbgap@:reads/SRP012006/SRS190197/SRX226395/SRR677323/SRR677323.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-01A-01D	DNA	EFO	SRS190197	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_D07	SRX226395		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-01A-01D GS01103-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55236-FS3_L03.bam	SRR677323	@dbgap@:reads/SRP012006/SRS190197/SRX226395/SRR677323/SRR677323.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-10A-01D	DNA	EFO	SRS190198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01129-CLS_C02	SRX226394		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57918-FS3_L01.bam	SRR677329	@dbgap@:reads/SRP012006/SRS190198/SRX226394/SRR677329/SRR677329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKRVH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKRVH_NormalVsPrimary.png	4			
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-10A-01D	DNA	EFO	SRS190198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01129-CLS_C02	SRX226394		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57918-FS3_L01.bam	SRR677329	@dbgap@:reads/SRP012006/SRS190198/SRX226394/SRR677329/SRR677329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKRVH_NormalVsPrimary.png	4			
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-10A-01D	DNA	EFO	SRS190198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01129-CLS_C02	SRX226394		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57918-FS3_L01.bam	SRR677329	@dbgap@:reads/SRP012006/SRS190198/SRX226394/SRR677329/SRR677329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRVH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKRVH_NormalVsPrimary.png	4			
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-10A-01D	DNA	EFO	SRS190198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01129-CLS_C02	SRX226394		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57918-FS3_L01.bam	SRR677329	@dbgap@:reads/SRP012006/SRS190198/SRX226394/SRR677329/SRR677329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRVH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRVH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKRVH_NormalVsPrimary.maf.txt	3
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-10A-01D	DNA	EFO	SRS190198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01129-CLS_C02	SRX226394		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57918-FS3_L01.bam	SRR677329	@dbgap@:reads/SRP012006/SRS190198/SRX226394/SRR677329/SRR677329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRVH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRVH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-10A-01D	DNA	EFO	SRS190198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01129-CLS_C02	SRX226394		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57918-FS3_L01.bam	SRR677329	@dbgap@:reads/SRP012006/SRS190198/SRX226394/SRR677329/SRR677329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRVH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRVH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-10A-01D	DNA	EFO	SRS190198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01129-CLS_C02	SRX226394		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57918-FS3_L01.bam	SRR677329	@dbgap@:reads/SRP012006/SRS190198/SRX226394/SRR677329/SRR677329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRVH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRVH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-10A-01D	DNA	EFO	SRS190198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01129-CLS_C02	SRX226394		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57918-FS3_L01.bam	SRR677329	@dbgap@:reads/SRP012006/SRS190198/SRX226394/SRR677329/SRR677329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRVH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRVH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-10A-01D	DNA	EFO	SRS190198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01129-CLS_C02	SRX226394		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57918-FS3_L01.bam	SRR677329	@dbgap@:reads/SRP012006/SRS190198/SRX226394/SRR677329/SRR677329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRVH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRVH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-10A-01D	DNA	EFO	SRS190198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01129-CLS_C02	SRX226394		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57918-FS3_L01.bam	SRR677329	@dbgap@:reads/SRP012006/SRS190198/SRX226394/SRR677329/SRR677329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRVH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRVH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-10A-01D	DNA	EFO	SRS190198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01129-CLS_C02	SRX226394		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57918-FS3_L01.bam	SRR677329	@dbgap@:reads/SRP012006/SRS190198/SRX226394/SRR677329/SRR677329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRVH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRVH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-10A-01D	DNA	EFO	SRS190198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01129-CLS_C02	SRX226394		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57918-FS3_L01.bam	SRR677329	@dbgap@:reads/SRP012006/SRS190198/SRX226394/SRR677329/SRR677329.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRVH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRVH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-10A-01D	DNA	EFO	SRS190198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01129-CLS_C02	SRX226394		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57918-FS3_L01.bam	SRR677329	@dbgap@:reads/SRP012006/SRS190198/SRX226394/SRR677329/SRR677329.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-10A-01D	DNA	EFO	SRS190198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01129-CLS_C02	SRX226394		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57918-FS3_L01.bam	SRR677329	@dbgap@:reads/SRP012006/SRS190198/SRX226394/SRR677329/SRR677329.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-10A-01D	DNA	EFO	SRS190198	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS01129-CLS_C02	SRX226394		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRVH-10A-01D GS01129-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57918-FS3_L01.bam	SRR677329	@dbgap@:reads/SRP012006/SRS190198/SRX226394/SRR677329/SRR677329.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-01A-01D	DNA	EFO	SRS301303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D09	SRX202113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51994-FS3_L01.bam	SRR610230	@dbgap@:reads/SRP012006/SRS301303/SRX202113/SRR610230/SRR610230.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKRZW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKRZW_NormalVsPrimary.png	4			
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-01A-01D	DNA	EFO	SRS301303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D09	SRX202113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51994-FS3_L01.bam	SRR610230	@dbgap@:reads/SRP012006/SRS301303/SRX202113/SRR610230/SRR610230.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKRZW_NormalVsPrimary.png	4			
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-01A-01D	DNA	EFO	SRS301303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D09	SRX202113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51994-FS3_L01.bam	SRR610230	@dbgap@:reads/SRP012006/SRS301303/SRX202113/SRR610230/SRR610230.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKRZW_NormalVsPrimary.png	4			
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-01A-01D	DNA	EFO	SRS301303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D09	SRX202113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51994-FS3_L01.bam	SRR610230	@dbgap@:reads/SRP012006/SRS301303/SRX202113/SRR610230/SRR610230.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKRZW_NormalVsPrimary.maf.txt	3
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-01A-01D	DNA	EFO	SRS301303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D09	SRX202113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51994-FS3_L01.bam	SRR610230	@dbgap@:reads/SRP012006/SRS301303/SRX202113/SRR610230/SRR610230.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-01A-01D	DNA	EFO	SRS301303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D09	SRX202113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51994-FS3_L01.bam	SRR610230	@dbgap@:reads/SRP012006/SRS301303/SRX202113/SRR610230/SRR610230.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-01A-01D	DNA	EFO	SRS301303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D09	SRX202113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51994-FS3_L01.bam	SRR610230	@dbgap@:reads/SRP012006/SRS301303/SRX202113/SRR610230/SRR610230.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-01A-01D	DNA	EFO	SRS301303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D09	SRX202113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51994-FS3_L01.bam	SRR610230	@dbgap@:reads/SRP012006/SRS301303/SRX202113/SRR610230/SRR610230.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-01A-01D	DNA	EFO	SRS301303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D09	SRX202113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51994-FS3_L01.bam	SRR610230	@dbgap@:reads/SRP012006/SRS301303/SRX202113/SRR610230/SRR610230.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-01A-01D	DNA	EFO	SRS301303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D09	SRX202113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51994-FS3_L01.bam	SRR610230	@dbgap@:reads/SRP012006/SRS301303/SRX202113/SRR610230/SRR610230.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-01A-01D	DNA	EFO	SRS301303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D09	SRX202113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51994-FS3_L01.bam	SRR610230	@dbgap@:reads/SRP012006/SRS301303/SRX202113/SRR610230/SRR610230.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-01A-01D	DNA	EFO	SRS301303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D09	SRX202113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51994-FS3_L01.bam	SRR610230	@dbgap@:reads/SRP012006/SRS301303/SRX202113/SRR610230/SRR610230.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-01A-01D	DNA	EFO	SRS301303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D09	SRX202113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51994-FS3_L01.bam	SRR610230	@dbgap@:reads/SRP012006/SRS301303/SRX202113/SRR610230/SRR610230.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-01A-01D	DNA	EFO	SRS301303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D09	SRX202113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51994-FS3_L01.bam	SRR610230	@dbgap@:reads/SRP012006/SRS301303/SRX202113/SRR610230/SRR610230.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-01A-01D	DNA	EFO	SRS301303	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D09	SRX202113		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-01A-01D GS01073-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51994-FS3_L01.bam	SRR610230	@dbgap@:reads/SRP012006/SRS301303/SRX202113/SRR610230/SRR610230.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-11A-01D	DNA	EFO	SRS373608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B12	SRX202112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52120-FS3_L01.bam	SRR610238	@dbgap@:reads/SRP012006/SRS373608/SRX202112/SRR610238/SRR610238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKRZW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKRZW_NormalVsPrimary.png	4			
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-11A-01D	DNA	EFO	SRS373608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B12	SRX202112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52120-FS3_L01.bam	SRR610238	@dbgap@:reads/SRP012006/SRS373608/SRX202112/SRR610238/SRR610238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKRZW_NormalVsPrimary.png	4			
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-11A-01D	DNA	EFO	SRS373608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B12	SRX202112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52120-FS3_L01.bam	SRR610238	@dbgap@:reads/SRP012006/SRS373608/SRX202112/SRR610238/SRR610238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKRZW_NormalVsPrimary.png	4			
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-11A-01D	DNA	EFO	SRS373608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B12	SRX202112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52120-FS3_L01.bam	SRR610238	@dbgap@:reads/SRP012006/SRS373608/SRX202112/SRR610238/SRR610238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKRZW_NormalVsPrimary.maf.txt	3
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-11A-01D	DNA	EFO	SRS373608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B12	SRX202112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52120-FS3_L01.bam	SRR610238	@dbgap@:reads/SRP012006/SRS373608/SRX202112/SRR610238/SRR610238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-11A-01D	DNA	EFO	SRS373608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B12	SRX202112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52120-FS3_L01.bam	SRR610238	@dbgap@:reads/SRP012006/SRS373608/SRX202112/SRR610238/SRR610238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-11A-01D	DNA	EFO	SRS373608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B12	SRX202112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52120-FS3_L01.bam	SRR610238	@dbgap@:reads/SRP012006/SRS373608/SRX202112/SRR610238/SRR610238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-11A-01D	DNA	EFO	SRS373608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B12	SRX202112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52120-FS3_L01.bam	SRR610238	@dbgap@:reads/SRP012006/SRS373608/SRX202112/SRR610238/SRR610238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-11A-01D	DNA	EFO	SRS373608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B12	SRX202112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52120-FS3_L01.bam	SRR610238	@dbgap@:reads/SRP012006/SRS373608/SRX202112/SRR610238/SRR610238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-11A-01D	DNA	EFO	SRS373608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B12	SRX202112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52120-FS3_L01.bam	SRR610238	@dbgap@:reads/SRP012006/SRS373608/SRX202112/SRR610238/SRR610238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-11A-01D	DNA	EFO	SRS373608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B12	SRX202112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52120-FS3_L01.bam	SRR610238	@dbgap@:reads/SRP012006/SRS373608/SRX202112/SRR610238/SRR610238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-11A-01D	DNA	EFO	SRS373608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B12	SRX202112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52120-FS3_L01.bam	SRR610238	@dbgap@:reads/SRP012006/SRS373608/SRX202112/SRR610238/SRR610238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKRZW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKRZW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-11A-01D	DNA	EFO	SRS373608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B12	SRX202112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52120-FS3_L01.bam	SRR610238	@dbgap@:reads/SRP012006/SRS373608/SRX202112/SRR610238/SRR610238.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-11A-01D	DNA	EFO	SRS373608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B12	SRX202112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52120-FS3_L01.bam	SRR610238	@dbgap@:reads/SRP012006/SRS373608/SRX202112/SRR610238/SRR610238.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-11A-01D	DNA	EFO	SRS373608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_B12	SRX202112		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKRZW-11A-01D GS01073-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52120-FS3_L01.bam	SRR610238	@dbgap@:reads/SRP012006/SRS373608/SRX202112/SRR610238/SRR610238.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-01A-01D	DNA	EFO	SRS301305	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E09	SRX202111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51996-FS3_L01.bam	SRR610214	@dbgap@:reads/SRP012006/SRS301305/SRX202111/SRR610214/SRR610214.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKSCC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKSCC_NormalVsPrimary.png	4			
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-01A-01D	DNA	EFO	SRS301305	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E09	SRX202111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51996-FS3_L01.bam	SRR610214	@dbgap@:reads/SRP012006/SRS301305/SRX202111/SRR610214/SRR610214.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKSCC_NormalVsPrimary.png	4			
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-01A-01D	DNA	EFO	SRS301305	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E09	SRX202111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51996-FS3_L01.bam	SRR610214	@dbgap@:reads/SRP012006/SRS301305/SRX202111/SRR610214/SRR610214.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKSCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKSCC_NormalVsPrimary.png	4			
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-01A-01D	DNA	EFO	SRS301305	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E09	SRX202111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51996-FS3_L01.bam	SRR610214	@dbgap@:reads/SRP012006/SRS301305/SRX202111/SRR610214/SRR610214.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKSCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKSCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKSCC_NormalVsPrimary.maf.txt	3
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-01A-01D	DNA	EFO	SRS301305	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E09	SRX202111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51996-FS3_L01.bam	SRR610214	@dbgap@:reads/SRP012006/SRS301305/SRX202111/SRR610214/SRR610214.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKSCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKSCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-01A-01D	DNA	EFO	SRS301305	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E09	SRX202111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51996-FS3_L01.bam	SRR610214	@dbgap@:reads/SRP012006/SRS301305/SRX202111/SRR610214/SRR610214.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKSCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKSCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-01A-01D	DNA	EFO	SRS301305	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E09	SRX202111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51996-FS3_L01.bam	SRR610214	@dbgap@:reads/SRP012006/SRS301305/SRX202111/SRR610214/SRR610214.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKSCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKSCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-01A-01D	DNA	EFO	SRS301305	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E09	SRX202111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51996-FS3_L01.bam	SRR610214	@dbgap@:reads/SRP012006/SRS301305/SRX202111/SRR610214/SRR610214.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKSCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKSCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-01A-01D	DNA	EFO	SRS301305	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E09	SRX202111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51996-FS3_L01.bam	SRR610214	@dbgap@:reads/SRP012006/SRS301305/SRX202111/SRR610214/SRR610214.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKSCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKSCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-01A-01D	DNA	EFO	SRS301305	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E09	SRX202111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51996-FS3_L01.bam	SRR610214	@dbgap@:reads/SRP012006/SRS301305/SRX202111/SRR610214/SRR610214.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKSCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKSCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-01A-01D	DNA	EFO	SRS301305	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E09	SRX202111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51996-FS3_L01.bam	SRR610214	@dbgap@:reads/SRP012006/SRS301305/SRX202111/SRR610214/SRR610214.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKSCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKSCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-01A-01D	DNA	EFO	SRS301305	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E09	SRX202111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51996-FS3_L01.bam	SRR610214	@dbgap@:reads/SRP012006/SRS301305/SRX202111/SRR610214/SRR610214.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKSCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKSCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-01A-01D	DNA	EFO	SRS301305	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E09	SRX202111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51996-FS3_L01.bam	SRR610214	@dbgap@:reads/SRP012006/SRS301305/SRX202111/SRR610214/SRR610214.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-01A-01D	DNA	EFO	SRS301305	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E09	SRX202111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51996-FS3_L01.bam	SRR610214	@dbgap@:reads/SRP012006/SRS301305/SRX202111/SRR610214/SRR610214.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-01A-01D	DNA	EFO	SRS301305	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E09	SRX202111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-01A-01D GS01073-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51996-FS3_L01.bam	SRR610214	@dbgap@:reads/SRP012006/SRS301305/SRX202111/SRR610214/SRR610214.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-11A-01D	DNA	EFO	SRS373607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C12	SRX202110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51995-FS3_L01.bam	SRR610222	@dbgap@:reads/SRP012006/SRS373607/SRX202110/SRR610222/SRR610222.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKSCC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKSCC_NormalVsPrimary.png	4			
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-11A-01D	DNA	EFO	SRS373607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C12	SRX202110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51995-FS3_L01.bam	SRR610222	@dbgap@:reads/SRP012006/SRS373607/SRX202110/SRR610222/SRR610222.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKSCC_NormalVsPrimary.png	4			
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-11A-01D	DNA	EFO	SRS373607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C12	SRX202110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51995-FS3_L01.bam	SRR610222	@dbgap@:reads/SRP012006/SRS373607/SRX202110/SRR610222/SRR610222.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKSCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKSCC_NormalVsPrimary.png	4			
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-11A-01D	DNA	EFO	SRS373607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C12	SRX202110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51995-FS3_L01.bam	SRR610222	@dbgap@:reads/SRP012006/SRS373607/SRX202110/SRR610222/SRR610222.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKSCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKSCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKSCC_NormalVsPrimary.maf.txt	3
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-11A-01D	DNA	EFO	SRS373607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C12	SRX202110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51995-FS3_L01.bam	SRR610222	@dbgap@:reads/SRP012006/SRS373607/SRX202110/SRR610222/SRR610222.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKSCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKSCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-11A-01D	DNA	EFO	SRS373607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C12	SRX202110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51995-FS3_L01.bam	SRR610222	@dbgap@:reads/SRP012006/SRS373607/SRX202110/SRR610222/SRR610222.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKSCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKSCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-11A-01D	DNA	EFO	SRS373607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C12	SRX202110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51995-FS3_L01.bam	SRR610222	@dbgap@:reads/SRP012006/SRS373607/SRX202110/SRR610222/SRR610222.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKSCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKSCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-11A-01D	DNA	EFO	SRS373607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C12	SRX202110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51995-FS3_L01.bam	SRR610222	@dbgap@:reads/SRP012006/SRS373607/SRX202110/SRR610222/SRR610222.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKSCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKSCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-11A-01D	DNA	EFO	SRS373607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C12	SRX202110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51995-FS3_L01.bam	SRR610222	@dbgap@:reads/SRP012006/SRS373607/SRX202110/SRR610222/SRR610222.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKSCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKSCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-11A-01D	DNA	EFO	SRS373607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C12	SRX202110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51995-FS3_L01.bam	SRR610222	@dbgap@:reads/SRP012006/SRS373607/SRX202110/SRR610222/SRR610222.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKSCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKSCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-11A-01D	DNA	EFO	SRS373607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C12	SRX202110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51995-FS3_L01.bam	SRR610222	@dbgap@:reads/SRP012006/SRS373607/SRX202110/SRR610222/SRR610222.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKSCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKSCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-11A-01D	DNA	EFO	SRS373607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C12	SRX202110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51995-FS3_L01.bam	SRR610222	@dbgap@:reads/SRP012006/SRS373607/SRX202110/SRR610222/SRR610222.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKSCC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKSCC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-11A-01D	DNA	EFO	SRS373607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C12	SRX202110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51995-FS3_L01.bam	SRR610222	@dbgap@:reads/SRP012006/SRS373607/SRX202110/SRR610222/SRR610222.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-11A-01D	DNA	EFO	SRS373607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C12	SRX202110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51995-FS3_L01.bam	SRR610222	@dbgap@:reads/SRP012006/SRS373607/SRX202110/SRR610222/SRR610222.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-11A-01D	DNA	EFO	SRS373607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_C12	SRX202110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKSCC-11A-01D GS01073-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51995-FS3_L01.bam	SRR610222	@dbgap@:reads/SRP012006/SRS373607/SRX202110/SRR610222/SRR610222.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-01A-01D	DNA	EFO	SRS190201	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H04	SRX204266		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L01.bam	SRR616419	@dbgap@:reads/SRP012006/SRS190201/SRX204266/SRR616419/SRR616419.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKUIT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKUIT_NormalVsPrimary.png	4			
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-01A-01D	DNA	EFO	SRS190201	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H04	SRX204266		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L01.bam	SRR616419	@dbgap@:reads/SRP012006/SRS190201/SRX204266/SRR616419/SRR616419.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKUIT_NormalVsPrimary.png	4			
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-01A-01D	DNA	EFO	SRS190201	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H04	SRX204266		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L01.bam	SRR616419	@dbgap@:reads/SRP012006/SRS190201/SRX204266/SRR616419/SRR616419.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKUIT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKUIT_NormalVsPrimary.png	4			
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-01A-01D	DNA	EFO	SRS190201	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H04	SRX204266		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L01.bam	SRR616419	@dbgap@:reads/SRP012006/SRS190201/SRX204266/SRR616419/SRR616419.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKUIT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKUIT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKUIT_NormalVsPrimary.maf.txt	3
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-01A-01D	DNA	EFO	SRS190201	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H04	SRX204266		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L01.bam	SRR616419	@dbgap@:reads/SRP012006/SRS190201/SRX204266/SRR616419/SRR616419.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKUIT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKUIT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-01A-01D	DNA	EFO	SRS190201	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H04	SRX204266		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L01.bam	SRR616419	@dbgap@:reads/SRP012006/SRS190201/SRX204266/SRR616419/SRR616419.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKUIT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKUIT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-01A-01D	DNA	EFO	SRS190201	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H04	SRX204266		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L01.bam	SRR616419	@dbgap@:reads/SRP012006/SRS190201/SRX204266/SRR616419/SRR616419.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKUIT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKUIT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-01A-01D	DNA	EFO	SRS190201	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H04	SRX204266		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L01.bam	SRR616419	@dbgap@:reads/SRP012006/SRS190201/SRX204266/SRR616419/SRR616419.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKUIT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKUIT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-01A-01D	DNA	EFO	SRS190201	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H04	SRX204266		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L01.bam	SRR616419	@dbgap@:reads/SRP012006/SRS190201/SRX204266/SRR616419/SRR616419.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKUIT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKUIT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-01A-01D	DNA	EFO	SRS190201	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H04	SRX204266		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L01.bam	SRR616419	@dbgap@:reads/SRP012006/SRS190201/SRX204266/SRR616419/SRR616419.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKUIT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKUIT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-01A-01D	DNA	EFO	SRS190201	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H04	SRX204266		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L01.bam	SRR616419	@dbgap@:reads/SRP012006/SRS190201/SRX204266/SRR616419/SRR616419.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKUIT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKUIT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-01A-01D	DNA	EFO	SRS190201	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H04	SRX204266		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L01.bam	SRR616419	@dbgap@:reads/SRP012006/SRS190201/SRX204266/SRR616419/SRR616419.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKUIT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKUIT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-01A-01D	DNA	EFO	SRS190201	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H04	SRX204266		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L01.bam	SRR616419	@dbgap@:reads/SRP012006/SRS190201/SRX204266/SRR616419/SRR616419.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-01A-01D	DNA	EFO	SRS190201	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H04	SRX204266		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L01.bam	SRR616419	@dbgap@:reads/SRP012006/SRS190201/SRX204266/SRR616419/SRR616419.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-01A-01D	DNA	EFO	SRS190201	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H04	SRX204266		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-01A-01D GS01103-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55243-FS3_L01.bam	SRR616419	@dbgap@:reads/SRP012006/SRS190201/SRX204266/SRR616419/SRR616419.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-10A-01D	DNA	EFO	SRS190202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A05	SRX204265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55349-FS3_L01.bam	SRR616426	@dbgap@:reads/SRP012006/SRS190202/SRX204265/SRR616426/SRR616426.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKUIT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKUIT_NormalVsPrimary.png	4			
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-10A-01D	DNA	EFO	SRS190202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A05	SRX204265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55349-FS3_L01.bam	SRR616426	@dbgap@:reads/SRP012006/SRS190202/SRX204265/SRR616426/SRR616426.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKUIT_NormalVsPrimary.png	4			
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-10A-01D	DNA	EFO	SRS190202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A05	SRX204265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55349-FS3_L01.bam	SRR616426	@dbgap@:reads/SRP012006/SRS190202/SRX204265/SRR616426/SRR616426.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKUIT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKUIT_NormalVsPrimary.png	4			
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-10A-01D	DNA	EFO	SRS190202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A05	SRX204265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55349-FS3_L01.bam	SRR616426	@dbgap@:reads/SRP012006/SRS190202/SRX204265/SRR616426/SRR616426.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKUIT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKUIT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKUIT_NormalVsPrimary.maf.txt	3
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-10A-01D	DNA	EFO	SRS190202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A05	SRX204265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55349-FS3_L01.bam	SRR616426	@dbgap@:reads/SRP012006/SRS190202/SRX204265/SRR616426/SRR616426.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKUIT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKUIT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-10A-01D	DNA	EFO	SRS190202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A05	SRX204265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55349-FS3_L01.bam	SRR616426	@dbgap@:reads/SRP012006/SRS190202/SRX204265/SRR616426/SRR616426.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKUIT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKUIT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-10A-01D	DNA	EFO	SRS190202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A05	SRX204265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55349-FS3_L01.bam	SRR616426	@dbgap@:reads/SRP012006/SRS190202/SRX204265/SRR616426/SRR616426.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKUIT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKUIT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-10A-01D	DNA	EFO	SRS190202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A05	SRX204265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55349-FS3_L01.bam	SRR616426	@dbgap@:reads/SRP012006/SRS190202/SRX204265/SRR616426/SRR616426.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKUIT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKUIT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-10A-01D	DNA	EFO	SRS190202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A05	SRX204265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55349-FS3_L01.bam	SRR616426	@dbgap@:reads/SRP012006/SRS190202/SRX204265/SRR616426/SRR616426.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKUIT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKUIT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-10A-01D	DNA	EFO	SRS190202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A05	SRX204265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55349-FS3_L01.bam	SRR616426	@dbgap@:reads/SRP012006/SRS190202/SRX204265/SRR616426/SRR616426.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKUIT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKUIT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-10A-01D	DNA	EFO	SRS190202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A05	SRX204265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55349-FS3_L01.bam	SRR616426	@dbgap@:reads/SRP012006/SRS190202/SRX204265/SRR616426/SRR616426.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKUIT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKUIT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-10A-01D	DNA	EFO	SRS190202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A05	SRX204265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55349-FS3_L01.bam	SRR616426	@dbgap@:reads/SRP012006/SRS190202/SRX204265/SRR616426/SRR616426.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKUIT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKUIT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-10A-01D	DNA	EFO	SRS190202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A05	SRX204265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55349-FS3_L01.bam	SRR616426	@dbgap@:reads/SRP012006/SRS190202/SRX204265/SRR616426/SRR616426.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-10A-01D	DNA	EFO	SRS190202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A05	SRX204265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55349-FS3_L01.bam	SRR616426	@dbgap@:reads/SRP012006/SRS190202/SRX204265/SRR616426/SRR616426.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-10A-01D	DNA	EFO	SRS190202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A05	SRX204265		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKUIT-10A-01D GS01103-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55349-FS3_L01.bam	SRR616426	@dbgap@:reads/SRP012006/SRS190202/SRX204265/SRR616426/SRR616426.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01D	DNA	EFO	SRS160389	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_H02	SRX176161		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44545-FS3_L01.bam	SRR537238	@dbgap@:reads/SRP012006/SRS160389/SRX176161/SRR537238/SRR537238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKVET_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKVET_NormalVsPrimary.png	4			
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01D	DNA	EFO	SRS160389	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_H02	SRX176161		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44545-FS3_L01.bam	SRR537238	@dbgap@:reads/SRP012006/SRS160389/SRX176161/SRR537238/SRR537238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKVET_NormalVsPrimary.png	4			
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01D	DNA	EFO	SRS160389	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_H02	SRX176161		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44545-FS3_L01.bam	SRR537238	@dbgap@:reads/SRP012006/SRS160389/SRX176161/SRR537238/SRR537238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKVET_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKVET_NormalVsPrimary.png	4			
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01D	DNA	EFO	SRS160389	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_H02	SRX176161		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44545-FS3_L01.bam	SRR537238	@dbgap@:reads/SRP012006/SRS160389/SRX176161/SRR537238/SRR537238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKVET_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKVET_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKVET_NormalVsPrimary.maf.txt	3
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01D	DNA	EFO	SRS160389	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_H02	SRX176161		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44545-FS3_L01.bam	SRR537238	@dbgap@:reads/SRP012006/SRS160389/SRX176161/SRR537238/SRR537238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKVET_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKVET_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01D	DNA	EFO	SRS160389	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_H02	SRX176161		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44545-FS3_L01.bam	SRR537238	@dbgap@:reads/SRP012006/SRS160389/SRX176161/SRR537238/SRR537238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKVET_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKVET_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01D	DNA	EFO	SRS160389	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_H02	SRX176161		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44545-FS3_L01.bam	SRR537238	@dbgap@:reads/SRP012006/SRS160389/SRX176161/SRR537238/SRR537238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKVET_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKVET_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01D	DNA	EFO	SRS160389	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_H02	SRX176161		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44545-FS3_L01.bam	SRR537238	@dbgap@:reads/SRP012006/SRS160389/SRX176161/SRR537238/SRR537238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKVET_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKVET_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01D	DNA	EFO	SRS160389	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_H02	SRX176161		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44545-FS3_L01.bam	SRR537238	@dbgap@:reads/SRP012006/SRS160389/SRX176161/SRR537238/SRR537238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKVET_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKVET_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01D	DNA	EFO	SRS160389	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_H02	SRX176161		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44545-FS3_L01.bam	SRR537238	@dbgap@:reads/SRP012006/SRS160389/SRX176161/SRR537238/SRR537238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKVET_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKVET_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01D	DNA	EFO	SRS160389	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_H02	SRX176161		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44545-FS3_L01.bam	SRR537238	@dbgap@:reads/SRP012006/SRS160389/SRX176161/SRR537238/SRR537238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKVET_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKVET_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01D	DNA	EFO	SRS160389	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_H02	SRX176161		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44545-FS3_L01.bam	SRR537238	@dbgap@:reads/SRP012006/SRS160389/SRX176161/SRR537238/SRR537238.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKVET_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKVET_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01D	DNA	EFO	SRS160389	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_H02	SRX176161		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44545-FS3_L01.bam	SRR537238	@dbgap@:reads/SRP012006/SRS160389/SRX176161/SRR537238/SRR537238.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01D	DNA	EFO	SRS160389	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_H02	SRX176161		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44545-FS3_L01.bam	SRR537238	@dbgap@:reads/SRP012006/SRS160389/SRX176161/SRR537238/SRR537238.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01D	DNA	EFO	SRS160389	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_H02	SRX176161		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-01A-01D GS00941-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44545-FS3_L01.bam	SRR537238	@dbgap@:reads/SRP012006/SRS160389/SRX176161/SRR537238/SRR537238.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-11A-01D	DNA	EFO	SRS160390	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G04	SRX176160		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44546-FS3_L01.bam	SRR537230	@dbgap@:reads/SRP012006/SRS160390/SRX176160/SRR537230/SRR537230.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKVET_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKVET_NormalVsPrimary.png	4			
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-11A-01D	DNA	EFO	SRS160390	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G04	SRX176160		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44546-FS3_L01.bam	SRR537230	@dbgap@:reads/SRP012006/SRS160390/SRX176160/SRR537230/SRR537230.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKVET_NormalVsPrimary.png	4			
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-11A-01D	DNA	EFO	SRS160390	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G04	SRX176160		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44546-FS3_L01.bam	SRR537230	@dbgap@:reads/SRP012006/SRS160390/SRX176160/SRR537230/SRR537230.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKVET_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKVET_NormalVsPrimary.png	4			
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-11A-01D	DNA	EFO	SRS160390	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G04	SRX176160		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44546-FS3_L01.bam	SRR537230	@dbgap@:reads/SRP012006/SRS160390/SRX176160/SRR537230/SRR537230.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKVET_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKVET_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKVET_NormalVsPrimary.maf.txt	3
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-11A-01D	DNA	EFO	SRS160390	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G04	SRX176160		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44546-FS3_L01.bam	SRR537230	@dbgap@:reads/SRP012006/SRS160390/SRX176160/SRR537230/SRR537230.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKVET_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKVET_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-11A-01D	DNA	EFO	SRS160390	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G04	SRX176160		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44546-FS3_L01.bam	SRR537230	@dbgap@:reads/SRP012006/SRS160390/SRX176160/SRR537230/SRR537230.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKVET_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKVET_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-11A-01D	DNA	EFO	SRS160390	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G04	SRX176160		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44546-FS3_L01.bam	SRR537230	@dbgap@:reads/SRP012006/SRS160390/SRX176160/SRR537230/SRR537230.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKVET_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKVET_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-11A-01D	DNA	EFO	SRS160390	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G04	SRX176160		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44546-FS3_L01.bam	SRR537230	@dbgap@:reads/SRP012006/SRS160390/SRX176160/SRR537230/SRR537230.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKVET_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKVET_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-11A-01D	DNA	EFO	SRS160390	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G04	SRX176160		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44546-FS3_L01.bam	SRR537230	@dbgap@:reads/SRP012006/SRS160390/SRX176160/SRR537230/SRR537230.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKVET_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKVET_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-11A-01D	DNA	EFO	SRS160390	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G04	SRX176160		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44546-FS3_L01.bam	SRR537230	@dbgap@:reads/SRP012006/SRS160390/SRX176160/SRR537230/SRR537230.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKVET_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKVET_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-11A-01D	DNA	EFO	SRS160390	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G04	SRX176160		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44546-FS3_L01.bam	SRR537230	@dbgap@:reads/SRP012006/SRS160390/SRX176160/SRR537230/SRR537230.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKVET_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKVET_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-11A-01D	DNA	EFO	SRS160390	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G04	SRX176160		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44546-FS3_L01.bam	SRR537230	@dbgap@:reads/SRP012006/SRS160390/SRX176160/SRR537230/SRR537230.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKVET_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKVET_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-11A-01D	DNA	EFO	SRS160390	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G04	SRX176160		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44546-FS3_L01.bam	SRR537230	@dbgap@:reads/SRP012006/SRS160390/SRX176160/SRR537230/SRR537230.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-11A-01D	DNA	EFO	SRS160390	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G04	SRX176160		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44546-FS3_L01.bam	SRR537230	@dbgap@:reads/SRP012006/SRS160390/SRX176160/SRR537230/SRR537230.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-11A-01D	DNA	EFO	SRS160390	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_G04	SRX176160		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKVET-11A-01D GS00941-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS44546-FS3_L01.bam	SRR537230	@dbgap@:reads/SRP012006/SRS160390/SRX176160/SRR537230/SRR537230.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-01A-01D	DNA	EFO	SRS287618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A02	SRX202693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42102-FS3_L01.bam	SRR610906	@dbgap@:reads/SRP012006/SRS287618/SRX202693/SRR610906/SRR610906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKWPM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKWPM_NormalVsPrimary.png	4			
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-01A-01D	DNA	EFO	SRS287618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A02	SRX202693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42102-FS3_L01.bam	SRR610906	@dbgap@:reads/SRP012006/SRS287618/SRX202693/SRR610906/SRR610906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKWPM_NormalVsPrimary.png	4			
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-01A-01D	DNA	EFO	SRS287618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A02	SRX202693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42102-FS3_L01.bam	SRR610906	@dbgap@:reads/SRP012006/SRS287618/SRX202693/SRR610906/SRR610906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKWPM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKWPM_NormalVsPrimary.png	4			
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-01A-01D	DNA	EFO	SRS287618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A02	SRX202693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42102-FS3_L01.bam	SRR610906	@dbgap@:reads/SRP012006/SRS287618/SRX202693/SRR610906/SRR610906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKWPM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKWPM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKWPM_NormalVsPrimary.maf.txt	3
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-01A-01D	DNA	EFO	SRS287618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A02	SRX202693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42102-FS3_L01.bam	SRR610906	@dbgap@:reads/SRP012006/SRS287618/SRX202693/SRR610906/SRR610906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKWPM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKWPM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-01A-01D	DNA	EFO	SRS287618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A02	SRX202693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42102-FS3_L01.bam	SRR610906	@dbgap@:reads/SRP012006/SRS287618/SRX202693/SRR610906/SRR610906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKWPM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKWPM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-01A-01D	DNA	EFO	SRS287618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A02	SRX202693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42102-FS3_L01.bam	SRR610906	@dbgap@:reads/SRP012006/SRS287618/SRX202693/SRR610906/SRR610906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKWPM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKWPM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-01A-01D	DNA	EFO	SRS287618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A02	SRX202693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42102-FS3_L01.bam	SRR610906	@dbgap@:reads/SRP012006/SRS287618/SRX202693/SRR610906/SRR610906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKWPM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKWPM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-01A-01D	DNA	EFO	SRS287618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A02	SRX202693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42102-FS3_L01.bam	SRR610906	@dbgap@:reads/SRP012006/SRS287618/SRX202693/SRR610906/SRR610906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKWPM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKWPM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-01A-01D	DNA	EFO	SRS287618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A02	SRX202693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42102-FS3_L01.bam	SRR610906	@dbgap@:reads/SRP012006/SRS287618/SRX202693/SRR610906/SRR610906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKWPM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKWPM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-01A-01D	DNA	EFO	SRS287618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A02	SRX202693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42102-FS3_L01.bam	SRR610906	@dbgap@:reads/SRP012006/SRS287618/SRX202693/SRR610906/SRR610906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKWPM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKWPM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-01A-01D	DNA	EFO	SRS287618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A02	SRX202693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42102-FS3_L01.bam	SRR610906	@dbgap@:reads/SRP012006/SRS287618/SRX202693/SRR610906/SRR610906.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKWPM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKWPM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-01A-01D	DNA	EFO	SRS287618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A02	SRX202693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42102-FS3_L01.bam	SRR610906	@dbgap@:reads/SRP012006/SRS287618/SRX202693/SRR610906/SRR610906.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-01A-01D	DNA	EFO	SRS287618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A02	SRX202693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42102-FS3_L01.bam	SRR610906	@dbgap@:reads/SRP012006/SRS287618/SRX202693/SRR610906/SRR610906.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-01A-01D	DNA	EFO	SRS287618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A02	SRX202693		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-01A-01D GS00941-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42102-FS3_L01.bam	SRR610906	@dbgap@:reads/SRP012006/SRS287618/SRX202693/SRR610906/SRR610906.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-10A-01D	DNA	EFO	SRS287619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01087-CLS_H10	SRX202692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52358-FS3_L01.bam	SRR610914	@dbgap@:reads/SRP012006/SRS287619/SRX202692/SRR610914/SRR610914.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKWPM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKWPM_NormalVsPrimary.png	4			
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-10A-01D	DNA	EFO	SRS287619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01087-CLS_H10	SRX202692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52358-FS3_L01.bam	SRR610914	@dbgap@:reads/SRP012006/SRS287619/SRX202692/SRR610914/SRR610914.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKWPM_NormalVsPrimary.png	4			
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-10A-01D	DNA	EFO	SRS287619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01087-CLS_H10	SRX202692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52358-FS3_L01.bam	SRR610914	@dbgap@:reads/SRP012006/SRS287619/SRX202692/SRR610914/SRR610914.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKWPM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKWPM_NormalVsPrimary.png	4			
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-10A-01D	DNA	EFO	SRS287619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01087-CLS_H10	SRX202692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52358-FS3_L01.bam	SRR610914	@dbgap@:reads/SRP012006/SRS287619/SRX202692/SRR610914/SRR610914.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKWPM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKWPM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKWPM_NormalVsPrimary.maf.txt	3
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-10A-01D	DNA	EFO	SRS287619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01087-CLS_H10	SRX202692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52358-FS3_L01.bam	SRR610914	@dbgap@:reads/SRP012006/SRS287619/SRX202692/SRR610914/SRR610914.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKWPM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKWPM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-10A-01D	DNA	EFO	SRS287619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01087-CLS_H10	SRX202692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52358-FS3_L01.bam	SRR610914	@dbgap@:reads/SRP012006/SRS287619/SRX202692/SRR610914/SRR610914.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKWPM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKWPM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-10A-01D	DNA	EFO	SRS287619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01087-CLS_H10	SRX202692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52358-FS3_L01.bam	SRR610914	@dbgap@:reads/SRP012006/SRS287619/SRX202692/SRR610914/SRR610914.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKWPM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKWPM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-10A-01D	DNA	EFO	SRS287619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01087-CLS_H10	SRX202692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52358-FS3_L01.bam	SRR610914	@dbgap@:reads/SRP012006/SRS287619/SRX202692/SRR610914/SRR610914.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKWPM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKWPM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-10A-01D	DNA	EFO	SRS287619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01087-CLS_H10	SRX202692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52358-FS3_L01.bam	SRR610914	@dbgap@:reads/SRP012006/SRS287619/SRX202692/SRR610914/SRR610914.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKWPM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKWPM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-10A-01D	DNA	EFO	SRS287619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01087-CLS_H10	SRX202692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52358-FS3_L01.bam	SRR610914	@dbgap@:reads/SRP012006/SRS287619/SRX202692/SRR610914/SRR610914.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKWPM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKWPM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-10A-01D	DNA	EFO	SRS287619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01087-CLS_H10	SRX202692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52358-FS3_L01.bam	SRR610914	@dbgap@:reads/SRP012006/SRS287619/SRX202692/SRR610914/SRR610914.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKWPM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKWPM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-10A-01D	DNA	EFO	SRS287619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01087-CLS_H10	SRX202692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52358-FS3_L01.bam	SRR610914	@dbgap@:reads/SRP012006/SRS287619/SRX202692/SRR610914/SRR610914.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKWPM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKWPM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-10A-01D	DNA	EFO	SRS287619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01087-CLS_H10	SRX202692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52358-FS3_L01.bam	SRR610914	@dbgap@:reads/SRP012006/SRS287619/SRX202692/SRR610914/SRR610914.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-10A-01D	DNA	EFO	SRS287619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01087-CLS_H10	SRX202692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52358-FS3_L01.bam	SRR610914	@dbgap@:reads/SRP012006/SRS287619/SRX202692/SRR610914/SRR610914.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-10A-01D	DNA	EFO	SRS287619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01087-CLS_H10	SRX202692		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKWPM-10A-01D GS01087-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52358-FS3_L01.bam	SRR610914	@dbgap@:reads/SRP012006/SRS287619/SRX202692/SRR610914/SRR610914.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-01A-01D	DNA	EFO	SRS301307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F09	SRX202092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51998-FS3_L01.bam	SRR610065	@dbgap@:reads/SRP012006/SRS301307/SRX202092/SRR610065/SRR610065.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKYFC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKYFC_NormalVsPrimary.png	4			
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-01A-01D	DNA	EFO	SRS301307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F09	SRX202092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51998-FS3_L01.bam	SRR610065	@dbgap@:reads/SRP012006/SRS301307/SRX202092/SRR610065/SRR610065.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKYFC_NormalVsPrimary.png	4			
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-01A-01D	DNA	EFO	SRS301307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F09	SRX202092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51998-FS3_L01.bam	SRR610065	@dbgap@:reads/SRP012006/SRS301307/SRX202092/SRR610065/SRR610065.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKYFC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKYFC_NormalVsPrimary.png	4			
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-01A-01D	DNA	EFO	SRS301307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F09	SRX202092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51998-FS3_L01.bam	SRR610065	@dbgap@:reads/SRP012006/SRS301307/SRX202092/SRR610065/SRR610065.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKYFC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKYFC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKYFC_NormalVsPrimary.maf.txt	3
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-01A-01D	DNA	EFO	SRS301307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F09	SRX202092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51998-FS3_L01.bam	SRR610065	@dbgap@:reads/SRP012006/SRS301307/SRX202092/SRR610065/SRR610065.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKYFC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKYFC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-01A-01D	DNA	EFO	SRS301307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F09	SRX202092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51998-FS3_L01.bam	SRR610065	@dbgap@:reads/SRP012006/SRS301307/SRX202092/SRR610065/SRR610065.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKYFC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKYFC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-01A-01D	DNA	EFO	SRS301307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F09	SRX202092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51998-FS3_L01.bam	SRR610065	@dbgap@:reads/SRP012006/SRS301307/SRX202092/SRR610065/SRR610065.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKYFC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKYFC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-01A-01D	DNA	EFO	SRS301307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F09	SRX202092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51998-FS3_L01.bam	SRR610065	@dbgap@:reads/SRP012006/SRS301307/SRX202092/SRR610065/SRR610065.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKYFC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKYFC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-01A-01D	DNA	EFO	SRS301307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F09	SRX202092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51998-FS3_L01.bam	SRR610065	@dbgap@:reads/SRP012006/SRS301307/SRX202092/SRR610065/SRR610065.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKYFC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKYFC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-01A-01D	DNA	EFO	SRS301307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F09	SRX202092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51998-FS3_L01.bam	SRR610065	@dbgap@:reads/SRP012006/SRS301307/SRX202092/SRR610065/SRR610065.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKYFC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKYFC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-01A-01D	DNA	EFO	SRS301307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F09	SRX202092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51998-FS3_L01.bam	SRR610065	@dbgap@:reads/SRP012006/SRS301307/SRX202092/SRR610065/SRR610065.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKYFC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKYFC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-01A-01D	DNA	EFO	SRS301307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F09	SRX202092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51998-FS3_L01.bam	SRR610065	@dbgap@:reads/SRP012006/SRS301307/SRX202092/SRR610065/SRR610065.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKYFC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKYFC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-01A-01D	DNA	EFO	SRS301307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F09	SRX202092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51998-FS3_L01.bam	SRR610065	@dbgap@:reads/SRP012006/SRS301307/SRX202092/SRR610065/SRR610065.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-01A-01D	DNA	EFO	SRS301307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F09	SRX202092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51998-FS3_L01.bam	SRR610065	@dbgap@:reads/SRP012006/SRS301307/SRX202092/SRR610065/SRR610065.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-01A-01D	DNA	EFO	SRS301307	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F09	SRX202092		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-01A-01D GS01073-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51998-FS3_L01.bam	SRR610065	@dbgap@:reads/SRP012006/SRS301307/SRX202092/SRR610065/SRR610065.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-11A-01D	DNA	EFO	SRS373596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D12	SRX202091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51997-FS3_L01.bam	SRR610073	@dbgap@:reads/SRP012006/SRS373596/SRX202091/SRR610073/SRR610073.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKYFC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKYFC_NormalVsPrimary.png	4			
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-11A-01D	DNA	EFO	SRS373596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D12	SRX202091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51997-FS3_L01.bam	SRR610073	@dbgap@:reads/SRP012006/SRS373596/SRX202091/SRR610073/SRR610073.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKYFC_NormalVsPrimary.png	4			
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-11A-01D	DNA	EFO	SRS373596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D12	SRX202091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51997-FS3_L01.bam	SRR610073	@dbgap@:reads/SRP012006/SRS373596/SRX202091/SRR610073/SRR610073.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKYFC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKYFC_NormalVsPrimary.png	4			
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-11A-01D	DNA	EFO	SRS373596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D12	SRX202091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51997-FS3_L01.bam	SRR610073	@dbgap@:reads/SRP012006/SRS373596/SRX202091/SRR610073/SRR610073.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKYFC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKYFC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKYFC_NormalVsPrimary.maf.txt	3
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-11A-01D	DNA	EFO	SRS373596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D12	SRX202091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51997-FS3_L01.bam	SRR610073	@dbgap@:reads/SRP012006/SRS373596/SRX202091/SRR610073/SRR610073.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKYFC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKYFC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-11A-01D	DNA	EFO	SRS373596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D12	SRX202091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51997-FS3_L01.bam	SRR610073	@dbgap@:reads/SRP012006/SRS373596/SRX202091/SRR610073/SRR610073.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKYFC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKYFC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-11A-01D	DNA	EFO	SRS373596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D12	SRX202091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51997-FS3_L01.bam	SRR610073	@dbgap@:reads/SRP012006/SRS373596/SRX202091/SRR610073/SRR610073.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKYFC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKYFC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-11A-01D	DNA	EFO	SRS373596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D12	SRX202091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51997-FS3_L01.bam	SRR610073	@dbgap@:reads/SRP012006/SRS373596/SRX202091/SRR610073/SRR610073.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKYFC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKYFC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-11A-01D	DNA	EFO	SRS373596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D12	SRX202091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51997-FS3_L01.bam	SRR610073	@dbgap@:reads/SRP012006/SRS373596/SRX202091/SRR610073/SRR610073.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKYFC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKYFC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-11A-01D	DNA	EFO	SRS373596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D12	SRX202091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51997-FS3_L01.bam	SRR610073	@dbgap@:reads/SRP012006/SRS373596/SRX202091/SRR610073/SRR610073.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKYFC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKYFC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-11A-01D	DNA	EFO	SRS373596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D12	SRX202091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51997-FS3_L01.bam	SRR610073	@dbgap@:reads/SRP012006/SRS373596/SRX202091/SRR610073/SRR610073.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKYFC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKYFC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-11A-01D	DNA	EFO	SRS373596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D12	SRX202091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51997-FS3_L01.bam	SRR610073	@dbgap@:reads/SRP012006/SRS373596/SRX202091/SRR610073/SRR610073.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKYFC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKYFC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-11A-01D	DNA	EFO	SRS373596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D12	SRX202091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51997-FS3_L01.bam	SRR610073	@dbgap@:reads/SRP012006/SRS373596/SRX202091/SRR610073/SRR610073.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-11A-01D	DNA	EFO	SRS373596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D12	SRX202091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51997-FS3_L01.bam	SRR610073	@dbgap@:reads/SRP012006/SRS373596/SRX202091/SRR610073/SRR610073.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-11A-01D	DNA	EFO	SRS373596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_D12	SRX202091		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKYFC-11A-01D GS01073-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51997-FS3_L01.bam	SRR610073	@dbgap@:reads/SRP012006/SRS373596/SRX202091/SRR610073/SRR610073.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-01A-01D	DNA	EFO	SRS190207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B02	SRX148459		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40003-FS3_L01.bam	SRR497868	@dbgap@:reads/SRP012006/SRS190207/SRX148459/SRR497868/SRR497868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKZER_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKZER_NormalVsPrimary.png	4			
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-01A-01D	DNA	EFO	SRS190207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B02	SRX148459		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40003-FS3_L01.bam	SRR497868	@dbgap@:reads/SRP012006/SRS190207/SRX148459/SRR497868/SRR497868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKZER_NormalVsPrimary.png	4			
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-01A-01D	DNA	EFO	SRS190207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B02	SRX148459		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40003-FS3_L01.bam	SRR497868	@dbgap@:reads/SRP012006/SRS190207/SRX148459/SRR497868/SRR497868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKZER_NormalVsPrimary.png	4			
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-01A-01D	DNA	EFO	SRS190207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B02	SRX148459		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40003-FS3_L01.bam	SRR497868	@dbgap@:reads/SRP012006/SRS190207/SRX148459/SRR497868/SRR497868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKZER_NormalVsPrimary.maf.txt	3
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-01A-01D	DNA	EFO	SRS190207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B02	SRX148459		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40003-FS3_L01.bam	SRR497868	@dbgap@:reads/SRP012006/SRS190207/SRX148459/SRR497868/SRR497868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-01A-01D	DNA	EFO	SRS190207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B02	SRX148459		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40003-FS3_L01.bam	SRR497868	@dbgap@:reads/SRP012006/SRS190207/SRX148459/SRR497868/SRR497868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-01A-01D	DNA	EFO	SRS190207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B02	SRX148459		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40003-FS3_L01.bam	SRR497868	@dbgap@:reads/SRP012006/SRS190207/SRX148459/SRR497868/SRR497868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-01A-01D	DNA	EFO	SRS190207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B02	SRX148459		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40003-FS3_L01.bam	SRR497868	@dbgap@:reads/SRP012006/SRS190207/SRX148459/SRR497868/SRR497868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-01A-01D	DNA	EFO	SRS190207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B02	SRX148459		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40003-FS3_L01.bam	SRR497868	@dbgap@:reads/SRP012006/SRS190207/SRX148459/SRR497868/SRR497868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-01A-01D	DNA	EFO	SRS190207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B02	SRX148459		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40003-FS3_L01.bam	SRR497868	@dbgap@:reads/SRP012006/SRS190207/SRX148459/SRR497868/SRR497868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-01A-01D	DNA	EFO	SRS190207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B02	SRX148459		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40003-FS3_L01.bam	SRR497868	@dbgap@:reads/SRP012006/SRS190207/SRX148459/SRR497868/SRR497868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-01A-01D	DNA	EFO	SRS190207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B02	SRX148459		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40003-FS3_L01.bam	SRR497868	@dbgap@:reads/SRP012006/SRS190207/SRX148459/SRR497868/SRR497868.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-01A-01D	DNA	EFO	SRS190207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B02	SRX148459		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40003-FS3_L01.bam	SRR497868	@dbgap@:reads/SRP012006/SRS190207/SRX148459/SRR497868/SRR497868.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-01A-01D	DNA	EFO	SRS190207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B02	SRX148459		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40003-FS3_L01.bam	SRR497868	@dbgap@:reads/SRP012006/SRS190207/SRX148459/SRR497868/SRR497868.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-01A-01D	DNA	EFO	SRS190207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B02	SRX148459		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-01A-01D GS00941-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40003-FS3_L01.bam	SRR497868	@dbgap@:reads/SRP012006/SRS190207/SRX148459/SRR497868/SRR497868.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-10A-01D	DNA	EFO	SRS190208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A04	SRX148458		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42101-FS3_L01.bam	SRR497876	@dbgap@:reads/SRP012006/SRS190208/SRX148458/SRR497876/SRR497876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKZER_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKZER_NormalVsPrimary.png	4			
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-10A-01D	DNA	EFO	SRS190208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A04	SRX148458		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42101-FS3_L01.bam	SRR497876	@dbgap@:reads/SRP012006/SRS190208/SRX148458/SRR497876/SRR497876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKZER_NormalVsPrimary.png	4			
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-10A-01D	DNA	EFO	SRS190208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A04	SRX148458		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42101-FS3_L01.bam	SRR497876	@dbgap@:reads/SRP012006/SRS190208/SRX148458/SRR497876/SRR497876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKZER_NormalVsPrimary.png	4			
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-10A-01D	DNA	EFO	SRS190208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A04	SRX148458		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42101-FS3_L01.bam	SRR497876	@dbgap@:reads/SRP012006/SRS190208/SRX148458/SRR497876/SRR497876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKZER_NormalVsPrimary.maf.txt	3
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-10A-01D	DNA	EFO	SRS190208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A04	SRX148458		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42101-FS3_L01.bam	SRR497876	@dbgap@:reads/SRP012006/SRS190208/SRX148458/SRR497876/SRR497876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-10A-01D	DNA	EFO	SRS190208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A04	SRX148458		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42101-FS3_L01.bam	SRR497876	@dbgap@:reads/SRP012006/SRS190208/SRX148458/SRR497876/SRR497876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-10A-01D	DNA	EFO	SRS190208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A04	SRX148458		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42101-FS3_L01.bam	SRR497876	@dbgap@:reads/SRP012006/SRS190208/SRX148458/SRR497876/SRR497876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-10A-01D	DNA	EFO	SRS190208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A04	SRX148458		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42101-FS3_L01.bam	SRR497876	@dbgap@:reads/SRP012006/SRS190208/SRX148458/SRR497876/SRR497876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-10A-01D	DNA	EFO	SRS190208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A04	SRX148458		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42101-FS3_L01.bam	SRR497876	@dbgap@:reads/SRP012006/SRS190208/SRX148458/SRR497876/SRR497876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-10A-01D	DNA	EFO	SRS190208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A04	SRX148458		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42101-FS3_L01.bam	SRR497876	@dbgap@:reads/SRP012006/SRS190208/SRX148458/SRR497876/SRR497876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-10A-01D	DNA	EFO	SRS190208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A04	SRX148458		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42101-FS3_L01.bam	SRR497876	@dbgap@:reads/SRP012006/SRS190208/SRX148458/SRR497876/SRR497876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-10A-01D	DNA	EFO	SRS190208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A04	SRX148458		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42101-FS3_L01.bam	SRR497876	@dbgap@:reads/SRP012006/SRS190208/SRX148458/SRR497876/SRR497876.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZER_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZER_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-10A-01D	DNA	EFO	SRS190208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A04	SRX148458		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42101-FS3_L01.bam	SRR497876	@dbgap@:reads/SRP012006/SRS190208/SRX148458/SRR497876/SRR497876.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-10A-01D	DNA	EFO	SRS190208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A04	SRX148458		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42101-FS3_L01.bam	SRR497876	@dbgap@:reads/SRP012006/SRS190208/SRX148458/SRR497876/SRR497876.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-10A-01D	DNA	EFO	SRS190208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_A04	SRX148458		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZER-10A-01D GS00941-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42101-FS3_L01.bam	SRR497876	@dbgap@:reads/SRP012006/SRS190208/SRX148458/SRR497876/SRR497876.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-01A-01D	DNA	EFO	SRS301311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G09	SRX193170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52848-FS3_L01.bam	SRR584028	@dbgap@:reads/SRP012006/SRS301311/SRX193170/SRR584028/SRR584028.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKZFK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKZFK_NormalVsPrimary.png	4			
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-01A-01D	DNA	EFO	SRS301311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G09	SRX193170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52848-FS3_L01.bam	SRR584028	@dbgap@:reads/SRP012006/SRS301311/SRX193170/SRR584028/SRR584028.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKZFK_NormalVsPrimary.png	4			
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-01A-01D	DNA	EFO	SRS301311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G09	SRX193170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52848-FS3_L01.bam	SRR584028	@dbgap@:reads/SRP012006/SRS301311/SRX193170/SRR584028/SRR584028.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZFK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKZFK_NormalVsPrimary.png	4			
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-01A-01D	DNA	EFO	SRS301311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G09	SRX193170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52848-FS3_L01.bam	SRR584028	@dbgap@:reads/SRP012006/SRS301311/SRX193170/SRR584028/SRR584028.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZFK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZFK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKZFK_NormalVsPrimary.maf.txt	3
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-01A-01D	DNA	EFO	SRS301311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G09	SRX193170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52848-FS3_L01.bam	SRR584028	@dbgap@:reads/SRP012006/SRS301311/SRX193170/SRR584028/SRR584028.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZFK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZFK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-01A-01D	DNA	EFO	SRS301311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G09	SRX193170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52848-FS3_L01.bam	SRR584028	@dbgap@:reads/SRP012006/SRS301311/SRX193170/SRR584028/SRR584028.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZFK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZFK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-01A-01D	DNA	EFO	SRS301311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G09	SRX193170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52848-FS3_L01.bam	SRR584028	@dbgap@:reads/SRP012006/SRS301311/SRX193170/SRR584028/SRR584028.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZFK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZFK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-01A-01D	DNA	EFO	SRS301311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G09	SRX193170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52848-FS3_L01.bam	SRR584028	@dbgap@:reads/SRP012006/SRS301311/SRX193170/SRR584028/SRR584028.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZFK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZFK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-01A-01D	DNA	EFO	SRS301311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G09	SRX193170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52848-FS3_L01.bam	SRR584028	@dbgap@:reads/SRP012006/SRS301311/SRX193170/SRR584028/SRR584028.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZFK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZFK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-01A-01D	DNA	EFO	SRS301311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G09	SRX193170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52848-FS3_L01.bam	SRR584028	@dbgap@:reads/SRP012006/SRS301311/SRX193170/SRR584028/SRR584028.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZFK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZFK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-01A-01D	DNA	EFO	SRS301311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G09	SRX193170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52848-FS3_L01.bam	SRR584028	@dbgap@:reads/SRP012006/SRS301311/SRX193170/SRR584028/SRR584028.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZFK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZFK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-01A-01D	DNA	EFO	SRS301311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G09	SRX193170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52848-FS3_L01.bam	SRR584028	@dbgap@:reads/SRP012006/SRS301311/SRX193170/SRR584028/SRR584028.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZFK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZFK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-01A-01D	DNA	EFO	SRS301311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G09	SRX193170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52848-FS3_L01.bam	SRR584028	@dbgap@:reads/SRP012006/SRS301311/SRX193170/SRR584028/SRR584028.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-01A-01D	DNA	EFO	SRS301311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G09	SRX193170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52848-FS3_L01.bam	SRR584028	@dbgap@:reads/SRP012006/SRS301311/SRX193170/SRR584028/SRR584028.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-01A-01D	DNA	EFO	SRS301311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G09	SRX193170		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-01A-01D GS01073-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52848-FS3_L01.bam	SRR584028	@dbgap@:reads/SRP012006/SRS301311/SRX193170/SRR584028/SRR584028.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-11A-01D	DNA	EFO	SRS301312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E12	SRX193169		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51999-FS3_L01.bam	SRR584036	@dbgap@:reads/SRP012006/SRS301312/SRX193169/SRR584036/SRR584036.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKZFK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKZFK_NormalVsPrimary.png	4			
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-11A-01D	DNA	EFO	SRS301312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E12	SRX193169		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51999-FS3_L01.bam	SRR584036	@dbgap@:reads/SRP012006/SRS301312/SRX193169/SRR584036/SRR584036.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKZFK_NormalVsPrimary.png	4			
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-11A-01D	DNA	EFO	SRS301312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E12	SRX193169		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51999-FS3_L01.bam	SRR584036	@dbgap@:reads/SRP012006/SRS301312/SRX193169/SRR584036/SRR584036.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZFK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKZFK_NormalVsPrimary.png	4			
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-11A-01D	DNA	EFO	SRS301312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E12	SRX193169		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51999-FS3_L01.bam	SRR584036	@dbgap@:reads/SRP012006/SRS301312/SRX193169/SRR584036/SRR584036.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZFK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZFK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKZFK_NormalVsPrimary.maf.txt	3
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-11A-01D	DNA	EFO	SRS301312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E12	SRX193169		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51999-FS3_L01.bam	SRR584036	@dbgap@:reads/SRP012006/SRS301312/SRX193169/SRR584036/SRR584036.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZFK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZFK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-11A-01D	DNA	EFO	SRS301312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E12	SRX193169		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51999-FS3_L01.bam	SRR584036	@dbgap@:reads/SRP012006/SRS301312/SRX193169/SRR584036/SRR584036.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZFK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZFK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-11A-01D	DNA	EFO	SRS301312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E12	SRX193169		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51999-FS3_L01.bam	SRR584036	@dbgap@:reads/SRP012006/SRS301312/SRX193169/SRR584036/SRR584036.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZFK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZFK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-11A-01D	DNA	EFO	SRS301312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E12	SRX193169		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51999-FS3_L01.bam	SRR584036	@dbgap@:reads/SRP012006/SRS301312/SRX193169/SRR584036/SRR584036.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZFK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZFK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-11A-01D	DNA	EFO	SRS301312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E12	SRX193169		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51999-FS3_L01.bam	SRR584036	@dbgap@:reads/SRP012006/SRS301312/SRX193169/SRR584036/SRR584036.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZFK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZFK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-11A-01D	DNA	EFO	SRS301312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E12	SRX193169		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51999-FS3_L01.bam	SRR584036	@dbgap@:reads/SRP012006/SRS301312/SRX193169/SRR584036/SRR584036.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZFK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZFK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-11A-01D	DNA	EFO	SRS301312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E12	SRX193169		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51999-FS3_L01.bam	SRR584036	@dbgap@:reads/SRP012006/SRS301312/SRX193169/SRR584036/SRR584036.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZFK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZFK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-11A-01D	DNA	EFO	SRS301312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E12	SRX193169		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51999-FS3_L01.bam	SRR584036	@dbgap@:reads/SRP012006/SRS301312/SRX193169/SRR584036/SRR584036.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZFK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZFK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-11A-01D	DNA	EFO	SRS301312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E12	SRX193169		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51999-FS3_L01.bam	SRR584036	@dbgap@:reads/SRP012006/SRS301312/SRX193169/SRR584036/SRR584036.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-11A-01D	DNA	EFO	SRS301312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E12	SRX193169		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51999-FS3_L01.bam	SRR584036	@dbgap@:reads/SRP012006/SRS301312/SRX193169/SRR584036/SRR584036.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-11A-01D	DNA	EFO	SRS301312	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_E12	SRX193169		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZFK-11A-01D GS01073-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51999-FS3_L01.bam	SRR584036	@dbgap@:reads/SRP012006/SRS301312/SRX193169/SRR584036/SRR584036.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-01A-01D	DNA	EFO	SRS301313	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H09	SRX187143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52002-FS3_L01.bam	SRR570826	@dbgap@:reads/SRP012006/SRS301313/SRX187143/SRR570826/SRR570826.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKZHF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKZHF_NormalVsPrimary.png	4			
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-01A-01D	DNA	EFO	SRS301313	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H09	SRX187143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52002-FS3_L01.bam	SRR570826	@dbgap@:reads/SRP012006/SRS301313/SRX187143/SRR570826/SRR570826.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKZHF_NormalVsPrimary.png	4			
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-01A-01D	DNA	EFO	SRS301313	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H09	SRX187143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52002-FS3_L01.bam	SRR570826	@dbgap@:reads/SRP012006/SRS301313/SRX187143/SRR570826/SRR570826.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKZHF_NormalVsPrimary.png	4			
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-01A-01D	DNA	EFO	SRS301313	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H09	SRX187143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52002-FS3_L01.bam	SRR570826	@dbgap@:reads/SRP012006/SRS301313/SRX187143/SRR570826/SRR570826.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKZHF_NormalVsPrimary.maf.txt	3
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-01A-01D	DNA	EFO	SRS301313	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H09	SRX187143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52002-FS3_L01.bam	SRR570826	@dbgap@:reads/SRP012006/SRS301313/SRX187143/SRR570826/SRR570826.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-01A-01D	DNA	EFO	SRS301313	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H09	SRX187143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52002-FS3_L01.bam	SRR570826	@dbgap@:reads/SRP012006/SRS301313/SRX187143/SRR570826/SRR570826.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-01A-01D	DNA	EFO	SRS301313	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H09	SRX187143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52002-FS3_L01.bam	SRR570826	@dbgap@:reads/SRP012006/SRS301313/SRX187143/SRR570826/SRR570826.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-01A-01D	DNA	EFO	SRS301313	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H09	SRX187143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52002-FS3_L01.bam	SRR570826	@dbgap@:reads/SRP012006/SRS301313/SRX187143/SRR570826/SRR570826.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-01A-01D	DNA	EFO	SRS301313	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H09	SRX187143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52002-FS3_L01.bam	SRR570826	@dbgap@:reads/SRP012006/SRS301313/SRX187143/SRR570826/SRR570826.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-01A-01D	DNA	EFO	SRS301313	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H09	SRX187143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52002-FS3_L01.bam	SRR570826	@dbgap@:reads/SRP012006/SRS301313/SRX187143/SRR570826/SRR570826.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-01A-01D	DNA	EFO	SRS301313	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H09	SRX187143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52002-FS3_L01.bam	SRR570826	@dbgap@:reads/SRP012006/SRS301313/SRX187143/SRR570826/SRR570826.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-01A-01D	DNA	EFO	SRS301313	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H09	SRX187143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52002-FS3_L01.bam	SRR570826	@dbgap@:reads/SRP012006/SRS301313/SRX187143/SRR570826/SRR570826.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-01A-01D	DNA	EFO	SRS301313	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H09	SRX187143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52002-FS3_L01.bam	SRR570826	@dbgap@:reads/SRP012006/SRS301313/SRX187143/SRR570826/SRR570826.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-01A-01D	DNA	EFO	SRS301313	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H09	SRX187143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52002-FS3_L01.bam	SRR570826	@dbgap@:reads/SRP012006/SRS301313/SRX187143/SRR570826/SRR570826.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-01A-01D	DNA	EFO	SRS301313	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_H09	SRX187143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-01A-01D GS01073-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52002-FS3_L01.bam	SRR570826	@dbgap@:reads/SRP012006/SRS301313/SRX187143/SRR570826/SRR570826.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-11A-01D	DNA	EFO	SRS301314	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F12	SRX187142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52001-FS3_L01.bam	SRR570834	@dbgap@:reads/SRP012006/SRS301314/SRX187142/SRR570834/SRR570834.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PAKZHF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKZHF_NormalVsPrimary.png	4			
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-11A-01D	DNA	EFO	SRS301314	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F12	SRX187142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52001-FS3_L01.bam	SRR570834	@dbgap@:reads/SRP012006/SRS301314/SRX187142/SRR570834/SRR570834.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKZHF_NormalVsPrimary.png	4			
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-11A-01D	DNA	EFO	SRS301314	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F12	SRX187142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52001-FS3_L01.bam	SRR570834	@dbgap@:reads/SRP012006/SRS301314/SRX187142/SRR570834/SRR570834.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PAKZHF_NormalVsPrimary.png	4			
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-11A-01D	DNA	EFO	SRS301314	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F12	SRX187142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52001-FS3_L01.bam	SRR570834	@dbgap@:reads/SRP012006/SRS301314/SRX187142/SRR570834/SRR570834.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PAKZHF_NormalVsPrimary.maf.txt	3
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-11A-01D	DNA	EFO	SRS301314	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F12	SRX187142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52001-FS3_L01.bam	SRR570834	@dbgap@:reads/SRP012006/SRS301314/SRX187142/SRR570834/SRR570834.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-11A-01D	DNA	EFO	SRS301314	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F12	SRX187142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52001-FS3_L01.bam	SRR570834	@dbgap@:reads/SRP012006/SRS301314/SRX187142/SRR570834/SRR570834.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-11A-01D	DNA	EFO	SRS301314	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F12	SRX187142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52001-FS3_L01.bam	SRR570834	@dbgap@:reads/SRP012006/SRS301314/SRX187142/SRR570834/SRR570834.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-11A-01D	DNA	EFO	SRS301314	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F12	SRX187142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52001-FS3_L01.bam	SRR570834	@dbgap@:reads/SRP012006/SRS301314/SRX187142/SRR570834/SRR570834.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-11A-01D	DNA	EFO	SRS301314	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F12	SRX187142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52001-FS3_L01.bam	SRR570834	@dbgap@:reads/SRP012006/SRS301314/SRX187142/SRR570834/SRR570834.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-11A-01D	DNA	EFO	SRS301314	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F12	SRX187142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52001-FS3_L01.bam	SRR570834	@dbgap@:reads/SRP012006/SRS301314/SRX187142/SRR570834/SRR570834.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-11A-01D	DNA	EFO	SRS301314	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F12	SRX187142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52001-FS3_L01.bam	SRR570834	@dbgap@:reads/SRP012006/SRS301314/SRX187142/SRR570834/SRR570834.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-11A-01D	DNA	EFO	SRS301314	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F12	SRX187142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52001-FS3_L01.bam	SRR570834	@dbgap@:reads/SRP012006/SRS301314/SRX187142/SRR570834/SRR570834.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PAKZHF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PAKZHF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-11A-01D	DNA	EFO	SRS301314	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F12	SRX187142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52001-FS3_L01.bam	SRR570834	@dbgap@:reads/SRP012006/SRS301314/SRX187142/SRR570834/SRR570834.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-11A-01D	DNA	EFO	SRS301314	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F12	SRX187142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52001-FS3_L01.bam	SRR570834	@dbgap@:reads/SRP012006/SRS301314/SRX187142/SRR570834/SRR570834.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-11A-01D	DNA	EFO	SRS301314	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_F12	SRX187142		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PAKZHF-11A-01D GS01073-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52001-FS3_L01.bam	SRR570834	@dbgap@:reads/SRP012006/SRS301314/SRX187142/SRR570834/SRR570834.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-01A-01D	DNA	EFO	SRS190211	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C02	SRX148708		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39999-FS3_L01.bam	SRR498625	@dbgap@:reads/SRP012006/SRS190211/SRX148708/SRR498625/SRR498625.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PALDWP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALDWP_NormalVsPrimary.png	4			
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-01A-01D	DNA	EFO	SRS190211	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C02	SRX148708		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39999-FS3_L01.bam	SRR498625	@dbgap@:reads/SRP012006/SRS190211/SRX148708/SRR498625/SRR498625.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALDWP_NormalVsPrimary.png	4			
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-01A-01D	DNA	EFO	SRS190211	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C02	SRX148708		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39999-FS3_L01.bam	SRR498625	@dbgap@:reads/SRP012006/SRS190211/SRX148708/SRR498625/SRR498625.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALDWP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALDWP_NormalVsPrimary.png	4			
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-01A-01D	DNA	EFO	SRS190211	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C02	SRX148708		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39999-FS3_L01.bam	SRR498625	@dbgap@:reads/SRP012006/SRS190211/SRX148708/SRR498625/SRR498625.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALDWP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALDWP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PALDWP_NormalVsPrimary.maf.txt	3
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-01A-01D	DNA	EFO	SRS190211	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C02	SRX148708		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39999-FS3_L01.bam	SRR498625	@dbgap@:reads/SRP012006/SRS190211/SRX148708/SRR498625/SRR498625.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALDWP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALDWP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-01A-01D	DNA	EFO	SRS190211	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C02	SRX148708		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39999-FS3_L01.bam	SRR498625	@dbgap@:reads/SRP012006/SRS190211/SRX148708/SRR498625/SRR498625.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALDWP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALDWP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-01A-01D	DNA	EFO	SRS190211	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C02	SRX148708		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39999-FS3_L01.bam	SRR498625	@dbgap@:reads/SRP012006/SRS190211/SRX148708/SRR498625/SRR498625.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALDWP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALDWP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-01A-01D	DNA	EFO	SRS190211	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C02	SRX148708		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39999-FS3_L01.bam	SRR498625	@dbgap@:reads/SRP012006/SRS190211/SRX148708/SRR498625/SRR498625.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALDWP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALDWP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-01A-01D	DNA	EFO	SRS190211	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C02	SRX148708		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39999-FS3_L01.bam	SRR498625	@dbgap@:reads/SRP012006/SRS190211/SRX148708/SRR498625/SRR498625.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALDWP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALDWP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-01A-01D	DNA	EFO	SRS190211	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C02	SRX148708		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39999-FS3_L01.bam	SRR498625	@dbgap@:reads/SRP012006/SRS190211/SRX148708/SRR498625/SRR498625.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALDWP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALDWP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-01A-01D	DNA	EFO	SRS190211	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C02	SRX148708		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39999-FS3_L01.bam	SRR498625	@dbgap@:reads/SRP012006/SRS190211/SRX148708/SRR498625/SRR498625.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALDWP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALDWP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-01A-01D	DNA	EFO	SRS190211	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C02	SRX148708		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39999-FS3_L01.bam	SRR498625	@dbgap@:reads/SRP012006/SRS190211/SRX148708/SRR498625/SRR498625.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALDWP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALDWP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-01A-01D	DNA	EFO	SRS190211	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C02	SRX148708		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39999-FS3_L01.bam	SRR498625	@dbgap@:reads/SRP012006/SRS190211/SRX148708/SRR498625/SRR498625.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-01A-01D	DNA	EFO	SRS190211	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C02	SRX148708		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39999-FS3_L01.bam	SRR498625	@dbgap@:reads/SRP012006/SRS190211/SRX148708/SRR498625/SRR498625.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-01A-01D	DNA	EFO	SRS190211	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C02	SRX148708		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-01A-01D GS00941-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39999-FS3_L01.bam	SRR498625	@dbgap@:reads/SRP012006/SRS190211/SRX148708/SRR498625/SRR498625.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-11A-01D	DNA	EFO	SRS190212	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B04	SRX148707		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40002-FS3_L01.bam	SRR498633	@dbgap@:reads/SRP012006/SRS190212/SRX148707/SRR498633/SRR498633.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PALDWP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALDWP_NormalVsPrimary.png	4			
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-11A-01D	DNA	EFO	SRS190212	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B04	SRX148707		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40002-FS3_L01.bam	SRR498633	@dbgap@:reads/SRP012006/SRS190212/SRX148707/SRR498633/SRR498633.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALDWP_NormalVsPrimary.png	4			
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-11A-01D	DNA	EFO	SRS190212	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B04	SRX148707		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40002-FS3_L01.bam	SRR498633	@dbgap@:reads/SRP012006/SRS190212/SRX148707/SRR498633/SRR498633.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALDWP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALDWP_NormalVsPrimary.png	4			
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-11A-01D	DNA	EFO	SRS190212	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B04	SRX148707		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40002-FS3_L01.bam	SRR498633	@dbgap@:reads/SRP012006/SRS190212/SRX148707/SRR498633/SRR498633.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALDWP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALDWP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PALDWP_NormalVsPrimary.maf.txt	3
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-11A-01D	DNA	EFO	SRS190212	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B04	SRX148707		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40002-FS3_L01.bam	SRR498633	@dbgap@:reads/SRP012006/SRS190212/SRX148707/SRR498633/SRR498633.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALDWP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALDWP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-11A-01D	DNA	EFO	SRS190212	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B04	SRX148707		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40002-FS3_L01.bam	SRR498633	@dbgap@:reads/SRP012006/SRS190212/SRX148707/SRR498633/SRR498633.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALDWP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALDWP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-11A-01D	DNA	EFO	SRS190212	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B04	SRX148707		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40002-FS3_L01.bam	SRR498633	@dbgap@:reads/SRP012006/SRS190212/SRX148707/SRR498633/SRR498633.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALDWP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALDWP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-11A-01D	DNA	EFO	SRS190212	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B04	SRX148707		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40002-FS3_L01.bam	SRR498633	@dbgap@:reads/SRP012006/SRS190212/SRX148707/SRR498633/SRR498633.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALDWP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALDWP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-11A-01D	DNA	EFO	SRS190212	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B04	SRX148707		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40002-FS3_L01.bam	SRR498633	@dbgap@:reads/SRP012006/SRS190212/SRX148707/SRR498633/SRR498633.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALDWP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALDWP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-11A-01D	DNA	EFO	SRS190212	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B04	SRX148707		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40002-FS3_L01.bam	SRR498633	@dbgap@:reads/SRP012006/SRS190212/SRX148707/SRR498633/SRR498633.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALDWP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALDWP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-11A-01D	DNA	EFO	SRS190212	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B04	SRX148707		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40002-FS3_L01.bam	SRR498633	@dbgap@:reads/SRP012006/SRS190212/SRX148707/SRR498633/SRR498633.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALDWP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALDWP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-11A-01D	DNA	EFO	SRS190212	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B04	SRX148707		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40002-FS3_L01.bam	SRR498633	@dbgap@:reads/SRP012006/SRS190212/SRX148707/SRR498633/SRR498633.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALDWP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALDWP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-11A-01D	DNA	EFO	SRS190212	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B04	SRX148707		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40002-FS3_L01.bam	SRR498633	@dbgap@:reads/SRP012006/SRS190212/SRX148707/SRR498633/SRR498633.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-11A-01D	DNA	EFO	SRS190212	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B04	SRX148707		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40002-FS3_L01.bam	SRR498633	@dbgap@:reads/SRP012006/SRS190212/SRX148707/SRR498633/SRR498633.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-11A-01D	DNA	EFO	SRS190212	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_B04	SRX148707		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALDWP-11A-01D GS00941-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40002-FS3_L01.bam	SRR498633	@dbgap@:reads/SRP012006/SRS190212/SRX148707/SRR498633/SRR498633.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-01A-01D	DNA	EFO	SRS301317	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-01A-01D GS01073-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A10	SRX202109		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-01A-01D GS01073-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52340-FS3_L01.bam	SRR610198	@dbgap@:reads/SRP012006/SRS301317/SRX202109/SRR610198/SRR610198.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PALERC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALERC_NormalVsPrimary.png	4			
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-01A-01D	DNA	EFO	SRS301317	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-01A-01D GS01073-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A10	SRX202109		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-01A-01D GS01073-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52340-FS3_L01.bam	SRR610198	@dbgap@:reads/SRP012006/SRS301317/SRX202109/SRR610198/SRR610198.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALERC_NormalVsPrimary.png	4			
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-01A-01D	DNA	EFO	SRS301317	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-01A-01D GS01073-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A10	SRX202109		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-01A-01D GS01073-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52340-FS3_L01.bam	SRR610198	@dbgap@:reads/SRP012006/SRS301317/SRX202109/SRR610198/SRR610198.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALERC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALERC_NormalVsPrimary.png	4			
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-01A-01D	DNA	EFO	SRS301317	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-01A-01D GS01073-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A10	SRX202109		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-01A-01D GS01073-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52340-FS3_L01.bam	SRR610198	@dbgap@:reads/SRP012006/SRS301317/SRX202109/SRR610198/SRR610198.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALERC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALERC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PALERC_NormalVsPrimary.maf.txt	3
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-01A-01D	DNA	EFO	SRS301317	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-01A-01D GS01073-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A10	SRX202109		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-01A-01D GS01073-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52340-FS3_L01.bam	SRR610198	@dbgap@:reads/SRP012006/SRS301317/SRX202109/SRR610198/SRR610198.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALERC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALERC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-01A-01D	DNA	EFO	SRS301317	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-01A-01D GS01073-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A10	SRX202109		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-01A-01D GS01073-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52340-FS3_L01.bam	SRR610198	@dbgap@:reads/SRP012006/SRS301317/SRX202109/SRR610198/SRR610198.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALERC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALERC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-01A-01D	DNA	EFO	SRS301317	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-01A-01D GS01073-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A10	SRX202109		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-01A-01D GS01073-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52340-FS3_L01.bam	SRR610198	@dbgap@:reads/SRP012006/SRS301317/SRX202109/SRR610198/SRR610198.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALERC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALERC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-01A-01D	DNA	EFO	SRS301317	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-01A-01D GS01073-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A10	SRX202109		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-01A-01D GS01073-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52340-FS3_L01.bam	SRR610198	@dbgap@:reads/SRP012006/SRS301317/SRX202109/SRR610198/SRR610198.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALERC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALERC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-01A-01D	DNA	EFO	SRS301317	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-01A-01D GS01073-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A10	SRX202109		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-01A-01D GS01073-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52340-FS3_L01.bam	SRR610198	@dbgap@:reads/SRP012006/SRS301317/SRX202109/SRR610198/SRR610198.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALERC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALERC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-01A-01D	DNA	EFO	SRS301317	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-01A-01D GS01073-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A10	SRX202109		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-01A-01D GS01073-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52340-FS3_L01.bam	SRR610198	@dbgap@:reads/SRP012006/SRS301317/SRX202109/SRR610198/SRR610198.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALERC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALERC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-01A-01D	DNA	EFO	SRS301317	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-01A-01D GS01073-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A10	SRX202109		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-01A-01D GS01073-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52340-FS3_L01.bam	SRR610198	@dbgap@:reads/SRP012006/SRS301317/SRX202109/SRR610198/SRR610198.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALERC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALERC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-01A-01D	DNA	EFO	SRS301317	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-01A-01D GS01073-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A10	SRX202109		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-01A-01D GS01073-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52340-FS3_L01.bam	SRR610198	@dbgap@:reads/SRP012006/SRS301317/SRX202109/SRR610198/SRR610198.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALERC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALERC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-01A-01D	DNA	EFO	SRS301317	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-01A-01D GS01073-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A10	SRX202109		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-01A-01D GS01073-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52340-FS3_L01.bam	SRR610198	@dbgap@:reads/SRP012006/SRS301317/SRX202109/SRR610198/SRR610198.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-01A-01D	DNA	EFO	SRS301317	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-01A-01D GS01073-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A10	SRX202109		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-01A-01D GS01073-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52340-FS3_L01.bam	SRR610198	@dbgap@:reads/SRP012006/SRS301317/SRX202109/SRR610198/SRR610198.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-01A-01D	DNA	EFO	SRS301317	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-01A-01D GS01073-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_A10	SRX202109		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-01A-01D GS01073-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52340-FS3_L01.bam	SRR610198	@dbgap@:reads/SRP012006/SRS301317/SRX202109/SRR610198/SRR610198.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-11A-01D	DNA	EFO	SRS373606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-11A-01D GS01073-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G12	SRX202108		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-11A-01D GS01073-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51927-FS3_L01.bam	SRR610206	@dbgap@:reads/SRP012006/SRS373606/SRX202108/SRR610206/SRR610206.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PALERC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALERC_NormalVsPrimary.png	4			
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-11A-01D	DNA	EFO	SRS373606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-11A-01D GS01073-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G12	SRX202108		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-11A-01D GS01073-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51927-FS3_L01.bam	SRR610206	@dbgap@:reads/SRP012006/SRS373606/SRX202108/SRR610206/SRR610206.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALERC_NormalVsPrimary.png	4			
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-11A-01D	DNA	EFO	SRS373606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-11A-01D GS01073-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G12	SRX202108		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-11A-01D GS01073-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51927-FS3_L01.bam	SRR610206	@dbgap@:reads/SRP012006/SRS373606/SRX202108/SRR610206/SRR610206.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALERC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALERC_NormalVsPrimary.png	4			
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-11A-01D	DNA	EFO	SRS373606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-11A-01D GS01073-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G12	SRX202108		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-11A-01D GS01073-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51927-FS3_L01.bam	SRR610206	@dbgap@:reads/SRP012006/SRS373606/SRX202108/SRR610206/SRR610206.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALERC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALERC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PALERC_NormalVsPrimary.maf.txt	3
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-11A-01D	DNA	EFO	SRS373606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-11A-01D GS01073-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G12	SRX202108		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-11A-01D GS01073-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51927-FS3_L01.bam	SRR610206	@dbgap@:reads/SRP012006/SRS373606/SRX202108/SRR610206/SRR610206.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALERC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALERC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-11A-01D	DNA	EFO	SRS373606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-11A-01D GS01073-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G12	SRX202108		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-11A-01D GS01073-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51927-FS3_L01.bam	SRR610206	@dbgap@:reads/SRP012006/SRS373606/SRX202108/SRR610206/SRR610206.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALERC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALERC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-11A-01D	DNA	EFO	SRS373606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-11A-01D GS01073-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G12	SRX202108		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-11A-01D GS01073-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51927-FS3_L01.bam	SRR610206	@dbgap@:reads/SRP012006/SRS373606/SRX202108/SRR610206/SRR610206.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALERC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALERC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-11A-01D	DNA	EFO	SRS373606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-11A-01D GS01073-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G12	SRX202108		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-11A-01D GS01073-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51927-FS3_L01.bam	SRR610206	@dbgap@:reads/SRP012006/SRS373606/SRX202108/SRR610206/SRR610206.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALERC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALERC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-11A-01D	DNA	EFO	SRS373606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-11A-01D GS01073-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G12	SRX202108		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-11A-01D GS01073-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51927-FS3_L01.bam	SRR610206	@dbgap@:reads/SRP012006/SRS373606/SRX202108/SRR610206/SRR610206.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALERC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALERC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-11A-01D	DNA	EFO	SRS373606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-11A-01D GS01073-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G12	SRX202108		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-11A-01D GS01073-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51927-FS3_L01.bam	SRR610206	@dbgap@:reads/SRP012006/SRS373606/SRX202108/SRR610206/SRR610206.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALERC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALERC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-11A-01D	DNA	EFO	SRS373606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-11A-01D GS01073-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G12	SRX202108		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-11A-01D GS01073-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51927-FS3_L01.bam	SRR610206	@dbgap@:reads/SRP012006/SRS373606/SRX202108/SRR610206/SRR610206.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALERC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALERC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-11A-01D	DNA	EFO	SRS373606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-11A-01D GS01073-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G12	SRX202108		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-11A-01D GS01073-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51927-FS3_L01.bam	SRR610206	@dbgap@:reads/SRP012006/SRS373606/SRX202108/SRR610206/SRR610206.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALERC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALERC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-11A-01D	DNA	EFO	SRS373606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-11A-01D GS01073-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G12	SRX202108		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-11A-01D GS01073-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51927-FS3_L01.bam	SRR610206	@dbgap@:reads/SRP012006/SRS373606/SRX202108/SRR610206/SRR610206.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-11A-01D	DNA	EFO	SRS373606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-11A-01D GS01073-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G12	SRX202108		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-11A-01D GS01073-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51927-FS3_L01.bam	SRR610206	@dbgap@:reads/SRP012006/SRS373606/SRX202108/SRR610206/SRR610206.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-11A-01D	DNA	EFO	SRS373606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALERC-11A-01D GS01073-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01073-CLS_G12	SRX202108		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALERC-11A-01D GS01073-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51927-FS3_L01.bam	SRR610206	@dbgap@:reads/SRP012006/SRS373606/SRX202108/SRR610206/SRR610206.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-01A-01D	DNA	EFO	SRS190213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D02	SRX147687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43546-FS3_L01.bam	SRR496420	@dbgap@:reads/SRP012006/SRS190213/SRX147687/SRR496420/SRR496420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PALEZT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALEZT_NormalVsPrimary.png	4			
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-01A-01D	DNA	EFO	SRS190213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D02	SRX147687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43546-FS3_L01.bam	SRR496420	@dbgap@:reads/SRP012006/SRS190213/SRX147687/SRR496420/SRR496420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALEZT_NormalVsPrimary.png	4			
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-01A-01D	DNA	EFO	SRS190213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D02	SRX147687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43546-FS3_L01.bam	SRR496420	@dbgap@:reads/SRP012006/SRS190213/SRX147687/SRR496420/SRR496420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALEZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALEZT_NormalVsPrimary.png	4			
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-01A-01D	DNA	EFO	SRS190213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D02	SRX147687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43546-FS3_L01.bam	SRR496420	@dbgap@:reads/SRP012006/SRS190213/SRX147687/SRR496420/SRR496420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALEZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALEZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PALEZT_NormalVsPrimary.maf.txt	3
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-01A-01D	DNA	EFO	SRS190213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D02	SRX147687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43546-FS3_L01.bam	SRR496420	@dbgap@:reads/SRP012006/SRS190213/SRX147687/SRR496420/SRR496420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALEZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALEZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-01A-01D	DNA	EFO	SRS190213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D02	SRX147687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43546-FS3_L01.bam	SRR496420	@dbgap@:reads/SRP012006/SRS190213/SRX147687/SRR496420/SRR496420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALEZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALEZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-01A-01D	DNA	EFO	SRS190213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D02	SRX147687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43546-FS3_L01.bam	SRR496420	@dbgap@:reads/SRP012006/SRS190213/SRX147687/SRR496420/SRR496420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALEZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALEZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-01A-01D	DNA	EFO	SRS190213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D02	SRX147687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43546-FS3_L01.bam	SRR496420	@dbgap@:reads/SRP012006/SRS190213/SRX147687/SRR496420/SRR496420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALEZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALEZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-01A-01D	DNA	EFO	SRS190213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D02	SRX147687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43546-FS3_L01.bam	SRR496420	@dbgap@:reads/SRP012006/SRS190213/SRX147687/SRR496420/SRR496420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALEZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALEZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-01A-01D	DNA	EFO	SRS190213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D02	SRX147687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43546-FS3_L01.bam	SRR496420	@dbgap@:reads/SRP012006/SRS190213/SRX147687/SRR496420/SRR496420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALEZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALEZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-01A-01D	DNA	EFO	SRS190213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D02	SRX147687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43546-FS3_L01.bam	SRR496420	@dbgap@:reads/SRP012006/SRS190213/SRX147687/SRR496420/SRR496420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALEZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALEZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-01A-01D	DNA	EFO	SRS190213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D02	SRX147687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43546-FS3_L01.bam	SRR496420	@dbgap@:reads/SRP012006/SRS190213/SRX147687/SRR496420/SRR496420.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALEZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALEZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-01A-01D	DNA	EFO	SRS190213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D02	SRX147687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43546-FS3_L01.bam	SRR496420	@dbgap@:reads/SRP012006/SRS190213/SRX147687/SRR496420/SRR496420.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-01A-01D	DNA	EFO	SRS190213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D02	SRX147687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43546-FS3_L01.bam	SRR496420	@dbgap@:reads/SRP012006/SRS190213/SRX147687/SRR496420/SRR496420.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-01A-01D	DNA	EFO	SRS190213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D02	SRX147687		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-01A-01D GS00941-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS43546-FS3_L01.bam	SRR496420	@dbgap@:reads/SRP012006/SRS190213/SRX147687/SRR496420/SRR496420.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-10A-01D	DNA	EFO	SRS190214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C04	SRX147686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39993-FS3_L01.bam	SRR496428	@dbgap@:reads/SRP012006/SRS190214/SRX147686/SRR496428/SRR496428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PALEZT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALEZT_NormalVsPrimary.png	4			
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-10A-01D	DNA	EFO	SRS190214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C04	SRX147686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39993-FS3_L01.bam	SRR496428	@dbgap@:reads/SRP012006/SRS190214/SRX147686/SRR496428/SRR496428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALEZT_NormalVsPrimary.png	4			
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-10A-01D	DNA	EFO	SRS190214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C04	SRX147686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39993-FS3_L01.bam	SRR496428	@dbgap@:reads/SRP012006/SRS190214/SRX147686/SRR496428/SRR496428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALEZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALEZT_NormalVsPrimary.png	4			
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-10A-01D	DNA	EFO	SRS190214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C04	SRX147686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39993-FS3_L01.bam	SRR496428	@dbgap@:reads/SRP012006/SRS190214/SRX147686/SRR496428/SRR496428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALEZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALEZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PALEZT_NormalVsPrimary.maf.txt	3
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-10A-01D	DNA	EFO	SRS190214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C04	SRX147686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39993-FS3_L01.bam	SRR496428	@dbgap@:reads/SRP012006/SRS190214/SRX147686/SRR496428/SRR496428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALEZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALEZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-10A-01D	DNA	EFO	SRS190214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C04	SRX147686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39993-FS3_L01.bam	SRR496428	@dbgap@:reads/SRP012006/SRS190214/SRX147686/SRR496428/SRR496428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALEZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALEZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-10A-01D	DNA	EFO	SRS190214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C04	SRX147686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39993-FS3_L01.bam	SRR496428	@dbgap@:reads/SRP012006/SRS190214/SRX147686/SRR496428/SRR496428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALEZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALEZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-10A-01D	DNA	EFO	SRS190214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C04	SRX147686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39993-FS3_L01.bam	SRR496428	@dbgap@:reads/SRP012006/SRS190214/SRX147686/SRR496428/SRR496428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALEZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALEZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-10A-01D	DNA	EFO	SRS190214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C04	SRX147686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39993-FS3_L01.bam	SRR496428	@dbgap@:reads/SRP012006/SRS190214/SRX147686/SRR496428/SRR496428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALEZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALEZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-10A-01D	DNA	EFO	SRS190214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C04	SRX147686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39993-FS3_L01.bam	SRR496428	@dbgap@:reads/SRP012006/SRS190214/SRX147686/SRR496428/SRR496428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALEZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALEZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-10A-01D	DNA	EFO	SRS190214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C04	SRX147686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39993-FS3_L01.bam	SRR496428	@dbgap@:reads/SRP012006/SRS190214/SRX147686/SRR496428/SRR496428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALEZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALEZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-10A-01D	DNA	EFO	SRS190214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C04	SRX147686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39993-FS3_L01.bam	SRR496428	@dbgap@:reads/SRP012006/SRS190214/SRX147686/SRR496428/SRR496428.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALEZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALEZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-10A-01D	DNA	EFO	SRS190214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C04	SRX147686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39993-FS3_L01.bam	SRR496428	@dbgap@:reads/SRP012006/SRS190214/SRX147686/SRR496428/SRR496428.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-10A-01D	DNA	EFO	SRS190214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C04	SRX147686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39993-FS3_L01.bam	SRR496428	@dbgap@:reads/SRP012006/SRS190214/SRX147686/SRR496428/SRR496428.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-10A-01D	DNA	EFO	SRS190214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_C04	SRX147686		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALEZT-10A-01D GS00941-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39993-FS3_L01.bam	SRR496428	@dbgap@:reads/SRP012006/SRS190214/SRX147686/SRR496428/SRR496428.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-01A-01D	DNA	EFO	SRS190215	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E02	SRX147684		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40818-FS3_L01.bam	SRR496403	@dbgap@:reads/SRP012006/SRS190215/SRX147684/SRR496403/SRR496403.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PALGAZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALGAZ_NormalVsPrimary.png	4			
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-01A-01D	DNA	EFO	SRS190215	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E02	SRX147684		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40818-FS3_L01.bam	SRR496403	@dbgap@:reads/SRP012006/SRS190215/SRX147684/SRR496403/SRR496403.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALGAZ_NormalVsPrimary.png	4			
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-01A-01D	DNA	EFO	SRS190215	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E02	SRX147684		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40818-FS3_L01.bam	SRR496403	@dbgap@:reads/SRP012006/SRS190215/SRX147684/SRR496403/SRR496403.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGAZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALGAZ_NormalVsPrimary.png	4			
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-01A-01D	DNA	EFO	SRS190215	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E02	SRX147684		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40818-FS3_L01.bam	SRR496403	@dbgap@:reads/SRP012006/SRS190215/SRX147684/SRR496403/SRR496403.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGAZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGAZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PALGAZ_NormalVsPrimary.maf.txt	3
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-01A-01D	DNA	EFO	SRS190215	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E02	SRX147684		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40818-FS3_L01.bam	SRR496403	@dbgap@:reads/SRP012006/SRS190215/SRX147684/SRR496403/SRR496403.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGAZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGAZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-01A-01D	DNA	EFO	SRS190215	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E02	SRX147684		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40818-FS3_L01.bam	SRR496403	@dbgap@:reads/SRP012006/SRS190215/SRX147684/SRR496403/SRR496403.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGAZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGAZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-01A-01D	DNA	EFO	SRS190215	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E02	SRX147684		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40818-FS3_L01.bam	SRR496403	@dbgap@:reads/SRP012006/SRS190215/SRX147684/SRR496403/SRR496403.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGAZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGAZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-01A-01D	DNA	EFO	SRS190215	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E02	SRX147684		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40818-FS3_L01.bam	SRR496403	@dbgap@:reads/SRP012006/SRS190215/SRX147684/SRR496403/SRR496403.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGAZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGAZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-01A-01D	DNA	EFO	SRS190215	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E02	SRX147684		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40818-FS3_L01.bam	SRR496403	@dbgap@:reads/SRP012006/SRS190215/SRX147684/SRR496403/SRR496403.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGAZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGAZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-01A-01D	DNA	EFO	SRS190215	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E02	SRX147684		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40818-FS3_L01.bam	SRR496403	@dbgap@:reads/SRP012006/SRS190215/SRX147684/SRR496403/SRR496403.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGAZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGAZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-01A-01D	DNA	EFO	SRS190215	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E02	SRX147684		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40818-FS3_L01.bam	SRR496403	@dbgap@:reads/SRP012006/SRS190215/SRX147684/SRR496403/SRR496403.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGAZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGAZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-01A-01D	DNA	EFO	SRS190215	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E02	SRX147684		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40818-FS3_L01.bam	SRR496403	@dbgap@:reads/SRP012006/SRS190215/SRX147684/SRR496403/SRR496403.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGAZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGAZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-01A-01D	DNA	EFO	SRS190215	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E02	SRX147684		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40818-FS3_L01.bam	SRR496403	@dbgap@:reads/SRP012006/SRS190215/SRX147684/SRR496403/SRR496403.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-01A-01D	DNA	EFO	SRS190215	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E02	SRX147684		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40818-FS3_L01.bam	SRR496403	@dbgap@:reads/SRP012006/SRS190215/SRX147684/SRR496403/SRR496403.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-01A-01D	DNA	EFO	SRS190215	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E02	SRX147684		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-01A-01D GS00941-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40818-FS3_L01.bam	SRR496403	@dbgap@:reads/SRP012006/SRS190215/SRX147684/SRR496403/SRR496403.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-10A-01D	DNA	EFO	SRS190216	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D04	SRX147683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40819-FS3_L01.bam	SRR496411	@dbgap@:reads/SRP012006/SRS190216/SRX147683/SRR496411/SRR496411.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PALGAZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALGAZ_NormalVsPrimary.png	4			
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-10A-01D	DNA	EFO	SRS190216	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D04	SRX147683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40819-FS3_L01.bam	SRR496411	@dbgap@:reads/SRP012006/SRS190216/SRX147683/SRR496411/SRR496411.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALGAZ_NormalVsPrimary.png	4			
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-10A-01D	DNA	EFO	SRS190216	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D04	SRX147683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40819-FS3_L01.bam	SRR496411	@dbgap@:reads/SRP012006/SRS190216/SRX147683/SRR496411/SRR496411.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGAZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALGAZ_NormalVsPrimary.png	4			
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-10A-01D	DNA	EFO	SRS190216	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D04	SRX147683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40819-FS3_L01.bam	SRR496411	@dbgap@:reads/SRP012006/SRS190216/SRX147683/SRR496411/SRR496411.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGAZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGAZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PALGAZ_NormalVsPrimary.maf.txt	3
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-10A-01D	DNA	EFO	SRS190216	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D04	SRX147683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40819-FS3_L01.bam	SRR496411	@dbgap@:reads/SRP012006/SRS190216/SRX147683/SRR496411/SRR496411.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGAZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGAZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-10A-01D	DNA	EFO	SRS190216	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D04	SRX147683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40819-FS3_L01.bam	SRR496411	@dbgap@:reads/SRP012006/SRS190216/SRX147683/SRR496411/SRR496411.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGAZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGAZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-10A-01D	DNA	EFO	SRS190216	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D04	SRX147683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40819-FS3_L01.bam	SRR496411	@dbgap@:reads/SRP012006/SRS190216/SRX147683/SRR496411/SRR496411.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGAZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGAZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-10A-01D	DNA	EFO	SRS190216	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D04	SRX147683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40819-FS3_L01.bam	SRR496411	@dbgap@:reads/SRP012006/SRS190216/SRX147683/SRR496411/SRR496411.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGAZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGAZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-10A-01D	DNA	EFO	SRS190216	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D04	SRX147683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40819-FS3_L01.bam	SRR496411	@dbgap@:reads/SRP012006/SRS190216/SRX147683/SRR496411/SRR496411.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGAZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGAZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-10A-01D	DNA	EFO	SRS190216	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D04	SRX147683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40819-FS3_L01.bam	SRR496411	@dbgap@:reads/SRP012006/SRS190216/SRX147683/SRR496411/SRR496411.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGAZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGAZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-10A-01D	DNA	EFO	SRS190216	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D04	SRX147683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40819-FS3_L01.bam	SRR496411	@dbgap@:reads/SRP012006/SRS190216/SRX147683/SRR496411/SRR496411.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGAZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGAZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-10A-01D	DNA	EFO	SRS190216	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D04	SRX147683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40819-FS3_L01.bam	SRR496411	@dbgap@:reads/SRP012006/SRS190216/SRX147683/SRR496411/SRR496411.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGAZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGAZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-10A-01D	DNA	EFO	SRS190216	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D04	SRX147683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40819-FS3_L01.bam	SRR496411	@dbgap@:reads/SRP012006/SRS190216/SRX147683/SRR496411/SRR496411.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-10A-01D	DNA	EFO	SRS190216	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D04	SRX147683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40819-FS3_L01.bam	SRR496411	@dbgap@:reads/SRP012006/SRS190216/SRX147683/SRR496411/SRR496411.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-10A-01D	DNA	EFO	SRS190216	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_D04	SRX147683		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGAZ-10A-01D GS00941-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS40819-FS3_L01.bam	SRR496411	@dbgap@:reads/SRP012006/SRS190216/SRX147683/SRR496411/SRR496411.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-01A-01D	DNA	EFO	SRS190217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F02	SRX148144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42580-FS3_L01.bam	SRR497050	@dbgap@:reads/SRP012006/SRS190217/SRX148144/SRR497050/SRR497050.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PALGVY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALGVY_NormalVsPrimary.png	4			
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-01A-01D	DNA	EFO	SRS190217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F02	SRX148144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42580-FS3_L01.bam	SRR497050	@dbgap@:reads/SRP012006/SRS190217/SRX148144/SRR497050/SRR497050.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALGVY_NormalVsPrimary.png	4			
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-01A-01D	DNA	EFO	SRS190217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F02	SRX148144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42580-FS3_L01.bam	SRR497050	@dbgap@:reads/SRP012006/SRS190217/SRX148144/SRR497050/SRR497050.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGVY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALGVY_NormalVsPrimary.png	4			
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-01A-01D	DNA	EFO	SRS190217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F02	SRX148144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42580-FS3_L01.bam	SRR497050	@dbgap@:reads/SRP012006/SRS190217/SRX148144/SRR497050/SRR497050.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGVY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGVY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PALGVY_NormalVsPrimary.maf.txt	3
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-01A-01D	DNA	EFO	SRS190217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F02	SRX148144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42580-FS3_L01.bam	SRR497050	@dbgap@:reads/SRP012006/SRS190217/SRX148144/SRR497050/SRR497050.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGVY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGVY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-01A-01D	DNA	EFO	SRS190217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F02	SRX148144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42580-FS3_L01.bam	SRR497050	@dbgap@:reads/SRP012006/SRS190217/SRX148144/SRR497050/SRR497050.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGVY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGVY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-01A-01D	DNA	EFO	SRS190217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F02	SRX148144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42580-FS3_L01.bam	SRR497050	@dbgap@:reads/SRP012006/SRS190217/SRX148144/SRR497050/SRR497050.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGVY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGVY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-01A-01D	DNA	EFO	SRS190217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F02	SRX148144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42580-FS3_L01.bam	SRR497050	@dbgap@:reads/SRP012006/SRS190217/SRX148144/SRR497050/SRR497050.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGVY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGVY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-01A-01D	DNA	EFO	SRS190217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F02	SRX148144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42580-FS3_L01.bam	SRR497050	@dbgap@:reads/SRP012006/SRS190217/SRX148144/SRR497050/SRR497050.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGVY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGVY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-01A-01D	DNA	EFO	SRS190217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F02	SRX148144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42580-FS3_L01.bam	SRR497050	@dbgap@:reads/SRP012006/SRS190217/SRX148144/SRR497050/SRR497050.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGVY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGVY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-01A-01D	DNA	EFO	SRS190217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F02	SRX148144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42580-FS3_L01.bam	SRR497050	@dbgap@:reads/SRP012006/SRS190217/SRX148144/SRR497050/SRR497050.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGVY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGVY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-01A-01D	DNA	EFO	SRS190217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F02	SRX148144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42580-FS3_L01.bam	SRR497050	@dbgap@:reads/SRP012006/SRS190217/SRX148144/SRR497050/SRR497050.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGVY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGVY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-01A-01D	DNA	EFO	SRS190217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F02	SRX148144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42580-FS3_L01.bam	SRR497050	@dbgap@:reads/SRP012006/SRS190217/SRX148144/SRR497050/SRR497050.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-01A-01D	DNA	EFO	SRS190217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F02	SRX148144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42580-FS3_L01.bam	SRR497050	@dbgap@:reads/SRP012006/SRS190217/SRX148144/SRR497050/SRR497050.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-01A-01D	DNA	EFO	SRS190217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_F02	SRX148144		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-01A-01D GS00941-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42580-FS3_L01.bam	SRR497050	@dbgap@:reads/SRP012006/SRS190217/SRX148144/SRR497050/SRR497050.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-10A-01D	DNA	EFO	SRS190218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E04	SRX148143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42579-FS3_L01.bam	SRR497058	@dbgap@:reads/SRP012006/SRS190218/SRX148143/SRR497058/SRR497058.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PALGVY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALGVY_NormalVsPrimary.png	4			
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-10A-01D	DNA	EFO	SRS190218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E04	SRX148143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42579-FS3_L01.bam	SRR497058	@dbgap@:reads/SRP012006/SRS190218/SRX148143/SRR497058/SRR497058.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALGVY_NormalVsPrimary.png	4			
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-10A-01D	DNA	EFO	SRS190218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E04	SRX148143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42579-FS3_L01.bam	SRR497058	@dbgap@:reads/SRP012006/SRS190218/SRX148143/SRR497058/SRR497058.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGVY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALGVY_NormalVsPrimary.png	4			
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-10A-01D	DNA	EFO	SRS190218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E04	SRX148143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42579-FS3_L01.bam	SRR497058	@dbgap@:reads/SRP012006/SRS190218/SRX148143/SRR497058/SRR497058.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGVY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGVY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PALGVY_NormalVsPrimary.maf.txt	3
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-10A-01D	DNA	EFO	SRS190218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E04	SRX148143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42579-FS3_L01.bam	SRR497058	@dbgap@:reads/SRP012006/SRS190218/SRX148143/SRR497058/SRR497058.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGVY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGVY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-10A-01D	DNA	EFO	SRS190218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E04	SRX148143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42579-FS3_L01.bam	SRR497058	@dbgap@:reads/SRP012006/SRS190218/SRX148143/SRR497058/SRR497058.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGVY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGVY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-10A-01D	DNA	EFO	SRS190218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E04	SRX148143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42579-FS3_L01.bam	SRR497058	@dbgap@:reads/SRP012006/SRS190218/SRX148143/SRR497058/SRR497058.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGVY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGVY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-10A-01D	DNA	EFO	SRS190218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E04	SRX148143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42579-FS3_L01.bam	SRR497058	@dbgap@:reads/SRP012006/SRS190218/SRX148143/SRR497058/SRR497058.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGVY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGVY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-10A-01D	DNA	EFO	SRS190218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E04	SRX148143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42579-FS3_L01.bam	SRR497058	@dbgap@:reads/SRP012006/SRS190218/SRX148143/SRR497058/SRR497058.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGVY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGVY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-10A-01D	DNA	EFO	SRS190218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E04	SRX148143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42579-FS3_L01.bam	SRR497058	@dbgap@:reads/SRP012006/SRS190218/SRX148143/SRR497058/SRR497058.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGVY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGVY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-10A-01D	DNA	EFO	SRS190218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E04	SRX148143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42579-FS3_L01.bam	SRR497058	@dbgap@:reads/SRP012006/SRS190218/SRX148143/SRR497058/SRR497058.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGVY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGVY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-10A-01D	DNA	EFO	SRS190218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E04	SRX148143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42579-FS3_L01.bam	SRR497058	@dbgap@:reads/SRP012006/SRS190218/SRX148143/SRR497058/SRR497058.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALGVY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALGVY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-10A-01D	DNA	EFO	SRS190218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E04	SRX148143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42579-FS3_L01.bam	SRR497058	@dbgap@:reads/SRP012006/SRS190218/SRX148143/SRR497058/SRR497058.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-10A-01D	DNA	EFO	SRS190218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E04	SRX148143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42579-FS3_L01.bam	SRR497058	@dbgap@:reads/SRP012006/SRS190218/SRX148143/SRR497058/SRR497058.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-10A-01D	DNA	EFO	SRS190218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM	GS00941-CLS_E04	SRX148143		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALGVY-10A-01D GS00941-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42579-FS3_L01.bam	SRR497058	@dbgap@:reads/SRP012006/SRS190218/SRX148143/SRR497058/SRR497058.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-01A-01D	DNA	EFO	SRS489834	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F06	SRX363102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64953-FS3_L01.bam	SRR1008037	@dbgap@:reads/SRP012006/SRS489834/SRX363102/SRR1008037/SRR1008037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PALKCW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALKCW_NormalVsPrimary.png	4			
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-01A-01D	DNA	EFO	SRS489834	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F06	SRX363102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64953-FS3_L01.bam	SRR1008037	@dbgap@:reads/SRP012006/SRS489834/SRX363102/SRR1008037/SRR1008037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALKCW_NormalVsPrimary.png	4			
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-01A-01D	DNA	EFO	SRS489834	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F06	SRX363102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64953-FS3_L01.bam	SRR1008037	@dbgap@:reads/SRP012006/SRS489834/SRX363102/SRR1008037/SRR1008037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKCW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALKCW_NormalVsPrimary.png	4			
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-01A-01D	DNA	EFO	SRS489834	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F06	SRX363102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64953-FS3_L01.bam	SRR1008037	@dbgap@:reads/SRP012006/SRS489834/SRX363102/SRR1008037/SRR1008037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKCW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKCW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PALKCW_NormalVsPrimary.maf.txt	3
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-01A-01D	DNA	EFO	SRS489834	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F06	SRX363102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64953-FS3_L01.bam	SRR1008037	@dbgap@:reads/SRP012006/SRS489834/SRX363102/SRR1008037/SRR1008037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKCW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKCW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-01A-01D	DNA	EFO	SRS489834	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F06	SRX363102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64953-FS3_L01.bam	SRR1008037	@dbgap@:reads/SRP012006/SRS489834/SRX363102/SRR1008037/SRR1008037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKCW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKCW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-01A-01D	DNA	EFO	SRS489834	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F06	SRX363102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64953-FS3_L01.bam	SRR1008037	@dbgap@:reads/SRP012006/SRS489834/SRX363102/SRR1008037/SRR1008037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKCW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKCW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-01A-01D	DNA	EFO	SRS489834	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F06	SRX363102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64953-FS3_L01.bam	SRR1008037	@dbgap@:reads/SRP012006/SRS489834/SRX363102/SRR1008037/SRR1008037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKCW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKCW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-01A-01D	DNA	EFO	SRS489834	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F06	SRX363102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64953-FS3_L01.bam	SRR1008037	@dbgap@:reads/SRP012006/SRS489834/SRX363102/SRR1008037/SRR1008037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKCW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKCW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-01A-01D	DNA	EFO	SRS489834	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F06	SRX363102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64953-FS3_L01.bam	SRR1008037	@dbgap@:reads/SRP012006/SRS489834/SRX363102/SRR1008037/SRR1008037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKCW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKCW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-01A-01D	DNA	EFO	SRS489834	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F06	SRX363102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64953-FS3_L01.bam	SRR1008037	@dbgap@:reads/SRP012006/SRS489834/SRX363102/SRR1008037/SRR1008037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKCW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKCW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-01A-01D	DNA	EFO	SRS489834	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F06	SRX363102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64953-FS3_L01.bam	SRR1008037	@dbgap@:reads/SRP012006/SRS489834/SRX363102/SRR1008037/SRR1008037.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKCW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKCW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-01A-01D	DNA	EFO	SRS489834	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F06	SRX363102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64953-FS3_L01.bam	SRR1008037	@dbgap@:reads/SRP012006/SRS489834/SRX363102/SRR1008037/SRR1008037.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-01A-01D	DNA	EFO	SRS489834	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F06	SRX363102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64953-FS3_L01.bam	SRR1008037	@dbgap@:reads/SRP012006/SRS489834/SRX363102/SRR1008037/SRR1008037.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-01A-01D	DNA	EFO	SRS489834	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F06	SRX363102		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-01A-01D GS01103-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64953-FS3_L01.bam	SRR1008037	@dbgap@:reads/SRP012006/SRS489834/SRX363102/SRR1008037/SRR1008037.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-11A-01D	DNA	EFO	SRS489833	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_G12	SRX363101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65824-FS3_L08.bam	SRR1008044	@dbgap@:reads/SRP012006/SRS489833/SRX363101/SRR1008044/SRR1008044.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PALKCW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALKCW_NormalVsPrimary.png	4			
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-11A-01D	DNA	EFO	SRS489833	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_G12	SRX363101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65824-FS3_L08.bam	SRR1008044	@dbgap@:reads/SRP012006/SRS489833/SRX363101/SRR1008044/SRR1008044.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALKCW_NormalVsPrimary.png	4			
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-11A-01D	DNA	EFO	SRS489833	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_G12	SRX363101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65824-FS3_L08.bam	SRR1008044	@dbgap@:reads/SRP012006/SRS489833/SRX363101/SRR1008044/SRR1008044.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKCW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALKCW_NormalVsPrimary.png	4			
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-11A-01D	DNA	EFO	SRS489833	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_G12	SRX363101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65824-FS3_L08.bam	SRR1008044	@dbgap@:reads/SRP012006/SRS489833/SRX363101/SRR1008044/SRR1008044.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKCW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKCW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PALKCW_NormalVsPrimary.maf.txt	3
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-11A-01D	DNA	EFO	SRS489833	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_G12	SRX363101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65824-FS3_L08.bam	SRR1008044	@dbgap@:reads/SRP012006/SRS489833/SRX363101/SRR1008044/SRR1008044.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKCW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKCW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-11A-01D	DNA	EFO	SRS489833	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_G12	SRX363101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65824-FS3_L08.bam	SRR1008044	@dbgap@:reads/SRP012006/SRS489833/SRX363101/SRR1008044/SRR1008044.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKCW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKCW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-11A-01D	DNA	EFO	SRS489833	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_G12	SRX363101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65824-FS3_L08.bam	SRR1008044	@dbgap@:reads/SRP012006/SRS489833/SRX363101/SRR1008044/SRR1008044.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKCW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKCW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-11A-01D	DNA	EFO	SRS489833	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_G12	SRX363101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65824-FS3_L08.bam	SRR1008044	@dbgap@:reads/SRP012006/SRS489833/SRX363101/SRR1008044/SRR1008044.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKCW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKCW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-11A-01D	DNA	EFO	SRS489833	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_G12	SRX363101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65824-FS3_L08.bam	SRR1008044	@dbgap@:reads/SRP012006/SRS489833/SRX363101/SRR1008044/SRR1008044.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKCW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKCW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-11A-01D	DNA	EFO	SRS489833	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_G12	SRX363101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65824-FS3_L08.bam	SRR1008044	@dbgap@:reads/SRP012006/SRS489833/SRX363101/SRR1008044/SRR1008044.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKCW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKCW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-11A-01D	DNA	EFO	SRS489833	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_G12	SRX363101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65824-FS3_L08.bam	SRR1008044	@dbgap@:reads/SRP012006/SRS489833/SRX363101/SRR1008044/SRR1008044.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKCW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKCW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-11A-01D	DNA	EFO	SRS489833	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_G12	SRX363101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65824-FS3_L08.bam	SRR1008044	@dbgap@:reads/SRP012006/SRS489833/SRX363101/SRR1008044/SRR1008044.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKCW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKCW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-11A-01D	DNA	EFO	SRS489833	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_G12	SRX363101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65824-FS3_L08.bam	SRR1008044	@dbgap@:reads/SRP012006/SRS489833/SRX363101/SRR1008044/SRR1008044.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-11A-01D	DNA	EFO	SRS489833	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_G12	SRX363101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65824-FS3_L08.bam	SRR1008044	@dbgap@:reads/SRP012006/SRS489833/SRX363101/SRR1008044/SRR1008044.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-11A-01D	DNA	EFO	SRS489833	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01997-CLS_G12	SRX363101		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKCW-11A-01D GS01997-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65824-FS3_L08.bam	SRR1008044	@dbgap@:reads/SRP012006/SRS489833/SRX363101/SRR1008044/SRR1008044.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E10	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PALKRS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALKRS_NormalVsPrimary.png	4			
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E10	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALKRS_NormalVsPrimary.png	4			
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E10	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALKRS_NormalVsPrimary.png	4			
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E10	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E10	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E10	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E10	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E10	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E10	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E10	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E10	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E10	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E10	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E10	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E10	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00667-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E05	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PALKRS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALKRS_NormalVsPrimary.png	4			
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E05	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALKRS_NormalVsPrimary.png	4			
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E05	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALKRS_NormalVsPrimary.png	4			
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E05	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E05	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E05	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E05	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E05	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E05	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E05	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E05	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E05	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E05	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E05	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_E05	SRX129981		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-01A-01D GS00673-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20485-FS3_L01.bam	SRR445535	@dbgap@:reads/SRP012006/SRS118139/SRX129981/SRR445535/SRR445535.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_E10	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PALKRS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALKRS_NormalVsPrimary.png	4			
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_E10	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALKRS_NormalVsPrimary.png	4			
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_E10	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALKRS_NormalVsPrimary.png	4			
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_E10	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_E10	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_E10	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_E10	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_E10	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_E10	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_E10	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_E10	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_E10	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_E10	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_E10	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_E10	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00669-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D06	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PALKRS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALKRS_NormalVsPrimary.png	4			
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D06	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALKRS_NormalVsPrimary.png	4			
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D06	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALKRS_NormalVsPrimary.png	4			
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D06	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D06	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D06	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D06	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D06	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D06	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D06	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D06	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D06	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D06	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D06	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_D06	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00673-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E11	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PALKRS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALKRS_NormalVsPrimary.png	4			
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E11	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALKRS_NormalVsPrimary.png	4			
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E11	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALKRS_NormalVsPrimary.png	4			
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E11	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E11	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E11	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E11	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E11	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E11	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E11	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E11	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E11	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALKRS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALKRS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E11	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E11	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-10A-01D	DNA	EFO	SRS118140	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_E11	SRX129980		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALKRS-10A-01D GS00667-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20508-FS3_L01.bam	SRR445543	@dbgap@:reads/SRP012006/SRS118140/SRX129980/SRR445543/SRR445543.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H09	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PALLFB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALLFB_NormalVsPrimary.png	4			
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H09	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALLFB_NormalVsPrimary.png	4			
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H09	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALLFB_NormalVsPrimary.png	4			
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H09	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H09	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H09	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H09	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H09	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H09	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H09	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H09	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H09	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H09	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H09	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H09	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00669-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_H05	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PALLFB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALLFB_NormalVsPrimary.png	4			
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_H05	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALLFB_NormalVsPrimary.png	4			
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_H05	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALLFB_NormalVsPrimary.png	4			
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_H05	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_H05	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_H05	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_H05	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_H05	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_H05	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_H05	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_H05	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_H05	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_H05	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_H05	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-01D	DNA	EFO	SRS118141	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM	GS00673-CLS_H05	SRX130111		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-01A-01D GS00673-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS21302-FS3_L01.bam	SRR445958	@dbgap@:reads/SRP012006/SRS118141/SRX130111/SRR445958/SRR445958.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H10	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PALLFB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALLFB_NormalVsPrimary.png	4			
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H10	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALLFB_NormalVsPrimary.png	4			
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H10	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALLFB_NormalVsPrimary.png	4			
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H10	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H10	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H10	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H10	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H10	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H10	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H10	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H10	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H10	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H10	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H10	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS00669-CLS_H10	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00669-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_H11	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-50-PALLFB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALLFB_NormalVsPrimary.png	4			
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_H11	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_WT_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALLFB_NormalVsPrimary.png	4			
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_H11	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-50-PALLFB_NormalVsPrimary.png	4			
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_H11	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_H11	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_H11	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_H11	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_H11	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_H11	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_H11	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_H11	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_H11	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-50-PALLFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-50-PALLFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_WT_Jul_11_2014.tsv	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_H11	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01	TARGET_WT_WGS_CNVLOH.tsv	3						
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_H11	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-StructVariant-CGI:01	TARGET_WT_WGS_SV.tsv	3						
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-11A	organism part	EFO	Normal Tissue	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-11A-01D	DNA	EFO	SRS118142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM	GS00667-CLS_H11	SRX130110		completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-50-PALLFB-11A-01D GS00667-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20716-FS3_L01.bam	SRR445966	@dbgap@:reads/SRP012006/SRS118142/SRX130110/SRR445966/SRR445966.sra	2	GRCh37-lite	stjude.org:Protocol:WGS-VariantCall-CGI:01	TARGET_WT_WGS_Diagnosis_20160615.maf.txt	3						
