Source Name	Provider	Material Type	Term Source REF	Characteristics[Organism]	Term Source REF	Characteristics[Sex]	Term Source REF	Characteristics[DiseaseState]	Term Source REF	Comment[OCG Cohort]	Sample Name	Material Type	Term Source REF	Characteristics[OrganismPart]	Term Source REF	Description	Protocol REF	Performer	Extract Name	Material Type	Term Source REF	Comment[SRA_SAMPLE]	Protocol REF	Performer	Extract Name	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[LIBRARY_SELECTION]	Comment[NOMINAL_LENGTH]	Comment[NOMINAL_SDEV]	Comment[LIBRARY_NAME]	Comment[SRA_EXPERIMENT]	Description	Protocol REF	Performer	Date	Assay Name	Technology Type	Term Source REF	Comment[SPOT_LENGTH]	Protocol REF	Parameter Value[Software Versions]	Scan Name	Comment[SRA_RUN]	Comment[SRA_FILE_URI]	Comment[OCG Data Level]	Comment[QC Warning]	Protocol REF	Derived Array Data File	Comment[SRA_RUN]	Comment[SRA_FILE_URI]	Comment[OCG Data Level]	Comment[ASSEMBLY_NAME]	Protocol REF	Protocol REF	Derived Array Data File	Comment[OCG Data Level]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKSWW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKSWW-03A-02R	RNA	EFO	SRS602200	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKSWW-03A-02R A33587 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33587	SRX547680	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAKSWW-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAKSWW-03A-02R A33587 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2165-1./A33587.fastq	SRR1790984	@dbgap@:reads/SRP011999/SRS602200/SRX547680/SRR1790984/SRR1790984.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_5_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293023	@dbgap@:reads/SRP011999/SRS602200/SRX547680/SRR1293023/SRR1293023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAKSWW-03A-02R.exon.quantification.txt	3			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKSWW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKSWW-03A-02R	RNA	EFO	SRS602200	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKSWW-03A-02R A33587 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33587	SRX547680	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAKSWW-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAKSWW-03A-02R A33587 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2165-1./A33587.fastq	SRR1790984	@dbgap@:reads/SRP011999/SRS602200/SRX547680/SRR1790984/SRR1790984.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_5_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293023	@dbgap@:reads/SRP011999/SRS602200/SRX547680/SRR1293023/SRR1293023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAKSWW-03A-02R.gene.quantification.txt	3			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKSWW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKSWW-03A-02R	RNA	EFO	SRS602200	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKSWW-03A-02R A33587 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33587	SRX547680	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAKSWW-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAKSWW-03A-02R A33587 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2165-1./A33587.fastq	SRR1790984	@dbgap@:reads/SRP011999/SRS602200/SRX547680/SRR1790984/SRR1790984.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_5_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293023	@dbgap@:reads/SRP011999/SRS602200/SRX547680/SRR1293023/SRR1293023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAKSWW-03A-02R.isoform.quantification.txt	3			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKSWW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKSWW-03A-02R	RNA	EFO	SRS602200	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKSWW-03A-02R A33587 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33587	SRX547680	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAKSWW-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAKSWW-03A-02R A33587 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2165-1./A33587.fastq	SRR1790984	@dbgap@:reads/SRP011999/SRS602200/SRX547680/SRR1790984/SRR1790984.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_5_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293023	@dbgap@:reads/SRP011999/SRS602200/SRX547680/SRR1293023/SRR1293023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAKSWW-03A-02R.fusion.vcf	3			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKSWW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKSWW-03A-02R	RNA	EFO	SRS602200	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKSWW-03A-02R A33587 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33587	SRX547680	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAKSWW-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAKSWW-03A-02R A33587 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2165-1./A33587.fastq	SRR1790984	@dbgap@:reads/SRP011999/SRS602200/SRX547680/SRR1790984/SRR1790984.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_5_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293023	@dbgap@:reads/SRP011999/SRS602200/SRX547680/SRR1293023/SRR1293023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAKSWW-03A-02R.indel.vcf	3			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKSWW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKSWW-03A-02R	RNA	EFO	SRS602200	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKSWW-03A-02R A33587 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33587	SRX547680	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAKSWW-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAKSWW-03A-02R A33587 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2165-1./A33587.fastq	SRR1790984	@dbgap@:reads/SRP011999/SRS602200/SRX547680/SRR1790984/SRR1790984.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_5_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293023	@dbgap@:reads/SRP011999/SRS602200/SRX547680/SRR1293023/SRR1293023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAKSWW-03A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKSWW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKSWW-04A-01R	RNA	EFO	SRS602102	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKSWW-04A-01R A32650 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32650	SRX730957	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAKSWW-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAKSWW-04A-01R A32650 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2256-1./A32650.fastq	SRR1791089	@dbgap@:reads/SRP011999/SRS602102/SRX730957/SRR1791089/SRR1791089.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_7_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1610445	@dbgap@:reads/SRP011999/SRS602102/SRX730957/SRR1610445/SRR1610445.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAKSWW-04A-01R.exon.quantification.txt	3			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKSWW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKSWW-04A-01R	RNA	EFO	SRS602102	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKSWW-04A-01R A32650 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32650	SRX730957	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAKSWW-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAKSWW-04A-01R A32650 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2256-1./A32650.fastq	SRR1791089	@dbgap@:reads/SRP011999/SRS602102/SRX730957/SRR1791089/SRR1791089.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_7_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1610445	@dbgap@:reads/SRP011999/SRS602102/SRX730957/SRR1610445/SRR1610445.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAKSWW-04A-01R.gene.quantification.txt	3			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKSWW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKSWW-04A-01R	RNA	EFO	SRS602102	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKSWW-04A-01R A32650 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32650	SRX730957	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAKSWW-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAKSWW-04A-01R A32650 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2256-1./A32650.fastq	SRR1791089	@dbgap@:reads/SRP011999/SRS602102/SRX730957/SRR1791089/SRR1791089.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_7_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1610445	@dbgap@:reads/SRP011999/SRS602102/SRX730957/SRR1610445/SRR1610445.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAKSWW-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKSWW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKSWW-04A-01R	RNA	EFO	SRS602102	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKSWW-04A-01R A32650 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32650	SRX730957	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAKSWW-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAKSWW-04A-01R A32650 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2256-1./A32650.fastq	SRR1791089	@dbgap@:reads/SRP011999/SRS602102/SRX730957/SRR1791089/SRR1791089.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_7_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1610445	@dbgap@:reads/SRP011999/SRS602102/SRX730957/SRR1610445/SRR1610445.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAKSWW-04A-01R.fusion.vcf	3			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKSWW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKSWW-04A-01R	RNA	EFO	SRS602102	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKSWW-04A-01R A32650 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32650	SRX730957	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAKSWW-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAKSWW-04A-01R A32650 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2256-1./A32650.fastq	SRR1791089	@dbgap@:reads/SRP011999/SRS602102/SRX730957/SRR1791089/SRR1791089.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_7_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1610445	@dbgap@:reads/SRP011999/SRS602102/SRX730957/SRR1610445/SRR1610445.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAKSWW-04A-01R.indel.vcf	3			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKSWW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKSWW-04A-01R	RNA	EFO	SRS602102	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKSWW-04A-01R A32650 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32650	SRX730957	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAKSWW-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAKSWW-04A-01R A32650 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2256-1./A32650.fastq	SRR1791089	@dbgap@:reads/SRP011999/SRS602102/SRX730957/SRR1791089/SRR1791089.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_7_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1610445	@dbgap@:reads/SRP011999/SRS602102/SRX730957/SRR1610445/SRR1610445.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAKSWW-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAMXHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMXHJ-09A-01R	RNA	EFO	SRS602182	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMXHJ-09A-01R A32689 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32689	SRX543462	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAMXHJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAMXHJ-09A-01R A32689 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2226-1./A32689.fastq	SRR1791062	@dbgap@:reads/SRP011999/SRS602182/SRX543462/SRR1791062/SRR1791062.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_7_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288087	@dbgap@:reads/SRP011999/SRS602182/SRX543462/SRR1288087/SRR1288087.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAMXHJ-09A-01R.exon.quantification.txt	3			
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAMXHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMXHJ-09A-01R	RNA	EFO	SRS602182	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMXHJ-09A-01R A32689 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32689	SRX543462	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAMXHJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAMXHJ-09A-01R A32689 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2226-1./A32689.fastq	SRR1791062	@dbgap@:reads/SRP011999/SRS602182/SRX543462/SRR1791062/SRR1791062.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_7_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288087	@dbgap@:reads/SRP011999/SRS602182/SRX543462/SRR1288087/SRR1288087.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAMXHJ-09A-01R.gene.quantification.txt	3			
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAMXHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMXHJ-09A-01R	RNA	EFO	SRS602182	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMXHJ-09A-01R A32689 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32689	SRX543462	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAMXHJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAMXHJ-09A-01R A32689 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2226-1./A32689.fastq	SRR1791062	@dbgap@:reads/SRP011999/SRS602182/SRX543462/SRR1791062/SRR1791062.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_7_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288087	@dbgap@:reads/SRP011999/SRS602182/SRX543462/SRR1288087/SRR1288087.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAMXHJ-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAMXHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMXHJ-09A-01R	RNA	EFO	SRS602182	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMXHJ-09A-01R A32689 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32689	SRX543462	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAMXHJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAMXHJ-09A-01R A32689 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2226-1./A32689.fastq	SRR1791062	@dbgap@:reads/SRP011999/SRS602182/SRX543462/SRR1791062/SRR1791062.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_7_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288087	@dbgap@:reads/SRP011999/SRS602182/SRX543462/SRR1288087/SRR1288087.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAMXHJ-09A-01R.fusion.vcf	3			
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAMXHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMXHJ-09A-01R	RNA	EFO	SRS602182	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMXHJ-09A-01R A32689 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32689	SRX543462	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAMXHJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAMXHJ-09A-01R A32689 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2226-1./A32689.fastq	SRR1791062	@dbgap@:reads/SRP011999/SRS602182/SRX543462/SRR1791062/SRR1791062.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_7_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288087	@dbgap@:reads/SRP011999/SRS602182/SRX543462/SRR1288087/SRR1288087.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAMXHJ-09A-01R.indel.vcf	3			
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAMXHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMXHJ-09A-01R	RNA	EFO	SRS602182	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMXHJ-09A-01R A32689 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32689	SRX543462	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAMXHJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAMXHJ-09A-01R A32689 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2226-1./A32689.fastq	SRR1791062	@dbgap@:reads/SRP011999/SRS602182/SRX543462/SRR1791062/SRR1791062.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_7_ATTCCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288087	@dbgap@:reads/SRP011999/SRS602182/SRX543462/SRR1288087/SRR1288087.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAMXHJ-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAMXSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMXSP-09A-01R	RNA	EFO	SRS602167	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMXSP-09A-01R A32690 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32690	SRX543402	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAMXSP-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAMXSP-09A-01R A32690 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2239-1./A32690.fastq	SRR1791018	@dbgap@:reads/SRP011999/SRS602167/SRX543402/SRR1791018/SRR1791018.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_6_CATTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288053	@dbgap@:reads/SRP011999/SRS602167/SRX543402/SRR1288053/SRR1288053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAMXSP-09A-01R.exon.quantification.txt	3			
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAMXSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMXSP-09A-01R	RNA	EFO	SRS602167	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMXSP-09A-01R A32690 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32690	SRX543402	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAMXSP-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAMXSP-09A-01R A32690 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2239-1./A32690.fastq	SRR1791018	@dbgap@:reads/SRP011999/SRS602167/SRX543402/SRR1791018/SRR1791018.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_6_CATTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288053	@dbgap@:reads/SRP011999/SRS602167/SRX543402/SRR1288053/SRR1288053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAMXSP-09A-01R.gene.quantification.txt	3			
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAMXSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMXSP-09A-01R	RNA	EFO	SRS602167	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMXSP-09A-01R A32690 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32690	SRX543402	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAMXSP-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAMXSP-09A-01R A32690 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2239-1./A32690.fastq	SRR1791018	@dbgap@:reads/SRP011999/SRS602167/SRX543402/SRR1791018/SRR1791018.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_6_CATTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288053	@dbgap@:reads/SRP011999/SRS602167/SRX543402/SRR1288053/SRR1288053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAMXSP-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAMXSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMXSP-09A-01R	RNA	EFO	SRS602167	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMXSP-09A-01R A32690 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32690	SRX543402	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAMXSP-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAMXSP-09A-01R A32690 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2239-1./A32690.fastq	SRR1791018	@dbgap@:reads/SRP011999/SRS602167/SRX543402/SRR1791018/SRR1791018.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_6_CATTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288053	@dbgap@:reads/SRP011999/SRS602167/SRX543402/SRR1288053/SRR1288053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAMXSP-09A-01R.fusion.vcf	3			
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAMXSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMXSP-09A-01R	RNA	EFO	SRS602167	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMXSP-09A-01R A32690 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32690	SRX543402	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAMXSP-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAMXSP-09A-01R A32690 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2239-1./A32690.fastq	SRR1791018	@dbgap@:reads/SRP011999/SRS602167/SRX543402/SRR1791018/SRR1791018.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_6_CATTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288053	@dbgap@:reads/SRP011999/SRS602167/SRX543402/SRR1288053/SRR1288053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAMXSP-09A-01R.indel.vcf	3			
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAMXSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMXSP-09A-01R	RNA	EFO	SRS602167	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMXSP-09A-01R A32690 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32690	SRX543402	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAMXSP-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAMXSP-09A-01R A32690 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2239-1./A32690.fastq	SRR1791018	@dbgap@:reads/SRP011999/SRS602167/SRX543402/SRR1791018/SRR1791018.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_6_CATTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288053	@dbgap@:reads/SRP011999/SRS602167/SRX543402/SRR1288053/SRR1288053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAMXSP-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANCVR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANCVR-03A-01R	RNA	EFO	SRS602034	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANCVR-03A-01R A32651 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32651	SRX543395	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANCVR-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANCVR-03A-01R A32651 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2220-1./A32651.fastq	SRR1791069	@dbgap@:reads/SRP011999/SRS602034/SRX543395/SRR1791069/SRR1791069.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_8_GCCGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288009	@dbgap@:reads/SRP011999/SRS602034/SRX543395/SRR1288009/SRR1288009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANCVR-03A-01R.exon.quantification.txt	3			
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANCVR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANCVR-03A-01R	RNA	EFO	SRS602034	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANCVR-03A-01R A32651 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32651	SRX543395	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANCVR-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANCVR-03A-01R A32651 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2220-1./A32651.fastq	SRR1791069	@dbgap@:reads/SRP011999/SRS602034/SRX543395/SRR1791069/SRR1791069.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_8_GCCGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288009	@dbgap@:reads/SRP011999/SRS602034/SRX543395/SRR1288009/SRR1288009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANCVR-03A-01R.gene.quantification.txt	3			
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANCVR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANCVR-03A-01R	RNA	EFO	SRS602034	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANCVR-03A-01R A32651 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32651	SRX543395	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANCVR-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANCVR-03A-01R A32651 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2220-1./A32651.fastq	SRR1791069	@dbgap@:reads/SRP011999/SRS602034/SRX543395/SRR1791069/SRR1791069.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_8_GCCGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288009	@dbgap@:reads/SRP011999/SRS602034/SRX543395/SRR1288009/SRR1288009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANCVR-03A-01R.isoform.quantification.txt	3			
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANCVR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANCVR-03A-01R	RNA	EFO	SRS602034	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANCVR-03A-01R A32651 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32651	SRX543395	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANCVR-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANCVR-03A-01R A32651 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2220-1./A32651.fastq	SRR1791069	@dbgap@:reads/SRP011999/SRS602034/SRX543395/SRR1791069/SRR1791069.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_8_GCCGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288009	@dbgap@:reads/SRP011999/SRS602034/SRX543395/SRR1288009/SRR1288009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANCVR-03A-01R.fusion.vcf	3			
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANCVR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANCVR-03A-01R	RNA	EFO	SRS602034	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANCVR-03A-01R A32651 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32651	SRX543395	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANCVR-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANCVR-03A-01R A32651 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2220-1./A32651.fastq	SRR1791069	@dbgap@:reads/SRP011999/SRS602034/SRX543395/SRR1791069/SRR1791069.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_8_GCCGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288009	@dbgap@:reads/SRP011999/SRS602034/SRX543395/SRR1288009/SRR1288009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANCVR-03A-01R.indel.vcf	3			
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANCVR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANCVR-03A-01R	RNA	EFO	SRS602034	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANCVR-03A-01R A32651 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32651	SRX543395	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANCVR-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANCVR-03A-01R A32651 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2220-1./A32651.fastq	SRR1791069	@dbgap@:reads/SRP011999/SRS602034/SRX543395/SRR1791069/SRR1791069.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_8_GCCGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288009	@dbgap@:reads/SRP011999/SRS602034/SRX543395/SRR1288009/SRR1288009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANCVR-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANCVR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANCVR-04A-02R	RNA	EFO	SRS602236	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANCVR-04A-02R A33586 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33586	SRX547671	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANCVR-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANCVR-04A-02R A33586 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2185-1./A33586.fastq	SRR1790992	@dbgap@:reads/SRP011999/SRS602236/SRX547671/SRR1790992/SRR1790992.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_1_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293047	@dbgap@:reads/SRP011999/SRS602236/SRX547671/SRR1293047/SRR1293047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANCVR-04A-02R.exon.quantification.txt	3			
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANCVR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANCVR-04A-02R	RNA	EFO	SRS602236	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANCVR-04A-02R A33586 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33586	SRX547671	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANCVR-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANCVR-04A-02R A33586 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2185-1./A33586.fastq	SRR1790992	@dbgap@:reads/SRP011999/SRS602236/SRX547671/SRR1790992/SRR1790992.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_1_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293047	@dbgap@:reads/SRP011999/SRS602236/SRX547671/SRR1293047/SRR1293047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANCVR-04A-02R.gene.quantification.txt	3			
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANCVR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANCVR-04A-02R	RNA	EFO	SRS602236	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANCVR-04A-02R A33586 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33586	SRX547671	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANCVR-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANCVR-04A-02R A33586 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2185-1./A33586.fastq	SRR1790992	@dbgap@:reads/SRP011999/SRS602236/SRX547671/SRR1790992/SRR1790992.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_1_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293047	@dbgap@:reads/SRP011999/SRS602236/SRX547671/SRR1293047/SRR1293047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANCVR-04A-02R.isoform.quantification.txt	3			
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANCVR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANCVR-04A-02R	RNA	EFO	SRS602236	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANCVR-04A-02R A33586 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33586	SRX547671	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANCVR-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANCVR-04A-02R A33586 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2185-1./A33586.fastq	SRR1790992	@dbgap@:reads/SRP011999/SRS602236/SRX547671/SRR1790992/SRR1790992.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_1_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293047	@dbgap@:reads/SRP011999/SRS602236/SRX547671/SRR1293047/SRR1293047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANCVR-04A-02R.fusion.vcf	3			
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANCVR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANCVR-04A-02R	RNA	EFO	SRS602236	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANCVR-04A-02R A33586 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33586	SRX547671	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANCVR-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANCVR-04A-02R A33586 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2185-1./A33586.fastq	SRR1790992	@dbgap@:reads/SRP011999/SRS602236/SRX547671/SRR1790992/SRR1790992.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_1_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293047	@dbgap@:reads/SRP011999/SRS602236/SRX547671/SRR1293047/SRR1293047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANCVR-04A-02R.indel.vcf	3			
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANCVR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANCVR-04A-02R	RNA	EFO	SRS602236	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANCVR-04A-02R A33586 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33586	SRX547671	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANCVR-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANCVR-04A-02R A33586 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2185-1./A33586.fastq	SRR1790992	@dbgap@:reads/SRP011999/SRS602236/SRX547671/SRR1790992/SRR1790992.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_1_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293047	@dbgap@:reads/SRP011999/SRS602236/SRX547671/SRR1293047/SRR1293047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANCVR-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDWE-03A-02R	RNA	EFO	SRS602226	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDWE-03A-02R A33582 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33582	SRX547686	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANDWE-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PANDWE-03A-02R A33582 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2194-1./A33582.fastq	SRR1791110	@dbgap@:reads/SRP011999/SRS602226/SRX547686/SRR1791110/SRR1791110.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_2_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293030	@dbgap@:reads/SRP011999/SRS602226/SRX547686/SRR1293030/SRR1293030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANDWE-03A-02R.exon.quantification.txt	3			
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDWE-03A-02R	RNA	EFO	SRS602226	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDWE-03A-02R A33582 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33582	SRX547686	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANDWE-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PANDWE-03A-02R A33582 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2194-1./A33582.fastq	SRR1791110	@dbgap@:reads/SRP011999/SRS602226/SRX547686/SRR1791110/SRR1791110.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_2_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293030	@dbgap@:reads/SRP011999/SRS602226/SRX547686/SRR1293030/SRR1293030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANDWE-03A-02R.gene.quantification.txt	3			
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDWE-03A-02R	RNA	EFO	SRS602226	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDWE-03A-02R A33582 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33582	SRX547686	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANDWE-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PANDWE-03A-02R A33582 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2194-1./A33582.fastq	SRR1791110	@dbgap@:reads/SRP011999/SRS602226/SRX547686/SRR1791110/SRR1791110.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_2_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293030	@dbgap@:reads/SRP011999/SRS602226/SRX547686/SRR1293030/SRR1293030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANDWE-03A-02R.isoform.quantification.txt	3			
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDWE-03A-02R	RNA	EFO	SRS602226	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDWE-03A-02R A33582 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33582	SRX547686	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANDWE-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PANDWE-03A-02R A33582 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2194-1./A33582.fastq	SRR1791110	@dbgap@:reads/SRP011999/SRS602226/SRX547686/SRR1791110/SRR1791110.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_2_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293030	@dbgap@:reads/SRP011999/SRS602226/SRX547686/SRR1293030/SRR1293030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANDWE-03A-02R.fusion.vcf	3			
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDWE-03A-02R	RNA	EFO	SRS602226	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDWE-03A-02R A33582 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33582	SRX547686	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANDWE-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PANDWE-03A-02R A33582 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2194-1./A33582.fastq	SRR1791110	@dbgap@:reads/SRP011999/SRS602226/SRX547686/SRR1791110/SRR1791110.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_2_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293030	@dbgap@:reads/SRP011999/SRS602226/SRX547686/SRR1293030/SRR1293030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANDWE-03A-02R.indel.vcf	3			
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDWE-03A-02R	RNA	EFO	SRS602226	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDWE-03A-02R A33582 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33582	SRX547686	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANDWE-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PANDWE-03A-02R A33582 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2194-1./A33582.fastq	SRR1791110	@dbgap@:reads/SRP011999/SRS602226/SRX547686/SRR1791110/SRR1791110.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_2_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293030	@dbgap@:reads/SRP011999/SRS602226/SRX547686/SRR1293030/SRR1293030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANDWE-03A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANEUH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANEUH-09A-01R	RNA	EFO	SRS602189	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANEUH-09A-01R A32708 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32708	SRX547593	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANEUH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANEUH-09A-01R A32708 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2270-1./A32708.fastq	SRR1791067	@dbgap@:reads/SRP011999/SRS602189/SRX547593/SRR1791067/SRR1791067.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_5_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292969	@dbgap@:reads/SRP011999/SRS602189/SRX547593/SRR1292969/SRR1292969.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANEUH-09A-01R.exon.quantification.txt	3			
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANEUH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANEUH-09A-01R	RNA	EFO	SRS602189	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANEUH-09A-01R A32708 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32708	SRX547593	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANEUH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANEUH-09A-01R A32708 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2270-1./A32708.fastq	SRR1791067	@dbgap@:reads/SRP011999/SRS602189/SRX547593/SRR1791067/SRR1791067.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_5_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292969	@dbgap@:reads/SRP011999/SRS602189/SRX547593/SRR1292969/SRR1292969.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANEUH-09A-01R.gene.quantification.txt	3			
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANEUH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANEUH-09A-01R	RNA	EFO	SRS602189	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANEUH-09A-01R A32708 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32708	SRX547593	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANEUH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANEUH-09A-01R A32708 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2270-1./A32708.fastq	SRR1791067	@dbgap@:reads/SRP011999/SRS602189/SRX547593/SRR1791067/SRR1791067.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_5_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292969	@dbgap@:reads/SRP011999/SRS602189/SRX547593/SRR1292969/SRR1292969.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANEUH-09A-01R.isoform.quantification.txt	3			
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANEUH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANEUH-09A-01R	RNA	EFO	SRS602189	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANEUH-09A-01R A32708 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32708	SRX547593	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANEUH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANEUH-09A-01R A32708 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2270-1./A32708.fastq	SRR1791067	@dbgap@:reads/SRP011999/SRS602189/SRX547593/SRR1791067/SRR1791067.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_5_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292969	@dbgap@:reads/SRP011999/SRS602189/SRX547593/SRR1292969/SRR1292969.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANEUH-09A-01R.fusion.vcf	3			
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANEUH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANEUH-09A-01R	RNA	EFO	SRS602189	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANEUH-09A-01R A32708 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32708	SRX547593	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANEUH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANEUH-09A-01R A32708 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2270-1./A32708.fastq	SRR1791067	@dbgap@:reads/SRP011999/SRS602189/SRX547593/SRR1791067/SRR1791067.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_5_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292969	@dbgap@:reads/SRP011999/SRS602189/SRX547593/SRR1292969/SRR1292969.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANEUH-09A-01R.indel.vcf	3			
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANEUH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANEUH-09A-01R	RNA	EFO	SRS602189	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANEUH-09A-01R A32708 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32708	SRX547593	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANEUH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANEUH-09A-01R A32708 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2270-1./A32708.fastq	SRR1791067	@dbgap@:reads/SRP011999/SRS602189/SRX547593/SRR1791067/SRR1791067.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_5_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292969	@dbgap@:reads/SRP011999/SRS602189/SRX547593/SRR1292969/SRR1292969.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANEUH-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANFNZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANFNZ-03A-01R	RNA	EFO	SRS602173	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANFNZ-03A-01R A32711 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32711	SRX547582	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANFNZ-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANFNZ-03A-01R A32711 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2284-1./A32711.fastq	SRR1791037	@dbgap@:reads/SRP011999/SRS602173/SRX547582/SRR1791037/SRR1791037.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_3_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292968	@dbgap@:reads/SRP011999/SRS602173/SRX547582/SRR1292968/SRR1292968.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANFNZ-03A-01R.exon.quantification.txt	3			
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANFNZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANFNZ-03A-01R	RNA	EFO	SRS602173	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANFNZ-03A-01R A32711 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32711	SRX547582	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANFNZ-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANFNZ-03A-01R A32711 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2284-1./A32711.fastq	SRR1791037	@dbgap@:reads/SRP011999/SRS602173/SRX547582/SRR1791037/SRR1791037.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_3_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292968	@dbgap@:reads/SRP011999/SRS602173/SRX547582/SRR1292968/SRR1292968.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANFNZ-03A-01R.gene.quantification.txt	3			
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANFNZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANFNZ-03A-01R	RNA	EFO	SRS602173	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANFNZ-03A-01R A32711 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32711	SRX547582	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANFNZ-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANFNZ-03A-01R A32711 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2284-1./A32711.fastq	SRR1791037	@dbgap@:reads/SRP011999/SRS602173/SRX547582/SRR1791037/SRR1791037.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_3_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292968	@dbgap@:reads/SRP011999/SRS602173/SRX547582/SRR1292968/SRR1292968.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANFNZ-03A-01R.isoform.quantification.txt	3			
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANFNZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANFNZ-03A-01R	RNA	EFO	SRS602173	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANFNZ-03A-01R A32711 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32711	SRX547582	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANFNZ-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANFNZ-03A-01R A32711 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2284-1./A32711.fastq	SRR1791037	@dbgap@:reads/SRP011999/SRS602173/SRX547582/SRR1791037/SRR1791037.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_3_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292968	@dbgap@:reads/SRP011999/SRS602173/SRX547582/SRR1292968/SRR1292968.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANFNZ-03A-01R.fusion.vcf	3			
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANFNZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANFNZ-03A-01R	RNA	EFO	SRS602173	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANFNZ-03A-01R A32711 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32711	SRX547582	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANFNZ-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANFNZ-03A-01R A32711 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2284-1./A32711.fastq	SRR1791037	@dbgap@:reads/SRP011999/SRS602173/SRX547582/SRR1791037/SRR1791037.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_3_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292968	@dbgap@:reads/SRP011999/SRS602173/SRX547582/SRR1292968/SRR1292968.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANFNZ-03A-01R.indel.vcf	3			
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANFNZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANFNZ-03A-01R	RNA	EFO	SRS602173	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANFNZ-03A-01R A32711 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32711	SRX547582	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANFNZ-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANFNZ-03A-01R A32711 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2284-1./A32711.fastq	SRR1791037	@dbgap@:reads/SRP011999/SRS602173/SRX547582/SRR1791037/SRR1791037.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_3_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292968	@dbgap@:reads/SRP011999/SRS602173/SRX547582/SRR1292968/SRR1292968.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANFNZ-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANGIF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANGIF-03A-01R	RNA	EFO	SRS602136	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANGIF-03A-01R A32712 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32712	SRX547625	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANGIF-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANGIF-03A-01R A32712 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2271-1./A32712.fastq	SRR1791115	@dbgap@:reads/SRP011999/SRS602136/SRX547625/SRR1791115/SRR1791115.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_6_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292981	@dbgap@:reads/SRP011999/SRS602136/SRX547625/SRR1292981/SRR1292981.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANGIF-03A-01R.exon.quantification.txt	3			
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANGIF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANGIF-03A-01R	RNA	EFO	SRS602136	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANGIF-03A-01R A32712 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32712	SRX547625	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANGIF-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANGIF-03A-01R A32712 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2271-1./A32712.fastq	SRR1791115	@dbgap@:reads/SRP011999/SRS602136/SRX547625/SRR1791115/SRR1791115.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_6_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292981	@dbgap@:reads/SRP011999/SRS602136/SRX547625/SRR1292981/SRR1292981.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANGIF-03A-01R.gene.quantification.txt	3			
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANGIF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANGIF-03A-01R	RNA	EFO	SRS602136	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANGIF-03A-01R A32712 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32712	SRX547625	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANGIF-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANGIF-03A-01R A32712 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2271-1./A32712.fastq	SRR1791115	@dbgap@:reads/SRP011999/SRS602136/SRX547625/SRR1791115/SRR1791115.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_6_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292981	@dbgap@:reads/SRP011999/SRS602136/SRX547625/SRR1292981/SRR1292981.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANGIF-03A-01R.isoform.quantification.txt	3			
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANGIF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANGIF-03A-01R	RNA	EFO	SRS602136	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANGIF-03A-01R A32712 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32712	SRX547625	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANGIF-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANGIF-03A-01R A32712 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2271-1./A32712.fastq	SRR1791115	@dbgap@:reads/SRP011999/SRS602136/SRX547625/SRR1791115/SRR1791115.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_6_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292981	@dbgap@:reads/SRP011999/SRS602136/SRX547625/SRR1292981/SRR1292981.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANGIF-03A-01R.fusion.vcf	3			
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANGIF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANGIF-03A-01R	RNA	EFO	SRS602136	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANGIF-03A-01R A32712 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32712	SRX547625	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANGIF-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANGIF-03A-01R A32712 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2271-1./A32712.fastq	SRR1791115	@dbgap@:reads/SRP011999/SRS602136/SRX547625/SRR1791115/SRR1791115.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_6_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292981	@dbgap@:reads/SRP011999/SRS602136/SRX547625/SRR1292981/SRR1292981.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANGIF-03A-01R.indel.vcf	3			
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANGIF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANGIF-03A-01R	RNA	EFO	SRS602136	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANGIF-03A-01R A32712 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32712	SRX547625	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANGIF-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANGIF-03A-01R A32712 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2271-1./A32712.fastq	SRR1791115	@dbgap@:reads/SRP011999/SRS602136/SRX547625/SRR1791115/SRR1791115.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_6_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292981	@dbgap@:reads/SRP011999/SRS602136/SRX547625/SRR1292981/SRR1292981.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANGIF-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANIEU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANIEU-03A-01R	RNA	EFO	SRS602129	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANIEU-03A-01R A32709 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32709	SRX547620	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANIEU-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANIEU-03A-01R A32709 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2285-1./A32709.fastq	SRR1791041	@dbgap@:reads/SRP011999/SRS602129/SRX547620/SRR1791041/SRR1791041.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_4_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292953	@dbgap@:reads/SRP011999/SRS602129/SRX547620/SRR1292953/SRR1292953.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANIEU-03A-01R.exon.quantification.txt	3			
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANIEU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANIEU-03A-01R	RNA	EFO	SRS602129	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANIEU-03A-01R A32709 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32709	SRX547620	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANIEU-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANIEU-03A-01R A32709 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2285-1./A32709.fastq	SRR1791041	@dbgap@:reads/SRP011999/SRS602129/SRX547620/SRR1791041/SRR1791041.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_4_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292953	@dbgap@:reads/SRP011999/SRS602129/SRX547620/SRR1292953/SRR1292953.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANIEU-03A-01R.gene.quantification.txt	3			
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANIEU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANIEU-03A-01R	RNA	EFO	SRS602129	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANIEU-03A-01R A32709 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32709	SRX547620	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANIEU-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANIEU-03A-01R A32709 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2285-1./A32709.fastq	SRR1791041	@dbgap@:reads/SRP011999/SRS602129/SRX547620/SRR1791041/SRR1791041.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_4_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292953	@dbgap@:reads/SRP011999/SRS602129/SRX547620/SRR1292953/SRR1292953.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANIEU-03A-01R.isoform.quantification.txt	3			
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANIEU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANIEU-03A-01R	RNA	EFO	SRS602129	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANIEU-03A-01R A32709 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32709	SRX547620	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANIEU-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANIEU-03A-01R A32709 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2285-1./A32709.fastq	SRR1791041	@dbgap@:reads/SRP011999/SRS602129/SRX547620/SRR1791041/SRR1791041.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_4_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292953	@dbgap@:reads/SRP011999/SRS602129/SRX547620/SRR1292953/SRR1292953.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANIEU-03A-01R.fusion.vcf	3			
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANIEU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANIEU-03A-01R	RNA	EFO	SRS602129	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANIEU-03A-01R A32709 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32709	SRX547620	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANIEU-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANIEU-03A-01R A32709 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2285-1./A32709.fastq	SRR1791041	@dbgap@:reads/SRP011999/SRS602129/SRX547620/SRR1791041/SRR1791041.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_4_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292953	@dbgap@:reads/SRP011999/SRS602129/SRX547620/SRR1292953/SRR1292953.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANIEU-03A-01R.indel.vcf	3			
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANIEU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANIEU-03A-01R	RNA	EFO	SRS602129	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANIEU-03A-01R A32709 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32709	SRX547620	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANIEU-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANIEU-03A-01R A32709 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2285-1./A32709.fastq	SRR1791041	@dbgap@:reads/SRP011999/SRS602129/SRX547620/SRR1791041/SRR1791041.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_4_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292953	@dbgap@:reads/SRP011999/SRS602129/SRX547620/SRR1292953/SRR1292953.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANIEU-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANJPG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANJPG-09A-01R	RNA	EFO	SRS602130	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANJPG-09A-01R A32691 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32691	SRX543404	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANJPG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANJPG-09A-01R A32691 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2228-1./A32691.fastq	SRR1791065	@dbgap@:reads/SRP011999/SRS602130/SRX543404/SRR1791065/SRR1791065.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_1_CGGAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288050	@dbgap@:reads/SRP011999/SRS602130/SRX543404/SRR1288050/SRR1288050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANJPG-09A-01R.exon.quantification.txt	3			
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANJPG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANJPG-09A-01R	RNA	EFO	SRS602130	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANJPG-09A-01R A32691 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32691	SRX543404	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANJPG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANJPG-09A-01R A32691 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2228-1./A32691.fastq	SRR1791065	@dbgap@:reads/SRP011999/SRS602130/SRX543404/SRR1791065/SRR1791065.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_1_CGGAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288050	@dbgap@:reads/SRP011999/SRS602130/SRX543404/SRR1288050/SRR1288050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANJPG-09A-01R.gene.quantification.txt	3			
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANJPG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANJPG-09A-01R	RNA	EFO	SRS602130	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANJPG-09A-01R A32691 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32691	SRX543404	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANJPG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANJPG-09A-01R A32691 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2228-1./A32691.fastq	SRR1791065	@dbgap@:reads/SRP011999/SRS602130/SRX543404/SRR1791065/SRR1791065.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_1_CGGAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288050	@dbgap@:reads/SRP011999/SRS602130/SRX543404/SRR1288050/SRR1288050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANJPG-09A-01R.isoform.quantification.txt	3			
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANJPG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANJPG-09A-01R	RNA	EFO	SRS602130	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANJPG-09A-01R A32691 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32691	SRX543404	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANJPG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANJPG-09A-01R A32691 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2228-1./A32691.fastq	SRR1791065	@dbgap@:reads/SRP011999/SRS602130/SRX543404/SRR1791065/SRR1791065.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_1_CGGAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288050	@dbgap@:reads/SRP011999/SRS602130/SRX543404/SRR1288050/SRR1288050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANJPG-09A-01R.fusion.vcf	3			
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANJPG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANJPG-09A-01R	RNA	EFO	SRS602130	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANJPG-09A-01R A32691 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32691	SRX543404	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANJPG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANJPG-09A-01R A32691 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2228-1./A32691.fastq	SRR1791065	@dbgap@:reads/SRP011999/SRS602130/SRX543404/SRR1791065/SRR1791065.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_1_CGGAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288050	@dbgap@:reads/SRP011999/SRS602130/SRX543404/SRR1288050/SRR1288050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANJPG-09A-01R.indel.vcf	3			
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANJPG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANJPG-09A-01R	RNA	EFO	SRS602130	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANJPG-09A-01R A32691 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32691	SRX543404	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANJPG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANJPG-09A-01R A32691 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2228-1./A32691.fastq	SRR1791065	@dbgap@:reads/SRP011999/SRS602130/SRX543404/SRR1791065/SRR1791065.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_1_CGGAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288050	@dbgap@:reads/SRP011999/SRS602130/SRX543404/SRR1288050/SRR1288050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANJPG-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANJWJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANJWJ-09A-01R	RNA	EFO	SRS602170	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANJWJ-09A-01R A32710 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32710	SRX547590	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANJWJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANJWJ-09A-01R A32710 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2279-1./A32710.fastq	SRR1791049	@dbgap@:reads/SRP011999/SRS602170/SRX547590/SRR1791049/SRR1791049.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_6_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292996	@dbgap@:reads/SRP011999/SRS602170/SRX547590/SRR1292996/SRR1292996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANJWJ-09A-01R.exon.quantification.txt	3			
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANJWJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANJWJ-09A-01R	RNA	EFO	SRS602170	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANJWJ-09A-01R A32710 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32710	SRX547590	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANJWJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANJWJ-09A-01R A32710 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2279-1./A32710.fastq	SRR1791049	@dbgap@:reads/SRP011999/SRS602170/SRX547590/SRR1791049/SRR1791049.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_6_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292996	@dbgap@:reads/SRP011999/SRS602170/SRX547590/SRR1292996/SRR1292996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANJWJ-09A-01R.gene.quantification.txt	3			
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANJWJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANJWJ-09A-01R	RNA	EFO	SRS602170	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANJWJ-09A-01R A32710 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32710	SRX547590	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANJWJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANJWJ-09A-01R A32710 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2279-1./A32710.fastq	SRR1791049	@dbgap@:reads/SRP011999/SRS602170/SRX547590/SRR1791049/SRR1791049.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_6_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292996	@dbgap@:reads/SRP011999/SRS602170/SRX547590/SRR1292996/SRR1292996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANJWJ-09A-01R.isoform.quantification.txt	3			
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANJWJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANJWJ-09A-01R	RNA	EFO	SRS602170	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANJWJ-09A-01R A32710 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32710	SRX547590	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANJWJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANJWJ-09A-01R A32710 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2279-1./A32710.fastq	SRR1791049	@dbgap@:reads/SRP011999/SRS602170/SRX547590/SRR1791049/SRR1791049.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_6_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292996	@dbgap@:reads/SRP011999/SRS602170/SRX547590/SRR1292996/SRR1292996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANJWJ-09A-01R.fusion.vcf	3			
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANJWJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANJWJ-09A-01R	RNA	EFO	SRS602170	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANJWJ-09A-01R A32710 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32710	SRX547590	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANJWJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANJWJ-09A-01R A32710 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2279-1./A32710.fastq	SRR1791049	@dbgap@:reads/SRP011999/SRS602170/SRX547590/SRR1791049/SRR1791049.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_6_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292996	@dbgap@:reads/SRP011999/SRS602170/SRX547590/SRR1292996/SRR1292996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANJWJ-09A-01R.indel.vcf	3			
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANJWJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANJWJ-09A-01R	RNA	EFO	SRS602170	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANJWJ-09A-01R A32710 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32710	SRX547590	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANJWJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANJWJ-09A-01R A32710 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2279-1./A32710.fastq	SRR1791049	@dbgap@:reads/SRP011999/SRS602170/SRX547590/SRR1791049/SRR1791049.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_6_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292996	@dbgap@:reads/SRP011999/SRS602170/SRX547590/SRR1292996/SRR1292996.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANJWJ-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-04A-02R	RNA	EFO	SRS602223	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-04A-02R A33580 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33580	SRX547687	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKAK-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANKAK-04A-02R A33580 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2189-1./A33580.fastq	SRR1790994	@dbgap@:reads/SRP011999/SRS602223/SRX547687/SRR1790994/SRR1790994.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_5_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293051	@dbgap@:reads/SRP011999/SRS602223/SRX547687/SRR1293051/SRR1293051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANKAK-04A-02R.exon.quantification.txt	3			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-04A-02R	RNA	EFO	SRS602223	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-04A-02R A33580 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33580	SRX547687	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKAK-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANKAK-04A-02R A33580 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2189-1./A33580.fastq	SRR1790994	@dbgap@:reads/SRP011999/SRS602223/SRX547687/SRR1790994/SRR1790994.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_5_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293051	@dbgap@:reads/SRP011999/SRS602223/SRX547687/SRR1293051/SRR1293051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANKAK-04A-02R.gene.quantification.txt	3			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-04A-02R	RNA	EFO	SRS602223	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-04A-02R A33580 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33580	SRX547687	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKAK-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANKAK-04A-02R A33580 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2189-1./A33580.fastq	SRR1790994	@dbgap@:reads/SRP011999/SRS602223/SRX547687/SRR1790994/SRR1790994.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_5_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293051	@dbgap@:reads/SRP011999/SRS602223/SRX547687/SRR1293051/SRR1293051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANKAK-04A-02R.isoform.quantification.txt	3			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-04A-02R	RNA	EFO	SRS602223	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-04A-02R A33580 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33580	SRX547687	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKAK-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANKAK-04A-02R A33580 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2189-1./A33580.fastq	SRR1790994	@dbgap@:reads/SRP011999/SRS602223/SRX547687/SRR1790994/SRR1790994.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_5_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293051	@dbgap@:reads/SRP011999/SRS602223/SRX547687/SRR1293051/SRR1293051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANKAK-04A-02R.fusion.vcf	3			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-04A-02R	RNA	EFO	SRS602223	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-04A-02R A33580 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33580	SRX547687	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKAK-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANKAK-04A-02R A33580 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2189-1./A33580.fastq	SRR1790994	@dbgap@:reads/SRP011999/SRS602223/SRX547687/SRR1790994/SRR1790994.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_5_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293051	@dbgap@:reads/SRP011999/SRS602223/SRX547687/SRR1293051/SRR1293051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANKAK-04A-02R.indel.vcf	3			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-04A-02R	RNA	EFO	SRS602223	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-04A-02R A33580 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33580	SRX547687	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKAK-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANKAK-04A-02R A33580 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2189-1./A33580.fastq	SRR1790994	@dbgap@:reads/SRP011999/SRS602223/SRX547687/SRR1790994/SRR1790994.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_5_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293051	@dbgap@:reads/SRP011999/SRS602223/SRX547687/SRR1293051/SRR1293051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANKAK-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-01R	RNA	EFO	SRS602095	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-01R A32652 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32652	SRX543423	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKAK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PANKAK-09A-01R A32652 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2227-1./A32652.fastq	SRR1791096	@dbgap@:reads/SRP011999/SRS602095/SRX543423/SRR1791096/SRR1791096.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_8_TGGCGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288074	@dbgap@:reads/SRP011999/SRS602095/SRX543423/SRR1288074/SRR1288074.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANKAK-09A-01R.exon.quantification.txt	3			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-01R	RNA	EFO	SRS602095	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-01R A32652 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32652	SRX543423	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKAK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PANKAK-09A-01R A32652 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2227-1./A32652.fastq	SRR1791096	@dbgap@:reads/SRP011999/SRS602095/SRX543423/SRR1791096/SRR1791096.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_8_TGGCGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288074	@dbgap@:reads/SRP011999/SRS602095/SRX543423/SRR1288074/SRR1288074.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANKAK-09A-01R.gene.quantification.txt	3			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-01R	RNA	EFO	SRS602095	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-01R A32652 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32652	SRX543423	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKAK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PANKAK-09A-01R A32652 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2227-1./A32652.fastq	SRR1791096	@dbgap@:reads/SRP011999/SRS602095/SRX543423/SRR1791096/SRR1791096.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_8_TGGCGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288074	@dbgap@:reads/SRP011999/SRS602095/SRX543423/SRR1288074/SRR1288074.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANKAK-09A-01R.isoform.quantification.txt	3			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-01R	RNA	EFO	SRS602095	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-01R A32652 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32652	SRX543423	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKAK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PANKAK-09A-01R A32652 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2227-1./A32652.fastq	SRR1791096	@dbgap@:reads/SRP011999/SRS602095/SRX543423/SRR1791096/SRR1791096.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_8_TGGCGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288074	@dbgap@:reads/SRP011999/SRS602095/SRX543423/SRR1288074/SRR1288074.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANKAK-09A-01R.fusion.vcf	3			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-01R	RNA	EFO	SRS602095	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-01R A32652 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32652	SRX543423	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKAK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PANKAK-09A-01R A32652 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2227-1./A32652.fastq	SRR1791096	@dbgap@:reads/SRP011999/SRS602095/SRX543423/SRR1791096/SRR1791096.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_8_TGGCGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288074	@dbgap@:reads/SRP011999/SRS602095/SRX543423/SRR1288074/SRR1288074.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANKAK-09A-01R.indel.vcf	3			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-01R	RNA	EFO	SRS602095	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-01R A32652 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32652	SRX543423	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKAK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PANKAK-09A-01R A32652 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2227-1./A32652.fastq	SRR1791096	@dbgap@:reads/SRP011999/SRS602095/SRX543423/SRR1791096/SRR1791096.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_8_TGGCGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288074	@dbgap@:reads/SRP011999/SRS602095/SRX543423/SRR1288074/SRR1288074.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANKAK-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-02R	RNA	EFO	SRS2416200	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-02R A61061 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61061	SRX3073868	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKAK-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANKAK-09A-02R A61061 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4505-1./A61061.fastq	SRR5912875	@dbgap@:reads/SRP011999/SRS2416200/SRX3073868/SRR5912875/SRR5912875.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANKAK-09A-02R.exon.quantification.txt	3			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-02R	RNA	EFO	SRS2416200	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-02R A61061 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61061	SRX3073868	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKAK-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANKAK-09A-02R A61061 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4505-1./A61061.fastq	SRR5912875	@dbgap@:reads/SRP011999/SRS2416200/SRX3073868/SRR5912875/SRR5912875.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANKAK-09A-02R.gene.quantification.txt	3			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-02R	RNA	EFO	SRS2416200	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-02R A61061 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61061	SRX3073868	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKAK-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANKAK-09A-02R A61061 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4505-1./A61061.fastq	SRR5912875	@dbgap@:reads/SRP011999/SRS2416200/SRX3073868/SRR5912875/SRR5912875.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANKAK-09A-02R.isoform.quantification.txt	3			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-02R	RNA	EFO	SRS2416200	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-02R A61061 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61061	SRX3073868	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKAK-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANKAK-09A-02R A61061 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4505-1./A61061.fastq	SRR5912875	@dbgap@:reads/SRP011999/SRS2416200/SRX3073868/SRR5912875/SRR5912875.sra	1								bcgsc.ca:Protocol:mRNAseq-Fusion-DeFuse:01		TARGET-10-PANKAK-09A-02R.results.filtered.tsv	3			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-02R	RNA	EFO	SRS2416200	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-02R A61061 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61061	SRX3073868	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKAK-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANKAK-09A-02R A61061 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4505-1./A61061.fastq	SRR5912875	@dbgap@:reads/SRP011999/SRS2416200/SRX3073868/SRR5912875/SRR5912875.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANKAK-09A-02R.fusion.vcf	3			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-02R	RNA	EFO	SRS2416200	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-02R A61061 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61061	SRX3073868	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKAK-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANKAK-09A-02R A61061 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4505-1./A61061.fastq	SRR5912875	@dbgap@:reads/SRP011999/SRS2416200/SRX3073868/SRR5912875/SRR5912875.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANKAK-09A-02R.indel.vcf	3			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-02R	RNA	EFO	SRS2416200	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKAK-09A-02R A61061 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61061	SRX3073868	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKAK-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANKAK-09A-02R A61061 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4505-1./A61061.fastq	SRR5912875	@dbgap@:reads/SRP011999/SRS2416200/SRX3073868/SRR5912875/SRR5912875.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-10-PANKAK-09A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Tab:01	TARGET-10-PANKAK-09A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKDT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKDT-03A-01R	RNA	EFO	SRS602112	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKDT-03A-01R A32692 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32692	SRX543413	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKDT-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANKDT-03A-01R A32692 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2231-1./A32692.fastq	SRR1791114	@dbgap@:reads/SRP011999/SRS602112/SRX543413/SRR1791114/SRR1791114.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_4_GATATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288006	@dbgap@:reads/SRP011999/SRS602112/SRX543413/SRR1288006/SRR1288006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANKDT-03A-01R.exon.quantification.txt	3			
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKDT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKDT-03A-01R	RNA	EFO	SRS602112	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKDT-03A-01R A32692 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32692	SRX543413	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKDT-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANKDT-03A-01R A32692 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2231-1./A32692.fastq	SRR1791114	@dbgap@:reads/SRP011999/SRS602112/SRX543413/SRR1791114/SRR1791114.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_4_GATATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288006	@dbgap@:reads/SRP011999/SRS602112/SRX543413/SRR1288006/SRR1288006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANKDT-03A-01R.gene.quantification.txt	3			
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKDT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKDT-03A-01R	RNA	EFO	SRS602112	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKDT-03A-01R A32692 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32692	SRX543413	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKDT-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANKDT-03A-01R A32692 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2231-1./A32692.fastq	SRR1791114	@dbgap@:reads/SRP011999/SRS602112/SRX543413/SRR1791114/SRR1791114.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_4_GATATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288006	@dbgap@:reads/SRP011999/SRS602112/SRX543413/SRR1288006/SRR1288006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANKDT-03A-01R.isoform.quantification.txt	3			
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKDT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKDT-03A-01R	RNA	EFO	SRS602112	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKDT-03A-01R A32692 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32692	SRX543413	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKDT-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANKDT-03A-01R A32692 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2231-1./A32692.fastq	SRR1791114	@dbgap@:reads/SRP011999/SRS602112/SRX543413/SRR1791114/SRR1791114.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_4_GATATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288006	@dbgap@:reads/SRP011999/SRS602112/SRX543413/SRR1288006/SRR1288006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANKDT-03A-01R.fusion.vcf	3			
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKDT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKDT-03A-01R	RNA	EFO	SRS602112	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKDT-03A-01R A32692 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32692	SRX543413	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKDT-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANKDT-03A-01R A32692 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2231-1./A32692.fastq	SRR1791114	@dbgap@:reads/SRP011999/SRS602112/SRX543413/SRR1791114/SRR1791114.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_4_GATATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288006	@dbgap@:reads/SRP011999/SRS602112/SRX543413/SRR1288006/SRR1288006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANKDT-03A-01R.indel.vcf	3			
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKDT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKDT-03A-01R	RNA	EFO	SRS602112	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKDT-03A-01R A32692 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32692	SRX543413	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKDT-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANKDT-03A-01R A32692 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2231-1./A32692.fastq	SRR1791114	@dbgap@:reads/SRP011999/SRS602112/SRX543413/SRR1791114/SRR1791114.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_4_GATATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288006	@dbgap@:reads/SRP011999/SRS602112/SRX543413/SRR1288006/SRR1288006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANKDT-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKGK-09A-01R	RNA	EFO	SRS602147	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKGK-09A-01R A32693 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32693	SRX543447	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKGK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PANKGK-09A-01R A32693 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2224-1./A32693.fastq	SRR1791052	@dbgap@:reads/SRP011999/SRS602147/SRX543447/SRR1791052/SRR1791052.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_5_GGCCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288059	@dbgap@:reads/SRP011999/SRS602147/SRX543447/SRR1288059/SRR1288059.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANKGK-09A-01R.exon.quantification.txt	3			
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKGK-09A-01R	RNA	EFO	SRS602147	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKGK-09A-01R A32693 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32693	SRX543447	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKGK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PANKGK-09A-01R A32693 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2224-1./A32693.fastq	SRR1791052	@dbgap@:reads/SRP011999/SRS602147/SRX543447/SRR1791052/SRR1791052.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_5_GGCCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288059	@dbgap@:reads/SRP011999/SRS602147/SRX543447/SRR1288059/SRR1288059.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANKGK-09A-01R.gene.quantification.txt	3			
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKGK-09A-01R	RNA	EFO	SRS602147	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKGK-09A-01R A32693 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32693	SRX543447	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKGK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PANKGK-09A-01R A32693 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2224-1./A32693.fastq	SRR1791052	@dbgap@:reads/SRP011999/SRS602147/SRX543447/SRR1791052/SRR1791052.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_5_GGCCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288059	@dbgap@:reads/SRP011999/SRS602147/SRX543447/SRR1288059/SRR1288059.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANKGK-09A-01R.isoform.quantification.txt	3			
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKGK-09A-01R	RNA	EFO	SRS602147	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKGK-09A-01R A32693 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32693	SRX543447	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKGK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PANKGK-09A-01R A32693 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2224-1./A32693.fastq	SRR1791052	@dbgap@:reads/SRP011999/SRS602147/SRX543447/SRR1791052/SRR1791052.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_5_GGCCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288059	@dbgap@:reads/SRP011999/SRS602147/SRX543447/SRR1288059/SRR1288059.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANKGK-09A-01R.fusion.vcf	3			
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKGK-09A-01R	RNA	EFO	SRS602147	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKGK-09A-01R A32693 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32693	SRX543447	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKGK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PANKGK-09A-01R A32693 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2224-1./A32693.fastq	SRR1791052	@dbgap@:reads/SRP011999/SRS602147/SRX543447/SRR1791052/SRR1791052.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_5_GGCCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288059	@dbgap@:reads/SRP011999/SRS602147/SRX543447/SRR1288059/SRR1288059.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANKGK-09A-01R.indel.vcf	3			
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKGK-09A-01R	RNA	EFO	SRS602147	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKGK-09A-01R A32693 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32693	SRX543447	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKGK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PANKGK-09A-01R A32693 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2224-1./A32693.fastq	SRR1791052	@dbgap@:reads/SRP011999/SRS602147/SRX543447/SRR1791052/SRR1791052.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_5_GGCCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288059	@dbgap@:reads/SRP011999/SRS602147/SRX543447/SRR1288059/SRR1288059.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANKGK-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKMB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKMB-09A-02R	RNA	EFO	SRS602212	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKMB-09A-02R A33581 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33581	SRX547678	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKMB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANKMB-09A-02R A33581 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2182-1./A33581.fastq	SRR1791087	@dbgap@:reads/SRP011999/SRS602212/SRX547678/SRR1791087/SRR1791087.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_6_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293042	@dbgap@:reads/SRP011999/SRS602212/SRX547678/SRR1293042/SRR1293042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANKMB-09A-02R.exon.quantification.txt	3			
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKMB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKMB-09A-02R	RNA	EFO	SRS602212	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKMB-09A-02R A33581 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33581	SRX547678	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKMB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANKMB-09A-02R A33581 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2182-1./A33581.fastq	SRR1791087	@dbgap@:reads/SRP011999/SRS602212/SRX547678/SRR1791087/SRR1791087.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_6_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293042	@dbgap@:reads/SRP011999/SRS602212/SRX547678/SRR1293042/SRR1293042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANKMB-09A-02R.gene.quantification.txt	3			
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKMB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKMB-09A-02R	RNA	EFO	SRS602212	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKMB-09A-02R A33581 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33581	SRX547678	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKMB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANKMB-09A-02R A33581 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2182-1./A33581.fastq	SRR1791087	@dbgap@:reads/SRP011999/SRS602212/SRX547678/SRR1791087/SRR1791087.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_6_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293042	@dbgap@:reads/SRP011999/SRS602212/SRX547678/SRR1293042/SRR1293042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANKMB-09A-02R.isoform.quantification.txt	3			
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKMB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKMB-09A-02R	RNA	EFO	SRS602212	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKMB-09A-02R A33581 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33581	SRX547678	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKMB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANKMB-09A-02R A33581 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2182-1./A33581.fastq	SRR1791087	@dbgap@:reads/SRP011999/SRS602212/SRX547678/SRR1791087/SRR1791087.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_6_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293042	@dbgap@:reads/SRP011999/SRS602212/SRX547678/SRR1293042/SRR1293042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANKMB-09A-02R.fusion.vcf	3			
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKMB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKMB-09A-02R	RNA	EFO	SRS602212	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKMB-09A-02R A33581 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33581	SRX547678	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKMB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANKMB-09A-02R A33581 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2182-1./A33581.fastq	SRR1791087	@dbgap@:reads/SRP011999/SRS602212/SRX547678/SRR1791087/SRR1791087.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_6_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293042	@dbgap@:reads/SRP011999/SRS602212/SRX547678/SRR1293042/SRR1293042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANKMB-09A-02R.indel.vcf	3			
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKMB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKMB-09A-02R	RNA	EFO	SRS602212	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKMB-09A-02R A33581 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33581	SRX547678	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKMB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANKMB-09A-02R A33581 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2182-1./A33581.fastq	SRR1791087	@dbgap@:reads/SRP011999/SRS602212/SRX547678/SRR1791087/SRR1791087.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_6_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293042	@dbgap@:reads/SRP011999/SRS602212/SRX547678/SRR1293042/SRR1293042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANKMB-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKRG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKRG-03A-02R	RNA	EFO	SRS602198	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKRG-03A-02R A33585 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33585	SRX547647	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKRG-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANKRG-03A-02R A33585 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2170-1./A33585.fastq	SRR1791108	@dbgap@:reads/SRP011999/SRS602198/SRX547647/SRR1791108/SRR1791108.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_2_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293064	@dbgap@:reads/SRP011999/SRS602198/SRX547647/SRR1293064/SRR1293064.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANKRG-03A-02R.exon.quantification.txt	3			
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKRG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKRG-03A-02R	RNA	EFO	SRS602198	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKRG-03A-02R A33585 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33585	SRX547647	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKRG-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANKRG-03A-02R A33585 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2170-1./A33585.fastq	SRR1791108	@dbgap@:reads/SRP011999/SRS602198/SRX547647/SRR1791108/SRR1791108.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_2_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293064	@dbgap@:reads/SRP011999/SRS602198/SRX547647/SRR1293064/SRR1293064.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANKRG-03A-02R.gene.quantification.txt	3			
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKRG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKRG-03A-02R	RNA	EFO	SRS602198	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKRG-03A-02R A33585 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33585	SRX547647	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKRG-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANKRG-03A-02R A33585 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2170-1./A33585.fastq	SRR1791108	@dbgap@:reads/SRP011999/SRS602198/SRX547647/SRR1791108/SRR1791108.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_2_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293064	@dbgap@:reads/SRP011999/SRS602198/SRX547647/SRR1293064/SRR1293064.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANKRG-03A-02R.isoform.quantification.txt	3			
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKRG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKRG-03A-02R	RNA	EFO	SRS602198	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKRG-03A-02R A33585 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33585	SRX547647	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKRG-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANKRG-03A-02R A33585 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2170-1./A33585.fastq	SRR1791108	@dbgap@:reads/SRP011999/SRS602198/SRX547647/SRR1791108/SRR1791108.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_2_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293064	@dbgap@:reads/SRP011999/SRS602198/SRX547647/SRR1293064/SRR1293064.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANKRG-03A-02R.fusion.vcf	3			
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKRG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKRG-03A-02R	RNA	EFO	SRS602198	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKRG-03A-02R A33585 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33585	SRX547647	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKRG-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANKRG-03A-02R A33585 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2170-1./A33585.fastq	SRR1791108	@dbgap@:reads/SRP011999/SRS602198/SRX547647/SRR1791108/SRR1791108.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_2_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293064	@dbgap@:reads/SRP011999/SRS602198/SRX547647/SRR1293064/SRR1293064.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANKRG-03A-02R.indel.vcf	3			
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANKRG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKRG-03A-02R	RNA	EFO	SRS602198	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANKRG-03A-02R A33585 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33585	SRX547647	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANKRG-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANKRG-03A-02R A33585 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2170-1./A33585.fastq	SRR1791108	@dbgap@:reads/SRP011999/SRS602198/SRX547647/SRR1791108/SRR1791108.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_2_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293064	@dbgap@:reads/SRP011999/SRS602198/SRX547647/SRR1293064/SRR1293064.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANKRG-03A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANLIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-01R	RNA	EFO	SRS602164	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-01R A32694 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32694	SRX543394	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANLIC-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANLIC-09A-01R A32694 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2218-1./A32694.fastq	SRR1791017	@dbgap@:reads/SRP011999/SRS602164/SRX543394/SRR1791017/SRR1791017.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_6_TCTACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288063	@dbgap@:reads/SRP011999/SRS602164/SRX543394/SRR1288063/SRR1288063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANLIC-09A-01R.exon.quantification.txt	3			
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANLIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-01R	RNA	EFO	SRS602164	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-01R A32694 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32694	SRX543394	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANLIC-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANLIC-09A-01R A32694 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2218-1./A32694.fastq	SRR1791017	@dbgap@:reads/SRP011999/SRS602164/SRX543394/SRR1791017/SRR1791017.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_6_TCTACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288063	@dbgap@:reads/SRP011999/SRS602164/SRX543394/SRR1288063/SRR1288063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANLIC-09A-01R.gene.quantification.txt	3			
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANLIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-01R	RNA	EFO	SRS602164	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-01R A32694 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32694	SRX543394	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANLIC-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANLIC-09A-01R A32694 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2218-1./A32694.fastq	SRR1791017	@dbgap@:reads/SRP011999/SRS602164/SRX543394/SRR1791017/SRR1791017.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_6_TCTACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288063	@dbgap@:reads/SRP011999/SRS602164/SRX543394/SRR1288063/SRR1288063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANLIC-09A-01R.isoform.quantification.txt	3			
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANLIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-01R	RNA	EFO	SRS602164	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-01R A32694 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32694	SRX543394	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANLIC-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANLIC-09A-01R A32694 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2218-1./A32694.fastq	SRR1791017	@dbgap@:reads/SRP011999/SRS602164/SRX543394/SRR1791017/SRR1791017.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_6_TCTACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288063	@dbgap@:reads/SRP011999/SRS602164/SRX543394/SRR1288063/SRR1288063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANLIC-09A-01R.fusion.vcf	3			
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANLIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-01R	RNA	EFO	SRS602164	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-01R A32694 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32694	SRX543394	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANLIC-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANLIC-09A-01R A32694 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2218-1./A32694.fastq	SRR1791017	@dbgap@:reads/SRP011999/SRS602164/SRX543394/SRR1791017/SRR1791017.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_6_TCTACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288063	@dbgap@:reads/SRP011999/SRS602164/SRX543394/SRR1288063/SRR1288063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANLIC-09A-01R.indel.vcf	3			
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANLIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-01R	RNA	EFO	SRS602164	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-01R A32694 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32694	SRX543394	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANLIC-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANLIC-09A-01R A32694 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2218-1./A32694.fastq	SRR1791017	@dbgap@:reads/SRP011999/SRS602164/SRX543394/SRR1791017/SRR1791017.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_6_TCTACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288063	@dbgap@:reads/SRP011999/SRS602164/SRX543394/SRR1288063/SRR1288063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANLIC-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANLIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-02R	RNA	EFO	SRS2416211	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-02R A61062 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61062	SRX3073856	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANLIC-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANLIC-09A-02R A61062 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4505-1./A61062.fastq	SRR5912865	@dbgap@:reads/SRP011999/SRS2416211/SRX3073856/SRR5912865/SRR5912865.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANLIC-09A-02R.exon.quantification.txt	3			
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANLIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-02R	RNA	EFO	SRS2416211	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-02R A61062 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61062	SRX3073856	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANLIC-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANLIC-09A-02R A61062 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4505-1./A61062.fastq	SRR5912865	@dbgap@:reads/SRP011999/SRS2416211/SRX3073856/SRR5912865/SRR5912865.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANLIC-09A-02R.gene.quantification.txt	3			
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANLIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-02R	RNA	EFO	SRS2416211	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-02R A61062 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61062	SRX3073856	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANLIC-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANLIC-09A-02R A61062 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4505-1./A61062.fastq	SRR5912865	@dbgap@:reads/SRP011999/SRS2416211/SRX3073856/SRR5912865/SRR5912865.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANLIC-09A-02R.isoform.quantification.txt	3			
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANLIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-02R	RNA	EFO	SRS2416211	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-02R A61062 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61062	SRX3073856	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANLIC-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANLIC-09A-02R A61062 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4505-1./A61062.fastq	SRR5912865	@dbgap@:reads/SRP011999/SRS2416211/SRX3073856/SRR5912865/SRR5912865.sra	1								bcgsc.ca:Protocol:mRNAseq-Fusion-DeFuse:01		TARGET-10-PANLIC-09A-02R.results.filtered.tsv	3			
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANLIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-02R	RNA	EFO	SRS2416211	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-02R A61062 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61062	SRX3073856	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANLIC-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANLIC-09A-02R A61062 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4505-1./A61062.fastq	SRR5912865	@dbgap@:reads/SRP011999/SRS2416211/SRX3073856/SRR5912865/SRR5912865.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANLIC-09A-02R.fusion.vcf	3			
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANLIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-02R	RNA	EFO	SRS2416211	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-02R A61062 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61062	SRX3073856	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANLIC-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANLIC-09A-02R A61062 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4505-1./A61062.fastq	SRR5912865	@dbgap@:reads/SRP011999/SRS2416211/SRX3073856/SRR5912865/SRR5912865.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANLIC-09A-02R.indel.vcf	3			
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANLIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-02R	RNA	EFO	SRS2416211	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLIC-09A-02R A61062 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61062	SRX3073856	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANLIC-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANLIC-09A-02R A61062 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4505-1./A61062.fastq	SRR5912865	@dbgap@:reads/SRP011999/SRS2416211/SRX3073856/SRR5912865/SRR5912865.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-10-PANLIC-09A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Tab:01	TARGET-10-PANLIC-09A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANPJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANPJI-09A-01R	RNA	EFO	SRS602107	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANPJI-09A-01R A32695 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32695	SRX543468	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANPJI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANPJI-09A-01R A32695 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2228-1./A32695.fastq	SRR1791021	@dbgap@:reads/SRP011999/SRS602107/SRX543468/SRR1791021/SRR1791021.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_1_AGTCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288014	@dbgap@:reads/SRP011999/SRS602107/SRX543468/SRR1288014/SRR1288014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANPJI-09A-01R.exon.quantification.txt	3			
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANPJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANPJI-09A-01R	RNA	EFO	SRS602107	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANPJI-09A-01R A32695 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32695	SRX543468	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANPJI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANPJI-09A-01R A32695 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2228-1./A32695.fastq	SRR1791021	@dbgap@:reads/SRP011999/SRS602107/SRX543468/SRR1791021/SRR1791021.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_1_AGTCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288014	@dbgap@:reads/SRP011999/SRS602107/SRX543468/SRR1288014/SRR1288014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANPJI-09A-01R.gene.quantification.txt	3			
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANPJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANPJI-09A-01R	RNA	EFO	SRS602107	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANPJI-09A-01R A32695 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32695	SRX543468	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANPJI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANPJI-09A-01R A32695 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2228-1./A32695.fastq	SRR1791021	@dbgap@:reads/SRP011999/SRS602107/SRX543468/SRR1791021/SRR1791021.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_1_AGTCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288014	@dbgap@:reads/SRP011999/SRS602107/SRX543468/SRR1288014/SRR1288014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANPJI-09A-01R.isoform.quantification.txt	3			
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANPJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANPJI-09A-01R	RNA	EFO	SRS602107	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANPJI-09A-01R A32695 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32695	SRX543468	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANPJI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANPJI-09A-01R A32695 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2228-1./A32695.fastq	SRR1791021	@dbgap@:reads/SRP011999/SRS602107/SRX543468/SRR1791021/SRR1791021.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_1_AGTCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288014	@dbgap@:reads/SRP011999/SRS602107/SRX543468/SRR1288014/SRR1288014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANPJI-09A-01R.fusion.vcf	3			
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANPJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANPJI-09A-01R	RNA	EFO	SRS602107	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANPJI-09A-01R A32695 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32695	SRX543468	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANPJI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANPJI-09A-01R A32695 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2228-1./A32695.fastq	SRR1791021	@dbgap@:reads/SRP011999/SRS602107/SRX543468/SRR1791021/SRR1791021.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_1_AGTCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288014	@dbgap@:reads/SRP011999/SRS602107/SRX543468/SRR1288014/SRR1288014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANPJI-09A-01R.indel.vcf	3			
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANPJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANPJI-09A-01R	RNA	EFO	SRS602107	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANPJI-09A-01R A32695 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32695	SRX543468	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANPJI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANPJI-09A-01R A32695 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2228-1./A32695.fastq	SRR1791021	@dbgap@:reads/SRP011999/SRS602107/SRX543468/SRR1791021/SRR1791021.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_1_AGTCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288014	@dbgap@:reads/SRP011999/SRS602107/SRX543468/SRR1288014/SRR1288014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANPJI-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-01R	RNA	EFO	SRS602190	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-01R A32703 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32703	SRX547576	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANRDC-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANRDC-03A-01R A32703 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2283-1./A32703.fastq	SRR1791051	@dbgap@:reads/SRP011999/SRS602190/SRX547576/SRR1791051/SRR1791051.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_2_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292960	@dbgap@:reads/SRP011999/SRS602190/SRX547576/SRR1292960/SRR1292960.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANRDC-03A-01R.exon.quantification.txt	3			
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-01R	RNA	EFO	SRS602190	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-01R A32703 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32703	SRX547576	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANRDC-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANRDC-03A-01R A32703 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2283-1./A32703.fastq	SRR1791051	@dbgap@:reads/SRP011999/SRS602190/SRX547576/SRR1791051/SRR1791051.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_2_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292960	@dbgap@:reads/SRP011999/SRS602190/SRX547576/SRR1292960/SRR1292960.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANRDC-03A-01R.gene.quantification.txt	3			
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-01R	RNA	EFO	SRS602190	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-01R A32703 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32703	SRX547576	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANRDC-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANRDC-03A-01R A32703 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2283-1./A32703.fastq	SRR1791051	@dbgap@:reads/SRP011999/SRS602190/SRX547576/SRR1791051/SRR1791051.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_2_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292960	@dbgap@:reads/SRP011999/SRS602190/SRX547576/SRR1292960/SRR1292960.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANRDC-03A-01R.isoform.quantification.txt	3			
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-01R	RNA	EFO	SRS602190	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-01R A32703 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32703	SRX547576	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANRDC-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANRDC-03A-01R A32703 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2283-1./A32703.fastq	SRR1791051	@dbgap@:reads/SRP011999/SRS602190/SRX547576/SRR1791051/SRR1791051.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_2_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292960	@dbgap@:reads/SRP011999/SRS602190/SRX547576/SRR1292960/SRR1292960.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANRDC-03A-01R.fusion.vcf	3			
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-01R	RNA	EFO	SRS602190	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-01R A32703 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32703	SRX547576	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANRDC-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANRDC-03A-01R A32703 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2283-1./A32703.fastq	SRR1791051	@dbgap@:reads/SRP011999/SRS602190/SRX547576/SRR1791051/SRR1791051.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_2_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292960	@dbgap@:reads/SRP011999/SRS602190/SRX547576/SRR1292960/SRR1292960.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANRDC-03A-01R.indel.vcf	3			
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-01R	RNA	EFO	SRS602190	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-01R A32703 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32703	SRX547576	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANRDC-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANRDC-03A-01R A32703 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2283-1./A32703.fastq	SRR1791051	@dbgap@:reads/SRP011999/SRS602190/SRX547576/SRR1791051/SRR1791051.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_2_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292960	@dbgap@:reads/SRP011999/SRS602190/SRX547576/SRR1292960/SRR1292960.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANRDC-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-02R	RNA	EFO	SRS2416208	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-02R A61071 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61071	SRX3073860	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANRDC-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANRDC-03A-02R A61071 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4506-1./A61071.fastq	SRR5912870	@dbgap@:reads/SRP011999/SRS2416208/SRX3073860/SRR5912870/SRR5912870.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANRDC-03A-02R.exon.quantification.txt	3			
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-02R	RNA	EFO	SRS2416208	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-02R A61071 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61071	SRX3073860	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANRDC-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANRDC-03A-02R A61071 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4506-1./A61071.fastq	SRR5912870	@dbgap@:reads/SRP011999/SRS2416208/SRX3073860/SRR5912870/SRR5912870.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANRDC-03A-02R.gene.quantification.txt	3			
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-02R	RNA	EFO	SRS2416208	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-02R A61071 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61071	SRX3073860	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANRDC-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANRDC-03A-02R A61071 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4506-1./A61071.fastq	SRR5912870	@dbgap@:reads/SRP011999/SRS2416208/SRX3073860/SRR5912870/SRR5912870.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANRDC-03A-02R.isoform.quantification.txt	3			
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-02R	RNA	EFO	SRS2416208	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-02R A61071 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61071	SRX3073860	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANRDC-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANRDC-03A-02R A61071 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4506-1./A61071.fastq	SRR5912870	@dbgap@:reads/SRP011999/SRS2416208/SRX3073860/SRR5912870/SRR5912870.sra	1								bcgsc.ca:Protocol:mRNAseq-Fusion-DeFuse:01		TARGET-10-PANRDC-03A-02R.results.filtered.tsv	3			
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-02R	RNA	EFO	SRS2416208	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-02R A61071 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61071	SRX3073860	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANRDC-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANRDC-03A-02R A61071 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4506-1./A61071.fastq	SRR5912870	@dbgap@:reads/SRP011999/SRS2416208/SRX3073860/SRR5912870/SRR5912870.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANRDC-03A-02R.fusion.vcf	3			
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-02R	RNA	EFO	SRS2416208	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-02R A61071 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61071	SRX3073860	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANRDC-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANRDC-03A-02R A61071 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4506-1./A61071.fastq	SRR5912870	@dbgap@:reads/SRP011999/SRS2416208/SRX3073860/SRR5912870/SRR5912870.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANRDC-03A-02R.indel.vcf	3			
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-02R	RNA	EFO	SRS2416208	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRDC-03A-02R A61071 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61071	SRX3073860	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANRDC-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANRDC-03A-02R A61071 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4506-1./A61071.fastq	SRR5912870	@dbgap@:reads/SRP011999/SRS2416208/SRX3073860/SRR5912870/SRR5912870.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-10-PANRDC-03A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Tab:01	TARGET-10-PANRDC-03A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANRWG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRWG-09A-01R	RNA	EFO	SRS602137	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRWG-09A-01R A32704 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32704	SRX547575	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANRWG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANRWG-09A-01R A32704 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2281-1./A32704.fastq	SRR1791043	@dbgap@:reads/SRP011999/SRS602137/SRX547575/SRR1791043/SRR1791043.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_8_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293011	@dbgap@:reads/SRP011999/SRS602137/SRX547575/SRR1293011/SRR1293011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANRWG-09A-01R.exon.quantification.txt	3			
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANRWG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRWG-09A-01R	RNA	EFO	SRS602137	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRWG-09A-01R A32704 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32704	SRX547575	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANRWG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANRWG-09A-01R A32704 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2281-1./A32704.fastq	SRR1791043	@dbgap@:reads/SRP011999/SRS602137/SRX547575/SRR1791043/SRR1791043.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_8_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293011	@dbgap@:reads/SRP011999/SRS602137/SRX547575/SRR1293011/SRR1293011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANRWG-09A-01R.gene.quantification.txt	3			
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANRWG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRWG-09A-01R	RNA	EFO	SRS602137	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRWG-09A-01R A32704 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32704	SRX547575	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANRWG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANRWG-09A-01R A32704 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2281-1./A32704.fastq	SRR1791043	@dbgap@:reads/SRP011999/SRS602137/SRX547575/SRR1791043/SRR1791043.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_8_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293011	@dbgap@:reads/SRP011999/SRS602137/SRX547575/SRR1293011/SRR1293011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANRWG-09A-01R.isoform.quantification.txt	3			
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANRWG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRWG-09A-01R	RNA	EFO	SRS602137	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRWG-09A-01R A32704 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32704	SRX547575	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANRWG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANRWG-09A-01R A32704 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2281-1./A32704.fastq	SRR1791043	@dbgap@:reads/SRP011999/SRS602137/SRX547575/SRR1791043/SRR1791043.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_8_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293011	@dbgap@:reads/SRP011999/SRS602137/SRX547575/SRR1293011/SRR1293011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANRWG-09A-01R.fusion.vcf	3			
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANRWG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRWG-09A-01R	RNA	EFO	SRS602137	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRWG-09A-01R A32704 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32704	SRX547575	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANRWG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANRWG-09A-01R A32704 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2281-1./A32704.fastq	SRR1791043	@dbgap@:reads/SRP011999/SRS602137/SRX547575/SRR1791043/SRR1791043.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_8_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293011	@dbgap@:reads/SRP011999/SRS602137/SRX547575/SRR1293011/SRR1293011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANRWG-09A-01R.indel.vcf	3			
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANRWG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRWG-09A-01R	RNA	EFO	SRS602137	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRWG-09A-01R A32704 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32704	SRX547575	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANRWG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANRWG-09A-01R A32704 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2281-1./A32704.fastq	SRR1791043	@dbgap@:reads/SRP011999/SRS602137/SRX547575/SRR1791043/SRR1791043.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_8_GATCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293011	@dbgap@:reads/SRP011999/SRS602137/SRX547575/SRR1293011/SRR1293011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANRWG-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANRYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRYM-09A-01R	RNA	EFO	SRS602153	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRYM-09A-01R A32705 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32705	SRX547640	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANRYM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANRYM-09A-01R A32705 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2277-1./A32705.fastq	SRR1791104	@dbgap@:reads/SRP011999/SRS602153/SRX547640/SRR1791104/SRR1791104.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_4_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293016	@dbgap@:reads/SRP011999/SRS602153/SRX547640/SRR1293016/SRR1293016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANRYM-09A-01R.exon.quantification.txt	3			
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANRYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRYM-09A-01R	RNA	EFO	SRS602153	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRYM-09A-01R A32705 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32705	SRX547640	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANRYM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANRYM-09A-01R A32705 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2277-1./A32705.fastq	SRR1791104	@dbgap@:reads/SRP011999/SRS602153/SRX547640/SRR1791104/SRR1791104.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_4_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293016	@dbgap@:reads/SRP011999/SRS602153/SRX547640/SRR1293016/SRR1293016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANRYM-09A-01R.gene.quantification.txt	3			
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANRYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRYM-09A-01R	RNA	EFO	SRS602153	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRYM-09A-01R A32705 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32705	SRX547640	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANRYM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANRYM-09A-01R A32705 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2277-1./A32705.fastq	SRR1791104	@dbgap@:reads/SRP011999/SRS602153/SRX547640/SRR1791104/SRR1791104.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_4_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293016	@dbgap@:reads/SRP011999/SRS602153/SRX547640/SRR1293016/SRR1293016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANRYM-09A-01R.isoform.quantification.txt	3			
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANRYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRYM-09A-01R	RNA	EFO	SRS602153	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRYM-09A-01R A32705 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32705	SRX547640	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANRYM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANRYM-09A-01R A32705 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2277-1./A32705.fastq	SRR1791104	@dbgap@:reads/SRP011999/SRS602153/SRX547640/SRR1791104/SRR1791104.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_4_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293016	@dbgap@:reads/SRP011999/SRS602153/SRX547640/SRR1293016/SRR1293016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANRYM-09A-01R.fusion.vcf	3			
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANRYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRYM-09A-01R	RNA	EFO	SRS602153	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRYM-09A-01R A32705 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32705	SRX547640	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANRYM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANRYM-09A-01R A32705 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2277-1./A32705.fastq	SRR1791104	@dbgap@:reads/SRP011999/SRS602153/SRX547640/SRR1791104/SRR1791104.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_4_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293016	@dbgap@:reads/SRP011999/SRS602153/SRX547640/SRR1293016/SRR1293016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANRYM-09A-01R.indel.vcf	3			
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANRYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRYM-09A-01R	RNA	EFO	SRS602153	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANRYM-09A-01R A32705 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32705	SRX547640	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANRYM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANRYM-09A-01R A32705 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2277-1./A32705.fastq	SRR1791104	@dbgap@:reads/SRP011999/SRS602153/SRX547640/SRR1791104/SRR1791104.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_4_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293016	@dbgap@:reads/SRP011999/SRS602153/SRX547640/SRR1293016/SRR1293016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANRYM-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSBR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBR-09A-01R	RNA	EFO	SRS602171	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBR-09A-01R A32706 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32706	SRX547637	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSBR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANSBR-09A-01R A32706 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2284-1./A32706.fastq	SRR1791053	@dbgap@:reads/SRP011999/SRS602171/SRX547637/SRR1791053/SRR1791053.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_3_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292999	@dbgap@:reads/SRP011999/SRS602171/SRX547637/SRR1292999/SRR1292999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSBR-09A-01R.exon.quantification.txt	3			
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSBR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBR-09A-01R	RNA	EFO	SRS602171	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBR-09A-01R A32706 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32706	SRX547637	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSBR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANSBR-09A-01R A32706 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2284-1./A32706.fastq	SRR1791053	@dbgap@:reads/SRP011999/SRS602171/SRX547637/SRR1791053/SRR1791053.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_3_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292999	@dbgap@:reads/SRP011999/SRS602171/SRX547637/SRR1292999/SRR1292999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSBR-09A-01R.gene.quantification.txt	3			
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSBR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBR-09A-01R	RNA	EFO	SRS602171	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBR-09A-01R A32706 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32706	SRX547637	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSBR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANSBR-09A-01R A32706 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2284-1./A32706.fastq	SRR1791053	@dbgap@:reads/SRP011999/SRS602171/SRX547637/SRR1791053/SRR1791053.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_3_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292999	@dbgap@:reads/SRP011999/SRS602171/SRX547637/SRR1292999/SRR1292999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSBR-09A-01R.isoform.quantification.txt	3			
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSBR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBR-09A-01R	RNA	EFO	SRS602171	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBR-09A-01R A32706 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32706	SRX547637	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSBR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANSBR-09A-01R A32706 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2284-1./A32706.fastq	SRR1791053	@dbgap@:reads/SRP011999/SRS602171/SRX547637/SRR1791053/SRR1791053.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_3_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292999	@dbgap@:reads/SRP011999/SRS602171/SRX547637/SRR1292999/SRR1292999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANSBR-09A-01R.fusion.vcf	3			
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSBR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBR-09A-01R	RNA	EFO	SRS602171	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBR-09A-01R A32706 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32706	SRX547637	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSBR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANSBR-09A-01R A32706 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2284-1./A32706.fastq	SRR1791053	@dbgap@:reads/SRP011999/SRS602171/SRX547637/SRR1791053/SRR1791053.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_3_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292999	@dbgap@:reads/SRP011999/SRS602171/SRX547637/SRR1292999/SRR1292999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANSBR-09A-01R.indel.vcf	3			
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSBR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBR-09A-01R	RNA	EFO	SRS602171	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBR-09A-01R A32706 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32706	SRX547637	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSBR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANSBR-09A-01R A32706 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2284-1./A32706.fastq	SRR1791053	@dbgap@:reads/SRP011999/SRS602171/SRX547637/SRR1791053/SRR1791053.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_3_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292999	@dbgap@:reads/SRP011999/SRS602171/SRX547637/SRR1292999/SRR1292999.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANSBR-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSDA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSDA-04A-02R	RNA	EFO	SRS602197	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSDA-04A-02R A33583 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33583	SRX547666	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSDA-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSDA-04A-02R A33583 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2179-1./A33583.fastq	SRR1791102	@dbgap@:reads/SRP011999/SRS602197/SRX547666/SRR1791102/SRR1791102.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_3_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293034	@dbgap@:reads/SRP011999/SRS602197/SRX547666/SRR1293034/SRR1293034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSDA-04A-02R.exon.quantification.txt	3			
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSDA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSDA-04A-02R	RNA	EFO	SRS602197	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSDA-04A-02R A33583 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33583	SRX547666	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSDA-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSDA-04A-02R A33583 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2179-1./A33583.fastq	SRR1791102	@dbgap@:reads/SRP011999/SRS602197/SRX547666/SRR1791102/SRR1791102.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_3_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293034	@dbgap@:reads/SRP011999/SRS602197/SRX547666/SRR1293034/SRR1293034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSDA-04A-02R.gene.quantification.txt	3			
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSDA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSDA-04A-02R	RNA	EFO	SRS602197	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSDA-04A-02R A33583 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33583	SRX547666	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSDA-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSDA-04A-02R A33583 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2179-1./A33583.fastq	SRR1791102	@dbgap@:reads/SRP011999/SRS602197/SRX547666/SRR1791102/SRR1791102.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_3_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293034	@dbgap@:reads/SRP011999/SRS602197/SRX547666/SRR1293034/SRR1293034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSDA-04A-02R.isoform.quantification.txt	3			
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSDA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSDA-04A-02R	RNA	EFO	SRS602197	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSDA-04A-02R A33583 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33583	SRX547666	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSDA-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSDA-04A-02R A33583 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2179-1./A33583.fastq	SRR1791102	@dbgap@:reads/SRP011999/SRS602197/SRX547666/SRR1791102/SRR1791102.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_3_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293034	@dbgap@:reads/SRP011999/SRS602197/SRX547666/SRR1293034/SRR1293034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANSDA-04A-02R.fusion.vcf	3			
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSDA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSDA-04A-02R	RNA	EFO	SRS602197	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSDA-04A-02R A33583 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33583	SRX547666	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSDA-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSDA-04A-02R A33583 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2179-1./A33583.fastq	SRR1791102	@dbgap@:reads/SRP011999/SRS602197/SRX547666/SRR1791102/SRR1791102.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_3_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293034	@dbgap@:reads/SRP011999/SRS602197/SRX547666/SRR1293034/SRR1293034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANSDA-04A-02R.indel.vcf	3			
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSDA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSDA-04A-02R	RNA	EFO	SRS602197	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSDA-04A-02R A33583 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33583	SRX547666	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSDA-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSDA-04A-02R A33583 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2179-1./A33583.fastq	SRR1791102	@dbgap@:reads/SRP011999/SRS602197/SRX547666/SRR1791102/SRR1791102.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_3_ACCCAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293034	@dbgap@:reads/SRP011999/SRS602197/SRX547666/SRR1293034/SRR1293034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANSDA-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSDA-09A-02R	RNA	EFO	SRS602196	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSDA-09A-02R A33613 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33613	SRX547668	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSDA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSDA-09A-02R A33613 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2178-1./A33613.fastq	SRR1791082	@dbgap@:reads/SRP011999/SRS602196/SRX547668/SRR1791082/SRR1791082.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_2_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293026	@dbgap@:reads/SRP011999/SRS602196/SRX547668/SRR1293026/SRR1293026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSDA-09A-02R.exon.quantification.txt	3			
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSDA-09A-02R	RNA	EFO	SRS602196	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSDA-09A-02R A33613 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33613	SRX547668	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSDA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSDA-09A-02R A33613 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2178-1./A33613.fastq	SRR1791082	@dbgap@:reads/SRP011999/SRS602196/SRX547668/SRR1791082/SRR1791082.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_2_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293026	@dbgap@:reads/SRP011999/SRS602196/SRX547668/SRR1293026/SRR1293026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSDA-09A-02R.gene.quantification.txt	3			
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSDA-09A-02R	RNA	EFO	SRS602196	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSDA-09A-02R A33613 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33613	SRX547668	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSDA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSDA-09A-02R A33613 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2178-1./A33613.fastq	SRR1791082	@dbgap@:reads/SRP011999/SRS602196/SRX547668/SRR1791082/SRR1791082.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_2_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293026	@dbgap@:reads/SRP011999/SRS602196/SRX547668/SRR1293026/SRR1293026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSDA-09A-02R.isoform.quantification.txt	3			
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSDA-09A-02R	RNA	EFO	SRS602196	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSDA-09A-02R A33613 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33613	SRX547668	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSDA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSDA-09A-02R A33613 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2178-1./A33613.fastq	SRR1791082	@dbgap@:reads/SRP011999/SRS602196/SRX547668/SRR1791082/SRR1791082.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_2_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293026	@dbgap@:reads/SRP011999/SRS602196/SRX547668/SRR1293026/SRR1293026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANSDA-09A-02R.fusion.vcf	3			
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSDA-09A-02R	RNA	EFO	SRS602196	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSDA-09A-02R A33613 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33613	SRX547668	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSDA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSDA-09A-02R A33613 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2178-1./A33613.fastq	SRR1791082	@dbgap@:reads/SRP011999/SRS602196/SRX547668/SRR1791082/SRR1791082.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_2_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293026	@dbgap@:reads/SRP011999/SRS602196/SRX547668/SRR1293026/SRR1293026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANSDA-09A-02R.indel.vcf	3			
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSDA-09A-02R	RNA	EFO	SRS602196	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSDA-09A-02R A33613 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33613	SRX547668	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSDA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSDA-09A-02R A33613 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2178-1./A33613.fastq	SRR1791082	@dbgap@:reads/SRP011999/SRS602196/SRX547668/SRR1791082/SRR1791082.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_2_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293026	@dbgap@:reads/SRP011999/SRS602196/SRX547668/SRR1293026/SRR1293026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANSDA-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSHK-04A-02R	RNA	EFO	SRS602203	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSHK-04A-02R A33584 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33584	SRX547684	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSHK-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSHK-04A-02R A33584 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2181-1./A33584.fastq	SRR1791024	@dbgap@:reads/SRP011999/SRS602203/SRX547684/SRR1791024/SRR1791024.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 35000, gene with 1-5x coverage > 55%, exon-intron ratio < 1, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_5_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293024	@dbgap@:reads/SRP011999/SRS602203/SRX547684/SRR1293024/SRR1293024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSHK-04A-02R.exon.quantification.txt	3			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSHK-04A-02R	RNA	EFO	SRS602203	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSHK-04A-02R A33584 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33584	SRX547684	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSHK-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSHK-04A-02R A33584 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2181-1./A33584.fastq	SRR1791024	@dbgap@:reads/SRP011999/SRS602203/SRX547684/SRR1791024/SRR1791024.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 35000, gene with 1-5x coverage > 55%, exon-intron ratio < 1, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_5_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293024	@dbgap@:reads/SRP011999/SRS602203/SRX547684/SRR1293024/SRR1293024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSHK-04A-02R.gene.quantification.txt	3			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSHK-04A-02R	RNA	EFO	SRS602203	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSHK-04A-02R A33584 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33584	SRX547684	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSHK-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSHK-04A-02R A33584 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2181-1./A33584.fastq	SRR1791024	@dbgap@:reads/SRP011999/SRS602203/SRX547684/SRR1791024/SRR1791024.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 35000, gene with 1-5x coverage > 55%, exon-intron ratio < 1, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_5_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293024	@dbgap@:reads/SRP011999/SRS602203/SRX547684/SRR1293024/SRR1293024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSHK-04A-02R.isoform.quantification.txt	3			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSHK-04A-02R	RNA	EFO	SRS602203	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSHK-04A-02R A33584 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33584	SRX547684	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSHK-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSHK-04A-02R A33584 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2181-1./A33584.fastq	SRR1791024	@dbgap@:reads/SRP011999/SRS602203/SRX547684/SRR1791024/SRR1791024.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 35000, gene with 1-5x coverage > 55%, exon-intron ratio < 1, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_5_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293024	@dbgap@:reads/SRP011999/SRS602203/SRX547684/SRR1293024/SRR1293024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANSHK-04A-02R.fusion.vcf	3			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSHK-04A-02R	RNA	EFO	SRS602203	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSHK-04A-02R A33584 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33584	SRX547684	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSHK-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSHK-04A-02R A33584 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2181-1./A33584.fastq	SRR1791024	@dbgap@:reads/SRP011999/SRS602203/SRX547684/SRR1791024/SRR1791024.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 35000, gene with 1-5x coverage > 55%, exon-intron ratio < 1, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_5_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293024	@dbgap@:reads/SRP011999/SRS602203/SRX547684/SRR1293024/SRR1293024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANSHK-04A-02R.indel.vcf	3			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSHK-04A-02R	RNA	EFO	SRS602203	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSHK-04A-02R A33584 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33584	SRX547684	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSHK-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSHK-04A-02R A33584 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2181-1./A33584.fastq	SRR1791024	@dbgap@:reads/SRP011999/SRS602203/SRX547684/SRR1791024/SRR1791024.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 35000, gene with 1-5x coverage > 55%, exon-intron ratio < 1, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_5_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293024	@dbgap@:reads/SRP011999/SRS602203/SRX547684/SRR1293024/SRR1293024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANSHK-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSHK-09A-01R	RNA	EFO	SRS602065	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSHK-09A-01R A32653 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32653	SRX543403	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSHK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PANSHK-09A-01R A32653 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2223-1./A32653.fastq	SRR1791116	@dbgap@:reads/SRP011999/SRS602065/SRX543403/SRR1791116/SRR1791116.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_4_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288061	@dbgap@:reads/SRP011999/SRS602065/SRX543403/SRR1288061/SRR1288061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSHK-09A-01R.exon.quantification.txt	3			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSHK-09A-01R	RNA	EFO	SRS602065	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSHK-09A-01R A32653 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32653	SRX543403	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSHK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PANSHK-09A-01R A32653 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2223-1./A32653.fastq	SRR1791116	@dbgap@:reads/SRP011999/SRS602065/SRX543403/SRR1791116/SRR1791116.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_4_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288061	@dbgap@:reads/SRP011999/SRS602065/SRX543403/SRR1288061/SRR1288061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSHK-09A-01R.gene.quantification.txt	3			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSHK-09A-01R	RNA	EFO	SRS602065	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSHK-09A-01R A32653 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32653	SRX543403	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSHK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PANSHK-09A-01R A32653 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2223-1./A32653.fastq	SRR1791116	@dbgap@:reads/SRP011999/SRS602065/SRX543403/SRR1791116/SRR1791116.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_4_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288061	@dbgap@:reads/SRP011999/SRS602065/SRX543403/SRR1288061/SRR1288061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSHK-09A-01R.isoform.quantification.txt	3			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSHK-09A-01R	RNA	EFO	SRS602065	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSHK-09A-01R A32653 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32653	SRX543403	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSHK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PANSHK-09A-01R A32653 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2223-1./A32653.fastq	SRR1791116	@dbgap@:reads/SRP011999/SRS602065/SRX543403/SRR1791116/SRR1791116.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_4_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288061	@dbgap@:reads/SRP011999/SRS602065/SRX543403/SRR1288061/SRR1288061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANSHK-09A-01R.fusion.vcf	3			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSHK-09A-01R	RNA	EFO	SRS602065	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSHK-09A-01R A32653 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32653	SRX543403	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSHK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PANSHK-09A-01R A32653 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2223-1./A32653.fastq	SRR1791116	@dbgap@:reads/SRP011999/SRS602065/SRX543403/SRR1791116/SRR1791116.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_4_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288061	@dbgap@:reads/SRP011999/SRS602065/SRX543403/SRR1288061/SRR1288061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANSHK-09A-01R.indel.vcf	3			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSHK-09A-01R	RNA	EFO	SRS602065	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSHK-09A-01R A32653 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32653	SRX543403	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSHK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PANSHK-09A-01R A32653 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2223-1./A32653.fastq	SRR1791116	@dbgap@:reads/SRP011999/SRS602065/SRX543403/SRR1791116/SRR1791116.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_4_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288061	@dbgap@:reads/SRP011999/SRS602065/SRX543403/SRR1288061/SRR1288061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANSHK-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSIA-09A-02R	RNA	EFO	SRS602241	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSIA-09A-02R A33622 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33622	SRX547662	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSIA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSIA-09A-02R A33622 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2186-1./A33622.fastq	SRR1791004	@dbgap@:reads/SRP011999/SRS602241/SRX547662/SRR1791004/SRR1791004.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 1, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_2_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293044	@dbgap@:reads/SRP011999/SRS602241/SRX547662/SRR1293044/SRR1293044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSIA-09A-02R.exon.quantification.txt	3			
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSIA-09A-02R	RNA	EFO	SRS602241	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSIA-09A-02R A33622 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33622	SRX547662	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSIA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSIA-09A-02R A33622 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2186-1./A33622.fastq	SRR1791004	@dbgap@:reads/SRP011999/SRS602241/SRX547662/SRR1791004/SRR1791004.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 1, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_2_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293044	@dbgap@:reads/SRP011999/SRS602241/SRX547662/SRR1293044/SRR1293044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSIA-09A-02R.gene.quantification.txt	3			
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSIA-09A-02R	RNA	EFO	SRS602241	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSIA-09A-02R A33622 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33622	SRX547662	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSIA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSIA-09A-02R A33622 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2186-1./A33622.fastq	SRR1791004	@dbgap@:reads/SRP011999/SRS602241/SRX547662/SRR1791004/SRR1791004.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 1, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_2_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293044	@dbgap@:reads/SRP011999/SRS602241/SRX547662/SRR1293044/SRR1293044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSIA-09A-02R.isoform.quantification.txt	3			
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSIA-09A-02R	RNA	EFO	SRS602241	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSIA-09A-02R A33622 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33622	SRX547662	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSIA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSIA-09A-02R A33622 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2186-1./A33622.fastq	SRR1791004	@dbgap@:reads/SRP011999/SRS602241/SRX547662/SRR1791004/SRR1791004.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 1, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_2_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293044	@dbgap@:reads/SRP011999/SRS602241/SRX547662/SRR1293044/SRR1293044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANSIA-09A-02R.fusion.vcf	3			
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSIA-09A-02R	RNA	EFO	SRS602241	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSIA-09A-02R A33622 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33622	SRX547662	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSIA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSIA-09A-02R A33622 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2186-1./A33622.fastq	SRR1791004	@dbgap@:reads/SRP011999/SRS602241/SRX547662/SRR1791004/SRR1791004.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 1, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_2_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293044	@dbgap@:reads/SRP011999/SRS602241/SRX547662/SRR1293044/SRR1293044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANSIA-09A-02R.indel.vcf	3			
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSIA-09A-02R	RNA	EFO	SRS602241	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSIA-09A-02R A33622 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33622	SRX547662	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSIA-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSIA-09A-02R A33622 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2186-1./A33622.fastq	SRR1791004	@dbgap@:reads/SRP011999/SRS602241/SRX547662/SRR1791004/SRR1791004.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 1, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_2_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293044	@dbgap@:reads/SRP011999/SRS602241/SRX547662/SRR1293044/SRR1293044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANSIA-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSPW-09A-01R	RNA	EFO	SRS602113	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSPW-09A-01R A32713 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32713	SRX547587	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSPW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANSPW-09A-01R A32713 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2275-1./A32713.fastq	SRR1791054	@dbgap@:reads/SRP011999/SRS602113/SRX547587/SRR1791054/SRR1791054.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_2_TGAATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292983	@dbgap@:reads/SRP011999/SRS602113/SRX547587/SRR1292983/SRR1292983.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSPW-09A-01R.exon.quantification.txt	3			
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSPW-09A-01R	RNA	EFO	SRS602113	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSPW-09A-01R A32713 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32713	SRX547587	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSPW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANSPW-09A-01R A32713 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2275-1./A32713.fastq	SRR1791054	@dbgap@:reads/SRP011999/SRS602113/SRX547587/SRR1791054/SRR1791054.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_2_TGAATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292983	@dbgap@:reads/SRP011999/SRS602113/SRX547587/SRR1292983/SRR1292983.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSPW-09A-01R.gene.quantification.txt	3			
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSPW-09A-01R	RNA	EFO	SRS602113	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSPW-09A-01R A32713 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32713	SRX547587	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSPW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANSPW-09A-01R A32713 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2275-1./A32713.fastq	SRR1791054	@dbgap@:reads/SRP011999/SRS602113/SRX547587/SRR1791054/SRR1791054.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_2_TGAATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292983	@dbgap@:reads/SRP011999/SRS602113/SRX547587/SRR1292983/SRR1292983.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSPW-09A-01R.isoform.quantification.txt	3			
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSPW-09A-01R	RNA	EFO	SRS602113	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSPW-09A-01R A32713 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32713	SRX547587	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSPW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANSPW-09A-01R A32713 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2275-1./A32713.fastq	SRR1791054	@dbgap@:reads/SRP011999/SRS602113/SRX547587/SRR1791054/SRR1791054.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_2_TGAATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292983	@dbgap@:reads/SRP011999/SRS602113/SRX547587/SRR1292983/SRR1292983.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANSPW-09A-01R.fusion.vcf	3			
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSPW-09A-01R	RNA	EFO	SRS602113	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSPW-09A-01R A32713 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32713	SRX547587	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSPW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANSPW-09A-01R A32713 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2275-1./A32713.fastq	SRR1791054	@dbgap@:reads/SRP011999/SRS602113/SRX547587/SRR1791054/SRR1791054.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_2_TGAATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292983	@dbgap@:reads/SRP011999/SRS602113/SRX547587/SRR1292983/SRR1292983.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANSPW-09A-01R.indel.vcf	3			
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSPW-09A-01R	RNA	EFO	SRS602113	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSPW-09A-01R A32713 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32713	SRX547587	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSPW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANSPW-09A-01R A32713 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2275-1./A32713.fastq	SRR1791054	@dbgap@:reads/SRP011999/SRS602113/SRX547587/SRR1791054/SRR1791054.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_2_TGAATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292983	@dbgap@:reads/SRP011999/SRS602113/SRX547587/SRR1292983/SRR1292983.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANSPW-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSUL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSUL-09A-01R	RNA	EFO	SRS602162	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSUL-09A-01R A32707 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32707	SRX547608	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSUL-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANSUL-09A-01R A32707 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2280-1./A32707.fastq	SRR1791031	@dbgap@:reads/SRP011999/SRS602162/SRX547608/SRR1791031/SRR1791031.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_7_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292993	@dbgap@:reads/SRP011999/SRS602162/SRX547608/SRR1292993/SRR1292993.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSUL-09A-01R.exon.quantification.txt	3			
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSUL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSUL-09A-01R	RNA	EFO	SRS602162	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSUL-09A-01R A32707 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32707	SRX547608	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSUL-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANSUL-09A-01R A32707 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2280-1./A32707.fastq	SRR1791031	@dbgap@:reads/SRP011999/SRS602162/SRX547608/SRR1791031/SRR1791031.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_7_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292993	@dbgap@:reads/SRP011999/SRS602162/SRX547608/SRR1292993/SRR1292993.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSUL-09A-01R.gene.quantification.txt	3			
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSUL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSUL-09A-01R	RNA	EFO	SRS602162	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSUL-09A-01R A32707 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32707	SRX547608	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSUL-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANSUL-09A-01R A32707 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2280-1./A32707.fastq	SRR1791031	@dbgap@:reads/SRP011999/SRS602162/SRX547608/SRR1791031/SRR1791031.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_7_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292993	@dbgap@:reads/SRP011999/SRS602162/SRX547608/SRR1292993/SRR1292993.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSUL-09A-01R.isoform.quantification.txt	3			
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSUL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSUL-09A-01R	RNA	EFO	SRS602162	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSUL-09A-01R A32707 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32707	SRX547608	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSUL-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANSUL-09A-01R A32707 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2280-1./A32707.fastq	SRR1791031	@dbgap@:reads/SRP011999/SRS602162/SRX547608/SRR1791031/SRR1791031.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_7_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292993	@dbgap@:reads/SRP011999/SRS602162/SRX547608/SRR1292993/SRR1292993.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANSUL-09A-01R.fusion.vcf	3			
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSUL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSUL-09A-01R	RNA	EFO	SRS602162	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSUL-09A-01R A32707 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32707	SRX547608	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSUL-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANSUL-09A-01R A32707 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2280-1./A32707.fastq	SRR1791031	@dbgap@:reads/SRP011999/SRS602162/SRX547608/SRR1791031/SRR1791031.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_7_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292993	@dbgap@:reads/SRP011999/SRS602162/SRX547608/SRR1292993/SRR1292993.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANSUL-09A-01R.indel.vcf	3			
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSUL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSUL-09A-01R	RNA	EFO	SRS602162	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSUL-09A-01R A32707 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32707	SRX547608	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSUL-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANSUL-09A-01R A32707 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2280-1./A32707.fastq	SRR1791031	@dbgap@:reads/SRP011999/SRS602162/SRX547608/SRR1791031/SRR1791031.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_7_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292993	@dbgap@:reads/SRP011999/SRS602162/SRX547608/SRR1292993/SRR1292993.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANSUL-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSXG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSXG-09A-02R	RNA	EFO	SRS602208	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSXG-09A-02R A33624 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33624	SRX547674	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSXG-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSXG-09A-02R A33624 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2180-1./A33624.fastq	SRR1791025	@dbgap@:reads/SRP011999/SRS602208/SRX547674/SRR1791025/SRR1791025.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_4_GCCGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293061	@dbgap@:reads/SRP011999/SRS602208/SRX547674/SRR1293061/SRR1293061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSXG-09A-02R.exon.quantification.txt	3			
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSXG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSXG-09A-02R	RNA	EFO	SRS602208	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSXG-09A-02R A33624 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33624	SRX547674	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSXG-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSXG-09A-02R A33624 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2180-1./A33624.fastq	SRR1791025	@dbgap@:reads/SRP011999/SRS602208/SRX547674/SRR1791025/SRR1791025.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_4_GCCGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293061	@dbgap@:reads/SRP011999/SRS602208/SRX547674/SRR1293061/SRR1293061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSXG-09A-02R.gene.quantification.txt	3			
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSXG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSXG-09A-02R	RNA	EFO	SRS602208	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSXG-09A-02R A33624 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33624	SRX547674	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSXG-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSXG-09A-02R A33624 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2180-1./A33624.fastq	SRR1791025	@dbgap@:reads/SRP011999/SRS602208/SRX547674/SRR1791025/SRR1791025.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_4_GCCGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293061	@dbgap@:reads/SRP011999/SRS602208/SRX547674/SRR1293061/SRR1293061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANSXG-09A-02R.isoform.quantification.txt	3			
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSXG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSXG-09A-02R	RNA	EFO	SRS602208	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSXG-09A-02R A33624 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33624	SRX547674	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSXG-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSXG-09A-02R A33624 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2180-1./A33624.fastq	SRR1791025	@dbgap@:reads/SRP011999/SRS602208/SRX547674/SRR1791025/SRR1791025.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_4_GCCGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293061	@dbgap@:reads/SRP011999/SRS602208/SRX547674/SRR1293061/SRR1293061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANSXG-09A-02R.fusion.vcf	3			
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSXG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSXG-09A-02R	RNA	EFO	SRS602208	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSXG-09A-02R A33624 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33624	SRX547674	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSXG-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSXG-09A-02R A33624 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2180-1./A33624.fastq	SRR1791025	@dbgap@:reads/SRP011999/SRS602208/SRX547674/SRR1791025/SRR1791025.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_4_GCCGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293061	@dbgap@:reads/SRP011999/SRS602208/SRX547674/SRR1293061/SRR1293061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANSXG-09A-02R.indel.vcf	3			
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSXG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSXG-09A-02R	RNA	EFO	SRS602208	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSXG-09A-02R A33624 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33624	SRX547674	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANSXG-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANSXG-09A-02R A33624 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2180-1./A33624.fastq	SRR1791025	@dbgap@:reads/SRP011999/SRS602208/SRX547674/SRR1791025/SRR1791025.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_4_GCCGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293061	@dbgap@:reads/SRP011999/SRS602208/SRX547674/SRR1293061/SRR1293061.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANSXG-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-01R	RNA	EFO	SRS602042	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-01R A32654 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32654	SRX543407	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANTSM-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANTSM-04A-01R A32654 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2233-1./A32654.fastq	SRR1790995	@dbgap@:reads/SRP011999/SRS602042/SRX543407/SRR1790995/SRR1790995.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_6_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288086	@dbgap@:reads/SRP011999/SRS602042/SRX543407/SRR1288086/SRR1288086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANTSM-04A-01R.exon.quantification.txt	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-01R	RNA	EFO	SRS602042	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-01R A32654 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32654	SRX543407	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANTSM-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANTSM-04A-01R A32654 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2233-1./A32654.fastq	SRR1790995	@dbgap@:reads/SRP011999/SRS602042/SRX543407/SRR1790995/SRR1790995.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_6_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288086	@dbgap@:reads/SRP011999/SRS602042/SRX543407/SRR1288086/SRR1288086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANTSM-04A-01R.gene.quantification.txt	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-01R	RNA	EFO	SRS602042	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-01R A32654 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32654	SRX543407	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANTSM-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANTSM-04A-01R A32654 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2233-1./A32654.fastq	SRR1790995	@dbgap@:reads/SRP011999/SRS602042/SRX543407/SRR1790995/SRR1790995.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_6_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288086	@dbgap@:reads/SRP011999/SRS602042/SRX543407/SRR1288086/SRR1288086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANTSM-04A-01R.isoform.quantification.txt	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-01R	RNA	EFO	SRS602042	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-01R A32654 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32654	SRX543407	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANTSM-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANTSM-04A-01R A32654 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2233-1./A32654.fastq	SRR1790995	@dbgap@:reads/SRP011999/SRS602042/SRX543407/SRR1790995/SRR1790995.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_6_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288086	@dbgap@:reads/SRP011999/SRS602042/SRX543407/SRR1288086/SRR1288086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANTSM-04A-01R.fusion.vcf	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-01R	RNA	EFO	SRS602042	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-01R A32654 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32654	SRX543407	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANTSM-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANTSM-04A-01R A32654 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2233-1./A32654.fastq	SRR1790995	@dbgap@:reads/SRP011999/SRS602042/SRX543407/SRR1790995/SRR1790995.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_6_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288086	@dbgap@:reads/SRP011999/SRS602042/SRX543407/SRR1288086/SRR1288086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANTSM-04A-01R.indel.vcf	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-01R	RNA	EFO	SRS602042	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-01R A32654 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32654	SRX543407	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANTSM-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANTSM-04A-01R A32654 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2233-1./A32654.fastq	SRR1790995	@dbgap@:reads/SRP011999/SRS602042/SRX543407/SRR1790995/SRR1790995.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_6_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288086	@dbgap@:reads/SRP011999/SRS602042/SRX543407/SRR1288086/SRR1288086.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANTSM-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-02R	RNA	EFO	SRS2416207	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-02R A61063 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61063	SRX3073861	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANTSM-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANTSM-04A-02R A61063 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4519-1./A61063.fastq	SRR5912876	@dbgap@:reads/SRP011999/SRS2416207/SRX3073861/SRR5912876/SRR5912876.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANTSM-04A-02R.exon.quantification.txt	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-02R	RNA	EFO	SRS2416207	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-02R A61063 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61063	SRX3073861	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANTSM-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANTSM-04A-02R A61063 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4519-1./A61063.fastq	SRR5912876	@dbgap@:reads/SRP011999/SRS2416207/SRX3073861/SRR5912876/SRR5912876.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANTSM-04A-02R.gene.quantification.txt	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-02R	RNA	EFO	SRS2416207	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-02R A61063 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61063	SRX3073861	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANTSM-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANTSM-04A-02R A61063 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4519-1./A61063.fastq	SRR5912876	@dbgap@:reads/SRP011999/SRS2416207/SRX3073861/SRR5912876/SRR5912876.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANTSM-04A-02R.isoform.quantification.txt	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-02R	RNA	EFO	SRS2416207	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-02R A61063 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61063	SRX3073861	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANTSM-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANTSM-04A-02R A61063 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4519-1./A61063.fastq	SRR5912876	@dbgap@:reads/SRP011999/SRS2416207/SRX3073861/SRR5912876/SRR5912876.sra	1								bcgsc.ca:Protocol:mRNAseq-Fusion-DeFuse:01		TARGET-10-PANTSM-04A-02R.results.filtered.tsv	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-02R	RNA	EFO	SRS2416207	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-02R A61063 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61063	SRX3073861	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANTSM-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANTSM-04A-02R A61063 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4519-1./A61063.fastq	SRR5912876	@dbgap@:reads/SRP011999/SRS2416207/SRX3073861/SRR5912876/SRR5912876.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANTSM-04A-02R.fusion.vcf	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-02R	RNA	EFO	SRS2416207	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-02R A61063 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61063	SRX3073861	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANTSM-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANTSM-04A-02R A61063 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4519-1./A61063.fastq	SRR5912876	@dbgap@:reads/SRP011999/SRS2416207/SRX3073861/SRR5912876/SRR5912876.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANTSM-04A-02R.indel.vcf	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-02R	RNA	EFO	SRS2416207	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-04A-02R A61063 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61063	SRX3073861	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANTSM-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANTSM-04A-02R A61063 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4519-1./A61063.fastq	SRR5912876	@dbgap@:reads/SRP011999/SRS2416207/SRX3073861/SRR5912876/SRR5912876.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-10-PANTSM-04A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Tab:01	TARGET-10-PANTSM-04A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-09A-01R	RNA	EFO	SRS602051	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-09A-01R A32655 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32655	SRX543456	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANTSM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANTSM-09A-01R A32655 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2241-1./A32655.fastq	SRR1791033	@dbgap@:reads/SRP011999/SRS602051/SRX543456/SRR1791033/SRR1791033.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_8_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288058	@dbgap@:reads/SRP011999/SRS602051/SRX543456/SRR1288058/SRR1288058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANTSM-09A-01R.exon.quantification.txt	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-09A-01R	RNA	EFO	SRS602051	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-09A-01R A32655 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32655	SRX543456	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANTSM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANTSM-09A-01R A32655 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2241-1./A32655.fastq	SRR1791033	@dbgap@:reads/SRP011999/SRS602051/SRX543456/SRR1791033/SRR1791033.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_8_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288058	@dbgap@:reads/SRP011999/SRS602051/SRX543456/SRR1288058/SRR1288058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANTSM-09A-01R.gene.quantification.txt	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-09A-01R	RNA	EFO	SRS602051	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-09A-01R A32655 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32655	SRX543456	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANTSM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANTSM-09A-01R A32655 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2241-1./A32655.fastq	SRR1791033	@dbgap@:reads/SRP011999/SRS602051/SRX543456/SRR1791033/SRR1791033.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_8_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288058	@dbgap@:reads/SRP011999/SRS602051/SRX543456/SRR1288058/SRR1288058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANTSM-09A-01R.isoform.quantification.txt	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-09A-01R	RNA	EFO	SRS602051	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-09A-01R A32655 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32655	SRX543456	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANTSM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANTSM-09A-01R A32655 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2241-1./A32655.fastq	SRR1791033	@dbgap@:reads/SRP011999/SRS602051/SRX543456/SRR1791033/SRR1791033.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_8_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288058	@dbgap@:reads/SRP011999/SRS602051/SRX543456/SRR1288058/SRR1288058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANTSM-09A-01R.fusion.vcf	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-09A-01R	RNA	EFO	SRS602051	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-09A-01R A32655 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32655	SRX543456	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANTSM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANTSM-09A-01R A32655 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2241-1./A32655.fastq	SRR1791033	@dbgap@:reads/SRP011999/SRS602051/SRX543456/SRR1791033/SRR1791033.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_8_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288058	@dbgap@:reads/SRP011999/SRS602051/SRX543456/SRR1288058/SRR1288058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANTSM-09A-01R.indel.vcf	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-09A-01R	RNA	EFO	SRS602051	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTSM-09A-01R A32655 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32655	SRX543456	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANTSM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANTSM-09A-01R A32655 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2241-1./A32655.fastq	SRR1791033	@dbgap@:reads/SRP011999/SRS602051/SRX543456/SRR1791033/SRR1791033.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_8_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288058	@dbgap@:reads/SRP011999/SRS602051/SRX543456/SRR1288058/SRR1288058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANTSM-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANUHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUHA-09A-01R	RNA	EFO	SRS602180	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUHA-09A-01R A32730 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32730	SRX547606	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANUHA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANUHA-09A-01R A32730 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2261-1./A32730.fastq	SRR1791092	@dbgap@:reads/SRP011999/SRS602180/SRX547606/SRR1791092/SRR1791092.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_3_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292970	@dbgap@:reads/SRP011999/SRS602180/SRX547606/SRR1292970/SRR1292970.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANUHA-09A-01R.exon.quantification.txt	3			
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANUHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUHA-09A-01R	RNA	EFO	SRS602180	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUHA-09A-01R A32730 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32730	SRX547606	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANUHA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANUHA-09A-01R A32730 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2261-1./A32730.fastq	SRR1791092	@dbgap@:reads/SRP011999/SRS602180/SRX547606/SRR1791092/SRR1791092.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_3_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292970	@dbgap@:reads/SRP011999/SRS602180/SRX547606/SRR1292970/SRR1292970.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANUHA-09A-01R.gene.quantification.txt	3			
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANUHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUHA-09A-01R	RNA	EFO	SRS602180	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUHA-09A-01R A32730 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32730	SRX547606	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANUHA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANUHA-09A-01R A32730 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2261-1./A32730.fastq	SRR1791092	@dbgap@:reads/SRP011999/SRS602180/SRX547606/SRR1791092/SRR1791092.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_3_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292970	@dbgap@:reads/SRP011999/SRS602180/SRX547606/SRR1292970/SRR1292970.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANUHA-09A-01R.isoform.quantification.txt	3			
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANUHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUHA-09A-01R	RNA	EFO	SRS602180	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUHA-09A-01R A32730 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32730	SRX547606	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANUHA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANUHA-09A-01R A32730 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2261-1./A32730.fastq	SRR1791092	@dbgap@:reads/SRP011999/SRS602180/SRX547606/SRR1791092/SRR1791092.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_3_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292970	@dbgap@:reads/SRP011999/SRS602180/SRX547606/SRR1292970/SRR1292970.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANUHA-09A-01R.fusion.vcf	3			
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANUHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUHA-09A-01R	RNA	EFO	SRS602180	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUHA-09A-01R A32730 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32730	SRX547606	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANUHA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANUHA-09A-01R A32730 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2261-1./A32730.fastq	SRR1791092	@dbgap@:reads/SRP011999/SRS602180/SRX547606/SRR1791092/SRR1791092.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_3_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292970	@dbgap@:reads/SRP011999/SRS602180/SRX547606/SRR1292970/SRR1292970.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANUHA-09A-01R.indel.vcf	3			
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANUHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUHA-09A-01R	RNA	EFO	SRS602180	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUHA-09A-01R A32730 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32730	SRX547606	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANUHA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANUHA-09A-01R A32730 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2261-1./A32730.fastq	SRR1791092	@dbgap@:reads/SRP011999/SRS602180/SRX547606/SRR1791092/SRR1791092.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_3_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292970	@dbgap@:reads/SRP011999/SRS602180/SRX547606/SRR1292970/SRR1292970.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANUHA-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANUSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUSN-03A-01R	RNA	EFO	SRS602101	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUSN-03A-01R A32656 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32656	SRX543465	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANUSN-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANUSN-03A-01R A32656 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2236-1./A32656.fastq	SRR1790997	@dbgap@:reads/SRP011999/SRS602101/SRX543465/SRR1790997/SRR1790997.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_3_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288062	@dbgap@:reads/SRP011999/SRS602101/SRX543465/SRR1288062/SRR1288062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANUSN-03A-01R.exon.quantification.txt	3			
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANUSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUSN-03A-01R	RNA	EFO	SRS602101	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUSN-03A-01R A32656 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32656	SRX543465	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANUSN-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANUSN-03A-01R A32656 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2236-1./A32656.fastq	SRR1790997	@dbgap@:reads/SRP011999/SRS602101/SRX543465/SRR1790997/SRR1790997.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_3_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288062	@dbgap@:reads/SRP011999/SRS602101/SRX543465/SRR1288062/SRR1288062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANUSN-03A-01R.gene.quantification.txt	3			
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANUSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUSN-03A-01R	RNA	EFO	SRS602101	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUSN-03A-01R A32656 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32656	SRX543465	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANUSN-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANUSN-03A-01R A32656 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2236-1./A32656.fastq	SRR1790997	@dbgap@:reads/SRP011999/SRS602101/SRX543465/SRR1790997/SRR1790997.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_3_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288062	@dbgap@:reads/SRP011999/SRS602101/SRX543465/SRR1288062/SRR1288062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANUSN-03A-01R.isoform.quantification.txt	3			
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANUSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUSN-03A-01R	RNA	EFO	SRS602101	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUSN-03A-01R A32656 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32656	SRX543465	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANUSN-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANUSN-03A-01R A32656 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2236-1./A32656.fastq	SRR1790997	@dbgap@:reads/SRP011999/SRS602101/SRX543465/SRR1790997/SRR1790997.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_3_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288062	@dbgap@:reads/SRP011999/SRS602101/SRX543465/SRR1288062/SRR1288062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANUSN-03A-01R.fusion.vcf	3			
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANUSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUSN-03A-01R	RNA	EFO	SRS602101	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUSN-03A-01R A32656 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32656	SRX543465	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANUSN-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANUSN-03A-01R A32656 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2236-1./A32656.fastq	SRR1790997	@dbgap@:reads/SRP011999/SRS602101/SRX543465/SRR1790997/SRR1790997.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_3_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288062	@dbgap@:reads/SRP011999/SRS602101/SRX543465/SRR1288062/SRR1288062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANUSN-03A-01R.indel.vcf	3			
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANUSN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUSN-03A-01R	RNA	EFO	SRS602101	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUSN-03A-01R A32656 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32656	SRX543465	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANUSN-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANUSN-03A-01R A32656 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2236-1./A32656.fastq	SRR1790997	@dbgap@:reads/SRP011999/SRS602101/SRX543465/SRR1790997/SRR1790997.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_3_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288062	@dbgap@:reads/SRP011999/SRS602101/SRX543465/SRR1288062/SRR1288062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANUSN-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANUSN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUSN-04A-01R	RNA	EFO	SRS602040	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUSN-04A-01R A32657 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32657	SRX543438	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANUSN-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANUSN-04A-01R A32657 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2254-1./A32657.fastq	SRR1791086	@dbgap@:reads/SRP011999/SRS602040/SRX543438/SRR1791086/SRR1791086.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_5_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288036	@dbgap@:reads/SRP011999/SRS602040/SRX543438/SRR1288036/SRR1288036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANUSN-04A-01R.exon.quantification.txt	3			
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANUSN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUSN-04A-01R	RNA	EFO	SRS602040	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUSN-04A-01R A32657 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32657	SRX543438	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANUSN-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANUSN-04A-01R A32657 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2254-1./A32657.fastq	SRR1791086	@dbgap@:reads/SRP011999/SRS602040/SRX543438/SRR1791086/SRR1791086.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_5_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288036	@dbgap@:reads/SRP011999/SRS602040/SRX543438/SRR1288036/SRR1288036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANUSN-04A-01R.gene.quantification.txt	3			
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANUSN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUSN-04A-01R	RNA	EFO	SRS602040	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUSN-04A-01R A32657 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32657	SRX543438	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANUSN-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANUSN-04A-01R A32657 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2254-1./A32657.fastq	SRR1791086	@dbgap@:reads/SRP011999/SRS602040/SRX543438/SRR1791086/SRR1791086.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_5_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288036	@dbgap@:reads/SRP011999/SRS602040/SRX543438/SRR1288036/SRR1288036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANUSN-04A-01R.isoform.quantification.txt	3			
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANUSN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUSN-04A-01R	RNA	EFO	SRS602040	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUSN-04A-01R A32657 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32657	SRX543438	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANUSN-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANUSN-04A-01R A32657 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2254-1./A32657.fastq	SRR1791086	@dbgap@:reads/SRP011999/SRS602040/SRX543438/SRR1791086/SRR1791086.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_5_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288036	@dbgap@:reads/SRP011999/SRS602040/SRX543438/SRR1288036/SRR1288036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANUSN-04A-01R.fusion.vcf	3			
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANUSN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUSN-04A-01R	RNA	EFO	SRS602040	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUSN-04A-01R A32657 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32657	SRX543438	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANUSN-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANUSN-04A-01R A32657 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2254-1./A32657.fastq	SRR1791086	@dbgap@:reads/SRP011999/SRS602040/SRX543438/SRR1791086/SRR1791086.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_5_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288036	@dbgap@:reads/SRP011999/SRS602040/SRX543438/SRR1288036/SRR1288036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANUSN-04A-01R.indel.vcf	3			
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANUSN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUSN-04A-01R	RNA	EFO	SRS602040	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUSN-04A-01R A32657 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32657	SRX543438	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANUSN-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANUSN-04A-01R A32657 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2254-1./A32657.fastq	SRR1791086	@dbgap@:reads/SRP011999/SRS602040/SRX543438/SRR1791086/SRR1791086.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_5_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288036	@dbgap@:reads/SRP011999/SRS602040/SRX543438/SRR1288036/SRR1288036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANUSN-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANUUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUUF-09A-02R	RNA	EFO	SRS602228	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUUF-09A-02R A33615 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33615	SRX547657	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANUUF-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANUUF-09A-02R A33615 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2182-1./A33615.fastq	SRR1791012	@dbgap@:reads/SRP011999/SRS602228/SRX547657/SRR1791012/SRR1791012.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_6_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293048	@dbgap@:reads/SRP011999/SRS602228/SRX547657/SRR1293048/SRR1293048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANUUF-09A-02R.exon.quantification.txt	3			
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANUUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUUF-09A-02R	RNA	EFO	SRS602228	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUUF-09A-02R A33615 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33615	SRX547657	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANUUF-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANUUF-09A-02R A33615 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2182-1./A33615.fastq	SRR1791012	@dbgap@:reads/SRP011999/SRS602228/SRX547657/SRR1791012/SRR1791012.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_6_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293048	@dbgap@:reads/SRP011999/SRS602228/SRX547657/SRR1293048/SRR1293048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANUUF-09A-02R.gene.quantification.txt	3			
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANUUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUUF-09A-02R	RNA	EFO	SRS602228	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUUF-09A-02R A33615 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33615	SRX547657	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANUUF-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANUUF-09A-02R A33615 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2182-1./A33615.fastq	SRR1791012	@dbgap@:reads/SRP011999/SRS602228/SRX547657/SRR1791012/SRR1791012.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_6_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293048	@dbgap@:reads/SRP011999/SRS602228/SRX547657/SRR1293048/SRR1293048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANUUF-09A-02R.isoform.quantification.txt	3			
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANUUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUUF-09A-02R	RNA	EFO	SRS602228	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUUF-09A-02R A33615 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33615	SRX547657	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANUUF-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANUUF-09A-02R A33615 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2182-1./A33615.fastq	SRR1791012	@dbgap@:reads/SRP011999/SRS602228/SRX547657/SRR1791012/SRR1791012.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_6_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293048	@dbgap@:reads/SRP011999/SRS602228/SRX547657/SRR1293048/SRR1293048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANUUF-09A-02R.fusion.vcf	3			
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANUUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUUF-09A-02R	RNA	EFO	SRS602228	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUUF-09A-02R A33615 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33615	SRX547657	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANUUF-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANUUF-09A-02R A33615 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2182-1./A33615.fastq	SRR1791012	@dbgap@:reads/SRP011999/SRS602228/SRX547657/SRR1791012/SRR1791012.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_6_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293048	@dbgap@:reads/SRP011999/SRS602228/SRX547657/SRR1293048/SRR1293048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANUUF-09A-02R.indel.vcf	3			
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANUUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUUF-09A-02R	RNA	EFO	SRS602228	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANUUF-09A-02R A33615 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33615	SRX547657	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANUUF-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANUUF-09A-02R A33615 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2182-1./A33615.fastq	SRR1791012	@dbgap@:reads/SRP011999/SRS602228/SRX547657/SRR1791012/SRR1791012.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_6_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293048	@dbgap@:reads/SRP011999/SRS602228/SRX547657/SRR1293048/SRR1293048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANUUF-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANWFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWFB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWFB-09A-01R	RNA	EFO	SRS602140	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWFB-09A-01R A32726 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32726	SRX547624	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWFB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANWFB-09A-01R A32726 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2290-1..1/A32726.fastq	SRR1791044	@dbgap@:reads/SRP011999/SRS602140/SRX547624/SRR1791044/SRR1791044.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_1_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293015	@dbgap@:reads/SRP011999/SRS602140/SRX547624/SRR1293015/SRR1293015.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANWFB-09A-01R.exon.quantification.txt	3			
TARGET-10-PANWFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWFB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWFB-09A-01R	RNA	EFO	SRS602140	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWFB-09A-01R A32726 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32726	SRX547624	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWFB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANWFB-09A-01R A32726 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2290-1..1/A32726.fastq	SRR1791044	@dbgap@:reads/SRP011999/SRS602140/SRX547624/SRR1791044/SRR1791044.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_1_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293015	@dbgap@:reads/SRP011999/SRS602140/SRX547624/SRR1293015/SRR1293015.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANWFB-09A-01R.gene.quantification.txt	3			
TARGET-10-PANWFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWFB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWFB-09A-01R	RNA	EFO	SRS602140	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWFB-09A-01R A32726 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32726	SRX547624	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWFB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANWFB-09A-01R A32726 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2290-1..1/A32726.fastq	SRR1791044	@dbgap@:reads/SRP011999/SRS602140/SRX547624/SRR1791044/SRR1791044.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_1_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293015	@dbgap@:reads/SRP011999/SRS602140/SRX547624/SRR1293015/SRR1293015.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANWFB-09A-01R.isoform.quantification.txt	3			
TARGET-10-PANWFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWFB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWFB-09A-01R	RNA	EFO	SRS602140	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWFB-09A-01R A32726 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32726	SRX547624	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWFB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANWFB-09A-01R A32726 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2290-1..1/A32726.fastq	SRR1791044	@dbgap@:reads/SRP011999/SRS602140/SRX547624/SRR1791044/SRR1791044.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_1_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293015	@dbgap@:reads/SRP011999/SRS602140/SRX547624/SRR1293015/SRR1293015.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANWFB-09A-01R.fusion.vcf	3			
TARGET-10-PANWFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWFB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWFB-09A-01R	RNA	EFO	SRS602140	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWFB-09A-01R A32726 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32726	SRX547624	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWFB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANWFB-09A-01R A32726 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2290-1..1/A32726.fastq	SRR1791044	@dbgap@:reads/SRP011999/SRS602140/SRX547624/SRR1791044/SRR1791044.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_1_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293015	@dbgap@:reads/SRP011999/SRS602140/SRX547624/SRR1293015/SRR1293015.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANWFB-09A-01R.indel.vcf	3			
TARGET-10-PANWFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWFB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWFB-09A-01R	RNA	EFO	SRS602140	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWFB-09A-01R A32726 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32726	SRX547624	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWFB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANWFB-09A-01R A32726 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2290-1..1/A32726.fastq	SRR1791044	@dbgap@:reads/SRP011999/SRS602140/SRX547624/SRR1791044/SRR1791044.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_1_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293015	@dbgap@:reads/SRP011999/SRS602140/SRX547624/SRR1293015/SRR1293015.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANWFB-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHJ-09A-01R	RNA	EFO	SRS602050	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHJ-09A-01R A32659 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32659	SRX543416	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWHJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANWHJ-09A-01R A32659 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2237-1./A32659.fastq	SRR1791111	@dbgap@:reads/SRP011999/SRS602050/SRX543416/SRR1791111/SRR1791111.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_4_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288085	@dbgap@:reads/SRP011999/SRS602050/SRX543416/SRR1288085/SRR1288085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANWHJ-09A-01R.exon.quantification.txt	3			
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHJ-09A-01R	RNA	EFO	SRS602050	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHJ-09A-01R A32659 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32659	SRX543416	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWHJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANWHJ-09A-01R A32659 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2237-1./A32659.fastq	SRR1791111	@dbgap@:reads/SRP011999/SRS602050/SRX543416/SRR1791111/SRR1791111.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_4_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288085	@dbgap@:reads/SRP011999/SRS602050/SRX543416/SRR1288085/SRR1288085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANWHJ-09A-01R.gene.quantification.txt	3			
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHJ-09A-01R	RNA	EFO	SRS602050	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHJ-09A-01R A32659 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32659	SRX543416	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWHJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANWHJ-09A-01R A32659 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2237-1./A32659.fastq	SRR1791111	@dbgap@:reads/SRP011999/SRS602050/SRX543416/SRR1791111/SRR1791111.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_4_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288085	@dbgap@:reads/SRP011999/SRS602050/SRX543416/SRR1288085/SRR1288085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANWHJ-09A-01R.isoform.quantification.txt	3			
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHJ-09A-01R	RNA	EFO	SRS602050	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHJ-09A-01R A32659 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32659	SRX543416	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWHJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANWHJ-09A-01R A32659 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2237-1./A32659.fastq	SRR1791111	@dbgap@:reads/SRP011999/SRS602050/SRX543416/SRR1791111/SRR1791111.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_4_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288085	@dbgap@:reads/SRP011999/SRS602050/SRX543416/SRR1288085/SRR1288085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANWHJ-09A-01R.fusion.vcf	3			
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHJ-09A-01R	RNA	EFO	SRS602050	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHJ-09A-01R A32659 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32659	SRX543416	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWHJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANWHJ-09A-01R A32659 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2237-1./A32659.fastq	SRR1791111	@dbgap@:reads/SRP011999/SRS602050/SRX543416/SRR1791111/SRR1791111.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_4_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288085	@dbgap@:reads/SRP011999/SRS602050/SRX543416/SRR1288085/SRR1288085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANWHJ-09A-01R.indel.vcf	3			
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHJ-09A-01R	RNA	EFO	SRS602050	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHJ-09A-01R A32659 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32659	SRX543416	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWHJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANWHJ-09A-01R A32659 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2237-1./A32659.fastq	SRR1791111	@dbgap@:reads/SRP011999/SRS602050/SRX543416/SRR1791111/SRR1791111.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_4_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288085	@dbgap@:reads/SRP011999/SRS602050/SRX543416/SRR1288085/SRR1288085.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANWHJ-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-01R	RNA	EFO	SRS602155	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-01R A32722 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32722	SRX547567	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWHW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANWHW-09A-01R A32722 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2266-1./A32722.fastq	SRR1791046	@dbgap@:reads/SRP011999/SRS602155/SRX547567/SRR1791046/SRR1791046.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 35000, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_8_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292962	@dbgap@:reads/SRP011999/SRS602155/SRX547567/SRR1292962/SRR1292962.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANWHW-09A-01R.exon.quantification.txt	3			
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-01R	RNA	EFO	SRS602155	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-01R A32722 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32722	SRX547567	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWHW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANWHW-09A-01R A32722 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2266-1./A32722.fastq	SRR1791046	@dbgap@:reads/SRP011999/SRS602155/SRX547567/SRR1791046/SRR1791046.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 35000, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_8_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292962	@dbgap@:reads/SRP011999/SRS602155/SRX547567/SRR1292962/SRR1292962.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANWHW-09A-01R.gene.quantification.txt	3			
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-01R	RNA	EFO	SRS602155	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-01R A32722 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32722	SRX547567	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWHW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANWHW-09A-01R A32722 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2266-1./A32722.fastq	SRR1791046	@dbgap@:reads/SRP011999/SRS602155/SRX547567/SRR1791046/SRR1791046.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 35000, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_8_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292962	@dbgap@:reads/SRP011999/SRS602155/SRX547567/SRR1292962/SRR1292962.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANWHW-09A-01R.isoform.quantification.txt	3			
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-01R	RNA	EFO	SRS602155	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-01R A32722 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32722	SRX547567	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWHW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANWHW-09A-01R A32722 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2266-1./A32722.fastq	SRR1791046	@dbgap@:reads/SRP011999/SRS602155/SRX547567/SRR1791046/SRR1791046.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 35000, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_8_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292962	@dbgap@:reads/SRP011999/SRS602155/SRX547567/SRR1292962/SRR1292962.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANWHW-09A-01R.fusion.vcf	3			
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-01R	RNA	EFO	SRS602155	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-01R A32722 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32722	SRX547567	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWHW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANWHW-09A-01R A32722 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2266-1./A32722.fastq	SRR1791046	@dbgap@:reads/SRP011999/SRS602155/SRX547567/SRR1791046/SRR1791046.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 35000, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_8_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292962	@dbgap@:reads/SRP011999/SRS602155/SRX547567/SRR1292962/SRR1292962.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANWHW-09A-01R.indel.vcf	3			
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-01R	RNA	EFO	SRS602155	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-01R A32722 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32722	SRX547567	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWHW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANWHW-09A-01R A32722 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2266-1./A32722.fastq	SRR1791046	@dbgap@:reads/SRP011999/SRS602155/SRX547567/SRR1791046/SRR1791046.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 35000, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_8_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292962	@dbgap@:reads/SRP011999/SRS602155/SRX547567/SRR1292962/SRR1292962.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANWHW-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-02R	RNA	EFO	SRS2416206	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-02R A61072 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61072	SRX3073862	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWHW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANWHW-09A-02R A61072 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4507-1./A61072.fastq	SRR5912864	@dbgap@:reads/SRP011999/SRS2416206/SRX3073862/SRR5912864/SRR5912864.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANWHW-09A-02R.exon.quantification.txt	3			
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-02R	RNA	EFO	SRS2416206	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-02R A61072 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61072	SRX3073862	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWHW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANWHW-09A-02R A61072 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4507-1./A61072.fastq	SRR5912864	@dbgap@:reads/SRP011999/SRS2416206/SRX3073862/SRR5912864/SRR5912864.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANWHW-09A-02R.gene.quantification.txt	3			
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-02R	RNA	EFO	SRS2416206	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-02R A61072 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61072	SRX3073862	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWHW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANWHW-09A-02R A61072 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4507-1./A61072.fastq	SRR5912864	@dbgap@:reads/SRP011999/SRS2416206/SRX3073862/SRR5912864/SRR5912864.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANWHW-09A-02R.isoform.quantification.txt	3			
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-02R	RNA	EFO	SRS2416206	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-02R A61072 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61072	SRX3073862	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWHW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANWHW-09A-02R A61072 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4507-1./A61072.fastq	SRR5912864	@dbgap@:reads/SRP011999/SRS2416206/SRX3073862/SRR5912864/SRR5912864.sra	1								bcgsc.ca:Protocol:mRNAseq-Fusion-DeFuse:01		TARGET-10-PANWHW-09A-02R.results.filtered.tsv	3			
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-02R	RNA	EFO	SRS2416206	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-02R A61072 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61072	SRX3073862	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWHW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANWHW-09A-02R A61072 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4507-1./A61072.fastq	SRR5912864	@dbgap@:reads/SRP011999/SRS2416206/SRX3073862/SRR5912864/SRR5912864.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANWHW-09A-02R.fusion.vcf	3			
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-02R	RNA	EFO	SRS2416206	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-02R A61072 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61072	SRX3073862	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWHW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANWHW-09A-02R A61072 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4507-1./A61072.fastq	SRR5912864	@dbgap@:reads/SRP011999/SRS2416206/SRX3073862/SRR5912864/SRR5912864.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANWHW-09A-02R.indel.vcf	3			
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-02R	RNA	EFO	SRS2416206	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWHW-09A-02R A61072 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61072	SRX3073862	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWHW-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PANWHW-09A-02R A61072 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4507-1./A61072.fastq	SRR5912864	@dbgap@:reads/SRP011999/SRS2416206/SRX3073862/SRR5912864/SRR5912864.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-10-PANWHW-09A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Tab:01	TARGET-10-PANWHW-09A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWVW-09A-01R	RNA	EFO	SRS602186	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWVW-09A-01R A32733 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32733	SRX547634	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWVW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANWVW-09A-01R A32733 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2279-1./A32733.fastq	SRR1791099	@dbgap@:reads/SRP011999/SRS602186/SRX547634/SRR1791099/SRR1791099.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_6_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292974	@dbgap@:reads/SRP011999/SRS602186/SRX547634/SRR1292974/SRR1292974.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANWVW-09A-01R.exon.quantification.txt	3			
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWVW-09A-01R	RNA	EFO	SRS602186	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWVW-09A-01R A32733 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32733	SRX547634	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWVW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANWVW-09A-01R A32733 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2279-1./A32733.fastq	SRR1791099	@dbgap@:reads/SRP011999/SRS602186/SRX547634/SRR1791099/SRR1791099.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_6_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292974	@dbgap@:reads/SRP011999/SRS602186/SRX547634/SRR1292974/SRR1292974.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANWVW-09A-01R.gene.quantification.txt	3			
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWVW-09A-01R	RNA	EFO	SRS602186	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWVW-09A-01R A32733 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32733	SRX547634	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWVW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANWVW-09A-01R A32733 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2279-1./A32733.fastq	SRR1791099	@dbgap@:reads/SRP011999/SRS602186/SRX547634/SRR1791099/SRR1791099.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_6_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292974	@dbgap@:reads/SRP011999/SRS602186/SRX547634/SRR1292974/SRR1292974.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANWVW-09A-01R.isoform.quantification.txt	3			
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWVW-09A-01R	RNA	EFO	SRS602186	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWVW-09A-01R A32733 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32733	SRX547634	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWVW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANWVW-09A-01R A32733 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2279-1./A32733.fastq	SRR1791099	@dbgap@:reads/SRP011999/SRS602186/SRX547634/SRR1791099/SRR1791099.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_6_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292974	@dbgap@:reads/SRP011999/SRS602186/SRX547634/SRR1292974/SRR1292974.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANWVW-09A-01R.fusion.vcf	3			
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWVW-09A-01R	RNA	EFO	SRS602186	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWVW-09A-01R A32733 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32733	SRX547634	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWVW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANWVW-09A-01R A32733 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2279-1./A32733.fastq	SRR1791099	@dbgap@:reads/SRP011999/SRS602186/SRX547634/SRR1791099/SRR1791099.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_6_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292974	@dbgap@:reads/SRP011999/SRS602186/SRX547634/SRR1292974/SRR1292974.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANWVW-09A-01R.indel.vcf	3			
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWVW-09A-01R	RNA	EFO	SRS602186	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWVW-09A-01R A32733 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32733	SRX547634	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWVW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANWVW-09A-01R A32733 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2279-1./A32733.fastq	SRR1791099	@dbgap@:reads/SRP011999/SRS602186/SRX547634/SRR1791099/SRR1791099.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_6_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292974	@dbgap@:reads/SRP011999/SRS602186/SRX547634/SRR1292974/SRR1292974.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANWVW-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWYH-09A-02R	RNA	EFO	SRS602205	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWYH-09A-02R A33614 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	202		A33614	SRX547672	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWYH-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-10-PANWYH-09A-02R A33614 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2175-1..1/A33614.fastq	SRR1790989	@dbgap@:reads/SRP011999/SRS602205/SRX547672/SRR1790989/SRR1790989.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33614_2_lanes_dupsFlagged.bam	SRR1293045	@dbgap@:reads/SRP011999/SRS602205/SRX547672/SRR1293045/SRR1293045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANWYH-09A-02R.exon.quantification.txt	3			
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWYH-09A-02R	RNA	EFO	SRS602205	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWYH-09A-02R A33614 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	202		A33614	SRX547672	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWYH-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-10-PANWYH-09A-02R A33614 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2175-1..1/A33614.fastq	SRR1790989	@dbgap@:reads/SRP011999/SRS602205/SRX547672/SRR1790989/SRR1790989.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33614_2_lanes_dupsFlagged.bam	SRR1293045	@dbgap@:reads/SRP011999/SRS602205/SRX547672/SRR1293045/SRR1293045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANWYH-09A-02R.gene.quantification.txt	3			
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWYH-09A-02R	RNA	EFO	SRS602205	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWYH-09A-02R A33614 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	202		A33614	SRX547672	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWYH-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-10-PANWYH-09A-02R A33614 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2175-1..1/A33614.fastq	SRR1790989	@dbgap@:reads/SRP011999/SRS602205/SRX547672/SRR1790989/SRR1790989.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33614_2_lanes_dupsFlagged.bam	SRR1293045	@dbgap@:reads/SRP011999/SRS602205/SRX547672/SRR1293045/SRR1293045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANWYH-09A-02R.isoform.quantification.txt	3			
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWYH-09A-02R	RNA	EFO	SRS602205	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWYH-09A-02R A33614 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	202		A33614	SRX547672	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWYH-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-10-PANWYH-09A-02R A33614 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2175-1..1/A33614.fastq	SRR1790989	@dbgap@:reads/SRP011999/SRS602205/SRX547672/SRR1790989/SRR1790989.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33614_2_lanes_dupsFlagged.bam	SRR1293045	@dbgap@:reads/SRP011999/SRS602205/SRX547672/SRR1293045/SRR1293045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANWYH-09A-02R.fusion.vcf	3			
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWYH-09A-02R	RNA	EFO	SRS602205	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWYH-09A-02R A33614 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	202		A33614	SRX547672	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWYH-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-10-PANWYH-09A-02R A33614 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2175-1..1/A33614.fastq	SRR1790989	@dbgap@:reads/SRP011999/SRS602205/SRX547672/SRR1790989/SRR1790989.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33614_2_lanes_dupsFlagged.bam	SRR1293045	@dbgap@:reads/SRP011999/SRS602205/SRX547672/SRR1293045/SRR1293045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANWYH-09A-02R.indel.vcf	3			
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWYH-09A-02R	RNA	EFO	SRS602205	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWYH-09A-02R A33614 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	202		A33614	SRX547672	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWYH-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-12-17	TARGET-10-PANWYH-09A-02R A33614 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2175-1..1/A33614.fastq	SRR1790989	@dbgap@:reads/SRP011999/SRS602205/SRX547672/SRR1790989/SRR1790989.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33614_2_lanes_dupsFlagged.bam	SRR1293045	@dbgap@:reads/SRP011999/SRS602205/SRX547672/SRR1293045/SRR1293045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANWYH-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWYH-09A-02R	RNA	EFO	SRS602205	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWYH-09A-02R A33614 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	202		A33614	SRX547672	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWYH-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANWYH-09A-02R A33614 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2175-1./A33614.fastq	SRR1791028	@dbgap@:reads/SRP011999/SRS602205/SRX547672/SRR1791028/SRR1791028.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33614_2_lanes_dupsFlagged.bam	SRR1293045	@dbgap@:reads/SRP011999/SRS602205/SRX547672/SRR1293045/SRR1293045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANWYH-09A-02R.exon.quantification.txt	3			
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWYH-09A-02R	RNA	EFO	SRS602205	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWYH-09A-02R A33614 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	202		A33614	SRX547672	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWYH-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANWYH-09A-02R A33614 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2175-1./A33614.fastq	SRR1791028	@dbgap@:reads/SRP011999/SRS602205/SRX547672/SRR1791028/SRR1791028.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33614_2_lanes_dupsFlagged.bam	SRR1293045	@dbgap@:reads/SRP011999/SRS602205/SRX547672/SRR1293045/SRR1293045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANWYH-09A-02R.gene.quantification.txt	3			
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWYH-09A-02R	RNA	EFO	SRS602205	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWYH-09A-02R A33614 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	202		A33614	SRX547672	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWYH-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANWYH-09A-02R A33614 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2175-1./A33614.fastq	SRR1791028	@dbgap@:reads/SRP011999/SRS602205/SRX547672/SRR1791028/SRR1791028.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33614_2_lanes_dupsFlagged.bam	SRR1293045	@dbgap@:reads/SRP011999/SRS602205/SRX547672/SRR1293045/SRR1293045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANWYH-09A-02R.isoform.quantification.txt	3			
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWYH-09A-02R	RNA	EFO	SRS602205	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWYH-09A-02R A33614 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	202		A33614	SRX547672	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWYH-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANWYH-09A-02R A33614 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2175-1./A33614.fastq	SRR1791028	@dbgap@:reads/SRP011999/SRS602205/SRX547672/SRR1791028/SRR1791028.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33614_2_lanes_dupsFlagged.bam	SRR1293045	@dbgap@:reads/SRP011999/SRS602205/SRX547672/SRR1293045/SRR1293045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANWYH-09A-02R.fusion.vcf	3			
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWYH-09A-02R	RNA	EFO	SRS602205	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWYH-09A-02R A33614 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	202		A33614	SRX547672	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWYH-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANWYH-09A-02R A33614 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2175-1./A33614.fastq	SRR1791028	@dbgap@:reads/SRP011999/SRS602205/SRX547672/SRR1791028/SRR1791028.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33614_2_lanes_dupsFlagged.bam	SRR1293045	@dbgap@:reads/SRP011999/SRS602205/SRX547672/SRR1293045/SRR1293045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANWYH-09A-02R.indel.vcf	3			
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWYH-09A-02R	RNA	EFO	SRS602205	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWYH-09A-02R A33614 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	202		A33614	SRX547672	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANWYH-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANWYH-09A-02R A33614 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2175-1./A33614.fastq	SRR1791028	@dbgap@:reads/SRP011999/SRS602205/SRX547672/SRR1791028/SRR1791028.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33614_2_lanes_dupsFlagged.bam	SRR1293045	@dbgap@:reads/SRP011999/SRS602205/SRX547672/SRR1293045/SRR1293045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANWYH-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANXDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXDB-03A-01R	RNA	EFO	SRS602166	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXDB-03A-01R A32724 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32724	SRX547584	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANXDB-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANXDB-03A-01R A32724 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2281-1./A32724.fastq	SRR1790986	@dbgap@:reads/SRP011999/SRS602166/SRX547584/SRR1790986/SRR1790986.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 35000, exon-intron ratio < 1, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_8_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292959	@dbgap@:reads/SRP011999/SRS602166/SRX547584/SRR1292959/SRR1292959.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANXDB-03A-01R.exon.quantification.txt	3			
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANXDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXDB-03A-01R	RNA	EFO	SRS602166	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXDB-03A-01R A32724 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32724	SRX547584	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANXDB-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANXDB-03A-01R A32724 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2281-1./A32724.fastq	SRR1790986	@dbgap@:reads/SRP011999/SRS602166/SRX547584/SRR1790986/SRR1790986.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 35000, exon-intron ratio < 1, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_8_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292959	@dbgap@:reads/SRP011999/SRS602166/SRX547584/SRR1292959/SRR1292959.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANXDB-03A-01R.gene.quantification.txt	3			
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANXDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXDB-03A-01R	RNA	EFO	SRS602166	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXDB-03A-01R A32724 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32724	SRX547584	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANXDB-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANXDB-03A-01R A32724 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2281-1./A32724.fastq	SRR1790986	@dbgap@:reads/SRP011999/SRS602166/SRX547584/SRR1790986/SRR1790986.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 35000, exon-intron ratio < 1, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_8_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292959	@dbgap@:reads/SRP011999/SRS602166/SRX547584/SRR1292959/SRR1292959.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANXDB-03A-01R.isoform.quantification.txt	3			
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANXDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXDB-03A-01R	RNA	EFO	SRS602166	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXDB-03A-01R A32724 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32724	SRX547584	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANXDB-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANXDB-03A-01R A32724 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2281-1./A32724.fastq	SRR1790986	@dbgap@:reads/SRP011999/SRS602166/SRX547584/SRR1790986/SRR1790986.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 35000, exon-intron ratio < 1, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_8_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292959	@dbgap@:reads/SRP011999/SRS602166/SRX547584/SRR1292959/SRR1292959.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANXDB-03A-01R.fusion.vcf	3			
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANXDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXDB-03A-01R	RNA	EFO	SRS602166	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXDB-03A-01R A32724 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32724	SRX547584	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANXDB-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANXDB-03A-01R A32724 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2281-1./A32724.fastq	SRR1790986	@dbgap@:reads/SRP011999/SRS602166/SRX547584/SRR1790986/SRR1790986.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 35000, exon-intron ratio < 1, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_8_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292959	@dbgap@:reads/SRP011999/SRS602166/SRX547584/SRR1292959/SRR1292959.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANXDB-03A-01R.indel.vcf	3			
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANXDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXDB-03A-01R	RNA	EFO	SRS602166	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXDB-03A-01R A32724 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32724	SRX547584	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANXDB-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANXDB-03A-01R A32724 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2281-1./A32724.fastq	SRR1790986	@dbgap@:reads/SRP011999/SRS602166/SRX547584/SRR1790986/SRR1790986.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 35000, exon-intron ratio < 1, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_8_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292959	@dbgap@:reads/SRP011999/SRS602166/SRX547584/SRR1292959/SRR1292959.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANXDB-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANXDR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXDR-09A-01R	RNA	EFO	SRS602161	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXDR-09A-01R A32729 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32729	SRX547635	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANXDR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANXDR-09A-01R A32729 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2275-1./A32729.fastq	SRR1790999	@dbgap@:reads/SRP011999/SRS602161/SRX547635/SRR1790999/SRR1790999.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_2_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293005	@dbgap@:reads/SRP011999/SRS602161/SRX547635/SRR1293005/SRR1293005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANXDR-09A-01R.exon.quantification.txt	3			
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANXDR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXDR-09A-01R	RNA	EFO	SRS602161	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXDR-09A-01R A32729 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32729	SRX547635	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANXDR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANXDR-09A-01R A32729 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2275-1./A32729.fastq	SRR1790999	@dbgap@:reads/SRP011999/SRS602161/SRX547635/SRR1790999/SRR1790999.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_2_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293005	@dbgap@:reads/SRP011999/SRS602161/SRX547635/SRR1293005/SRR1293005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANXDR-09A-01R.gene.quantification.txt	3			
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANXDR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXDR-09A-01R	RNA	EFO	SRS602161	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXDR-09A-01R A32729 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32729	SRX547635	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANXDR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANXDR-09A-01R A32729 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2275-1./A32729.fastq	SRR1790999	@dbgap@:reads/SRP011999/SRS602161/SRX547635/SRR1790999/SRR1790999.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_2_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293005	@dbgap@:reads/SRP011999/SRS602161/SRX547635/SRR1293005/SRR1293005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANXDR-09A-01R.isoform.quantification.txt	3			
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANXDR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXDR-09A-01R	RNA	EFO	SRS602161	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXDR-09A-01R A32729 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32729	SRX547635	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANXDR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANXDR-09A-01R A32729 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2275-1./A32729.fastq	SRR1790999	@dbgap@:reads/SRP011999/SRS602161/SRX547635/SRR1790999/SRR1790999.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_2_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293005	@dbgap@:reads/SRP011999/SRS602161/SRX547635/SRR1293005/SRR1293005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANXDR-09A-01R.fusion.vcf	3			
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANXDR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXDR-09A-01R	RNA	EFO	SRS602161	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXDR-09A-01R A32729 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32729	SRX547635	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANXDR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANXDR-09A-01R A32729 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2275-1./A32729.fastq	SRR1790999	@dbgap@:reads/SRP011999/SRS602161/SRX547635/SRR1790999/SRR1790999.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_2_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293005	@dbgap@:reads/SRP011999/SRS602161/SRX547635/SRR1293005/SRR1293005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANXDR-09A-01R.indel.vcf	3			
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANXDR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXDR-09A-01R	RNA	EFO	SRS602161	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXDR-09A-01R A32729 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32729	SRX547635	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANXDR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANXDR-09A-01R A32729 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2275-1./A32729.fastq	SRR1790999	@dbgap@:reads/SRP011999/SRS602161/SRX547635/SRR1790999/SRR1790999.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_2_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293005	@dbgap@:reads/SRP011999/SRS602161/SRX547635/SRR1293005/SRR1293005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANXDR-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANXPE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXPE-04A-01R	RNA	EFO	SRS602068	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXPE-04A-01R A32660 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32660	SRX543446	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANXPE-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANXPE-04A-01R A32660 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2234-1./A32660.fastq	SRR1791047	@dbgap@:reads/SRP011999/SRS602068/SRX543446/SRR1791047/SRR1791047.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_1_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288033	@dbgap@:reads/SRP011999/SRS602068/SRX543446/SRR1288033/SRR1288033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANXPE-04A-01R.exon.quantification.txt	3			
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANXPE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXPE-04A-01R	RNA	EFO	SRS602068	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXPE-04A-01R A32660 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32660	SRX543446	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANXPE-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANXPE-04A-01R A32660 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2234-1./A32660.fastq	SRR1791047	@dbgap@:reads/SRP011999/SRS602068/SRX543446/SRR1791047/SRR1791047.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_1_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288033	@dbgap@:reads/SRP011999/SRS602068/SRX543446/SRR1288033/SRR1288033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANXPE-04A-01R.gene.quantification.txt	3			
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANXPE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXPE-04A-01R	RNA	EFO	SRS602068	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXPE-04A-01R A32660 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32660	SRX543446	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANXPE-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANXPE-04A-01R A32660 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2234-1./A32660.fastq	SRR1791047	@dbgap@:reads/SRP011999/SRS602068/SRX543446/SRR1791047/SRR1791047.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_1_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288033	@dbgap@:reads/SRP011999/SRS602068/SRX543446/SRR1288033/SRR1288033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANXPE-04A-01R.isoform.quantification.txt	3			
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANXPE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXPE-04A-01R	RNA	EFO	SRS602068	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXPE-04A-01R A32660 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32660	SRX543446	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANXPE-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANXPE-04A-01R A32660 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2234-1./A32660.fastq	SRR1791047	@dbgap@:reads/SRP011999/SRS602068/SRX543446/SRR1791047/SRR1791047.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_1_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288033	@dbgap@:reads/SRP011999/SRS602068/SRX543446/SRR1288033/SRR1288033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANXPE-04A-01R.fusion.vcf	3			
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANXPE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXPE-04A-01R	RNA	EFO	SRS602068	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXPE-04A-01R A32660 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32660	SRX543446	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANXPE-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANXPE-04A-01R A32660 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2234-1./A32660.fastq	SRR1791047	@dbgap@:reads/SRP011999/SRS602068/SRX543446/SRR1791047/SRR1791047.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_1_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288033	@dbgap@:reads/SRP011999/SRS602068/SRX543446/SRR1288033/SRR1288033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANXPE-04A-01R.indel.vcf	3			
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANXPE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXPE-04A-01R	RNA	EFO	SRS602068	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANXPE-04A-01R A32660 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32660	SRX543446	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANXPE-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANXPE-04A-01R A32660 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2234-1./A32660.fastq	SRR1791047	@dbgap@:reads/SRP011999/SRS602068/SRX543446/SRR1791047/SRR1791047.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_1_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288033	@dbgap@:reads/SRP011999/SRS602068/SRX543446/SRR1288033/SRR1288033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANXPE-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYEJ-09A-01R	RNA	EFO	SRS602149	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYEJ-09A-01R A32734 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32734	SRX547595	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYEJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANYEJ-09A-01R A32734 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2265-1./A32734.fastq	SRR1791100	@dbgap@:reads/SRP011999/SRS602149/SRX547595/SRR1791100/SRR1791100.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 35000, exon-intron ratio < 1, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_7_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293007	@dbgap@:reads/SRP011999/SRS602149/SRX547595/SRR1293007/SRR1293007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANYEJ-09A-01R.exon.quantification.txt	3			
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYEJ-09A-01R	RNA	EFO	SRS602149	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYEJ-09A-01R A32734 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32734	SRX547595	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYEJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANYEJ-09A-01R A32734 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2265-1./A32734.fastq	SRR1791100	@dbgap@:reads/SRP011999/SRS602149/SRX547595/SRR1791100/SRR1791100.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 35000, exon-intron ratio < 1, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_7_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293007	@dbgap@:reads/SRP011999/SRS602149/SRX547595/SRR1293007/SRR1293007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANYEJ-09A-01R.gene.quantification.txt	3			
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYEJ-09A-01R	RNA	EFO	SRS602149	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYEJ-09A-01R A32734 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32734	SRX547595	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYEJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANYEJ-09A-01R A32734 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2265-1./A32734.fastq	SRR1791100	@dbgap@:reads/SRP011999/SRS602149/SRX547595/SRR1791100/SRR1791100.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 35000, exon-intron ratio < 1, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_7_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293007	@dbgap@:reads/SRP011999/SRS602149/SRX547595/SRR1293007/SRR1293007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANYEJ-09A-01R.isoform.quantification.txt	3			
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYEJ-09A-01R	RNA	EFO	SRS602149	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYEJ-09A-01R A32734 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32734	SRX547595	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYEJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANYEJ-09A-01R A32734 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2265-1./A32734.fastq	SRR1791100	@dbgap@:reads/SRP011999/SRS602149/SRX547595/SRR1791100/SRR1791100.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 35000, exon-intron ratio < 1, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_7_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293007	@dbgap@:reads/SRP011999/SRS602149/SRX547595/SRR1293007/SRR1293007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANYEJ-09A-01R.fusion.vcf	3			
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYEJ-09A-01R	RNA	EFO	SRS602149	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYEJ-09A-01R A32734 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32734	SRX547595	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYEJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANYEJ-09A-01R A32734 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2265-1./A32734.fastq	SRR1791100	@dbgap@:reads/SRP011999/SRS602149/SRX547595/SRR1791100/SRR1791100.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 35000, exon-intron ratio < 1, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_7_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293007	@dbgap@:reads/SRP011999/SRS602149/SRX547595/SRR1293007/SRR1293007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANYEJ-09A-01R.indel.vcf	3			
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYEJ-09A-01R	RNA	EFO	SRS602149	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYEJ-09A-01R A32734 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32734	SRX547595	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYEJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANYEJ-09A-01R A32734 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2265-1./A32734.fastq	SRR1791100	@dbgap@:reads/SRP011999/SRS602149/SRX547595/SRR1791100/SRR1791100.sra	1	"HIGH NON-GENIC CONTENT (genes detected > 35000, exon-intron ratio < 1, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_7_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293007	@dbgap@:reads/SRP011999/SRS602149/SRX547595/SRR1293007/SRR1293007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANYEJ-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYGB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYGB-04A-01R	RNA	EFO	SRS602163	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYGB-04A-01R A32737 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32737	SRX547615	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYGB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANYGB-04A-01R A32737 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2277-1./A32737.fastq	SRR1790998	@dbgap@:reads/SRP011999/SRS602163/SRX547615/SRR1790998/SRR1790998.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_4_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292947	@dbgap@:reads/SRP011999/SRS602163/SRX547615/SRR1292947/SRR1292947.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANYGB-04A-01R.exon.quantification.txt	3			
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYGB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYGB-04A-01R	RNA	EFO	SRS602163	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYGB-04A-01R A32737 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32737	SRX547615	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYGB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANYGB-04A-01R A32737 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2277-1./A32737.fastq	SRR1790998	@dbgap@:reads/SRP011999/SRS602163/SRX547615/SRR1790998/SRR1790998.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_4_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292947	@dbgap@:reads/SRP011999/SRS602163/SRX547615/SRR1292947/SRR1292947.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANYGB-04A-01R.gene.quantification.txt	3			
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYGB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYGB-04A-01R	RNA	EFO	SRS602163	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYGB-04A-01R A32737 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32737	SRX547615	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYGB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANYGB-04A-01R A32737 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2277-1./A32737.fastq	SRR1790998	@dbgap@:reads/SRP011999/SRS602163/SRX547615/SRR1790998/SRR1790998.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_4_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292947	@dbgap@:reads/SRP011999/SRS602163/SRX547615/SRR1292947/SRR1292947.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANYGB-04A-01R.isoform.quantification.txt	3			
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYGB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYGB-04A-01R	RNA	EFO	SRS602163	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYGB-04A-01R A32737 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32737	SRX547615	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYGB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANYGB-04A-01R A32737 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2277-1./A32737.fastq	SRR1790998	@dbgap@:reads/SRP011999/SRS602163/SRX547615/SRR1790998/SRR1790998.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_4_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292947	@dbgap@:reads/SRP011999/SRS602163/SRX547615/SRR1292947/SRR1292947.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANYGB-04A-01R.fusion.vcf	3			
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYGB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYGB-04A-01R	RNA	EFO	SRS602163	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYGB-04A-01R A32737 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32737	SRX547615	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYGB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANYGB-04A-01R A32737 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2277-1./A32737.fastq	SRR1790998	@dbgap@:reads/SRP011999/SRS602163/SRX547615/SRR1790998/SRR1790998.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_4_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292947	@dbgap@:reads/SRP011999/SRS602163/SRX547615/SRR1292947/SRR1292947.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANYGB-04A-01R.indel.vcf	3			
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYGB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYGB-04A-01R	RNA	EFO	SRS602163	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYGB-04A-01R A32737 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32737	SRX547615	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYGB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANYGB-04A-01R A32737 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2277-1./A32737.fastq	SRR1790998	@dbgap@:reads/SRP011999/SRS602163/SRX547615/SRR1790998/SRR1790998.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_4_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292947	@dbgap@:reads/SRP011999/SRS602163/SRX547615/SRR1292947/SRR1292947.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANYGB-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYGB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYGB-09A-01R	RNA	EFO	SRS602131	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYGB-09A-01R A32738 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32738	SRX547632	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYGB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANYGB-09A-01R A32738 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2294-1..1/A32738.fastq	SRR1791027	@dbgap@:reads/SRP011999/SRS602131/SRX547632/SRR1791027/SRR1791027.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_5_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292967	@dbgap@:reads/SRP011999/SRS602131/SRX547632/SRR1292967/SRR1292967.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANYGB-09A-01R.exon.quantification.txt	3			
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYGB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYGB-09A-01R	RNA	EFO	SRS602131	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYGB-09A-01R A32738 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32738	SRX547632	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYGB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANYGB-09A-01R A32738 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2294-1..1/A32738.fastq	SRR1791027	@dbgap@:reads/SRP011999/SRS602131/SRX547632/SRR1791027/SRR1791027.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_5_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292967	@dbgap@:reads/SRP011999/SRS602131/SRX547632/SRR1292967/SRR1292967.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANYGB-09A-01R.gene.quantification.txt	3			
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYGB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYGB-09A-01R	RNA	EFO	SRS602131	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYGB-09A-01R A32738 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32738	SRX547632	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYGB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANYGB-09A-01R A32738 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2294-1..1/A32738.fastq	SRR1791027	@dbgap@:reads/SRP011999/SRS602131/SRX547632/SRR1791027/SRR1791027.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_5_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292967	@dbgap@:reads/SRP011999/SRS602131/SRX547632/SRR1292967/SRR1292967.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANYGB-09A-01R.isoform.quantification.txt	3			
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYGB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYGB-09A-01R	RNA	EFO	SRS602131	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYGB-09A-01R A32738 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32738	SRX547632	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYGB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANYGB-09A-01R A32738 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2294-1..1/A32738.fastq	SRR1791027	@dbgap@:reads/SRP011999/SRS602131/SRX547632/SRR1791027/SRR1791027.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_5_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292967	@dbgap@:reads/SRP011999/SRS602131/SRX547632/SRR1292967/SRR1292967.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANYGB-09A-01R.fusion.vcf	3			
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYGB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYGB-09A-01R	RNA	EFO	SRS602131	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYGB-09A-01R A32738 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32738	SRX547632	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYGB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANYGB-09A-01R A32738 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2294-1..1/A32738.fastq	SRR1791027	@dbgap@:reads/SRP011999/SRS602131/SRX547632/SRR1791027/SRR1791027.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_5_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292967	@dbgap@:reads/SRP011999/SRS602131/SRX547632/SRR1292967/SRR1292967.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANYGB-09A-01R.indel.vcf	3			
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYGB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYGB-09A-01R	RNA	EFO	SRS602131	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYGB-09A-01R A32738 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32738	SRX547632	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYGB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANYGB-09A-01R A32738 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2294-1..1/A32738.fastq	SRR1791027	@dbgap@:reads/SRP011999/SRS602131/SRX547632/SRR1791027/SRR1791027.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_5_TGACCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292967	@dbgap@:reads/SRP011999/SRS602131/SRX547632/SRR1292967/SRR1292967.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANYGB-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYYV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYYV-04A-01R	RNA	EFO	SRS602109	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYYV-04A-01R A32727 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32727	SRX547629	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYYV-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANYYV-04A-01R A32727 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2285-1./A32727.fastq	SRR1790993	@dbgap@:reads/SRP011999/SRS602109/SRX547629/SRR1790993/SRR1790993.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_4_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293012	@dbgap@:reads/SRP011999/SRS602109/SRX547629/SRR1293012/SRR1293012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANYYV-04A-01R.exon.quantification.txt	3			
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYYV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYYV-04A-01R	RNA	EFO	SRS602109	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYYV-04A-01R A32727 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32727	SRX547629	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYYV-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANYYV-04A-01R A32727 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2285-1./A32727.fastq	SRR1790993	@dbgap@:reads/SRP011999/SRS602109/SRX547629/SRR1790993/SRR1790993.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_4_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293012	@dbgap@:reads/SRP011999/SRS602109/SRX547629/SRR1293012/SRR1293012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANYYV-04A-01R.gene.quantification.txt	3			
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYYV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYYV-04A-01R	RNA	EFO	SRS602109	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYYV-04A-01R A32727 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32727	SRX547629	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYYV-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANYYV-04A-01R A32727 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2285-1./A32727.fastq	SRR1790993	@dbgap@:reads/SRP011999/SRS602109/SRX547629/SRR1790993/SRR1790993.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_4_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293012	@dbgap@:reads/SRP011999/SRS602109/SRX547629/SRR1293012/SRR1293012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANYYV-04A-01R.isoform.quantification.txt	3			
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYYV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYYV-04A-01R	RNA	EFO	SRS602109	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYYV-04A-01R A32727 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32727	SRX547629	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYYV-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANYYV-04A-01R A32727 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2285-1./A32727.fastq	SRR1790993	@dbgap@:reads/SRP011999/SRS602109/SRX547629/SRR1790993/SRR1790993.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_4_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293012	@dbgap@:reads/SRP011999/SRS602109/SRX547629/SRR1293012/SRR1293012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANYYV-04A-01R.fusion.vcf	3			
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYYV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYYV-04A-01R	RNA	EFO	SRS602109	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYYV-04A-01R A32727 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32727	SRX547629	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYYV-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANYYV-04A-01R A32727 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2285-1./A32727.fastq	SRR1790993	@dbgap@:reads/SRP011999/SRS602109/SRX547629/SRR1790993/SRR1790993.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_4_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293012	@dbgap@:reads/SRP011999/SRS602109/SRX547629/SRR1293012/SRR1293012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANYYV-04A-01R.indel.vcf	3			
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYYV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYYV-04A-01R	RNA	EFO	SRS602109	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYYV-04A-01R A32727 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32727	SRX547629	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYYV-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PANYYV-04A-01R A32727 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2285-1./A32727.fastq	SRR1790993	@dbgap@:reads/SRP011999/SRS602109/SRX547629/SRR1790993/SRR1790993.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_4_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293012	@dbgap@:reads/SRP011999/SRS602109/SRX547629/SRR1293012/SRR1293012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANYYV-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYZE-09A-01R	RNA	EFO	SRS602177	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYZE-09A-01R A32714 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32714	SRX547612	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYZE-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANYZE-09A-01R A32714 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2276-1./A32714.fastq	SRR1791036	@dbgap@:reads/SRP011999/SRS602177/SRX547612/SRR1791036/SRR1791036.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_3_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293000	@dbgap@:reads/SRP011999/SRS602177/SRX547612/SRR1293000/SRR1293000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANYZE-09A-01R.exon.quantification.txt	3			
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYZE-09A-01R	RNA	EFO	SRS602177	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYZE-09A-01R A32714 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32714	SRX547612	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYZE-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANYZE-09A-01R A32714 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2276-1./A32714.fastq	SRR1791036	@dbgap@:reads/SRP011999/SRS602177/SRX547612/SRR1791036/SRR1791036.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_3_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293000	@dbgap@:reads/SRP011999/SRS602177/SRX547612/SRR1293000/SRR1293000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANYZE-09A-01R.gene.quantification.txt	3			
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYZE-09A-01R	RNA	EFO	SRS602177	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYZE-09A-01R A32714 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32714	SRX547612	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYZE-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANYZE-09A-01R A32714 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2276-1./A32714.fastq	SRR1791036	@dbgap@:reads/SRP011999/SRS602177/SRX547612/SRR1791036/SRR1791036.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_3_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293000	@dbgap@:reads/SRP011999/SRS602177/SRX547612/SRR1293000/SRR1293000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANYZE-09A-01R.isoform.quantification.txt	3			
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYZE-09A-01R	RNA	EFO	SRS602177	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYZE-09A-01R A32714 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32714	SRX547612	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYZE-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANYZE-09A-01R A32714 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2276-1./A32714.fastq	SRR1791036	@dbgap@:reads/SRP011999/SRS602177/SRX547612/SRR1791036/SRR1791036.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_3_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293000	@dbgap@:reads/SRP011999/SRS602177/SRX547612/SRR1293000/SRR1293000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANYZE-09A-01R.fusion.vcf	3			
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYZE-09A-01R	RNA	EFO	SRS602177	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYZE-09A-01R A32714 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32714	SRX547612	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYZE-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANYZE-09A-01R A32714 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2276-1./A32714.fastq	SRR1791036	@dbgap@:reads/SRP011999/SRS602177/SRX547612/SRR1791036/SRR1791036.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_3_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293000	@dbgap@:reads/SRP011999/SRS602177/SRX547612/SRR1293000/SRR1293000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANYZE-09A-01R.indel.vcf	3			
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYZE-09A-01R	RNA	EFO	SRS602177	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANYZE-09A-01R A32714 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32714	SRX547612	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANYZE-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PANYZE-09A-01R A32714 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2276-1./A32714.fastq	SRR1791036	@dbgap@:reads/SRP011999/SRS602177/SRX547612/SRR1791036/SRR1791036.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_3_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293000	@dbgap@:reads/SRP011999/SRS602177/SRX547612/SRR1293000/SRR1293000.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANYZE-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANZPJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZPJ-04A-01R	RNA	EFO	SRS602031	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZPJ-04A-01R A32661 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32661	SRX543451	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANZPJ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANZPJ-04A-01R A32661 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2255-1./A32661.fastq	SRR1791023	@dbgap@:reads/SRP011999/SRS602031/SRX543451/SRR1791023/SRR1791023.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_6_GAAACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288056	@dbgap@:reads/SRP011999/SRS602031/SRX543451/SRR1288056/SRR1288056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANZPJ-04A-01R.exon.quantification.txt	3			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANZPJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZPJ-04A-01R	RNA	EFO	SRS602031	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZPJ-04A-01R A32661 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32661	SRX543451	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANZPJ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANZPJ-04A-01R A32661 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2255-1./A32661.fastq	SRR1791023	@dbgap@:reads/SRP011999/SRS602031/SRX543451/SRR1791023/SRR1791023.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_6_GAAACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288056	@dbgap@:reads/SRP011999/SRS602031/SRX543451/SRR1288056/SRR1288056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANZPJ-04A-01R.gene.quantification.txt	3			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANZPJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZPJ-04A-01R	RNA	EFO	SRS602031	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZPJ-04A-01R A32661 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32661	SRX543451	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANZPJ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANZPJ-04A-01R A32661 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2255-1./A32661.fastq	SRR1791023	@dbgap@:reads/SRP011999/SRS602031/SRX543451/SRR1791023/SRR1791023.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_6_GAAACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288056	@dbgap@:reads/SRP011999/SRS602031/SRX543451/SRR1288056/SRR1288056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANZPJ-04A-01R.isoform.quantification.txt	3			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANZPJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZPJ-04A-01R	RNA	EFO	SRS602031	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZPJ-04A-01R A32661 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32661	SRX543451	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANZPJ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANZPJ-04A-01R A32661 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2255-1./A32661.fastq	SRR1791023	@dbgap@:reads/SRP011999/SRS602031/SRX543451/SRR1791023/SRR1791023.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_6_GAAACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288056	@dbgap@:reads/SRP011999/SRS602031/SRX543451/SRR1288056/SRR1288056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANZPJ-04A-01R.fusion.vcf	3			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANZPJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZPJ-04A-01R	RNA	EFO	SRS602031	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZPJ-04A-01R A32661 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32661	SRX543451	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANZPJ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANZPJ-04A-01R A32661 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2255-1./A32661.fastq	SRR1791023	@dbgap@:reads/SRP011999/SRS602031/SRX543451/SRR1791023/SRR1791023.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_6_GAAACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288056	@dbgap@:reads/SRP011999/SRS602031/SRX543451/SRR1288056/SRR1288056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANZPJ-04A-01R.indel.vcf	3			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANZPJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZPJ-04A-01R	RNA	EFO	SRS602031	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZPJ-04A-01R A32661 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32661	SRX543451	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANZPJ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PANZPJ-04A-01R A32661 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2255-1./A32661.fastq	SRR1791023	@dbgap@:reads/SRP011999/SRS602031/SRX543451/SRR1791023/SRR1791023.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_6_GAAACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288056	@dbgap@:reads/SRP011999/SRS602031/SRX543451/SRR1288056/SRR1288056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANZPJ-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANZPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZPJ-09A-02R	RNA	EFO	SRS602209	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZPJ-09A-02R A33589 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33589	SRX547646	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANZPJ-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANZPJ-09A-02R A33589 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2180-1./A33589.fastq	SRR1791061	@dbgap@:reads/SRP011999/SRS602209/SRX547646/SRR1791061/SRR1791061.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_4_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293046	@dbgap@:reads/SRP011999/SRS602209/SRX547646/SRR1293046/SRR1293046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANZPJ-09A-02R.exon.quantification.txt	3			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANZPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZPJ-09A-02R	RNA	EFO	SRS602209	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZPJ-09A-02R A33589 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33589	SRX547646	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANZPJ-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANZPJ-09A-02R A33589 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2180-1./A33589.fastq	SRR1791061	@dbgap@:reads/SRP011999/SRS602209/SRX547646/SRR1791061/SRR1791061.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_4_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293046	@dbgap@:reads/SRP011999/SRS602209/SRX547646/SRR1293046/SRR1293046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANZPJ-09A-02R.gene.quantification.txt	3			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANZPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZPJ-09A-02R	RNA	EFO	SRS602209	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZPJ-09A-02R A33589 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33589	SRX547646	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANZPJ-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANZPJ-09A-02R A33589 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2180-1./A33589.fastq	SRR1791061	@dbgap@:reads/SRP011999/SRS602209/SRX547646/SRR1791061/SRR1791061.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_4_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293046	@dbgap@:reads/SRP011999/SRS602209/SRX547646/SRR1293046/SRR1293046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANZPJ-09A-02R.isoform.quantification.txt	3			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANZPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZPJ-09A-02R	RNA	EFO	SRS602209	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZPJ-09A-02R A33589 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33589	SRX547646	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANZPJ-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANZPJ-09A-02R A33589 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2180-1./A33589.fastq	SRR1791061	@dbgap@:reads/SRP011999/SRS602209/SRX547646/SRR1791061/SRR1791061.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_4_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293046	@dbgap@:reads/SRP011999/SRS602209/SRX547646/SRR1293046/SRR1293046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANZPJ-09A-02R.fusion.vcf	3			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANZPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZPJ-09A-02R	RNA	EFO	SRS602209	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZPJ-09A-02R A33589 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33589	SRX547646	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANZPJ-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANZPJ-09A-02R A33589 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2180-1./A33589.fastq	SRR1791061	@dbgap@:reads/SRP011999/SRS602209/SRX547646/SRR1791061/SRR1791061.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_4_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293046	@dbgap@:reads/SRP011999/SRS602209/SRX547646/SRR1293046/SRR1293046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANZPJ-09A-02R.indel.vcf	3			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANZPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZPJ-09A-02R	RNA	EFO	SRS602209	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZPJ-09A-02R A33589 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33589	SRX547646	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANZPJ-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANZPJ-09A-02R A33589 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2180-1./A33589.fastq	SRR1791061	@dbgap@:reads/SRP011999/SRS602209/SRX547646/SRR1791061/SRR1791061.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_4_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293046	@dbgap@:reads/SRP011999/SRS602209/SRX547646/SRR1293046/SRR1293046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANZPJ-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANZXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZXZ-03A-02R	RNA	EFO	SRS602211	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZXZ-03A-02R A33593 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33593	SRX547667	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANZXZ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANZXZ-03A-02R A33593 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2173-1./A33593.fastq	SRR1791035	@dbgap@:reads/SRP011999/SRS602211/SRX547667/SRR1791035/SRR1791035.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_5_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293067	@dbgap@:reads/SRP011999/SRS602211/SRX547667/SRR1293067/SRR1293067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANZXZ-03A-02R.exon.quantification.txt	3			
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANZXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZXZ-03A-02R	RNA	EFO	SRS602211	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZXZ-03A-02R A33593 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33593	SRX547667	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANZXZ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANZXZ-03A-02R A33593 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2173-1./A33593.fastq	SRR1791035	@dbgap@:reads/SRP011999/SRS602211/SRX547667/SRR1791035/SRR1791035.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_5_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293067	@dbgap@:reads/SRP011999/SRS602211/SRX547667/SRR1293067/SRR1293067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANZXZ-03A-02R.gene.quantification.txt	3			
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANZXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZXZ-03A-02R	RNA	EFO	SRS602211	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZXZ-03A-02R A33593 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33593	SRX547667	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANZXZ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANZXZ-03A-02R A33593 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2173-1./A33593.fastq	SRR1791035	@dbgap@:reads/SRP011999/SRS602211/SRX547667/SRR1791035/SRR1791035.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_5_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293067	@dbgap@:reads/SRP011999/SRS602211/SRX547667/SRR1293067/SRR1293067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PANZXZ-03A-02R.isoform.quantification.txt	3			
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANZXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZXZ-03A-02R	RNA	EFO	SRS602211	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZXZ-03A-02R A33593 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33593	SRX547667	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANZXZ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANZXZ-03A-02R A33593 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2173-1./A33593.fastq	SRR1791035	@dbgap@:reads/SRP011999/SRS602211/SRX547667/SRR1791035/SRR1791035.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_5_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293067	@dbgap@:reads/SRP011999/SRS602211/SRX547667/SRR1293067/SRR1293067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANZXZ-03A-02R.fusion.vcf	3			
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANZXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZXZ-03A-02R	RNA	EFO	SRS602211	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZXZ-03A-02R A33593 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33593	SRX547667	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANZXZ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANZXZ-03A-02R A33593 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2173-1./A33593.fastq	SRR1791035	@dbgap@:reads/SRP011999/SRS602211/SRX547667/SRR1791035/SRR1791035.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_5_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293067	@dbgap@:reads/SRP011999/SRS602211/SRX547667/SRR1293067/SRR1293067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PANZXZ-03A-02R.indel.vcf	3			
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANZXZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZXZ-03A-02R	RNA	EFO	SRS602211	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANZXZ-03A-02R A33593 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33593	SRX547667	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PANZXZ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PANZXZ-03A-02R A33593 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2173-1./A33593.fastq	SRR1791035	@dbgap@:reads/SRP011999/SRS602211/SRX547667/SRR1791035/SRR1791035.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_5_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293067	@dbgap@:reads/SRP011999/SRS602211/SRX547667/SRR1293067/SRR1293067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PANZXZ-03A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPACP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPACP-04A-02R	RNA	EFO	SRS602220	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPACP-04A-02R A33592 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33592	SRX547665	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPACP-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPACP-04A-02R A33592 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2197-1./A33592.fastq	SRR1791105	@dbgap@:reads/SRP011999/SRS602220/SRX547665/SRR1791105/SRR1791105.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_5_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293040	@dbgap@:reads/SRP011999/SRS602220/SRX547665/SRR1293040/SRR1293040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPACP-04A-02R.exon.quantification.txt	3			
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPACP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPACP-04A-02R	RNA	EFO	SRS602220	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPACP-04A-02R A33592 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33592	SRX547665	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPACP-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPACP-04A-02R A33592 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2197-1./A33592.fastq	SRR1791105	@dbgap@:reads/SRP011999/SRS602220/SRX547665/SRR1791105/SRR1791105.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_5_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293040	@dbgap@:reads/SRP011999/SRS602220/SRX547665/SRR1293040/SRR1293040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPACP-04A-02R.gene.quantification.txt	3			
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPACP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPACP-04A-02R	RNA	EFO	SRS602220	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPACP-04A-02R A33592 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33592	SRX547665	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPACP-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPACP-04A-02R A33592 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2197-1./A33592.fastq	SRR1791105	@dbgap@:reads/SRP011999/SRS602220/SRX547665/SRR1791105/SRR1791105.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_5_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293040	@dbgap@:reads/SRP011999/SRS602220/SRX547665/SRR1293040/SRR1293040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPACP-04A-02R.isoform.quantification.txt	3			
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPACP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPACP-04A-02R	RNA	EFO	SRS602220	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPACP-04A-02R A33592 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33592	SRX547665	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPACP-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPACP-04A-02R A33592 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2197-1./A33592.fastq	SRR1791105	@dbgap@:reads/SRP011999/SRS602220/SRX547665/SRR1791105/SRR1791105.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_5_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293040	@dbgap@:reads/SRP011999/SRS602220/SRX547665/SRR1293040/SRR1293040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPACP-04A-02R.fusion.vcf	3			
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPACP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPACP-04A-02R	RNA	EFO	SRS602220	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPACP-04A-02R A33592 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33592	SRX547665	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPACP-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPACP-04A-02R A33592 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2197-1./A33592.fastq	SRR1791105	@dbgap@:reads/SRP011999/SRS602220/SRX547665/SRR1791105/SRR1791105.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_5_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293040	@dbgap@:reads/SRP011999/SRS602220/SRX547665/SRR1293040/SRR1293040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPACP-04A-02R.indel.vcf	3			
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPACP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPACP-04A-02R	RNA	EFO	SRS602220	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPACP-04A-02R A33592 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33592	SRX547665	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPACP-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPACP-04A-02R A33592 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2197-1./A33592.fastq	SRR1791105	@dbgap@:reads/SRP011999/SRS602220/SRX547665/SRR1791105/SRR1791105.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_5_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293040	@dbgap@:reads/SRP011999/SRS602220/SRX547665/SRR1293040/SRR1293040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPACP-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAGK-04A-01R	RNA	EFO	SRS602049	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAGK-04A-01R A32639 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32639	SRX543450	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPAGK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPAGK-04A-01R A32639 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2249-1./A32639.fastq	SRR1791118	@dbgap@:reads/SRP011999/SRS602049/SRX543450/SRR1791118/SRR1791118.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_8_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288011	@dbgap@:reads/SRP011999/SRS602049/SRX543450/SRR1288011/SRR1288011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPAGK-04A-01R.exon.quantification.txt	3			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAGK-04A-01R	RNA	EFO	SRS602049	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAGK-04A-01R A32639 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32639	SRX543450	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPAGK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPAGK-04A-01R A32639 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2249-1./A32639.fastq	SRR1791118	@dbgap@:reads/SRP011999/SRS602049/SRX543450/SRR1791118/SRR1791118.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_8_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288011	@dbgap@:reads/SRP011999/SRS602049/SRX543450/SRR1288011/SRR1288011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPAGK-04A-01R.gene.quantification.txt	3			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAGK-04A-01R	RNA	EFO	SRS602049	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAGK-04A-01R A32639 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32639	SRX543450	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPAGK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPAGK-04A-01R A32639 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2249-1./A32639.fastq	SRR1791118	@dbgap@:reads/SRP011999/SRS602049/SRX543450/SRR1791118/SRR1791118.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_8_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288011	@dbgap@:reads/SRP011999/SRS602049/SRX543450/SRR1288011/SRR1288011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPAGK-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAGK-04A-01R	RNA	EFO	SRS602049	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAGK-04A-01R A32639 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32639	SRX543450	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPAGK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPAGK-04A-01R A32639 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2249-1./A32639.fastq	SRR1791118	@dbgap@:reads/SRP011999/SRS602049/SRX543450/SRR1791118/SRR1791118.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_8_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288011	@dbgap@:reads/SRP011999/SRS602049/SRX543450/SRR1288011/SRR1288011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPAGK-04A-01R.fusion.vcf	3			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAGK-04A-01R	RNA	EFO	SRS602049	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAGK-04A-01R A32639 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32639	SRX543450	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPAGK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPAGK-04A-01R A32639 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2249-1./A32639.fastq	SRR1791118	@dbgap@:reads/SRP011999/SRS602049/SRX543450/SRR1791118/SRR1791118.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_8_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288011	@dbgap@:reads/SRP011999/SRS602049/SRX543450/SRR1288011/SRR1288011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPAGK-04A-01R.indel.vcf	3			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAGK-04A-01R	RNA	EFO	SRS602049	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAGK-04A-01R A32639 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32639	SRX543450	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPAGK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPAGK-04A-01R A32639 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2249-1./A32639.fastq	SRR1791118	@dbgap@:reads/SRP011999/SRS602049/SRX543450/SRR1791118/SRR1791118.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_8_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288011	@dbgap@:reads/SRP011999/SRS602049/SRX543450/SRR1288011/SRR1288011.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPAGK-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAGK-09A-01R	RNA	EFO	SRS602071	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAGK-09A-01R A32640 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32640	SRX543389	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPAGK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPAGK-09A-01R A32640 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2219-1./A32640.fastq	SRR1791063	@dbgap@:reads/SRP011999/SRS602071/SRX543389/SRR1791063/SRR1791063.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_7_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288017	@dbgap@:reads/SRP011999/SRS602071/SRX543389/SRR1288017/SRR1288017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPAGK-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAGK-09A-01R	RNA	EFO	SRS602071	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAGK-09A-01R A32640 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32640	SRX543389	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPAGK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPAGK-09A-01R A32640 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2219-1./A32640.fastq	SRR1791063	@dbgap@:reads/SRP011999/SRS602071/SRX543389/SRR1791063/SRR1791063.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_7_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288017	@dbgap@:reads/SRP011999/SRS602071/SRX543389/SRR1288017/SRR1288017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPAGK-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAGK-09A-01R	RNA	EFO	SRS602071	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAGK-09A-01R A32640 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32640	SRX543389	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPAGK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPAGK-09A-01R A32640 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2219-1./A32640.fastq	SRR1791063	@dbgap@:reads/SRP011999/SRS602071/SRX543389/SRR1791063/SRR1791063.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_7_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288017	@dbgap@:reads/SRP011999/SRS602071/SRX543389/SRR1288017/SRR1288017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPAGK-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAGK-09A-01R	RNA	EFO	SRS602071	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAGK-09A-01R A32640 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32640	SRX543389	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPAGK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPAGK-09A-01R A32640 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2219-1./A32640.fastq	SRR1791063	@dbgap@:reads/SRP011999/SRS602071/SRX543389/SRR1791063/SRR1791063.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_7_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288017	@dbgap@:reads/SRP011999/SRS602071/SRX543389/SRR1288017/SRR1288017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPAGK-09A-01R.fusion.vcf	3			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAGK-09A-01R	RNA	EFO	SRS602071	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAGK-09A-01R A32640 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32640	SRX543389	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPAGK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPAGK-09A-01R A32640 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2219-1./A32640.fastq	SRR1791063	@dbgap@:reads/SRP011999/SRS602071/SRX543389/SRR1791063/SRR1791063.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_7_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288017	@dbgap@:reads/SRP011999/SRS602071/SRX543389/SRR1288017/SRR1288017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPAGK-09A-01R.indel.vcf	3			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAGK-09A-01R	RNA	EFO	SRS602071	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAGK-09A-01R A32640 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32640	SRX543389	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPAGK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPAGK-09A-01R A32640 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2219-1./A32640.fastq	SRR1791063	@dbgap@:reads/SRP011999/SRS602071/SRX543389/SRR1791063/SRR1791063.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_7_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288017	@dbgap@:reads/SRP011999/SRS602071/SRX543389/SRR1288017/SRR1288017.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPAGK-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAIZ-09A-01R	RNA	EFO	SRS602141	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAIZ-09A-01R A32723 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32723	SRX547574	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPAIZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPAIZ-09A-01R A32723 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2283-1./A32723.fastq	SRR1791000	@dbgap@:reads/SRP011999/SRS602141/SRX547574/SRR1791000/SRR1791000.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_2_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292963	@dbgap@:reads/SRP011999/SRS602141/SRX547574/SRR1292963/SRR1292963.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPAIZ-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAIZ-09A-01R	RNA	EFO	SRS602141	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAIZ-09A-01R A32723 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32723	SRX547574	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPAIZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPAIZ-09A-01R A32723 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2283-1./A32723.fastq	SRR1791000	@dbgap@:reads/SRP011999/SRS602141/SRX547574/SRR1791000/SRR1791000.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_2_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292963	@dbgap@:reads/SRP011999/SRS602141/SRX547574/SRR1292963/SRR1292963.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPAIZ-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAIZ-09A-01R	RNA	EFO	SRS602141	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAIZ-09A-01R A32723 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32723	SRX547574	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPAIZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPAIZ-09A-01R A32723 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2283-1./A32723.fastq	SRR1791000	@dbgap@:reads/SRP011999/SRS602141/SRX547574/SRR1791000/SRR1791000.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_2_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292963	@dbgap@:reads/SRP011999/SRS602141/SRX547574/SRR1292963/SRR1292963.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPAIZ-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAIZ-09A-01R	RNA	EFO	SRS602141	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAIZ-09A-01R A32723 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32723	SRX547574	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPAIZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPAIZ-09A-01R A32723 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2283-1./A32723.fastq	SRR1791000	@dbgap@:reads/SRP011999/SRS602141/SRX547574/SRR1791000/SRR1791000.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_2_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292963	@dbgap@:reads/SRP011999/SRS602141/SRX547574/SRR1292963/SRR1292963.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPAIZ-09A-01R.fusion.vcf	3			
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAIZ-09A-01R	RNA	EFO	SRS602141	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAIZ-09A-01R A32723 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32723	SRX547574	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPAIZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPAIZ-09A-01R A32723 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2283-1./A32723.fastq	SRR1791000	@dbgap@:reads/SRP011999/SRS602141/SRX547574/SRR1791000/SRR1791000.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_2_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292963	@dbgap@:reads/SRP011999/SRS602141/SRX547574/SRR1292963/SRR1292963.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPAIZ-09A-01R.indel.vcf	3			
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAIZ-09A-01R	RNA	EFO	SRS602141	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAIZ-09A-01R A32723 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32723	SRX547574	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPAIZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPAIZ-09A-01R A32723 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2283-1./A32723.fastq	SRR1791000	@dbgap@:reads/SRP011999/SRS602141/SRX547574/SRR1791000/SRR1791000.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_2_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292963	@dbgap@:reads/SRP011999/SRS602141/SRX547574/SRR1292963/SRR1292963.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPAIZ-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPBCI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBCI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBCI-09A-01R	RNA	EFO	SRS602128	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBCI-09A-01R A32731 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32731	SRX547579	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBCI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPBCI-09A-01R A32731 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2269-1./A32731.fastq	SRR1791083	@dbgap@:reads/SRP011999/SRS602128/SRX547579/SRR1791083/SRR1791083.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_4_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292989	@dbgap@:reads/SRP011999/SRS602128/SRX547579/SRR1292989/SRR1292989.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPBCI-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPBCI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBCI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBCI-09A-01R	RNA	EFO	SRS602128	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBCI-09A-01R A32731 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32731	SRX547579	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBCI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPBCI-09A-01R A32731 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2269-1./A32731.fastq	SRR1791083	@dbgap@:reads/SRP011999/SRS602128/SRX547579/SRR1791083/SRR1791083.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_4_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292989	@dbgap@:reads/SRP011999/SRS602128/SRX547579/SRR1292989/SRR1292989.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPBCI-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPBCI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBCI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBCI-09A-01R	RNA	EFO	SRS602128	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBCI-09A-01R A32731 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32731	SRX547579	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBCI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPBCI-09A-01R A32731 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2269-1./A32731.fastq	SRR1791083	@dbgap@:reads/SRP011999/SRS602128/SRX547579/SRR1791083/SRR1791083.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_4_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292989	@dbgap@:reads/SRP011999/SRS602128/SRX547579/SRR1292989/SRR1292989.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPBCI-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPBCI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBCI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBCI-09A-01R	RNA	EFO	SRS602128	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBCI-09A-01R A32731 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32731	SRX547579	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBCI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPBCI-09A-01R A32731 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2269-1./A32731.fastq	SRR1791083	@dbgap@:reads/SRP011999/SRS602128/SRX547579/SRR1791083/SRR1791083.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_4_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292989	@dbgap@:reads/SRP011999/SRS602128/SRX547579/SRR1292989/SRR1292989.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPBCI-09A-01R.fusion.vcf	3			
TARGET-10-PAPBCI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBCI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBCI-09A-01R	RNA	EFO	SRS602128	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBCI-09A-01R A32731 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32731	SRX547579	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBCI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPBCI-09A-01R A32731 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2269-1./A32731.fastq	SRR1791083	@dbgap@:reads/SRP011999/SRS602128/SRX547579/SRR1791083/SRR1791083.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_4_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292989	@dbgap@:reads/SRP011999/SRS602128/SRX547579/SRR1292989/SRR1292989.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPBCI-09A-01R.indel.vcf	3			
TARGET-10-PAPBCI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBCI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBCI-09A-01R	RNA	EFO	SRS602128	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBCI-09A-01R A32731 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32731	SRX547579	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBCI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPBCI-09A-01R A32731 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2269-1./A32731.fastq	SRR1791083	@dbgap@:reads/SRP011999/SRS602128/SRX547579/SRR1791083/SRR1791083.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_4_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292989	@dbgap@:reads/SRP011999/SRS602128/SRX547579/SRR1292989/SRR1292989.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPBCI-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBES-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBES-03A-01R	RNA	EFO	SRS602105	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBES-03A-01R A32732 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32732	SRX547569	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBES-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPBES-03A-01R A32732 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2286-1./A32732.fastq	SRR1791008	@dbgap@:reads/SRP011999/SRS602105/SRX547569/SRR1791008/SRR1791008.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_5_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293006	@dbgap@:reads/SRP011999/SRS602105/SRX547569/SRR1293006/SRR1293006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPBES-03A-01R.exon.quantification.txt	3			
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBES-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBES-03A-01R	RNA	EFO	SRS602105	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBES-03A-01R A32732 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32732	SRX547569	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBES-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPBES-03A-01R A32732 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2286-1./A32732.fastq	SRR1791008	@dbgap@:reads/SRP011999/SRS602105/SRX547569/SRR1791008/SRR1791008.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_5_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293006	@dbgap@:reads/SRP011999/SRS602105/SRX547569/SRR1293006/SRR1293006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPBES-03A-01R.gene.quantification.txt	3			
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBES-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBES-03A-01R	RNA	EFO	SRS602105	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBES-03A-01R A32732 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32732	SRX547569	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBES-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPBES-03A-01R A32732 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2286-1./A32732.fastq	SRR1791008	@dbgap@:reads/SRP011999/SRS602105/SRX547569/SRR1791008/SRR1791008.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_5_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293006	@dbgap@:reads/SRP011999/SRS602105/SRX547569/SRR1293006/SRR1293006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPBES-03A-01R.isoform.quantification.txt	3			
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBES-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBES-03A-01R	RNA	EFO	SRS602105	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBES-03A-01R A32732 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32732	SRX547569	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBES-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPBES-03A-01R A32732 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2286-1./A32732.fastq	SRR1791008	@dbgap@:reads/SRP011999/SRS602105/SRX547569/SRR1791008/SRR1791008.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_5_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293006	@dbgap@:reads/SRP011999/SRS602105/SRX547569/SRR1293006/SRR1293006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPBES-03A-01R.fusion.vcf	3			
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBES-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBES-03A-01R	RNA	EFO	SRS602105	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBES-03A-01R A32732 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32732	SRX547569	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBES-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPBES-03A-01R A32732 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2286-1./A32732.fastq	SRR1791008	@dbgap@:reads/SRP011999/SRS602105/SRX547569/SRR1791008/SRR1791008.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_5_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293006	@dbgap@:reads/SRP011999/SRS602105/SRX547569/SRR1293006/SRR1293006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPBES-03A-01R.indel.vcf	3			
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBES-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBES-03A-01R	RNA	EFO	SRS602105	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBES-03A-01R A32732 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32732	SRX547569	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBES-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPBES-03A-01R A32732 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2286-1./A32732.fastq	SRR1791008	@dbgap@:reads/SRP011999/SRS602105/SRX547569/SRR1791008/SRR1791008.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_5_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293006	@dbgap@:reads/SRP011999/SRS602105/SRX547569/SRR1293006/SRR1293006.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPBES-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBFN-09A-01R	RNA	EFO	SRS602108	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBFN-09A-01R A32715 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32715	SRX547616	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBFN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPBFN-09A-01R A32715 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2288-1./A32715.fastq	SRR1791079	@dbgap@:reads/SRP011999/SRS602108/SRX547616/SRR1791079/SRR1791079.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_7_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292954	@dbgap@:reads/SRP011999/SRS602108/SRX547616/SRR1292954/SRR1292954.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPBFN-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBFN-09A-01R	RNA	EFO	SRS602108	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBFN-09A-01R A32715 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32715	SRX547616	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBFN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPBFN-09A-01R A32715 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2288-1./A32715.fastq	SRR1791079	@dbgap@:reads/SRP011999/SRS602108/SRX547616/SRR1791079/SRR1791079.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_7_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292954	@dbgap@:reads/SRP011999/SRS602108/SRX547616/SRR1292954/SRR1292954.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPBFN-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBFN-09A-01R	RNA	EFO	SRS602108	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBFN-09A-01R A32715 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32715	SRX547616	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBFN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPBFN-09A-01R A32715 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2288-1./A32715.fastq	SRR1791079	@dbgap@:reads/SRP011999/SRS602108/SRX547616/SRR1791079/SRR1791079.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_7_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292954	@dbgap@:reads/SRP011999/SRS602108/SRX547616/SRR1292954/SRR1292954.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPBFN-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBFN-09A-01R	RNA	EFO	SRS602108	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBFN-09A-01R A32715 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32715	SRX547616	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBFN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPBFN-09A-01R A32715 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2288-1./A32715.fastq	SRR1791079	@dbgap@:reads/SRP011999/SRS602108/SRX547616/SRR1791079/SRR1791079.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_7_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292954	@dbgap@:reads/SRP011999/SRS602108/SRX547616/SRR1292954/SRR1292954.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPBFN-09A-01R.fusion.vcf	3			
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBFN-09A-01R	RNA	EFO	SRS602108	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBFN-09A-01R A32715 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32715	SRX547616	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBFN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPBFN-09A-01R A32715 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2288-1./A32715.fastq	SRR1791079	@dbgap@:reads/SRP011999/SRS602108/SRX547616/SRR1791079/SRR1791079.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_7_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292954	@dbgap@:reads/SRP011999/SRS602108/SRX547616/SRR1292954/SRR1292954.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPBFN-09A-01R.indel.vcf	3			
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBFN-09A-01R	RNA	EFO	SRS602108	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBFN-09A-01R A32715 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32715	SRX547616	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBFN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPBFN-09A-01R A32715 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2288-1./A32715.fastq	SRR1791079	@dbgap@:reads/SRP011999/SRS602108/SRX547616/SRR1791079/SRR1791079.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_7_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292954	@dbgap@:reads/SRP011999/SRS602108/SRX547616/SRR1292954/SRR1292954.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPBFN-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBSY-09A-01R	RNA	EFO	SRS602158	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBSY-09A-01R A32716 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32716	SRX547603	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBSY-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPBSY-09A-01R A32716 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2280-1./A32716.fastq	SRR1791073	@dbgap@:reads/SRP011999/SRS602158/SRX547603/SRR1791073/SRR1791073.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_7_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293010	@dbgap@:reads/SRP011999/SRS602158/SRX547603/SRR1293010/SRR1293010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPBSY-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBSY-09A-01R	RNA	EFO	SRS602158	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBSY-09A-01R A32716 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32716	SRX547603	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBSY-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPBSY-09A-01R A32716 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2280-1./A32716.fastq	SRR1791073	@dbgap@:reads/SRP011999/SRS602158/SRX547603/SRR1791073/SRR1791073.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_7_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293010	@dbgap@:reads/SRP011999/SRS602158/SRX547603/SRR1293010/SRR1293010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPBSY-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBSY-09A-01R	RNA	EFO	SRS602158	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBSY-09A-01R A32716 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32716	SRX547603	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBSY-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPBSY-09A-01R A32716 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2280-1./A32716.fastq	SRR1791073	@dbgap@:reads/SRP011999/SRS602158/SRX547603/SRR1791073/SRR1791073.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_7_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293010	@dbgap@:reads/SRP011999/SRS602158/SRX547603/SRR1293010/SRR1293010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPBSY-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBSY-09A-01R	RNA	EFO	SRS602158	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBSY-09A-01R A32716 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32716	SRX547603	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBSY-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPBSY-09A-01R A32716 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2280-1./A32716.fastq	SRR1791073	@dbgap@:reads/SRP011999/SRS602158/SRX547603/SRR1791073/SRR1791073.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_7_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293010	@dbgap@:reads/SRP011999/SRS602158/SRX547603/SRR1293010/SRR1293010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPBSY-09A-01R.fusion.vcf	3			
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBSY-09A-01R	RNA	EFO	SRS602158	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBSY-09A-01R A32716 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32716	SRX547603	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBSY-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPBSY-09A-01R A32716 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2280-1./A32716.fastq	SRR1791073	@dbgap@:reads/SRP011999/SRS602158/SRX547603/SRR1791073/SRR1791073.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_7_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293010	@dbgap@:reads/SRP011999/SRS602158/SRX547603/SRR1293010/SRR1293010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPBSY-09A-01R.indel.vcf	3			
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBSY-09A-01R	RNA	EFO	SRS602158	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBSY-09A-01R A32716 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32716	SRX547603	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBSY-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPBSY-09A-01R A32716 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2280-1./A32716.fastq	SRR1791073	@dbgap@:reads/SRP011999/SRS602158/SRX547603/SRR1791073/SRR1791073.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_7_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293010	@dbgap@:reads/SRP011999/SRS602158/SRX547603/SRR1293010/SRR1293010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPBSY-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBZK-09A-01R	RNA	EFO	SRS602169	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBZK-09A-01R A32717 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32717	SRX547573	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBZK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPBZK-09A-01R A32717 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2295-1..1/A32717.fastq	SRR1791022	@dbgap@:reads/SRP011999/SRS602169/SRX547573/SRR1791022/SRR1791022.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_6_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293018	@dbgap@:reads/SRP011999/SRS602169/SRX547573/SRR1293018/SRR1293018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPBZK-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBZK-09A-01R	RNA	EFO	SRS602169	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBZK-09A-01R A32717 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32717	SRX547573	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBZK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPBZK-09A-01R A32717 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2295-1..1/A32717.fastq	SRR1791022	@dbgap@:reads/SRP011999/SRS602169/SRX547573/SRR1791022/SRR1791022.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_6_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293018	@dbgap@:reads/SRP011999/SRS602169/SRX547573/SRR1293018/SRR1293018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPBZK-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBZK-09A-01R	RNA	EFO	SRS602169	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBZK-09A-01R A32717 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32717	SRX547573	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBZK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPBZK-09A-01R A32717 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2295-1..1/A32717.fastq	SRR1791022	@dbgap@:reads/SRP011999/SRS602169/SRX547573/SRR1791022/SRR1791022.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_6_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293018	@dbgap@:reads/SRP011999/SRS602169/SRX547573/SRR1293018/SRR1293018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPBZK-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBZK-09A-01R	RNA	EFO	SRS602169	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBZK-09A-01R A32717 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32717	SRX547573	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBZK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPBZK-09A-01R A32717 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2295-1..1/A32717.fastq	SRR1791022	@dbgap@:reads/SRP011999/SRS602169/SRX547573/SRR1791022/SRR1791022.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_6_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293018	@dbgap@:reads/SRP011999/SRS602169/SRX547573/SRR1293018/SRR1293018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPBZK-09A-01R.fusion.vcf	3			
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBZK-09A-01R	RNA	EFO	SRS602169	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBZK-09A-01R A32717 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32717	SRX547573	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBZK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPBZK-09A-01R A32717 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2295-1..1/A32717.fastq	SRR1791022	@dbgap@:reads/SRP011999/SRS602169/SRX547573/SRR1791022/SRR1791022.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_6_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293018	@dbgap@:reads/SRP011999/SRS602169/SRX547573/SRR1293018/SRR1293018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPBZK-09A-01R.indel.vcf	3			
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPBZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBZK-09A-01R	RNA	EFO	SRS602169	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPBZK-09A-01R A32717 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32717	SRX547573	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPBZK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPBZK-09A-01R A32717 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2295-1..1/A32717.fastq	SRR1791022	@dbgap@:reads/SRP011999/SRS602169/SRX547573/SRR1791022/SRR1791022.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_6_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293018	@dbgap@:reads/SRP011999/SRS602169/SRX547573/SRR1293018/SRR1293018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPBZK-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPCUR-09A-01R	RNA	EFO	SRS602045	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPCUR-09A-01R A32637 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32637	SRX730958	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPCUR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPCUR-09A-01R A32637 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2256-1./A32637.fastq	SRR1791005	@dbgap@:reads/SRP011999/SRS602045/SRX730958/SRR1791005/SRR1791005.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_7_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1610444	@dbgap@:reads/SRP011999/SRS602045/SRX730958/SRR1610444/SRR1610444.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPCUR-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPCUR-09A-01R	RNA	EFO	SRS602045	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPCUR-09A-01R A32637 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32637	SRX730958	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPCUR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPCUR-09A-01R A32637 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2256-1./A32637.fastq	SRR1791005	@dbgap@:reads/SRP011999/SRS602045/SRX730958/SRR1791005/SRR1791005.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_7_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1610444	@dbgap@:reads/SRP011999/SRS602045/SRX730958/SRR1610444/SRR1610444.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPCUR-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPCUR-09A-01R	RNA	EFO	SRS602045	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPCUR-09A-01R A32637 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32637	SRX730958	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPCUR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPCUR-09A-01R A32637 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2256-1./A32637.fastq	SRR1791005	@dbgap@:reads/SRP011999/SRS602045/SRX730958/SRR1791005/SRR1791005.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_7_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1610444	@dbgap@:reads/SRP011999/SRS602045/SRX730958/SRR1610444/SRR1610444.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPCUR-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPCUR-09A-01R	RNA	EFO	SRS602045	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPCUR-09A-01R A32637 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32637	SRX730958	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPCUR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPCUR-09A-01R A32637 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2256-1./A32637.fastq	SRR1791005	@dbgap@:reads/SRP011999/SRS602045/SRX730958/SRR1791005/SRR1791005.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_7_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1610444	@dbgap@:reads/SRP011999/SRS602045/SRX730958/SRR1610444/SRR1610444.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPCUR-09A-01R.fusion.vcf	3			
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPCUR-09A-01R	RNA	EFO	SRS602045	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPCUR-09A-01R A32637 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32637	SRX730958	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPCUR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPCUR-09A-01R A32637 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2256-1./A32637.fastq	SRR1791005	@dbgap@:reads/SRP011999/SRS602045/SRX730958/SRR1791005/SRR1791005.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_7_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1610444	@dbgap@:reads/SRP011999/SRS602045/SRX730958/SRR1610444/SRR1610444.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPCUR-09A-01R.indel.vcf	3			
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPCUR-09A-01R	RNA	EFO	SRS602045	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPCUR-09A-01R A32637 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32637	SRX730958	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPCUR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPCUR-09A-01R A32637 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2256-1./A32637.fastq	SRR1791005	@dbgap@:reads/SRP011999/SRS602045/SRX730958/SRR1791005/SRR1791005.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_7_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1610444	@dbgap@:reads/SRP011999/SRS602045/SRX730958/SRR1610444/SRR1610444.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPCUR-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPCVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPCVZ-04A-01R	RNA	EFO	SRS602085	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPCVZ-04A-01R A32641 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32641	SRX543443	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPCVZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPCVZ-04A-01R A32641 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2225-1./A32641.fastq	SRR1791042	@dbgap@:reads/SRP011999/SRS602085/SRX543443/SRR1791042/SRR1791042.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_6_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288044	@dbgap@:reads/SRP011999/SRS602085/SRX543443/SRR1288044/SRR1288044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPCVZ-04A-01R.exon.quantification.txt	3			
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPCVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPCVZ-04A-01R	RNA	EFO	SRS602085	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPCVZ-04A-01R A32641 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32641	SRX543443	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPCVZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPCVZ-04A-01R A32641 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2225-1./A32641.fastq	SRR1791042	@dbgap@:reads/SRP011999/SRS602085/SRX543443/SRR1791042/SRR1791042.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_6_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288044	@dbgap@:reads/SRP011999/SRS602085/SRX543443/SRR1288044/SRR1288044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPCVZ-04A-01R.gene.quantification.txt	3			
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPCVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPCVZ-04A-01R	RNA	EFO	SRS602085	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPCVZ-04A-01R A32641 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32641	SRX543443	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPCVZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPCVZ-04A-01R A32641 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2225-1./A32641.fastq	SRR1791042	@dbgap@:reads/SRP011999/SRS602085/SRX543443/SRR1791042/SRR1791042.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_6_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288044	@dbgap@:reads/SRP011999/SRS602085/SRX543443/SRR1288044/SRR1288044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPCVZ-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPCVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPCVZ-04A-01R	RNA	EFO	SRS602085	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPCVZ-04A-01R A32641 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32641	SRX543443	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPCVZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPCVZ-04A-01R A32641 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2225-1./A32641.fastq	SRR1791042	@dbgap@:reads/SRP011999/SRS602085/SRX543443/SRR1791042/SRR1791042.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_6_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288044	@dbgap@:reads/SRP011999/SRS602085/SRX543443/SRR1288044/SRR1288044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPCVZ-04A-01R.fusion.vcf	3			
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPCVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPCVZ-04A-01R	RNA	EFO	SRS602085	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPCVZ-04A-01R A32641 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32641	SRX543443	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPCVZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPCVZ-04A-01R A32641 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2225-1./A32641.fastq	SRR1791042	@dbgap@:reads/SRP011999/SRS602085/SRX543443/SRR1791042/SRR1791042.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_6_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288044	@dbgap@:reads/SRP011999/SRS602085/SRX543443/SRR1288044/SRR1288044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPCVZ-04A-01R.indel.vcf	3			
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPCVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPCVZ-04A-01R	RNA	EFO	SRS602085	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPCVZ-04A-01R A32641 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32641	SRX543443	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPCVZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPCVZ-04A-01R A32641 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2225-1./A32641.fastq	SRR1791042	@dbgap@:reads/SRP011999/SRS602085/SRX543443/SRR1791042/SRR1791042.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_6_TATAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288044	@dbgap@:reads/SRP011999/SRS602085/SRX543443/SRR1288044/SRR1288044.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPCVZ-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDJM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDJM-04A-01R	RNA	EFO	SRS602030	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDJM-04A-01R A32634 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32634	SRX543390	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDJM-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPDJM-04A-01R A32634 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2251-1./A32634.fastq	SRR1791001	@dbgap@:reads/SRP011999/SRS602030/SRX543390/SRR1791001/SRR1791001.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_2_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288071	@dbgap@:reads/SRP011999/SRS602030/SRX543390/SRR1288071/SRR1288071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPDJM-04A-01R.exon.quantification.txt	3			
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDJM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDJM-04A-01R	RNA	EFO	SRS602030	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDJM-04A-01R A32634 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32634	SRX543390	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDJM-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPDJM-04A-01R A32634 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2251-1./A32634.fastq	SRR1791001	@dbgap@:reads/SRP011999/SRS602030/SRX543390/SRR1791001/SRR1791001.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_2_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288071	@dbgap@:reads/SRP011999/SRS602030/SRX543390/SRR1288071/SRR1288071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPDJM-04A-01R.gene.quantification.txt	3			
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDJM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDJM-04A-01R	RNA	EFO	SRS602030	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDJM-04A-01R A32634 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32634	SRX543390	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDJM-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPDJM-04A-01R A32634 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2251-1./A32634.fastq	SRR1791001	@dbgap@:reads/SRP011999/SRS602030/SRX543390/SRR1791001/SRR1791001.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_2_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288071	@dbgap@:reads/SRP011999/SRS602030/SRX543390/SRR1288071/SRR1288071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPDJM-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDJM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDJM-04A-01R	RNA	EFO	SRS602030	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDJM-04A-01R A32634 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32634	SRX543390	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDJM-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPDJM-04A-01R A32634 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2251-1./A32634.fastq	SRR1791001	@dbgap@:reads/SRP011999/SRS602030/SRX543390/SRR1791001/SRR1791001.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_2_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288071	@dbgap@:reads/SRP011999/SRS602030/SRX543390/SRR1288071/SRR1288071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPDJM-04A-01R.fusion.vcf	3			
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDJM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDJM-04A-01R	RNA	EFO	SRS602030	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDJM-04A-01R A32634 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32634	SRX543390	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDJM-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPDJM-04A-01R A32634 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2251-1./A32634.fastq	SRR1791001	@dbgap@:reads/SRP011999/SRS602030/SRX543390/SRR1791001/SRR1791001.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_2_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288071	@dbgap@:reads/SRP011999/SRS602030/SRX543390/SRR1288071/SRR1288071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPDJM-04A-01R.indel.vcf	3			
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDJM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDJM-04A-01R	RNA	EFO	SRS602030	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDJM-04A-01R A32634 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32634	SRX543390	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDJM-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPDJM-04A-01R A32634 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2251-1./A32634.fastq	SRR1791001	@dbgap@:reads/SRP011999/SRS602030/SRX543390/SRR1791001/SRR1791001.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_2_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288071	@dbgap@:reads/SRP011999/SRS602030/SRX543390/SRR1288071/SRR1288071.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPDJM-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDKJ-09A-01R	RNA	EFO	SRS602151	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDKJ-09A-01R A32775 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32775	SRX547633	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDKJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPDKJ-09A-01R A32775 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2287-1./A32775.fastq	SRR1790991	@dbgap@:reads/SRP011999/SRS602151/SRX547633/SRR1790991/SRR1790991.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_6_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293008	@dbgap@:reads/SRP011999/SRS602151/SRX547633/SRR1293008/SRR1293008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPDKJ-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDKJ-09A-01R	RNA	EFO	SRS602151	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDKJ-09A-01R A32775 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32775	SRX547633	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDKJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPDKJ-09A-01R A32775 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2287-1./A32775.fastq	SRR1790991	@dbgap@:reads/SRP011999/SRS602151/SRX547633/SRR1790991/SRR1790991.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_6_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293008	@dbgap@:reads/SRP011999/SRS602151/SRX547633/SRR1293008/SRR1293008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPDKJ-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDKJ-09A-01R	RNA	EFO	SRS602151	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDKJ-09A-01R A32775 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32775	SRX547633	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDKJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPDKJ-09A-01R A32775 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2287-1./A32775.fastq	SRR1790991	@dbgap@:reads/SRP011999/SRS602151/SRX547633/SRR1790991/SRR1790991.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_6_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293008	@dbgap@:reads/SRP011999/SRS602151/SRX547633/SRR1293008/SRR1293008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPDKJ-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDKJ-09A-01R	RNA	EFO	SRS602151	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDKJ-09A-01R A32775 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32775	SRX547633	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDKJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPDKJ-09A-01R A32775 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2287-1./A32775.fastq	SRR1790991	@dbgap@:reads/SRP011999/SRS602151/SRX547633/SRR1790991/SRR1790991.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_6_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293008	@dbgap@:reads/SRP011999/SRS602151/SRX547633/SRR1293008/SRR1293008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPDKJ-09A-01R.fusion.vcf	3			
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDKJ-09A-01R	RNA	EFO	SRS602151	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDKJ-09A-01R A32775 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32775	SRX547633	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDKJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPDKJ-09A-01R A32775 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2287-1./A32775.fastq	SRR1790991	@dbgap@:reads/SRP011999/SRS602151/SRX547633/SRR1790991/SRR1790991.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_6_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293008	@dbgap@:reads/SRP011999/SRS602151/SRX547633/SRR1293008/SRR1293008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPDKJ-09A-01R.indel.vcf	3			
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDKJ-09A-01R	RNA	EFO	SRS602151	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDKJ-09A-01R A32775 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32775	SRX547633	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDKJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPDKJ-09A-01R A32775 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2287-1./A32775.fastq	SRR1790991	@dbgap@:reads/SRP011999/SRS602151/SRX547633/SRR1790991/SRR1790991.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_6_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293008	@dbgap@:reads/SRP011999/SRS602151/SRX547633/SRR1293008/SRR1293008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPDKJ-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUF-09A-01R	RNA	EFO	SRS602126	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUF-09A-01R A32773 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32773	SRX547591	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDUF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPDUF-09A-01R A32773 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2292-1..1/A32773.fastq	SRR1791048	@dbgap@:reads/SRP011999/SRS602126/SRX547591/SRR1791048/SRR1791048.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_3_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292945	@dbgap@:reads/SRP011999/SRS602126/SRX547591/SRR1292945/SRR1292945.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPDUF-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUF-09A-01R	RNA	EFO	SRS602126	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUF-09A-01R A32773 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32773	SRX547591	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDUF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPDUF-09A-01R A32773 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2292-1..1/A32773.fastq	SRR1791048	@dbgap@:reads/SRP011999/SRS602126/SRX547591/SRR1791048/SRR1791048.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_3_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292945	@dbgap@:reads/SRP011999/SRS602126/SRX547591/SRR1292945/SRR1292945.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPDUF-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUF-09A-01R	RNA	EFO	SRS602126	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUF-09A-01R A32773 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32773	SRX547591	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDUF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPDUF-09A-01R A32773 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2292-1..1/A32773.fastq	SRR1791048	@dbgap@:reads/SRP011999/SRS602126/SRX547591/SRR1791048/SRR1791048.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_3_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292945	@dbgap@:reads/SRP011999/SRS602126/SRX547591/SRR1292945/SRR1292945.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPDUF-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUF-09A-01R	RNA	EFO	SRS602126	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUF-09A-01R A32773 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32773	SRX547591	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDUF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPDUF-09A-01R A32773 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2292-1..1/A32773.fastq	SRR1791048	@dbgap@:reads/SRP011999/SRS602126/SRX547591/SRR1791048/SRR1791048.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_3_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292945	@dbgap@:reads/SRP011999/SRS602126/SRX547591/SRR1292945/SRR1292945.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPDUF-09A-01R.fusion.vcf	3			
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUF-09A-01R	RNA	EFO	SRS602126	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUF-09A-01R A32773 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32773	SRX547591	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDUF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPDUF-09A-01R A32773 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2292-1..1/A32773.fastq	SRR1791048	@dbgap@:reads/SRP011999/SRS602126/SRX547591/SRR1791048/SRR1791048.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_3_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292945	@dbgap@:reads/SRP011999/SRS602126/SRX547591/SRR1292945/SRR1292945.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPDUF-09A-01R.indel.vcf	3			
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUF-09A-01R	RNA	EFO	SRS602126	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUF-09A-01R A32773 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32773	SRX547591	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDUF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPDUF-09A-01R A32773 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2292-1..1/A32773.fastq	SRR1791048	@dbgap@:reads/SRP011999/SRS602126/SRX547591/SRR1791048/SRR1791048.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_3_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292945	@dbgap@:reads/SRP011999/SRS602126/SRX547591/SRR1292945/SRR1292945.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPDUF-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-01R	RNA	EFO	SRS602090	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-01R A32638 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32638	SRX543427	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDUV-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPDUV-04A-01R A32638 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2224-1./A32638.fastq	SRR1790988	@dbgap@:reads/SRP011999/SRS602090/SRX543427/SRR1790988/SRR1790988.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_5_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288082	@dbgap@:reads/SRP011999/SRS602090/SRX543427/SRR1288082/SRR1288082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPDUV-04A-01R.exon.quantification.txt	3			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-01R	RNA	EFO	SRS602090	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-01R A32638 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32638	SRX543427	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDUV-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPDUV-04A-01R A32638 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2224-1./A32638.fastq	SRR1790988	@dbgap@:reads/SRP011999/SRS602090/SRX543427/SRR1790988/SRR1790988.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_5_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288082	@dbgap@:reads/SRP011999/SRS602090/SRX543427/SRR1288082/SRR1288082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPDUV-04A-01R.gene.quantification.txt	3			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-01R	RNA	EFO	SRS602090	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-01R A32638 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32638	SRX543427	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDUV-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPDUV-04A-01R A32638 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2224-1./A32638.fastq	SRR1790988	@dbgap@:reads/SRP011999/SRS602090/SRX543427/SRR1790988/SRR1790988.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_5_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288082	@dbgap@:reads/SRP011999/SRS602090/SRX543427/SRR1288082/SRR1288082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPDUV-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-01R	RNA	EFO	SRS602090	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-01R A32638 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32638	SRX543427	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDUV-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPDUV-04A-01R A32638 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2224-1./A32638.fastq	SRR1790988	@dbgap@:reads/SRP011999/SRS602090/SRX543427/SRR1790988/SRR1790988.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_5_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288082	@dbgap@:reads/SRP011999/SRS602090/SRX543427/SRR1288082/SRR1288082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPDUV-04A-01R.fusion.vcf	3			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-01R	RNA	EFO	SRS602090	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-01R A32638 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32638	SRX543427	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDUV-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPDUV-04A-01R A32638 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2224-1./A32638.fastq	SRR1790988	@dbgap@:reads/SRP011999/SRS602090/SRX543427/SRR1790988/SRR1790988.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_5_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288082	@dbgap@:reads/SRP011999/SRS602090/SRX543427/SRR1288082/SRR1288082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPDUV-04A-01R.indel.vcf	3			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-01R	RNA	EFO	SRS602090	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-01R A32638 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32638	SRX543427	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDUV-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPDUV-04A-01R A32638 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2224-1./A32638.fastq	SRR1790988	@dbgap@:reads/SRP011999/SRS602090/SRX543427/SRR1790988/SRR1790988.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_5_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288082	@dbgap@:reads/SRP011999/SRS602090/SRX543427/SRR1288082/SRR1288082.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPDUV-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-02R	RNA	EFO	SRS2416202	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-02R A61064 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61064	SRX3073867	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDUV-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPDUV-04A-02R A61064 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4508-1./A61064.fastq	SRR5912874	@dbgap@:reads/SRP011999/SRS2416202/SRX3073867/SRR5912874/SRR5912874.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPDUV-04A-02R.exon.quantification.txt	3			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-02R	RNA	EFO	SRS2416202	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-02R A61064 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61064	SRX3073867	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDUV-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPDUV-04A-02R A61064 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4508-1./A61064.fastq	SRR5912874	@dbgap@:reads/SRP011999/SRS2416202/SRX3073867/SRR5912874/SRR5912874.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPDUV-04A-02R.gene.quantification.txt	3			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-02R	RNA	EFO	SRS2416202	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-02R A61064 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61064	SRX3073867	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDUV-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPDUV-04A-02R A61064 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4508-1./A61064.fastq	SRR5912874	@dbgap@:reads/SRP011999/SRS2416202/SRX3073867/SRR5912874/SRR5912874.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPDUV-04A-02R.isoform.quantification.txt	3			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-02R	RNA	EFO	SRS2416202	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-02R A61064 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61064	SRX3073867	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDUV-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPDUV-04A-02R A61064 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4508-1./A61064.fastq	SRR5912874	@dbgap@:reads/SRP011999/SRS2416202/SRX3073867/SRR5912874/SRR5912874.sra	1								bcgsc.ca:Protocol:mRNAseq-Fusion-DeFuse:01		TARGET-10-PAPDUV-04A-02R.results.filtered.tsv	3			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-02R	RNA	EFO	SRS2416202	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-02R A61064 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61064	SRX3073867	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDUV-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPDUV-04A-02R A61064 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4508-1./A61064.fastq	SRR5912874	@dbgap@:reads/SRP011999/SRS2416202/SRX3073867/SRR5912874/SRR5912874.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPDUV-04A-02R.fusion.vcf	3			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-02R	RNA	EFO	SRS2416202	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-02R A61064 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61064	SRX3073867	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDUV-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPDUV-04A-02R A61064 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4508-1./A61064.fastq	SRR5912874	@dbgap@:reads/SRP011999/SRS2416202/SRX3073867/SRR5912874/SRR5912874.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPDUV-04A-02R.indel.vcf	3			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-02R	RNA	EFO	SRS2416202	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-04A-02R A61064 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61064	SRX3073867	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDUV-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPDUV-04A-02R A61064 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4508-1./A61064.fastq	SRR5912874	@dbgap@:reads/SRP011999/SRS2416202/SRX3073867/SRR5912874/SRR5912874.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-10-PAPDUV-04A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Tab:01	TARGET-10-PAPDUV-04A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-09A-02R	RNA	EFO	SRS602235	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-09A-02R A33597 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33597	SRX547689	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDUV-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPDUV-09A-02R A33597 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2191-1./A33597.fastq	SRR1791077	@dbgap@:reads/SRP011999/SRS602235/SRX547689/SRR1791077/SRR1791077.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_7_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293036	@dbgap@:reads/SRP011999/SRS602235/SRX547689/SRR1293036/SRR1293036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPDUV-09A-02R.exon.quantification.txt	3			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-09A-02R	RNA	EFO	SRS602235	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-09A-02R A33597 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33597	SRX547689	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDUV-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPDUV-09A-02R A33597 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2191-1./A33597.fastq	SRR1791077	@dbgap@:reads/SRP011999/SRS602235/SRX547689/SRR1791077/SRR1791077.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_7_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293036	@dbgap@:reads/SRP011999/SRS602235/SRX547689/SRR1293036/SRR1293036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPDUV-09A-02R.gene.quantification.txt	3			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-09A-02R	RNA	EFO	SRS602235	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-09A-02R A33597 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33597	SRX547689	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDUV-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPDUV-09A-02R A33597 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2191-1./A33597.fastq	SRR1791077	@dbgap@:reads/SRP011999/SRS602235/SRX547689/SRR1791077/SRR1791077.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_7_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293036	@dbgap@:reads/SRP011999/SRS602235/SRX547689/SRR1293036/SRR1293036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPDUV-09A-02R.isoform.quantification.txt	3			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-09A-02R	RNA	EFO	SRS602235	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-09A-02R A33597 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33597	SRX547689	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDUV-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPDUV-09A-02R A33597 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2191-1./A33597.fastq	SRR1791077	@dbgap@:reads/SRP011999/SRS602235/SRX547689/SRR1791077/SRR1791077.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_7_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293036	@dbgap@:reads/SRP011999/SRS602235/SRX547689/SRR1293036/SRR1293036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPDUV-09A-02R.fusion.vcf	3			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-09A-02R	RNA	EFO	SRS602235	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-09A-02R A33597 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33597	SRX547689	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDUV-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPDUV-09A-02R A33597 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2191-1./A33597.fastq	SRR1791077	@dbgap@:reads/SRP011999/SRS602235/SRX547689/SRR1791077/SRR1791077.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_7_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293036	@dbgap@:reads/SRP011999/SRS602235/SRX547689/SRR1293036/SRR1293036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPDUV-09A-02R.indel.vcf	3			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-09A-02R	RNA	EFO	SRS602235	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDUV-09A-02R A33597 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33597	SRX547689	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDUV-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPDUV-09A-02R A33597 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2191-1./A33597.fastq	SRR1791077	@dbgap@:reads/SRP011999/SRS602235/SRX547689/SRR1791077/SRR1791077.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_7_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293036	@dbgap@:reads/SRP011999/SRS602235/SRX547689/SRR1293036/SRR1293036.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPDUV-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDWT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDWT-04A-01R	RNA	EFO	SRS602121	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDWT-04A-01R A32755 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32755	SRX547592	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDWT-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPDWT-04A-01R A32755 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2291-1..1/A32755.fastq	SRR1791057	@dbgap@:reads/SRP011999/SRS602121/SRX547592/SRR1791057/SRR1791057.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_2_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292980	@dbgap@:reads/SRP011999/SRS602121/SRX547592/SRR1292980/SRR1292980.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPDWT-04A-01R.exon.quantification.txt	3			
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDWT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDWT-04A-01R	RNA	EFO	SRS602121	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDWT-04A-01R A32755 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32755	SRX547592	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDWT-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPDWT-04A-01R A32755 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2291-1..1/A32755.fastq	SRR1791057	@dbgap@:reads/SRP011999/SRS602121/SRX547592/SRR1791057/SRR1791057.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_2_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292980	@dbgap@:reads/SRP011999/SRS602121/SRX547592/SRR1292980/SRR1292980.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPDWT-04A-01R.gene.quantification.txt	3			
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDWT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDWT-04A-01R	RNA	EFO	SRS602121	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDWT-04A-01R A32755 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32755	SRX547592	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDWT-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPDWT-04A-01R A32755 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2291-1..1/A32755.fastq	SRR1791057	@dbgap@:reads/SRP011999/SRS602121/SRX547592/SRR1791057/SRR1791057.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_2_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292980	@dbgap@:reads/SRP011999/SRS602121/SRX547592/SRR1292980/SRR1292980.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPDWT-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDWT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDWT-04A-01R	RNA	EFO	SRS602121	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDWT-04A-01R A32755 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32755	SRX547592	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDWT-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPDWT-04A-01R A32755 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2291-1..1/A32755.fastq	SRR1791057	@dbgap@:reads/SRP011999/SRS602121/SRX547592/SRR1791057/SRR1791057.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_2_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292980	@dbgap@:reads/SRP011999/SRS602121/SRX547592/SRR1292980/SRR1292980.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPDWT-04A-01R.fusion.vcf	3			
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDWT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDWT-04A-01R	RNA	EFO	SRS602121	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDWT-04A-01R A32755 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32755	SRX547592	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDWT-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPDWT-04A-01R A32755 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2291-1..1/A32755.fastq	SRR1791057	@dbgap@:reads/SRP011999/SRS602121/SRX547592/SRR1791057/SRR1791057.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_2_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292980	@dbgap@:reads/SRP011999/SRS602121/SRX547592/SRR1292980/SRR1292980.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPDWT-04A-01R.indel.vcf	3			
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDWT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDWT-04A-01R	RNA	EFO	SRS602121	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPDWT-04A-01R A32755 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32755	SRX547592	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPDWT-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPDWT-04A-01R A32755 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2291-1..1/A32755.fastq	SRR1791057	@dbgap@:reads/SRP011999/SRS602121/SRX547592/SRR1791057/SRR1791057.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_2_CACTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292980	@dbgap@:reads/SRP011999/SRS602121/SRX547592/SRR1292980/SRR1292980.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPDWT-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEAB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEAB-04A-01R	RNA	EFO	SRS602142	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEAB-04A-01R A32772 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32772	SRX547588	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEAB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPEAB-04A-01R A32772 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2271-1./A32772.fastq	SRR1791058	@dbgap@:reads/SRP011999/SRS602142/SRX547588/SRR1791058/SRR1791058.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_6_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292997	@dbgap@:reads/SRP011999/SRS602142/SRX547588/SRR1292997/SRR1292997.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPEAB-04A-01R.exon.quantification.txt	3			
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEAB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEAB-04A-01R	RNA	EFO	SRS602142	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEAB-04A-01R A32772 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32772	SRX547588	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEAB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPEAB-04A-01R A32772 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2271-1./A32772.fastq	SRR1791058	@dbgap@:reads/SRP011999/SRS602142/SRX547588/SRR1791058/SRR1791058.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_6_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292997	@dbgap@:reads/SRP011999/SRS602142/SRX547588/SRR1292997/SRR1292997.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPEAB-04A-01R.gene.quantification.txt	3			
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEAB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEAB-04A-01R	RNA	EFO	SRS602142	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEAB-04A-01R A32772 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32772	SRX547588	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEAB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPEAB-04A-01R A32772 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2271-1./A32772.fastq	SRR1791058	@dbgap@:reads/SRP011999/SRS602142/SRX547588/SRR1791058/SRR1791058.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_6_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292997	@dbgap@:reads/SRP011999/SRS602142/SRX547588/SRR1292997/SRR1292997.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPEAB-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEAB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEAB-04A-01R	RNA	EFO	SRS602142	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEAB-04A-01R A32772 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32772	SRX547588	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEAB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPEAB-04A-01R A32772 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2271-1./A32772.fastq	SRR1791058	@dbgap@:reads/SRP011999/SRS602142/SRX547588/SRR1791058/SRR1791058.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_6_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292997	@dbgap@:reads/SRP011999/SRS602142/SRX547588/SRR1292997/SRR1292997.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPEAB-04A-01R.fusion.vcf	3			
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEAB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEAB-04A-01R	RNA	EFO	SRS602142	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEAB-04A-01R A32772 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32772	SRX547588	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEAB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPEAB-04A-01R A32772 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2271-1./A32772.fastq	SRR1791058	@dbgap@:reads/SRP011999/SRS602142/SRX547588/SRR1791058/SRR1791058.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_6_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292997	@dbgap@:reads/SRP011999/SRS602142/SRX547588/SRR1292997/SRR1292997.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPEAB-04A-01R.indel.vcf	3			
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEAB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEAB-04A-01R	RNA	EFO	SRS602142	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEAB-04A-01R A32772 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32772	SRX547588	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEAB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPEAB-04A-01R A32772 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2271-1./A32772.fastq	SRR1791058	@dbgap@:reads/SRP011999/SRS602142/SRX547588/SRR1791058/SRR1791058.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_6_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292997	@dbgap@:reads/SRP011999/SRS602142/SRX547588/SRR1292997/SRR1292997.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPEAB-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPECF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPECF-04A-01R	RNA	EFO	SRS602139	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPECF-04A-01R A32759 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32759	SRX547622	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPECF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPECF-04A-01R A32759 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2270-1./A32759.fastq	SRR1791016	@dbgap@:reads/SRP011999/SRS602139/SRX547622/SRR1791016/SRR1791016.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_5_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292990	@dbgap@:reads/SRP011999/SRS602139/SRX547622/SRR1292990/SRR1292990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPECF-04A-01R.exon.quantification.txt	3			
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPECF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPECF-04A-01R	RNA	EFO	SRS602139	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPECF-04A-01R A32759 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32759	SRX547622	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPECF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPECF-04A-01R A32759 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2270-1./A32759.fastq	SRR1791016	@dbgap@:reads/SRP011999/SRS602139/SRX547622/SRR1791016/SRR1791016.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_5_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292990	@dbgap@:reads/SRP011999/SRS602139/SRX547622/SRR1292990/SRR1292990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPECF-04A-01R.gene.quantification.txt	3			
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPECF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPECF-04A-01R	RNA	EFO	SRS602139	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPECF-04A-01R A32759 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32759	SRX547622	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPECF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPECF-04A-01R A32759 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2270-1./A32759.fastq	SRR1791016	@dbgap@:reads/SRP011999/SRS602139/SRX547622/SRR1791016/SRR1791016.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_5_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292990	@dbgap@:reads/SRP011999/SRS602139/SRX547622/SRR1292990/SRR1292990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPECF-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPECF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPECF-04A-01R	RNA	EFO	SRS602139	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPECF-04A-01R A32759 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32759	SRX547622	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPECF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPECF-04A-01R A32759 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2270-1./A32759.fastq	SRR1791016	@dbgap@:reads/SRP011999/SRS602139/SRX547622/SRR1791016/SRR1791016.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_5_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292990	@dbgap@:reads/SRP011999/SRS602139/SRX547622/SRR1292990/SRR1292990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPECF-04A-01R.fusion.vcf	3			
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPECF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPECF-04A-01R	RNA	EFO	SRS602139	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPECF-04A-01R A32759 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32759	SRX547622	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPECF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPECF-04A-01R A32759 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2270-1./A32759.fastq	SRR1791016	@dbgap@:reads/SRP011999/SRS602139/SRX547622/SRR1791016/SRR1791016.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_5_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292990	@dbgap@:reads/SRP011999/SRS602139/SRX547622/SRR1292990/SRR1292990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPECF-04A-01R.indel.vcf	3			
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPECF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPECF-04A-01R	RNA	EFO	SRS602139	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPECF-04A-01R A32759 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32759	SRX547622	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPECF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPECF-04A-01R A32759 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2270-1./A32759.fastq	SRR1791016	@dbgap@:reads/SRP011999/SRS602139/SRX547622/SRR1791016/SRR1791016.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_5_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292990	@dbgap@:reads/SRP011999/SRS602139/SRX547622/SRR1292990/SRR1292990.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPECF-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPECF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPECF-09A-01R	RNA	EFO	SRS602117	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPECF-09A-01R A32760 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32760	SRX547614	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPECF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPECF-09A-01R A32760 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2268-1./A32760.fastq	SRR1791076	@dbgap@:reads/SRP011999/SRS602117/SRX547614/SRR1791076/SRR1791076.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed bases < 5Gb, genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_3_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292946	@dbgap@:reads/SRP011999/SRS602117/SRX547614/SRR1292946/SRR1292946.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPECF-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPECF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPECF-09A-01R	RNA	EFO	SRS602117	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPECF-09A-01R A32760 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32760	SRX547614	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPECF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPECF-09A-01R A32760 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2268-1./A32760.fastq	SRR1791076	@dbgap@:reads/SRP011999/SRS602117/SRX547614/SRR1791076/SRR1791076.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed bases < 5Gb, genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_3_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292946	@dbgap@:reads/SRP011999/SRS602117/SRX547614/SRR1292946/SRR1292946.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPECF-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPECF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPECF-09A-01R	RNA	EFO	SRS602117	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPECF-09A-01R A32760 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32760	SRX547614	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPECF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPECF-09A-01R A32760 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2268-1./A32760.fastq	SRR1791076	@dbgap@:reads/SRP011999/SRS602117/SRX547614/SRR1791076/SRR1791076.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed bases < 5Gb, genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_3_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292946	@dbgap@:reads/SRP011999/SRS602117/SRX547614/SRR1292946/SRR1292946.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPECF-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPECF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPECF-09A-01R	RNA	EFO	SRS602117	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPECF-09A-01R A32760 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32760	SRX547614	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPECF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPECF-09A-01R A32760 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2268-1./A32760.fastq	SRR1791076	@dbgap@:reads/SRP011999/SRS602117/SRX547614/SRR1791076/SRR1791076.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed bases < 5Gb, genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_3_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292946	@dbgap@:reads/SRP011999/SRS602117/SRX547614/SRR1292946/SRR1292946.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPECF-09A-01R.fusion.vcf	3			
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPECF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPECF-09A-01R	RNA	EFO	SRS602117	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPECF-09A-01R A32760 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32760	SRX547614	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPECF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPECF-09A-01R A32760 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2268-1./A32760.fastq	SRR1791076	@dbgap@:reads/SRP011999/SRS602117/SRX547614/SRR1791076/SRR1791076.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed bases < 5Gb, genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_3_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292946	@dbgap@:reads/SRP011999/SRS602117/SRX547614/SRR1292946/SRR1292946.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPECF-09A-01R.indel.vcf	3			
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPECF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPECF-09A-01R	RNA	EFO	SRS602117	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPECF-09A-01R A32760 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32760	SRX547614	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPECF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPECF-09A-01R A32760 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2268-1./A32760.fastq	SRR1791076	@dbgap@:reads/SRP011999/SRS602117/SRX547614/SRR1791076/SRR1791076.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed bases < 5Gb, genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_3_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292946	@dbgap@:reads/SRP011999/SRS602117/SRX547614/SRR1292946/SRR1292946.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPECF-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEFH-04A-01R	RNA	EFO	SRS602080	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEFH-04A-01R A32635 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32635	SRX543439	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEFH-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPEFH-04A-01R A32635 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2252-1./A32635.fastq	SRR1791094	@dbgap@:reads/SRP011999/SRS602080/SRX543439/SRR1791094/SRR1791094.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_3_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288048	@dbgap@:reads/SRP011999/SRS602080/SRX543439/SRR1288048/SRR1288048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPEFH-04A-01R.exon.quantification.txt	3			
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEFH-04A-01R	RNA	EFO	SRS602080	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEFH-04A-01R A32635 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32635	SRX543439	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEFH-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPEFH-04A-01R A32635 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2252-1./A32635.fastq	SRR1791094	@dbgap@:reads/SRP011999/SRS602080/SRX543439/SRR1791094/SRR1791094.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_3_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288048	@dbgap@:reads/SRP011999/SRS602080/SRX543439/SRR1288048/SRR1288048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPEFH-04A-01R.gene.quantification.txt	3			
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEFH-04A-01R	RNA	EFO	SRS602080	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEFH-04A-01R A32635 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32635	SRX543439	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEFH-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPEFH-04A-01R A32635 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2252-1./A32635.fastq	SRR1791094	@dbgap@:reads/SRP011999/SRS602080/SRX543439/SRR1791094/SRR1791094.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_3_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288048	@dbgap@:reads/SRP011999/SRS602080/SRX543439/SRR1288048/SRR1288048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPEFH-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEFH-04A-01R	RNA	EFO	SRS602080	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEFH-04A-01R A32635 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32635	SRX543439	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEFH-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPEFH-04A-01R A32635 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2252-1./A32635.fastq	SRR1791094	@dbgap@:reads/SRP011999/SRS602080/SRX543439/SRR1791094/SRR1791094.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_3_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288048	@dbgap@:reads/SRP011999/SRS602080/SRX543439/SRR1288048/SRR1288048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPEFH-04A-01R.fusion.vcf	3			
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEFH-04A-01R	RNA	EFO	SRS602080	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEFH-04A-01R A32635 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32635	SRX543439	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEFH-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPEFH-04A-01R A32635 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2252-1./A32635.fastq	SRR1791094	@dbgap@:reads/SRP011999/SRS602080/SRX543439/SRR1791094/SRR1791094.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_3_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288048	@dbgap@:reads/SRP011999/SRS602080/SRX543439/SRR1288048/SRR1288048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPEFH-04A-01R.indel.vcf	3			
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEFH-04A-01R	RNA	EFO	SRS602080	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEFH-04A-01R A32635 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32635	SRX543439	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEFH-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPEFH-04A-01R A32635 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2252-1./A32635.fastq	SRR1791094	@dbgap@:reads/SRP011999/SRS602080/SRX543439/SRR1791094/SRR1791094.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_3_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288048	@dbgap@:reads/SRP011999/SRS602080/SRX543439/SRR1288048/SRR1288048.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPEFH-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEFH-09A-01R	RNA	EFO	SRS602092	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEFH-09A-01R A32636 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32636	SRX543412	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEFH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPEFH-09A-01R A32636 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2247-1./A32636.fastq	SRR1791013	@dbgap@:reads/SRP011999/SRS602092/SRX543412/SRR1791013/SRR1791013.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_6_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288026	@dbgap@:reads/SRP011999/SRS602092/SRX543412/SRR1288026/SRR1288026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPEFH-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEFH-09A-01R	RNA	EFO	SRS602092	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEFH-09A-01R A32636 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32636	SRX543412	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEFH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPEFH-09A-01R A32636 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2247-1./A32636.fastq	SRR1791013	@dbgap@:reads/SRP011999/SRS602092/SRX543412/SRR1791013/SRR1791013.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_6_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288026	@dbgap@:reads/SRP011999/SRS602092/SRX543412/SRR1288026/SRR1288026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPEFH-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEFH-09A-01R	RNA	EFO	SRS602092	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEFH-09A-01R A32636 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32636	SRX543412	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEFH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPEFH-09A-01R A32636 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2247-1./A32636.fastq	SRR1791013	@dbgap@:reads/SRP011999/SRS602092/SRX543412/SRR1791013/SRR1791013.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_6_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288026	@dbgap@:reads/SRP011999/SRS602092/SRX543412/SRR1288026/SRR1288026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPEFH-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEFH-09A-01R	RNA	EFO	SRS602092	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEFH-09A-01R A32636 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32636	SRX543412	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEFH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPEFH-09A-01R A32636 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2247-1./A32636.fastq	SRR1791013	@dbgap@:reads/SRP011999/SRS602092/SRX543412/SRR1791013/SRR1791013.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_6_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288026	@dbgap@:reads/SRP011999/SRS602092/SRX543412/SRR1288026/SRR1288026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPEFH-09A-01R.fusion.vcf	3			
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEFH-09A-01R	RNA	EFO	SRS602092	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEFH-09A-01R A32636 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32636	SRX543412	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEFH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPEFH-09A-01R A32636 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2247-1./A32636.fastq	SRR1791013	@dbgap@:reads/SRP011999/SRS602092/SRX543412/SRR1791013/SRR1791013.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_6_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288026	@dbgap@:reads/SRP011999/SRS602092/SRX543412/SRR1288026/SRR1288026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPEFH-09A-01R.indel.vcf	3			
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEFH-09A-01R	RNA	EFO	SRS602092	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEFH-09A-01R A32636 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32636	SRX543412	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEFH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPEFH-09A-01R A32636 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2247-1./A32636.fastq	SRR1791013	@dbgap@:reads/SRP011999/SRS602092/SRX543412/SRR1791013/SRR1791013.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_6_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288026	@dbgap@:reads/SRP011999/SRS602092/SRX543412/SRR1288026/SRR1288026.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPEFH-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEJN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEJN-04A-01R	RNA	EFO	SRS602174	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEJN-04A-01R A32739 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32739	SRX547586	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEJN-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPEJN-04A-01R A32739 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2282-1./A32739.fastq	SRR1791010	@dbgap@:reads/SRP011999/SRS602174/SRX547586/SRR1791010/SRR1791010.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_1_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292971	@dbgap@:reads/SRP011999/SRS602174/SRX547586/SRR1292971/SRR1292971.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPEJN-04A-01R.exon.quantification.txt	3			
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEJN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEJN-04A-01R	RNA	EFO	SRS602174	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEJN-04A-01R A32739 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32739	SRX547586	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEJN-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPEJN-04A-01R A32739 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2282-1./A32739.fastq	SRR1791010	@dbgap@:reads/SRP011999/SRS602174/SRX547586/SRR1791010/SRR1791010.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_1_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292971	@dbgap@:reads/SRP011999/SRS602174/SRX547586/SRR1292971/SRR1292971.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPEJN-04A-01R.gene.quantification.txt	3			
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEJN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEJN-04A-01R	RNA	EFO	SRS602174	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEJN-04A-01R A32739 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32739	SRX547586	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEJN-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPEJN-04A-01R A32739 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2282-1./A32739.fastq	SRR1791010	@dbgap@:reads/SRP011999/SRS602174/SRX547586/SRR1791010/SRR1791010.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_1_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292971	@dbgap@:reads/SRP011999/SRS602174/SRX547586/SRR1292971/SRR1292971.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPEJN-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEJN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEJN-04A-01R	RNA	EFO	SRS602174	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEJN-04A-01R A32739 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32739	SRX547586	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEJN-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPEJN-04A-01R A32739 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2282-1./A32739.fastq	SRR1791010	@dbgap@:reads/SRP011999/SRS602174/SRX547586/SRR1791010/SRR1791010.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_1_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292971	@dbgap@:reads/SRP011999/SRS602174/SRX547586/SRR1292971/SRR1292971.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPEJN-04A-01R.fusion.vcf	3			
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEJN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEJN-04A-01R	RNA	EFO	SRS602174	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEJN-04A-01R A32739 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32739	SRX547586	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEJN-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPEJN-04A-01R A32739 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2282-1./A32739.fastq	SRR1791010	@dbgap@:reads/SRP011999/SRS602174/SRX547586/SRR1791010/SRR1791010.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_1_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292971	@dbgap@:reads/SRP011999/SRS602174/SRX547586/SRR1292971/SRR1292971.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPEJN-04A-01R.indel.vcf	3			
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEJN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEJN-04A-01R	RNA	EFO	SRS602174	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEJN-04A-01R A32739 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32739	SRX547586	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEJN-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPEJN-04A-01R A32739 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2282-1./A32739.fastq	SRR1791010	@dbgap@:reads/SRP011999/SRS602174/SRX547586/SRR1791010/SRR1791010.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_1_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292971	@dbgap@:reads/SRP011999/SRS602174/SRX547586/SRR1292971/SRR1292971.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPEJN-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEJN-09A-01R	RNA	EFO	SRS602187	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEJN-09A-01R A32740 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32740	SRX547607	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEJN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPEJN-09A-01R A32740 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2263-1./A32740.fastq	SRR1791055	@dbgap@:reads/SRP011999/SRS602187/SRX547607/SRR1791055/SRR1791055.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 1)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_5_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293004	@dbgap@:reads/SRP011999/SRS602187/SRX547607/SRR1293004/SRR1293004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPEJN-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEJN-09A-01R	RNA	EFO	SRS602187	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEJN-09A-01R A32740 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32740	SRX547607	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEJN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPEJN-09A-01R A32740 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2263-1./A32740.fastq	SRR1791055	@dbgap@:reads/SRP011999/SRS602187/SRX547607/SRR1791055/SRR1791055.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 1)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_5_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293004	@dbgap@:reads/SRP011999/SRS602187/SRX547607/SRR1293004/SRR1293004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPEJN-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEJN-09A-01R	RNA	EFO	SRS602187	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEJN-09A-01R A32740 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32740	SRX547607	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEJN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPEJN-09A-01R A32740 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2263-1./A32740.fastq	SRR1791055	@dbgap@:reads/SRP011999/SRS602187/SRX547607/SRR1791055/SRR1791055.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 1)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_5_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293004	@dbgap@:reads/SRP011999/SRS602187/SRX547607/SRR1293004/SRR1293004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPEJN-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEJN-09A-01R	RNA	EFO	SRS602187	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEJN-09A-01R A32740 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32740	SRX547607	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEJN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPEJN-09A-01R A32740 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2263-1./A32740.fastq	SRR1791055	@dbgap@:reads/SRP011999/SRS602187/SRX547607/SRR1791055/SRR1791055.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 1)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_5_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293004	@dbgap@:reads/SRP011999/SRS602187/SRX547607/SRR1293004/SRR1293004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPEJN-09A-01R.fusion.vcf	3			
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEJN-09A-01R	RNA	EFO	SRS602187	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEJN-09A-01R A32740 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32740	SRX547607	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEJN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPEJN-09A-01R A32740 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2263-1./A32740.fastq	SRR1791055	@dbgap@:reads/SRP011999/SRS602187/SRX547607/SRR1791055/SRR1791055.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 1)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_5_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293004	@dbgap@:reads/SRP011999/SRS602187/SRX547607/SRR1293004/SRR1293004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPEJN-09A-01R.indel.vcf	3			
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEJN-09A-01R	RNA	EFO	SRS602187	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEJN-09A-01R A32740 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32740	SRX547607	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEJN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPEJN-09A-01R A32740 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2263-1./A32740.fastq	SRR1791055	@dbgap@:reads/SRP011999/SRS602187/SRX547607/SRR1791055/SRR1791055.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 1)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_5_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293004	@dbgap@:reads/SRP011999/SRS602187/SRX547607/SRR1293004/SRR1293004.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPEJN-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPESW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPESW-09A-02R	RNA	EFO	SRS602237	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPESW-09A-02R A33598 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33598	SRX547677	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPESW-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPESW-09A-02R A33598 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2191-1./A33598.fastq	SRR1791003	@dbgap@:reads/SRP011999/SRS602237/SRX547677/SRR1791003/SRR1791003.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_7_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293066	@dbgap@:reads/SRP011999/SRS602237/SRX547677/SRR1293066/SRR1293066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPESW-09A-02R.exon.quantification.txt	3			
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPESW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPESW-09A-02R	RNA	EFO	SRS602237	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPESW-09A-02R A33598 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33598	SRX547677	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPESW-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPESW-09A-02R A33598 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2191-1./A33598.fastq	SRR1791003	@dbgap@:reads/SRP011999/SRS602237/SRX547677/SRR1791003/SRR1791003.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_7_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293066	@dbgap@:reads/SRP011999/SRS602237/SRX547677/SRR1293066/SRR1293066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPESW-09A-02R.gene.quantification.txt	3			
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPESW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPESW-09A-02R	RNA	EFO	SRS602237	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPESW-09A-02R A33598 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33598	SRX547677	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPESW-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPESW-09A-02R A33598 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2191-1./A33598.fastq	SRR1791003	@dbgap@:reads/SRP011999/SRS602237/SRX547677/SRR1791003/SRR1791003.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_7_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293066	@dbgap@:reads/SRP011999/SRS602237/SRX547677/SRR1293066/SRR1293066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPESW-09A-02R.isoform.quantification.txt	3			
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPESW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPESW-09A-02R	RNA	EFO	SRS602237	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPESW-09A-02R A33598 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33598	SRX547677	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPESW-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPESW-09A-02R A33598 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2191-1./A33598.fastq	SRR1791003	@dbgap@:reads/SRP011999/SRS602237/SRX547677/SRR1791003/SRR1791003.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_7_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293066	@dbgap@:reads/SRP011999/SRS602237/SRX547677/SRR1293066/SRR1293066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPESW-09A-02R.fusion.vcf	3			
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPESW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPESW-09A-02R	RNA	EFO	SRS602237	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPESW-09A-02R A33598 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33598	SRX547677	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPESW-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPESW-09A-02R A33598 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2191-1./A33598.fastq	SRR1791003	@dbgap@:reads/SRP011999/SRS602237/SRX547677/SRR1791003/SRR1791003.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_7_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293066	@dbgap@:reads/SRP011999/SRS602237/SRX547677/SRR1293066/SRR1293066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPESW-09A-02R.indel.vcf	3			
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPESW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPESW-09A-02R	RNA	EFO	SRS602237	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPESW-09A-02R A33598 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33598	SRX547677	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPESW-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPESW-09A-02R A33598 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2191-1./A33598.fastq	SRR1791003	@dbgap@:reads/SRP011999/SRS602237/SRX547677/SRR1791003/SRR1791003.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_7_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293066	@dbgap@:reads/SRP011999/SRS602237/SRX547677/SRR1293066/SRR1293066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPESW-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEWB-09A-01R	RNA	EFO	SRS602165	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEWB-09A-01R A32718 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32718	SRX730959	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEWB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPEWB-09A-01R A32718 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2278-1./A32718.fastq	SRR1791081	@dbgap@:reads/SRP011999/SRS602165/SRX730959/SRR1791081/SRR1791081.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_5_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1610446	@dbgap@:reads/SRP011999/SRS602165/SRX730959/SRR1610446/SRR1610446.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPEWB-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEWB-09A-01R	RNA	EFO	SRS602165	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEWB-09A-01R A32718 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32718	SRX730959	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEWB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPEWB-09A-01R A32718 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2278-1./A32718.fastq	SRR1791081	@dbgap@:reads/SRP011999/SRS602165/SRX730959/SRR1791081/SRR1791081.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_5_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1610446	@dbgap@:reads/SRP011999/SRS602165/SRX730959/SRR1610446/SRR1610446.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPEWB-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEWB-09A-01R	RNA	EFO	SRS602165	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEWB-09A-01R A32718 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32718	SRX730959	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEWB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPEWB-09A-01R A32718 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2278-1./A32718.fastq	SRR1791081	@dbgap@:reads/SRP011999/SRS602165/SRX730959/SRR1791081/SRR1791081.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_5_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1610446	@dbgap@:reads/SRP011999/SRS602165/SRX730959/SRR1610446/SRR1610446.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPEWB-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEWB-09A-01R	RNA	EFO	SRS602165	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEWB-09A-01R A32718 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32718	SRX730959	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEWB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPEWB-09A-01R A32718 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2278-1./A32718.fastq	SRR1791081	@dbgap@:reads/SRP011999/SRS602165/SRX730959/SRR1791081/SRR1791081.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_5_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1610446	@dbgap@:reads/SRP011999/SRS602165/SRX730959/SRR1610446/SRR1610446.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPEWB-09A-01R.fusion.vcf	3			
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEWB-09A-01R	RNA	EFO	SRS602165	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEWB-09A-01R A32718 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32718	SRX730959	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEWB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPEWB-09A-01R A32718 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2278-1./A32718.fastq	SRR1791081	@dbgap@:reads/SRP011999/SRS602165/SRX730959/SRR1791081/SRR1791081.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_5_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1610446	@dbgap@:reads/SRP011999/SRS602165/SRX730959/SRR1610446/SRR1610446.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPEWB-09A-01R.indel.vcf	3			
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEWB-09A-01R	RNA	EFO	SRS602165	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPEWB-09A-01R A32718 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32718	SRX730959	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPEWB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPEWB-09A-01R A32718 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2278-1./A32718.fastq	SRR1791081	@dbgap@:reads/SRP011999/SRS602165/SRX730959/SRR1791081/SRR1791081.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_5_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1610446	@dbgap@:reads/SRP011999/SRS602165/SRX730959/SRR1610446/SRR1610446.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPEWB-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPFWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPFWH-09A-01R	RNA	EFO	SRS602172	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPFWH-09A-01R A32719 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32719	SRX547605	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPFWH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-10-PAPFWH-09A-01R A32719 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2576-1./A32719.fastq	SRR1791039	@dbgap@:reads/SRP011999/SRS602172/SRX547605/SRR1791039/SRR1791039.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A32719_1_lane_dupsFlagged.bam	SRR1292995	@dbgap@:reads/SRP011999/SRS602172/SRX547605/SRR1292995/SRR1292995.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPFWH-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPFWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPFWH-09A-01R	RNA	EFO	SRS602172	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPFWH-09A-01R A32719 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32719	SRX547605	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPFWH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-10-PAPFWH-09A-01R A32719 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2576-1./A32719.fastq	SRR1791039	@dbgap@:reads/SRP011999/SRS602172/SRX547605/SRR1791039/SRR1791039.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A32719_1_lane_dupsFlagged.bam	SRR1292995	@dbgap@:reads/SRP011999/SRS602172/SRX547605/SRR1292995/SRR1292995.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPFWH-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPFWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPFWH-09A-01R	RNA	EFO	SRS602172	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPFWH-09A-01R A32719 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32719	SRX547605	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPFWH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-10-PAPFWH-09A-01R A32719 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2576-1./A32719.fastq	SRR1791039	@dbgap@:reads/SRP011999/SRS602172/SRX547605/SRR1791039/SRR1791039.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A32719_1_lane_dupsFlagged.bam	SRR1292995	@dbgap@:reads/SRP011999/SRS602172/SRX547605/SRR1292995/SRR1292995.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPFWH-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPFWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPFWH-09A-01R	RNA	EFO	SRS602172	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPFWH-09A-01R A32719 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32719	SRX547605	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPFWH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-10-PAPFWH-09A-01R A32719 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2576-1./A32719.fastq	SRR1791039	@dbgap@:reads/SRP011999/SRS602172/SRX547605/SRR1791039/SRR1791039.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A32719_1_lane_dupsFlagged.bam	SRR1292995	@dbgap@:reads/SRP011999/SRS602172/SRX547605/SRR1292995/SRR1292995.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPFWH-09A-01R.fusion.vcf	3			
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPFWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPFWH-09A-01R	RNA	EFO	SRS602172	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPFWH-09A-01R A32719 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32719	SRX547605	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPFWH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-10-PAPFWH-09A-01R A32719 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2576-1./A32719.fastq	SRR1791039	@dbgap@:reads/SRP011999/SRS602172/SRX547605/SRR1791039/SRR1791039.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A32719_1_lane_dupsFlagged.bam	SRR1292995	@dbgap@:reads/SRP011999/SRS602172/SRX547605/SRR1292995/SRR1292995.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPFWH-09A-01R.indel.vcf	3			
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPFWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPFWH-09A-01R	RNA	EFO	SRS602172	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPFWH-09A-01R A32719 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32719	SRX547605	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPFWH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-10-PAPFWH-09A-01R A32719 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2576-1./A32719.fastq	SRR1791039	@dbgap@:reads/SRP011999/SRS602172/SRX547605/SRR1791039/SRR1791039.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A32719_1_lane_dupsFlagged.bam	SRR1292995	@dbgap@:reads/SRP011999/SRS602172/SRX547605/SRR1292995/SRR1292995.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPFWH-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPFXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPFXN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPFXN-09A-01R	RNA	EFO	SRS602138	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPFXN-09A-01R A32720 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32720	SRX547630	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPFXN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPFXN-09A-01R A32720 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2289-1./A32720.fastq	SRR1791095	@dbgap@:reads/SRP011999/SRS602138/SRX547630/SRR1791095/SRR1791095.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_8_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293009	@dbgap@:reads/SRP011999/SRS602138/SRX547630/SRR1293009/SRR1293009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPFXN-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPFXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPFXN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPFXN-09A-01R	RNA	EFO	SRS602138	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPFXN-09A-01R A32720 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32720	SRX547630	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPFXN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPFXN-09A-01R A32720 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2289-1./A32720.fastq	SRR1791095	@dbgap@:reads/SRP011999/SRS602138/SRX547630/SRR1791095/SRR1791095.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_8_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293009	@dbgap@:reads/SRP011999/SRS602138/SRX547630/SRR1293009/SRR1293009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPFXN-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPFXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPFXN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPFXN-09A-01R	RNA	EFO	SRS602138	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPFXN-09A-01R A32720 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32720	SRX547630	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPFXN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPFXN-09A-01R A32720 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2289-1./A32720.fastq	SRR1791095	@dbgap@:reads/SRP011999/SRS602138/SRX547630/SRR1791095/SRR1791095.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_8_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293009	@dbgap@:reads/SRP011999/SRS602138/SRX547630/SRR1293009/SRR1293009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPFXN-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPFXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPFXN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPFXN-09A-01R	RNA	EFO	SRS602138	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPFXN-09A-01R A32720 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32720	SRX547630	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPFXN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPFXN-09A-01R A32720 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2289-1./A32720.fastq	SRR1791095	@dbgap@:reads/SRP011999/SRS602138/SRX547630/SRR1791095/SRR1791095.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_8_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293009	@dbgap@:reads/SRP011999/SRS602138/SRX547630/SRR1293009/SRR1293009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPFXN-09A-01R.fusion.vcf	3			
TARGET-10-PAPFXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPFXN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPFXN-09A-01R	RNA	EFO	SRS602138	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPFXN-09A-01R A32720 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32720	SRX547630	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPFXN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPFXN-09A-01R A32720 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2289-1./A32720.fastq	SRR1791095	@dbgap@:reads/SRP011999/SRS602138/SRX547630/SRR1791095/SRR1791095.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_8_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293009	@dbgap@:reads/SRP011999/SRS602138/SRX547630/SRR1293009/SRR1293009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPFXN-09A-01R.indel.vcf	3			
TARGET-10-PAPFXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPFXN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPFXN-09A-01R	RNA	EFO	SRS602138	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPFXN-09A-01R A32720 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32720	SRX547630	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPFXN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPFXN-09A-01R A32720 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2289-1./A32720.fastq	SRR1791095	@dbgap@:reads/SRP011999/SRS602138/SRX547630/SRR1791095/SRR1791095.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_8_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293009	@dbgap@:reads/SRP011999/SRS602138/SRX547630/SRR1293009/SRR1293009.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPFXN-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGFP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGFP-04A-01R	RNA	EFO	SRS602074	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGFP-04A-01R A32662 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32662	SRX543426	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGFP-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPGFP-04A-01R A32662 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2227-1./A32662.fastq	SRR1791045	@dbgap@:reads/SRP011999/SRS602074/SRX543426/SRR1791045/SRR1791045.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_8_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288069	@dbgap@:reads/SRP011999/SRS602074/SRX543426/SRR1288069/SRR1288069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPGFP-04A-01R.exon.quantification.txt	3			
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGFP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGFP-04A-01R	RNA	EFO	SRS602074	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGFP-04A-01R A32662 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32662	SRX543426	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGFP-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPGFP-04A-01R A32662 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2227-1./A32662.fastq	SRR1791045	@dbgap@:reads/SRP011999/SRS602074/SRX543426/SRR1791045/SRR1791045.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_8_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288069	@dbgap@:reads/SRP011999/SRS602074/SRX543426/SRR1288069/SRR1288069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPGFP-04A-01R.gene.quantification.txt	3			
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGFP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGFP-04A-01R	RNA	EFO	SRS602074	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGFP-04A-01R A32662 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32662	SRX543426	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGFP-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPGFP-04A-01R A32662 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2227-1./A32662.fastq	SRR1791045	@dbgap@:reads/SRP011999/SRS602074/SRX543426/SRR1791045/SRR1791045.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_8_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288069	@dbgap@:reads/SRP011999/SRS602074/SRX543426/SRR1288069/SRR1288069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPGFP-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGFP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGFP-04A-01R	RNA	EFO	SRS602074	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGFP-04A-01R A32662 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32662	SRX543426	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGFP-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPGFP-04A-01R A32662 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2227-1./A32662.fastq	SRR1791045	@dbgap@:reads/SRP011999/SRS602074/SRX543426/SRR1791045/SRR1791045.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_8_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288069	@dbgap@:reads/SRP011999/SRS602074/SRX543426/SRR1288069/SRR1288069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPGFP-04A-01R.fusion.vcf	3			
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGFP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGFP-04A-01R	RNA	EFO	SRS602074	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGFP-04A-01R A32662 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32662	SRX543426	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGFP-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPGFP-04A-01R A32662 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2227-1./A32662.fastq	SRR1791045	@dbgap@:reads/SRP011999/SRS602074/SRX543426/SRR1791045/SRR1791045.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_8_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288069	@dbgap@:reads/SRP011999/SRS602074/SRX543426/SRR1288069/SRR1288069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPGFP-04A-01R.indel.vcf	3			
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGFP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGFP-04A-01R	RNA	EFO	SRS602074	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGFP-04A-01R A32662 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32662	SRX543426	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGFP-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPGFP-04A-01R A32662 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2227-1./A32662.fastq	SRR1791045	@dbgap@:reads/SRP011999/SRS602074/SRX543426/SRR1791045/SRR1791045.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_8_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288069	@dbgap@:reads/SRP011999/SRS602074/SRX543426/SRR1288069/SRR1288069.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPGFP-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGFP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGFP-09A-02R	RNA	EFO	SRS602221	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGFP-09A-02R A33600 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33600	SRX547650	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGFP-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPGFP-09A-02R A33600 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2172-1./A33600.fastq	SRR1791009	@dbgap@:reads/SRP011999/SRS602221/SRX547650/SRR1791009/SRR1791009.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_4_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293041	@dbgap@:reads/SRP011999/SRS602221/SRX547650/SRR1293041/SRR1293041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPGFP-09A-02R.exon.quantification.txt	3			
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGFP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGFP-09A-02R	RNA	EFO	SRS602221	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGFP-09A-02R A33600 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33600	SRX547650	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGFP-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPGFP-09A-02R A33600 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2172-1./A33600.fastq	SRR1791009	@dbgap@:reads/SRP011999/SRS602221/SRX547650/SRR1791009/SRR1791009.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_4_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293041	@dbgap@:reads/SRP011999/SRS602221/SRX547650/SRR1293041/SRR1293041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPGFP-09A-02R.gene.quantification.txt	3			
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGFP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGFP-09A-02R	RNA	EFO	SRS602221	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGFP-09A-02R A33600 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33600	SRX547650	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGFP-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPGFP-09A-02R A33600 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2172-1./A33600.fastq	SRR1791009	@dbgap@:reads/SRP011999/SRS602221/SRX547650/SRR1791009/SRR1791009.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_4_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293041	@dbgap@:reads/SRP011999/SRS602221/SRX547650/SRR1293041/SRR1293041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPGFP-09A-02R.isoform.quantification.txt	3			
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGFP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGFP-09A-02R	RNA	EFO	SRS602221	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGFP-09A-02R A33600 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33600	SRX547650	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGFP-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPGFP-09A-02R A33600 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2172-1./A33600.fastq	SRR1791009	@dbgap@:reads/SRP011999/SRS602221/SRX547650/SRR1791009/SRR1791009.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_4_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293041	@dbgap@:reads/SRP011999/SRS602221/SRX547650/SRR1293041/SRR1293041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPGFP-09A-02R.fusion.vcf	3			
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGFP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGFP-09A-02R	RNA	EFO	SRS602221	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGFP-09A-02R A33600 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33600	SRX547650	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGFP-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPGFP-09A-02R A33600 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2172-1./A33600.fastq	SRR1791009	@dbgap@:reads/SRP011999/SRS602221/SRX547650/SRR1791009/SRR1791009.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_4_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293041	@dbgap@:reads/SRP011999/SRS602221/SRX547650/SRR1293041/SRR1293041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPGFP-09A-02R.indel.vcf	3			
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGFP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGFP-09A-02R	RNA	EFO	SRS602221	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGFP-09A-02R A33600 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33600	SRX547650	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGFP-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPGFP-09A-02R A33600 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2172-1./A33600.fastq	SRR1791009	@dbgap@:reads/SRP011999/SRS602221/SRX547650/SRR1791009/SRR1791009.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_4_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293041	@dbgap@:reads/SRP011999/SRS602221/SRX547650/SRR1293041/SRR1293041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPGFP-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPGGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGGT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGGT-03A-01R	RNA	EFO	SRS602115	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGGT-03A-01R A32728 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32728	SRX547570	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGGT-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPGGT-03A-01R A32728 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2267-1./A32728.fastq	SRR1791020	@dbgap@:reads/SRP011999/SRS602115/SRX547570/SRR1791020/SRR1791020.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_2_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292985	@dbgap@:reads/SRP011999/SRS602115/SRX547570/SRR1292985/SRR1292985.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPGGT-03A-01R.exon.quantification.txt	3			
TARGET-10-PAPGGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGGT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGGT-03A-01R	RNA	EFO	SRS602115	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGGT-03A-01R A32728 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32728	SRX547570	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGGT-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPGGT-03A-01R A32728 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2267-1./A32728.fastq	SRR1791020	@dbgap@:reads/SRP011999/SRS602115/SRX547570/SRR1791020/SRR1791020.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_2_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292985	@dbgap@:reads/SRP011999/SRS602115/SRX547570/SRR1292985/SRR1292985.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPGGT-03A-01R.gene.quantification.txt	3			
TARGET-10-PAPGGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGGT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGGT-03A-01R	RNA	EFO	SRS602115	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGGT-03A-01R A32728 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32728	SRX547570	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGGT-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPGGT-03A-01R A32728 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2267-1./A32728.fastq	SRR1791020	@dbgap@:reads/SRP011999/SRS602115/SRX547570/SRR1791020/SRR1791020.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_2_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292985	@dbgap@:reads/SRP011999/SRS602115/SRX547570/SRR1292985/SRR1292985.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPGGT-03A-01R.isoform.quantification.txt	3			
TARGET-10-PAPGGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGGT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGGT-03A-01R	RNA	EFO	SRS602115	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGGT-03A-01R A32728 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32728	SRX547570	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGGT-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPGGT-03A-01R A32728 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2267-1./A32728.fastq	SRR1791020	@dbgap@:reads/SRP011999/SRS602115/SRX547570/SRR1791020/SRR1791020.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_2_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292985	@dbgap@:reads/SRP011999/SRS602115/SRX547570/SRR1292985/SRR1292985.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPGGT-03A-01R.fusion.vcf	3			
TARGET-10-PAPGGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGGT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGGT-03A-01R	RNA	EFO	SRS602115	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGGT-03A-01R A32728 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32728	SRX547570	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGGT-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPGGT-03A-01R A32728 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2267-1./A32728.fastq	SRR1791020	@dbgap@:reads/SRP011999/SRS602115/SRX547570/SRR1791020/SRR1791020.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_2_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292985	@dbgap@:reads/SRP011999/SRS602115/SRX547570/SRR1292985/SRR1292985.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPGGT-03A-01R.indel.vcf	3			
TARGET-10-PAPGGT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGGT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGGT-03A-01R	RNA	EFO	SRS602115	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGGT-03A-01R A32728 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32728	SRX547570	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGGT-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPGGT-03A-01R A32728 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2267-1./A32728.fastq	SRR1791020	@dbgap@:reads/SRP011999/SRS602115/SRX547570/SRR1791020/SRR1791020.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_2_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292985	@dbgap@:reads/SRP011999/SRS602115/SRX547570/SRR1292985/SRR1292985.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPGGT-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGNC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGNC-03A-02R	RNA	EFO	SRS602202	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGNC-03A-02R A33588 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33588	SRX547682	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGNC-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPGNC-03A-02R A33588 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2161-1./A33588.fastq	SRR1791091	@dbgap@:reads/SRP011999/SRS602202/SRX547682/SRR1791091/SRR1791091.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_1_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293035	@dbgap@:reads/SRP011999/SRS602202/SRX547682/SRR1293035/SRR1293035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPGNC-03A-02R.exon.quantification.txt	3			
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGNC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGNC-03A-02R	RNA	EFO	SRS602202	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGNC-03A-02R A33588 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33588	SRX547682	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGNC-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPGNC-03A-02R A33588 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2161-1./A33588.fastq	SRR1791091	@dbgap@:reads/SRP011999/SRS602202/SRX547682/SRR1791091/SRR1791091.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_1_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293035	@dbgap@:reads/SRP011999/SRS602202/SRX547682/SRR1293035/SRR1293035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPGNC-03A-02R.gene.quantification.txt	3			
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGNC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGNC-03A-02R	RNA	EFO	SRS602202	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGNC-03A-02R A33588 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33588	SRX547682	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGNC-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPGNC-03A-02R A33588 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2161-1./A33588.fastq	SRR1791091	@dbgap@:reads/SRP011999/SRS602202/SRX547682/SRR1791091/SRR1791091.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_1_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293035	@dbgap@:reads/SRP011999/SRS602202/SRX547682/SRR1293035/SRR1293035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPGNC-03A-02R.isoform.quantification.txt	3			
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGNC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGNC-03A-02R	RNA	EFO	SRS602202	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGNC-03A-02R A33588 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33588	SRX547682	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGNC-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPGNC-03A-02R A33588 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2161-1./A33588.fastq	SRR1791091	@dbgap@:reads/SRP011999/SRS602202/SRX547682/SRR1791091/SRR1791091.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_1_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293035	@dbgap@:reads/SRP011999/SRS602202/SRX547682/SRR1293035/SRR1293035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPGNC-03A-02R.fusion.vcf	3			
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGNC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGNC-03A-02R	RNA	EFO	SRS602202	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGNC-03A-02R A33588 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33588	SRX547682	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGNC-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPGNC-03A-02R A33588 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2161-1./A33588.fastq	SRR1791091	@dbgap@:reads/SRP011999/SRS602202/SRX547682/SRR1791091/SRR1791091.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_1_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293035	@dbgap@:reads/SRP011999/SRS602202/SRX547682/SRR1293035/SRR1293035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPGNC-03A-02R.indel.vcf	3			
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGNC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGNC-03A-02R	RNA	EFO	SRS602202	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGNC-03A-02R A33588 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33588	SRX547682	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGNC-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPGNC-03A-02R A33588 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2161-1./A33588.fastq	SRR1791091	@dbgap@:reads/SRP011999/SRS602202/SRX547682/SRR1791091/SRR1791091.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_1_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293035	@dbgap@:reads/SRP011999/SRS602202/SRX547682/SRR1293035/SRR1293035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPGNC-03A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGYC-09A-01R	RNA	EFO	SRS602150	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGYC-09A-01R A32741 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32741	SRX547621	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGYC-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPGYC-09A-01R A32741 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2267-1./A32741.fastq	SRR1791011	@dbgap@:reads/SRP011999/SRS602150/SRX547621/SRR1791011/SRR1791011.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_2_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292986	@dbgap@:reads/SRP011999/SRS602150/SRX547621/SRR1292986/SRR1292986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPGYC-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGYC-09A-01R	RNA	EFO	SRS602150	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGYC-09A-01R A32741 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32741	SRX547621	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGYC-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPGYC-09A-01R A32741 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2267-1./A32741.fastq	SRR1791011	@dbgap@:reads/SRP011999/SRS602150/SRX547621/SRR1791011/SRR1791011.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_2_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292986	@dbgap@:reads/SRP011999/SRS602150/SRX547621/SRR1292986/SRR1292986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPGYC-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGYC-09A-01R	RNA	EFO	SRS602150	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGYC-09A-01R A32741 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32741	SRX547621	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGYC-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPGYC-09A-01R A32741 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2267-1./A32741.fastq	SRR1791011	@dbgap@:reads/SRP011999/SRS602150/SRX547621/SRR1791011/SRR1791011.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_2_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292986	@dbgap@:reads/SRP011999/SRS602150/SRX547621/SRR1292986/SRR1292986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPGYC-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGYC-09A-01R	RNA	EFO	SRS602150	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGYC-09A-01R A32741 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32741	SRX547621	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGYC-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPGYC-09A-01R A32741 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2267-1./A32741.fastq	SRR1791011	@dbgap@:reads/SRP011999/SRS602150/SRX547621/SRR1791011/SRR1791011.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_2_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292986	@dbgap@:reads/SRP011999/SRS602150/SRX547621/SRR1292986/SRR1292986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPGYC-09A-01R.fusion.vcf	3			
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGYC-09A-01R	RNA	EFO	SRS602150	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGYC-09A-01R A32741 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32741	SRX547621	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGYC-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPGYC-09A-01R A32741 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2267-1./A32741.fastq	SRR1791011	@dbgap@:reads/SRP011999/SRS602150/SRX547621/SRR1791011/SRR1791011.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_2_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292986	@dbgap@:reads/SRP011999/SRS602150/SRX547621/SRR1292986/SRR1292986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPGYC-09A-01R.indel.vcf	3			
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPGYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGYC-09A-01R	RNA	EFO	SRS602150	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPGYC-09A-01R A32741 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32741	SRX547621	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPGYC-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPGYC-09A-01R A32741 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2267-1./A32741.fastq	SRR1791011	@dbgap@:reads/SRP011999/SRS602150/SRX547621/SRR1791011/SRR1791011.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_2_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292986	@dbgap@:reads/SRP011999/SRS602150/SRX547621/SRR1292986/SRR1292986.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPGYC-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHEK-03A-01R	RNA	EFO	SRS602041	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHEK-03A-01R A32663 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32663	SRX543457	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHEK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPHEK-03A-01R A32663 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2257-1./A32663.fastq	SRR1791117	@dbgap@:reads/SRP011999/SRS602041/SRX543457/SRR1791117/SRR1791117.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_8_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288084	@dbgap@:reads/SRP011999/SRS602041/SRX543457/SRR1288084/SRR1288084.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPHEK-03A-01R.exon.quantification.txt	3			
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHEK-03A-01R	RNA	EFO	SRS602041	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHEK-03A-01R A32663 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32663	SRX543457	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHEK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPHEK-03A-01R A32663 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2257-1./A32663.fastq	SRR1791117	@dbgap@:reads/SRP011999/SRS602041/SRX543457/SRR1791117/SRR1791117.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_8_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288084	@dbgap@:reads/SRP011999/SRS602041/SRX543457/SRR1288084/SRR1288084.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPHEK-03A-01R.gene.quantification.txt	3			
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHEK-03A-01R	RNA	EFO	SRS602041	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHEK-03A-01R A32663 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32663	SRX543457	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHEK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPHEK-03A-01R A32663 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2257-1./A32663.fastq	SRR1791117	@dbgap@:reads/SRP011999/SRS602041/SRX543457/SRR1791117/SRR1791117.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_8_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288084	@dbgap@:reads/SRP011999/SRS602041/SRX543457/SRR1288084/SRR1288084.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPHEK-03A-01R.isoform.quantification.txt	3			
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHEK-03A-01R	RNA	EFO	SRS602041	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHEK-03A-01R A32663 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32663	SRX543457	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHEK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPHEK-03A-01R A32663 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2257-1./A32663.fastq	SRR1791117	@dbgap@:reads/SRP011999/SRS602041/SRX543457/SRR1791117/SRR1791117.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_8_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288084	@dbgap@:reads/SRP011999/SRS602041/SRX543457/SRR1288084/SRR1288084.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPHEK-03A-01R.fusion.vcf	3			
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHEK-03A-01R	RNA	EFO	SRS602041	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHEK-03A-01R A32663 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32663	SRX543457	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHEK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPHEK-03A-01R A32663 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2257-1./A32663.fastq	SRR1791117	@dbgap@:reads/SRP011999/SRS602041/SRX543457/SRR1791117/SRR1791117.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_8_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288084	@dbgap@:reads/SRP011999/SRS602041/SRX543457/SRR1288084/SRR1288084.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPHEK-03A-01R.indel.vcf	3			
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHEK-03A-01R	RNA	EFO	SRS602041	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHEK-03A-01R A32663 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32663	SRX543457	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHEK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPHEK-03A-01R A32663 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2257-1./A32663.fastq	SRR1791117	@dbgap@:reads/SRP011999/SRS602041/SRX543457/SRR1791117/SRR1791117.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_8_TCCCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288084	@dbgap@:reads/SRP011999/SRS602041/SRX543457/SRR1288084/SRR1288084.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPHEK-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHGD-09A-01R	RNA	EFO	SRS602132	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHGD-09A-01R A32742 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32742	SRX547617	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHGD-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPHGD-09A-01R A32742 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2265-1./A32742.fastq	SRR1791034	@dbgap@:reads/SRP011999/SRS602132/SRX547617/SRR1791034/SRR1791034.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_7_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292991	@dbgap@:reads/SRP011999/SRS602132/SRX547617/SRR1292991/SRR1292991.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPHGD-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHGD-09A-01R	RNA	EFO	SRS602132	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHGD-09A-01R A32742 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32742	SRX547617	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHGD-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPHGD-09A-01R A32742 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2265-1./A32742.fastq	SRR1791034	@dbgap@:reads/SRP011999/SRS602132/SRX547617/SRR1791034/SRR1791034.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_7_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292991	@dbgap@:reads/SRP011999/SRS602132/SRX547617/SRR1292991/SRR1292991.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPHGD-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHGD-09A-01R	RNA	EFO	SRS602132	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHGD-09A-01R A32742 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32742	SRX547617	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHGD-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPHGD-09A-01R A32742 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2265-1./A32742.fastq	SRR1791034	@dbgap@:reads/SRP011999/SRS602132/SRX547617/SRR1791034/SRR1791034.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_7_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292991	@dbgap@:reads/SRP011999/SRS602132/SRX547617/SRR1292991/SRR1292991.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPHGD-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHGD-09A-01R	RNA	EFO	SRS602132	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHGD-09A-01R A32742 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32742	SRX547617	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHGD-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPHGD-09A-01R A32742 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2265-1./A32742.fastq	SRR1791034	@dbgap@:reads/SRP011999/SRS602132/SRX547617/SRR1791034/SRR1791034.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_7_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292991	@dbgap@:reads/SRP011999/SRS602132/SRX547617/SRR1292991/SRR1292991.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPHGD-09A-01R.fusion.vcf	3			
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHGD-09A-01R	RNA	EFO	SRS602132	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHGD-09A-01R A32742 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32742	SRX547617	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHGD-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPHGD-09A-01R A32742 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2265-1./A32742.fastq	SRR1791034	@dbgap@:reads/SRP011999/SRS602132/SRX547617/SRR1791034/SRR1791034.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_7_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292991	@dbgap@:reads/SRP011999/SRS602132/SRX547617/SRR1292991/SRR1292991.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPHGD-09A-01R.indel.vcf	3			
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHGD-09A-01R	RNA	EFO	SRS602132	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHGD-09A-01R A32742 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32742	SRX547617	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHGD-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPHGD-09A-01R A32742 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2265-1./A32742.fastq	SRR1791034	@dbgap@:reads/SRP011999/SRS602132/SRX547617/SRR1791034/SRR1791034.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_7_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292991	@dbgap@:reads/SRP011999/SRS602132/SRX547617/SRR1292991/SRR1292991.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPHGD-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHJF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHJF-04A-01R	RNA	EFO	SRS602097	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHJF-04A-01R A32664 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32664	SRX543452	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHJF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPHJF-04A-01R A32664 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2217-1./A32664.fastq	SRR1791119	@dbgap@:reads/SRP011999/SRS602097/SRX543452/SRR1791119/SRR1791119.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_5_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288066	@dbgap@:reads/SRP011999/SRS602097/SRX543452/SRR1288066/SRR1288066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPHJF-04A-01R.exon.quantification.txt	3			
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHJF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHJF-04A-01R	RNA	EFO	SRS602097	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHJF-04A-01R A32664 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32664	SRX543452	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHJF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPHJF-04A-01R A32664 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2217-1./A32664.fastq	SRR1791119	@dbgap@:reads/SRP011999/SRS602097/SRX543452/SRR1791119/SRR1791119.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_5_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288066	@dbgap@:reads/SRP011999/SRS602097/SRX543452/SRR1288066/SRR1288066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPHJF-04A-01R.gene.quantification.txt	3			
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHJF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHJF-04A-01R	RNA	EFO	SRS602097	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHJF-04A-01R A32664 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32664	SRX543452	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHJF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPHJF-04A-01R A32664 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2217-1./A32664.fastq	SRR1791119	@dbgap@:reads/SRP011999/SRS602097/SRX543452/SRR1791119/SRR1791119.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_5_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288066	@dbgap@:reads/SRP011999/SRS602097/SRX543452/SRR1288066/SRR1288066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPHJF-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHJF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHJF-04A-01R	RNA	EFO	SRS602097	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHJF-04A-01R A32664 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32664	SRX543452	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHJF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPHJF-04A-01R A32664 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2217-1./A32664.fastq	SRR1791119	@dbgap@:reads/SRP011999/SRS602097/SRX543452/SRR1791119/SRR1791119.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_5_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288066	@dbgap@:reads/SRP011999/SRS602097/SRX543452/SRR1288066/SRR1288066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPHJF-04A-01R.fusion.vcf	3			
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHJF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHJF-04A-01R	RNA	EFO	SRS602097	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHJF-04A-01R A32664 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32664	SRX543452	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHJF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPHJF-04A-01R A32664 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2217-1./A32664.fastq	SRR1791119	@dbgap@:reads/SRP011999/SRS602097/SRX543452/SRR1791119/SRR1791119.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_5_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288066	@dbgap@:reads/SRP011999/SRS602097/SRX543452/SRR1288066/SRR1288066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPHJF-04A-01R.indel.vcf	3			
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHJF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHJF-04A-01R	RNA	EFO	SRS602097	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHJF-04A-01R A32664 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32664	SRX543452	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHJF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPHJF-04A-01R A32664 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2217-1./A32664.fastq	SRR1791119	@dbgap@:reads/SRP011999/SRS602097/SRX543452/SRR1791119/SRR1791119.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_5_TTCGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288066	@dbgap@:reads/SRP011999/SRS602097/SRX543452/SRR1288066/SRR1288066.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPHJF-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHJF-09A-01R	RNA	EFO	SRS602148	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHJF-09A-01R A32776 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32776	SRX547623	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHJF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPHJF-09A-01R A32776 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2263-1./A32776.fastq	SRR1791007	@dbgap@:reads/SRP011999/SRS602148/SRX547623/SRR1791007/SRR1791007.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_5_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292978	@dbgap@:reads/SRP011999/SRS602148/SRX547623/SRR1292978/SRR1292978.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPHJF-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHJF-09A-01R	RNA	EFO	SRS602148	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHJF-09A-01R A32776 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32776	SRX547623	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHJF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPHJF-09A-01R A32776 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2263-1./A32776.fastq	SRR1791007	@dbgap@:reads/SRP011999/SRS602148/SRX547623/SRR1791007/SRR1791007.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_5_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292978	@dbgap@:reads/SRP011999/SRS602148/SRX547623/SRR1292978/SRR1292978.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPHJF-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHJF-09A-01R	RNA	EFO	SRS602148	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHJF-09A-01R A32776 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32776	SRX547623	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHJF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPHJF-09A-01R A32776 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2263-1./A32776.fastq	SRR1791007	@dbgap@:reads/SRP011999/SRS602148/SRX547623/SRR1791007/SRR1791007.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_5_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292978	@dbgap@:reads/SRP011999/SRS602148/SRX547623/SRR1292978/SRR1292978.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPHJF-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHJF-09A-01R	RNA	EFO	SRS602148	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHJF-09A-01R A32776 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32776	SRX547623	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHJF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPHJF-09A-01R A32776 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2263-1./A32776.fastq	SRR1791007	@dbgap@:reads/SRP011999/SRS602148/SRX547623/SRR1791007/SRR1791007.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_5_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292978	@dbgap@:reads/SRP011999/SRS602148/SRX547623/SRR1292978/SRR1292978.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPHJF-09A-01R.fusion.vcf	3			
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHJF-09A-01R	RNA	EFO	SRS602148	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHJF-09A-01R A32776 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32776	SRX547623	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHJF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPHJF-09A-01R A32776 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2263-1./A32776.fastq	SRR1791007	@dbgap@:reads/SRP011999/SRS602148/SRX547623/SRR1791007/SRR1791007.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_5_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292978	@dbgap@:reads/SRP011999/SRS602148/SRX547623/SRR1292978/SRR1292978.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPHJF-09A-01R.indel.vcf	3			
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHJF-09A-01R	RNA	EFO	SRS602148	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHJF-09A-01R A32776 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32776	SRX547623	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHJF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPHJF-09A-01R A32776 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2263-1./A32776.fastq	SRR1791007	@dbgap@:reads/SRP011999/SRS602148/SRX547623/SRR1791007/SRR1791007.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_5_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292978	@dbgap@:reads/SRP011999/SRS602148/SRX547623/SRR1292978/SRR1292978.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPHJF-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHMH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHMH-09A-02R	RNA	EFO	SRS602231	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHMH-09A-02R A33599 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33599	SRX547675	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHMH-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPHMH-09A-02R A33599 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2167-1./A33599.fastq	SRR1797121	@dbgap@:reads/SRP011999/SRS602231/SRX547675/SRR1797121/SRR1797121.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_7_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293037	@dbgap@:reads/SRP011999/SRS602231/SRX547675/SRR1293037/SRR1293037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPHMH-09A-02R.exon.quantification.txt	3			
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHMH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHMH-09A-02R	RNA	EFO	SRS602231	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHMH-09A-02R A33599 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33599	SRX547675	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHMH-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPHMH-09A-02R A33599 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2167-1./A33599.fastq	SRR1797121	@dbgap@:reads/SRP011999/SRS602231/SRX547675/SRR1797121/SRR1797121.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_7_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293037	@dbgap@:reads/SRP011999/SRS602231/SRX547675/SRR1293037/SRR1293037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPHMH-09A-02R.gene.quantification.txt	3			
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHMH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHMH-09A-02R	RNA	EFO	SRS602231	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHMH-09A-02R A33599 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33599	SRX547675	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHMH-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPHMH-09A-02R A33599 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2167-1./A33599.fastq	SRR1797121	@dbgap@:reads/SRP011999/SRS602231/SRX547675/SRR1797121/SRR1797121.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_7_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293037	@dbgap@:reads/SRP011999/SRS602231/SRX547675/SRR1293037/SRR1293037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPHMH-09A-02R.isoform.quantification.txt	3			
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHMH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHMH-09A-02R	RNA	EFO	SRS602231	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHMH-09A-02R A33599 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33599	SRX547675	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHMH-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPHMH-09A-02R A33599 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2167-1./A33599.fastq	SRR1797121	@dbgap@:reads/SRP011999/SRS602231/SRX547675/SRR1797121/SRR1797121.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_7_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293037	@dbgap@:reads/SRP011999/SRS602231/SRX547675/SRR1293037/SRR1293037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPHMH-09A-02R.fusion.vcf	3			
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHMH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHMH-09A-02R	RNA	EFO	SRS602231	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHMH-09A-02R A33599 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33599	SRX547675	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHMH-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPHMH-09A-02R A33599 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2167-1./A33599.fastq	SRR1797121	@dbgap@:reads/SRP011999/SRS602231/SRX547675/SRR1797121/SRR1797121.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_7_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293037	@dbgap@:reads/SRP011999/SRS602231/SRX547675/SRR1293037/SRR1293037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPHMH-09A-02R.indel.vcf	3			
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHMH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHMH-09A-02R	RNA	EFO	SRS602231	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHMH-09A-02R A33599 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33599	SRX547675	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHMH-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPHMH-09A-02R A33599 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2167-1./A33599.fastq	SRR1797121	@dbgap@:reads/SRP011999/SRS602231/SRX547675/SRR1797121/SRR1797121.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_7_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293037	@dbgap@:reads/SRP011999/SRS602231/SRX547675/SRR1293037/SRR1293037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPHMH-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHZT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09A-01R	RNA	EFO	SRS602178	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09A-01R A32743 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32743	SRX547585	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHZT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPHZT-09A-01R A32743 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2273-1./A32743.fastq	SRR1797066	@dbgap@:reads/SRP011999/SRS602178/SRX547585/SRR1797066/SRR1797066.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_8_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292965	@dbgap@:reads/SRP011999/SRS602178/SRX547585/SRR1292965/SRR1292965.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPHZT-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHZT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09A-01R	RNA	EFO	SRS602178	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09A-01R A32743 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32743	SRX547585	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHZT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPHZT-09A-01R A32743 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2273-1./A32743.fastq	SRR1797066	@dbgap@:reads/SRP011999/SRS602178/SRX547585/SRR1797066/SRR1797066.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_8_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292965	@dbgap@:reads/SRP011999/SRS602178/SRX547585/SRR1292965/SRR1292965.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPHZT-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHZT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09A-01R	RNA	EFO	SRS602178	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09A-01R A32743 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32743	SRX547585	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHZT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPHZT-09A-01R A32743 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2273-1./A32743.fastq	SRR1797066	@dbgap@:reads/SRP011999/SRS602178/SRX547585/SRR1797066/SRR1797066.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_8_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292965	@dbgap@:reads/SRP011999/SRS602178/SRX547585/SRR1292965/SRR1292965.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPHZT-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHZT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09A-01R	RNA	EFO	SRS602178	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09A-01R A32743 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32743	SRX547585	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHZT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPHZT-09A-01R A32743 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2273-1./A32743.fastq	SRR1797066	@dbgap@:reads/SRP011999/SRS602178/SRX547585/SRR1797066/SRR1797066.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_8_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292965	@dbgap@:reads/SRP011999/SRS602178/SRX547585/SRR1292965/SRR1292965.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPHZT-09A-01R.fusion.vcf	3			
TARGET-10-PAPHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHZT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09A-01R	RNA	EFO	SRS602178	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09A-01R A32743 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32743	SRX547585	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHZT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPHZT-09A-01R A32743 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2273-1./A32743.fastq	SRR1797066	@dbgap@:reads/SRP011999/SRS602178/SRX547585/SRR1797066/SRR1797066.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_8_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292965	@dbgap@:reads/SRP011999/SRS602178/SRX547585/SRR1292965/SRR1292965.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPHZT-09A-01R.indel.vcf	3			
TARGET-10-PAPHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHZT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09A-01R	RNA	EFO	SRS602178	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09A-01R A32743 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32743	SRX547585	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHZT-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPHZT-09A-01R A32743 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2273-1./A32743.fastq	SRR1797066	@dbgap@:reads/SRP011999/SRS602178/SRX547585/SRR1797066/SRR1797066.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_8_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292965	@dbgap@:reads/SRP011999/SRS602178/SRX547585/SRR1292965/SRR1292965.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPHZT-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHZT-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09B-01R	RNA	EFO	SRS2416213	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09B-01R A61074 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61074	SRX3073854	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHZT-09B-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPHZT-09B-01R A61074 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4505-1./A61074.fastq	SRR5912868	@dbgap@:reads/SRP011999/SRS2416213/SRX3073854/SRR5912868/SRR5912868.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPHZT-09B-01R.exon.quantification.txt	3			
TARGET-10-PAPHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHZT-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09B-01R	RNA	EFO	SRS2416213	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09B-01R A61074 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61074	SRX3073854	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHZT-09B-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPHZT-09B-01R A61074 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4505-1./A61074.fastq	SRR5912868	@dbgap@:reads/SRP011999/SRS2416213/SRX3073854/SRR5912868/SRR5912868.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPHZT-09B-01R.gene.quantification.txt	3			
TARGET-10-PAPHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHZT-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09B-01R	RNA	EFO	SRS2416213	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09B-01R A61074 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61074	SRX3073854	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHZT-09B-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPHZT-09B-01R A61074 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4505-1./A61074.fastq	SRR5912868	@dbgap@:reads/SRP011999/SRS2416213/SRX3073854/SRR5912868/SRR5912868.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPHZT-09B-01R.isoform.quantification.txt	3			
TARGET-10-PAPHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHZT-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09B-01R	RNA	EFO	SRS2416213	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09B-01R A61074 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61074	SRX3073854	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHZT-09B-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPHZT-09B-01R A61074 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4505-1./A61074.fastq	SRR5912868	@dbgap@:reads/SRP011999/SRS2416213/SRX3073854/SRR5912868/SRR5912868.sra	1								bcgsc.ca:Protocol:mRNAseq-Fusion-DeFuse:01		TARGET-10-PAPHZT-09B-01R.results.filtered.tsv	3			
TARGET-10-PAPHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHZT-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09B-01R	RNA	EFO	SRS2416213	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09B-01R A61074 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61074	SRX3073854	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHZT-09B-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPHZT-09B-01R A61074 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4505-1./A61074.fastq	SRR5912868	@dbgap@:reads/SRP011999/SRS2416213/SRX3073854/SRR5912868/SRR5912868.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPHZT-09B-01R.fusion.vcf	3			
TARGET-10-PAPHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHZT-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09B-01R	RNA	EFO	SRS2416213	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09B-01R A61074 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61074	SRX3073854	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHZT-09B-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPHZT-09B-01R A61074 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4505-1./A61074.fastq	SRR5912868	@dbgap@:reads/SRP011999/SRS2416213/SRX3073854/SRR5912868/SRR5912868.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPHZT-09B-01R.indel.vcf	3			
TARGET-10-PAPHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHZT-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09B-01R	RNA	EFO	SRS2416213	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHZT-09B-01R A61074 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61074	SRX3073854	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPHZT-09B-01R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPHZT-09B-01R A61074 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4505-1./A61074.fastq	SRR5912868	@dbgap@:reads/SRP011999/SRS2416213/SRX3073854/SRR5912868/SRR5912868.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-10-PAPHZT-09B-01R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Tab:01	TARGET-10-PAPHZT-09B-01R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIGX-09A-02R	RNA	EFO	SRS602240	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIGX-09A-02R A33594 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33594	SRX547673	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIGX-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPIGX-09A-02R A33594 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2197-1./A33594.fastq	SRR1791002	@dbgap@:reads/SRP011999/SRS602240/SRX547673/SRR1791002/SRR1791002.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_5_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293063	@dbgap@:reads/SRP011999/SRS602240/SRX547673/SRR1293063/SRR1293063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPIGX-09A-02R.exon.quantification.txt	3			
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIGX-09A-02R	RNA	EFO	SRS602240	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIGX-09A-02R A33594 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33594	SRX547673	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIGX-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPIGX-09A-02R A33594 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2197-1./A33594.fastq	SRR1791002	@dbgap@:reads/SRP011999/SRS602240/SRX547673/SRR1791002/SRR1791002.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_5_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293063	@dbgap@:reads/SRP011999/SRS602240/SRX547673/SRR1293063/SRR1293063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPIGX-09A-02R.gene.quantification.txt	3			
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIGX-09A-02R	RNA	EFO	SRS602240	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIGX-09A-02R A33594 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33594	SRX547673	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIGX-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPIGX-09A-02R A33594 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2197-1./A33594.fastq	SRR1791002	@dbgap@:reads/SRP011999/SRS602240/SRX547673/SRR1791002/SRR1791002.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_5_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293063	@dbgap@:reads/SRP011999/SRS602240/SRX547673/SRR1293063/SRR1293063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPIGX-09A-02R.isoform.quantification.txt	3			
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIGX-09A-02R	RNA	EFO	SRS602240	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIGX-09A-02R A33594 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33594	SRX547673	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIGX-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPIGX-09A-02R A33594 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2197-1./A33594.fastq	SRR1791002	@dbgap@:reads/SRP011999/SRS602240/SRX547673/SRR1791002/SRR1791002.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_5_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293063	@dbgap@:reads/SRP011999/SRS602240/SRX547673/SRR1293063/SRR1293063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPIGX-09A-02R.fusion.vcf	3			
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIGX-09A-02R	RNA	EFO	SRS602240	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIGX-09A-02R A33594 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33594	SRX547673	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIGX-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPIGX-09A-02R A33594 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2197-1./A33594.fastq	SRR1791002	@dbgap@:reads/SRP011999/SRS602240/SRX547673/SRR1791002/SRR1791002.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_5_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293063	@dbgap@:reads/SRP011999/SRS602240/SRX547673/SRR1293063/SRR1293063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPIGX-09A-02R.indel.vcf	3			
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIGX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIGX-09A-02R	RNA	EFO	SRS602240	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIGX-09A-02R A33594 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33594	SRX547673	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIGX-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPIGX-09A-02R A33594 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2197-1./A33594.fastq	SRR1791002	@dbgap@:reads/SRP011999/SRS602240/SRX547673/SRR1791002/SRR1791002.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_5_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293063	@dbgap@:reads/SRP011999/SRS602240/SRX547673/SRR1293063/SRR1293063.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPIGX-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJB-04A-01R	RNA	EFO	SRS602036	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJB-04A-01R A32665 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32665	SRX543430	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIJB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPIJB-04A-01R A32665 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2257-1./A32665.fastq	SRR1791068	@dbgap@:reads/SRP011999/SRS602036/SRX543430/SRR1791068/SRR1791068.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_8_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288019	@dbgap@:reads/SRP011999/SRS602036/SRX543430/SRR1288019/SRR1288019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPIJB-04A-01R.exon.quantification.txt	3			
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJB-04A-01R	RNA	EFO	SRS602036	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJB-04A-01R A32665 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32665	SRX543430	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIJB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPIJB-04A-01R A32665 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2257-1./A32665.fastq	SRR1791068	@dbgap@:reads/SRP011999/SRS602036/SRX543430/SRR1791068/SRR1791068.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_8_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288019	@dbgap@:reads/SRP011999/SRS602036/SRX543430/SRR1288019/SRR1288019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPIJB-04A-01R.gene.quantification.txt	3			
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJB-04A-01R	RNA	EFO	SRS602036	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJB-04A-01R A32665 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32665	SRX543430	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIJB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPIJB-04A-01R A32665 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2257-1./A32665.fastq	SRR1791068	@dbgap@:reads/SRP011999/SRS602036/SRX543430/SRR1791068/SRR1791068.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_8_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288019	@dbgap@:reads/SRP011999/SRS602036/SRX543430/SRR1288019/SRR1288019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPIJB-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJB-04A-01R	RNA	EFO	SRS602036	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJB-04A-01R A32665 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32665	SRX543430	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIJB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPIJB-04A-01R A32665 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2257-1./A32665.fastq	SRR1791068	@dbgap@:reads/SRP011999/SRS602036/SRX543430/SRR1791068/SRR1791068.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_8_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288019	@dbgap@:reads/SRP011999/SRS602036/SRX543430/SRR1288019/SRR1288019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPIJB-04A-01R.fusion.vcf	3			
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJB-04A-01R	RNA	EFO	SRS602036	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJB-04A-01R A32665 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32665	SRX543430	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIJB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPIJB-04A-01R A32665 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2257-1./A32665.fastq	SRR1791068	@dbgap@:reads/SRP011999/SRS602036/SRX543430/SRR1791068/SRR1791068.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_8_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288019	@dbgap@:reads/SRP011999/SRS602036/SRX543430/SRR1288019/SRR1288019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPIJB-04A-01R.indel.vcf	3			
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJB-04A-01R	RNA	EFO	SRS602036	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJB-04A-01R A32665 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32665	SRX543430	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIJB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPIJB-04A-01R A32665 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2257-1./A32665.fastq	SRR1791068	@dbgap@:reads/SRP011999/SRS602036/SRX543430/SRR1791068/SRR1791068.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_8_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288019	@dbgap@:reads/SRP011999/SRS602036/SRX543430/SRR1288019/SRR1288019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPIJB-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-01R	RNA	EFO	SRS602183	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-01R A32744 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32744	SRX547589	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIJM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPIJM-09A-01R A32744 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2260-1./A32744.fastq	SRR1797117	@dbgap@:reads/SRP011999/SRS602183/SRX547589/SRR1797117/SRR1797117.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_2_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292948	@dbgap@:reads/SRP011999/SRS602183/SRX547589/SRR1292948/SRR1292948.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPIJM-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-01R	RNA	EFO	SRS602183	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-01R A32744 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32744	SRX547589	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIJM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPIJM-09A-01R A32744 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2260-1./A32744.fastq	SRR1797117	@dbgap@:reads/SRP011999/SRS602183/SRX547589/SRR1797117/SRR1797117.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_2_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292948	@dbgap@:reads/SRP011999/SRS602183/SRX547589/SRR1292948/SRR1292948.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPIJM-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-01R	RNA	EFO	SRS602183	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-01R A32744 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32744	SRX547589	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIJM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPIJM-09A-01R A32744 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2260-1./A32744.fastq	SRR1797117	@dbgap@:reads/SRP011999/SRS602183/SRX547589/SRR1797117/SRR1797117.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_2_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292948	@dbgap@:reads/SRP011999/SRS602183/SRX547589/SRR1292948/SRR1292948.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPIJM-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-01R	RNA	EFO	SRS602183	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-01R A32744 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32744	SRX547589	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIJM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPIJM-09A-01R A32744 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2260-1./A32744.fastq	SRR1797117	@dbgap@:reads/SRP011999/SRS602183/SRX547589/SRR1797117/SRR1797117.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_2_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292948	@dbgap@:reads/SRP011999/SRS602183/SRX547589/SRR1292948/SRR1292948.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPIJM-09A-01R.fusion.vcf	3			
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-01R	RNA	EFO	SRS602183	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-01R A32744 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32744	SRX547589	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIJM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPIJM-09A-01R A32744 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2260-1./A32744.fastq	SRR1797117	@dbgap@:reads/SRP011999/SRS602183/SRX547589/SRR1797117/SRR1797117.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_2_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292948	@dbgap@:reads/SRP011999/SRS602183/SRX547589/SRR1292948/SRR1292948.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPIJM-09A-01R.indel.vcf	3			
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-01R	RNA	EFO	SRS602183	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-01R A32744 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32744	SRX547589	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIJM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPIJM-09A-01R A32744 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2260-1./A32744.fastq	SRR1797117	@dbgap@:reads/SRP011999/SRS602183/SRX547589/SRR1797117/SRR1797117.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_2_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292948	@dbgap@:reads/SRP011999/SRS602183/SRX547589/SRR1292948/SRR1292948.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPIJM-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-02R	RNA	EFO	SRS2416212	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-02R A61073 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61073	SRX3073855	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIJM-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPIJM-09A-02R A61073 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4506-1./A61073.fastq	SRR5912873	@dbgap@:reads/SRP011999/SRS2416212/SRX3073855/SRR5912873/SRR5912873.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPIJM-09A-02R.exon.quantification.txt	3			
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-02R	RNA	EFO	SRS2416212	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-02R A61073 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61073	SRX3073855	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIJM-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPIJM-09A-02R A61073 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4506-1./A61073.fastq	SRR5912873	@dbgap@:reads/SRP011999/SRS2416212/SRX3073855/SRR5912873/SRR5912873.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPIJM-09A-02R.gene.quantification.txt	3			
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-02R	RNA	EFO	SRS2416212	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-02R A61073 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61073	SRX3073855	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIJM-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPIJM-09A-02R A61073 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4506-1./A61073.fastq	SRR5912873	@dbgap@:reads/SRP011999/SRS2416212/SRX3073855/SRR5912873/SRR5912873.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPIJM-09A-02R.isoform.quantification.txt	3			
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-02R	RNA	EFO	SRS2416212	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-02R A61073 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61073	SRX3073855	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIJM-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPIJM-09A-02R A61073 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4506-1./A61073.fastq	SRR5912873	@dbgap@:reads/SRP011999/SRS2416212/SRX3073855/SRR5912873/SRR5912873.sra	1								bcgsc.ca:Protocol:mRNAseq-Fusion-DeFuse:01		TARGET-10-PAPIJM-09A-02R.results.filtered.tsv	3			
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-02R	RNA	EFO	SRS2416212	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-02R A61073 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61073	SRX3073855	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIJM-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPIJM-09A-02R A61073 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4506-1./A61073.fastq	SRR5912873	@dbgap@:reads/SRP011999/SRS2416212/SRX3073855/SRR5912873/SRR5912873.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPIJM-09A-02R.fusion.vcf	3			
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-02R	RNA	EFO	SRS2416212	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-02R A61073 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61073	SRX3073855	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIJM-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPIJM-09A-02R A61073 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4506-1./A61073.fastq	SRR5912873	@dbgap@:reads/SRP011999/SRS2416212/SRX3073855/SRR5912873/SRR5912873.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPIJM-09A-02R.indel.vcf	3			
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-02R	RNA	EFO	SRS2416212	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIJM-09A-02R A61073 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61073	SRX3073855	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIJM-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPIJM-09A-02R A61073 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4506-1./A61073.fastq	SRR5912873	@dbgap@:reads/SRP011999/SRS2416212/SRX3073855/SRR5912873/SRR5912873.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-10-PAPIJM-09A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Tab:01	TARGET-10-PAPIJM-09A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIRZ-09A-01R	RNA	EFO	SRS602063	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIRZ-09A-01R A32667 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32667	SRX543425	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIRZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPIRZ-09A-01R A32667 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2241-1./A32667.fastq	SRR1791074	@dbgap@:reads/SRP011999/SRS602063/SRX543425/SRR1791074/SRR1791074.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_8_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288022	@dbgap@:reads/SRP011999/SRS602063/SRX543425/SRR1288022/SRR1288022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPIRZ-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIRZ-09A-01R	RNA	EFO	SRS602063	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIRZ-09A-01R A32667 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32667	SRX543425	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIRZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPIRZ-09A-01R A32667 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2241-1./A32667.fastq	SRR1791074	@dbgap@:reads/SRP011999/SRS602063/SRX543425/SRR1791074/SRR1791074.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_8_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288022	@dbgap@:reads/SRP011999/SRS602063/SRX543425/SRR1288022/SRR1288022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPIRZ-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIRZ-09A-01R	RNA	EFO	SRS602063	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIRZ-09A-01R A32667 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32667	SRX543425	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIRZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPIRZ-09A-01R A32667 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2241-1./A32667.fastq	SRR1791074	@dbgap@:reads/SRP011999/SRS602063/SRX543425/SRR1791074/SRR1791074.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_8_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288022	@dbgap@:reads/SRP011999/SRS602063/SRX543425/SRR1288022/SRR1288022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPIRZ-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIRZ-09A-01R	RNA	EFO	SRS602063	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIRZ-09A-01R A32667 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32667	SRX543425	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIRZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPIRZ-09A-01R A32667 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2241-1./A32667.fastq	SRR1791074	@dbgap@:reads/SRP011999/SRS602063/SRX543425/SRR1791074/SRR1791074.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_8_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288022	@dbgap@:reads/SRP011999/SRS602063/SRX543425/SRR1288022/SRR1288022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPIRZ-09A-01R.fusion.vcf	3			
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIRZ-09A-01R	RNA	EFO	SRS602063	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIRZ-09A-01R A32667 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32667	SRX543425	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIRZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPIRZ-09A-01R A32667 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2241-1./A32667.fastq	SRR1791074	@dbgap@:reads/SRP011999/SRS602063/SRX543425/SRR1791074/SRR1791074.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_8_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288022	@dbgap@:reads/SRP011999/SRS602063/SRX543425/SRR1288022/SRR1288022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPIRZ-09A-01R.indel.vcf	3			
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPIRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIRZ-09A-01R	RNA	EFO	SRS602063	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIRZ-09A-01R A32667 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32667	SRX543425	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPIRZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPIRZ-09A-01R A32667 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2241-1./A32667.fastq	SRR1791074	@dbgap@:reads/SRP011999/SRS602063/SRX543425/SRR1791074/SRR1791074.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_8_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288022	@dbgap@:reads/SRP011999/SRS602063/SRX543425/SRR1288022/SRR1288022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPIRZ-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPISG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPISG-04A-01R	RNA	EFO	SRS602058	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPISG-04A-01R A32668 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32668	SRX543406	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPISG-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPISG-04A-01R A32668 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2231-1./A32668.fastq	SRR1791050	@dbgap@:reads/SRP011999/SRS602058/SRX543406/SRR1791050/SRR1791050.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_4_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288007	@dbgap@:reads/SRP011999/SRS602058/SRX543406/SRR1288007/SRR1288007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPISG-04A-01R.exon.quantification.txt	3			
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPISG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPISG-04A-01R	RNA	EFO	SRS602058	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPISG-04A-01R A32668 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32668	SRX543406	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPISG-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPISG-04A-01R A32668 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2231-1./A32668.fastq	SRR1791050	@dbgap@:reads/SRP011999/SRS602058/SRX543406/SRR1791050/SRR1791050.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_4_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288007	@dbgap@:reads/SRP011999/SRS602058/SRX543406/SRR1288007/SRR1288007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPISG-04A-01R.gene.quantification.txt	3			
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPISG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPISG-04A-01R	RNA	EFO	SRS602058	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPISG-04A-01R A32668 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32668	SRX543406	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPISG-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPISG-04A-01R A32668 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2231-1./A32668.fastq	SRR1791050	@dbgap@:reads/SRP011999/SRS602058/SRX543406/SRR1791050/SRR1791050.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_4_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288007	@dbgap@:reads/SRP011999/SRS602058/SRX543406/SRR1288007/SRR1288007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPISG-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPISG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPISG-04A-01R	RNA	EFO	SRS602058	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPISG-04A-01R A32668 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32668	SRX543406	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPISG-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPISG-04A-01R A32668 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2231-1./A32668.fastq	SRR1791050	@dbgap@:reads/SRP011999/SRS602058/SRX543406/SRR1791050/SRR1791050.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_4_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288007	@dbgap@:reads/SRP011999/SRS602058/SRX543406/SRR1288007/SRR1288007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPISG-04A-01R.fusion.vcf	3			
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPISG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPISG-04A-01R	RNA	EFO	SRS602058	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPISG-04A-01R A32668 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32668	SRX543406	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPISG-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPISG-04A-01R A32668 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2231-1./A32668.fastq	SRR1791050	@dbgap@:reads/SRP011999/SRS602058/SRX543406/SRR1791050/SRR1791050.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_4_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288007	@dbgap@:reads/SRP011999/SRS602058/SRX543406/SRR1288007/SRR1288007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPISG-04A-01R.indel.vcf	3			
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPISG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPISG-04A-01R	RNA	EFO	SRS602058	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPISG-04A-01R A32668 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32668	SRX543406	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPISG-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPISG-04A-01R A32668 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2231-1./A32668.fastq	SRR1791050	@dbgap@:reads/SRP011999/SRS602058/SRX543406/SRR1791050/SRR1791050.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_4_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288007	@dbgap@:reads/SRP011999/SRS602058/SRX543406/SRR1288007/SRR1288007.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPISG-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHB-04A-02R	RNA	EFO	SRS602230	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHB-04A-02R A33602 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33602	SRX547649	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJHB-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPJHB-04A-02R A33602 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2184-1./A33602.fastq	SRR1797081	@dbgap@:reads/SRP011999/SRS602230/SRX547649/SRR1797081/SRR1797081.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_8_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293050	@dbgap@:reads/SRP011999/SRS602230/SRX547649/SRR1293050/SRR1293050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPJHB-04A-02R.exon.quantification.txt	3			
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHB-04A-02R	RNA	EFO	SRS602230	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHB-04A-02R A33602 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33602	SRX547649	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJHB-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPJHB-04A-02R A33602 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2184-1./A33602.fastq	SRR1797081	@dbgap@:reads/SRP011999/SRS602230/SRX547649/SRR1797081/SRR1797081.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_8_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293050	@dbgap@:reads/SRP011999/SRS602230/SRX547649/SRR1293050/SRR1293050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPJHB-04A-02R.gene.quantification.txt	3			
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHB-04A-02R	RNA	EFO	SRS602230	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHB-04A-02R A33602 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33602	SRX547649	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJHB-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPJHB-04A-02R A33602 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2184-1./A33602.fastq	SRR1797081	@dbgap@:reads/SRP011999/SRS602230/SRX547649/SRR1797081/SRR1797081.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_8_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293050	@dbgap@:reads/SRP011999/SRS602230/SRX547649/SRR1293050/SRR1293050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPJHB-04A-02R.isoform.quantification.txt	3			
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHB-04A-02R	RNA	EFO	SRS602230	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHB-04A-02R A33602 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33602	SRX547649	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJHB-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPJHB-04A-02R A33602 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2184-1./A33602.fastq	SRR1797081	@dbgap@:reads/SRP011999/SRS602230/SRX547649/SRR1797081/SRR1797081.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_8_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293050	@dbgap@:reads/SRP011999/SRS602230/SRX547649/SRR1293050/SRR1293050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPJHB-04A-02R.fusion.vcf	3			
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHB-04A-02R	RNA	EFO	SRS602230	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHB-04A-02R A33602 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33602	SRX547649	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJHB-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPJHB-04A-02R A33602 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2184-1./A33602.fastq	SRR1797081	@dbgap@:reads/SRP011999/SRS602230/SRX547649/SRR1797081/SRR1797081.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_8_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293050	@dbgap@:reads/SRP011999/SRS602230/SRX547649/SRR1293050/SRR1293050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPJHB-04A-02R.indel.vcf	3			
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHB-04A-02R	RNA	EFO	SRS602230	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHB-04A-02R A33602 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33602	SRX547649	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJHB-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPJHB-04A-02R A33602 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2184-1./A33602.fastq	SRR1797081	@dbgap@:reads/SRP011999/SRS602230/SRX547649/SRR1797081/SRR1797081.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_8_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293050	@dbgap@:reads/SRP011999/SRS602230/SRX547649/SRR1293050/SRR1293050.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPJHB-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHB-09A-01R	RNA	EFO	SRS602104	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHB-09A-01R A32648 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32648	SRX543466	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJHB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPJHB-09A-01R A32648 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2218-1./A32648.fastq	SRR1790987	@dbgap@:reads/SRP011999/SRS602104/SRX543466/SRR1790987/SRR1790987.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_6_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288008	@dbgap@:reads/SRP011999/SRS602104/SRX543466/SRR1288008/SRR1288008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPJHB-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHB-09A-01R	RNA	EFO	SRS602104	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHB-09A-01R A32648 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32648	SRX543466	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJHB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPJHB-09A-01R A32648 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2218-1./A32648.fastq	SRR1790987	@dbgap@:reads/SRP011999/SRS602104/SRX543466/SRR1790987/SRR1790987.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_6_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288008	@dbgap@:reads/SRP011999/SRS602104/SRX543466/SRR1288008/SRR1288008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPJHB-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHB-09A-01R	RNA	EFO	SRS602104	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHB-09A-01R A32648 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32648	SRX543466	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJHB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPJHB-09A-01R A32648 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2218-1./A32648.fastq	SRR1790987	@dbgap@:reads/SRP011999/SRS602104/SRX543466/SRR1790987/SRR1790987.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_6_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288008	@dbgap@:reads/SRP011999/SRS602104/SRX543466/SRR1288008/SRR1288008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPJHB-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHB-09A-01R	RNA	EFO	SRS602104	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHB-09A-01R A32648 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32648	SRX543466	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJHB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPJHB-09A-01R A32648 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2218-1./A32648.fastq	SRR1790987	@dbgap@:reads/SRP011999/SRS602104/SRX543466/SRR1790987/SRR1790987.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_6_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288008	@dbgap@:reads/SRP011999/SRS602104/SRX543466/SRR1288008/SRR1288008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPJHB-09A-01R.fusion.vcf	3			
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHB-09A-01R	RNA	EFO	SRS602104	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHB-09A-01R A32648 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32648	SRX543466	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJHB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPJHB-09A-01R A32648 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2218-1./A32648.fastq	SRR1790987	@dbgap@:reads/SRP011999/SRS602104/SRX543466/SRR1790987/SRR1790987.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_6_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288008	@dbgap@:reads/SRP011999/SRS602104/SRX543466/SRR1288008/SRR1288008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPJHB-09A-01R.indel.vcf	3			
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHB-09A-01R	RNA	EFO	SRS602104	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHB-09A-01R A32648 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32648	SRX543466	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJHB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPJHB-09A-01R A32648 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2218-1./A32648.fastq	SRR1790987	@dbgap@:reads/SRP011999/SRS602104/SRX543466/SRR1790987/SRR1790987.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_6_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288008	@dbgap@:reads/SRP011999/SRS602104/SRX543466/SRR1288008/SRR1288008.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPJHB-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHR-09A-01R	RNA	EFO	SRS602098	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHR-09A-01R A32669 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32669	SRX543397	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJHR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPJHR-09A-01R A32669 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2221-1./A32669.fastq	SRR1797115	@dbgap@:reads/SRP011999/SRS602098/SRX543397/SRR1797115/SRR1797115.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_2_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288043	@dbgap@:reads/SRP011999/SRS602098/SRX543397/SRR1288043/SRR1288043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPJHR-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHR-09A-01R	RNA	EFO	SRS602098	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHR-09A-01R A32669 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32669	SRX543397	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJHR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPJHR-09A-01R A32669 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2221-1./A32669.fastq	SRR1797115	@dbgap@:reads/SRP011999/SRS602098/SRX543397/SRR1797115/SRR1797115.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_2_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288043	@dbgap@:reads/SRP011999/SRS602098/SRX543397/SRR1288043/SRR1288043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPJHR-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHR-09A-01R	RNA	EFO	SRS602098	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHR-09A-01R A32669 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32669	SRX543397	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJHR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPJHR-09A-01R A32669 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2221-1./A32669.fastq	SRR1797115	@dbgap@:reads/SRP011999/SRS602098/SRX543397/SRR1797115/SRR1797115.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_2_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288043	@dbgap@:reads/SRP011999/SRS602098/SRX543397/SRR1288043/SRR1288043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPJHR-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHR-09A-01R	RNA	EFO	SRS602098	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHR-09A-01R A32669 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32669	SRX543397	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJHR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPJHR-09A-01R A32669 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2221-1./A32669.fastq	SRR1797115	@dbgap@:reads/SRP011999/SRS602098/SRX543397/SRR1797115/SRR1797115.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_2_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288043	@dbgap@:reads/SRP011999/SRS602098/SRX543397/SRR1288043/SRR1288043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPJHR-09A-01R.fusion.vcf	3			
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHR-09A-01R	RNA	EFO	SRS602098	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHR-09A-01R A32669 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32669	SRX543397	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJHR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPJHR-09A-01R A32669 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2221-1./A32669.fastq	SRR1797115	@dbgap@:reads/SRP011999/SRS602098/SRX543397/SRR1797115/SRR1797115.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_2_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288043	@dbgap@:reads/SRP011999/SRS602098/SRX543397/SRR1288043/SRR1288043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPJHR-09A-01R.indel.vcf	3			
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHR-09A-01R	RNA	EFO	SRS602098	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJHR-09A-01R A32669 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32669	SRX543397	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJHR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPJHR-09A-01R A32669 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2221-1./A32669.fastq	SRR1797115	@dbgap@:reads/SRP011999/SRS602098/SRX543397/SRR1797115/SRR1797115.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_2_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288043	@dbgap@:reads/SRP011999/SRS602098/SRX543397/SRR1288043/SRR1288043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPJHR-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJIB-04A-01R	RNA	EFO	SRS602073	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJIB-04A-01R A32670 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32670	SRX543449	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJIB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPJIB-04A-01R A32670 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2255-1./A32670.fastq	SRR1791070	@dbgap@:reads/SRP011999/SRS602073/SRX543449/SRR1791070/SRR1791070.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_6_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288016	@dbgap@:reads/SRP011999/SRS602073/SRX543449/SRR1288016/SRR1288016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPJIB-04A-01R.exon.quantification.txt	3			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJIB-04A-01R	RNA	EFO	SRS602073	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJIB-04A-01R A32670 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32670	SRX543449	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJIB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPJIB-04A-01R A32670 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2255-1./A32670.fastq	SRR1791070	@dbgap@:reads/SRP011999/SRS602073/SRX543449/SRR1791070/SRR1791070.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_6_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288016	@dbgap@:reads/SRP011999/SRS602073/SRX543449/SRR1288016/SRR1288016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPJIB-04A-01R.gene.quantification.txt	3			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJIB-04A-01R	RNA	EFO	SRS602073	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJIB-04A-01R A32670 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32670	SRX543449	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJIB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPJIB-04A-01R A32670 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2255-1./A32670.fastq	SRR1791070	@dbgap@:reads/SRP011999/SRS602073/SRX543449/SRR1791070/SRR1791070.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_6_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288016	@dbgap@:reads/SRP011999/SRS602073/SRX543449/SRR1288016/SRR1288016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPJIB-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJIB-04A-01R	RNA	EFO	SRS602073	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJIB-04A-01R A32670 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32670	SRX543449	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJIB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPJIB-04A-01R A32670 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2255-1./A32670.fastq	SRR1791070	@dbgap@:reads/SRP011999/SRS602073/SRX543449/SRR1791070/SRR1791070.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_6_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288016	@dbgap@:reads/SRP011999/SRS602073/SRX543449/SRR1288016/SRR1288016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPJIB-04A-01R.fusion.vcf	3			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJIB-04A-01R	RNA	EFO	SRS602073	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJIB-04A-01R A32670 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32670	SRX543449	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJIB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPJIB-04A-01R A32670 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2255-1./A32670.fastq	SRR1791070	@dbgap@:reads/SRP011999/SRS602073/SRX543449/SRR1791070/SRR1791070.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_6_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288016	@dbgap@:reads/SRP011999/SRS602073/SRX543449/SRR1288016/SRR1288016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPJIB-04A-01R.indel.vcf	3			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJIB-04A-01R	RNA	EFO	SRS602073	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJIB-04A-01R A32670 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32670	SRX543449	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJIB-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPJIB-04A-01R A32670 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2255-1./A32670.fastq	SRR1791070	@dbgap@:reads/SRP011999/SRS602073/SRX543449/SRR1791070/SRR1791070.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_6_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288016	@dbgap@:reads/SRP011999/SRS602073/SRX543449/SRR1288016/SRR1288016.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPJIB-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJIB-09A-01R	RNA	EFO	SRS602025	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJIB-09A-01R A32671 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32671	SRX543433	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJIB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPJIB-09A-01R A32671 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2253-1./A32671.fastq	SRR1797096	@dbgap@:reads/SRP011999/SRS602025/SRX543433/SRR1797096/SRR1797096.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_4_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288035	@dbgap@:reads/SRP011999/SRS602025/SRX543433/SRR1288035/SRR1288035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPJIB-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJIB-09A-01R	RNA	EFO	SRS602025	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJIB-09A-01R A32671 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32671	SRX543433	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJIB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPJIB-09A-01R A32671 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2253-1./A32671.fastq	SRR1797096	@dbgap@:reads/SRP011999/SRS602025/SRX543433/SRR1797096/SRR1797096.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_4_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288035	@dbgap@:reads/SRP011999/SRS602025/SRX543433/SRR1288035/SRR1288035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPJIB-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJIB-09A-01R	RNA	EFO	SRS602025	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJIB-09A-01R A32671 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32671	SRX543433	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJIB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPJIB-09A-01R A32671 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2253-1./A32671.fastq	SRR1797096	@dbgap@:reads/SRP011999/SRS602025/SRX543433/SRR1797096/SRR1797096.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_4_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288035	@dbgap@:reads/SRP011999/SRS602025/SRX543433/SRR1288035/SRR1288035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPJIB-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJIB-09A-01R	RNA	EFO	SRS602025	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJIB-09A-01R A32671 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32671	SRX543433	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJIB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPJIB-09A-01R A32671 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2253-1./A32671.fastq	SRR1797096	@dbgap@:reads/SRP011999/SRS602025/SRX543433/SRR1797096/SRR1797096.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_4_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288035	@dbgap@:reads/SRP011999/SRS602025/SRX543433/SRR1288035/SRR1288035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPJIB-09A-01R.fusion.vcf	3			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJIB-09A-01R	RNA	EFO	SRS602025	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJIB-09A-01R A32671 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32671	SRX543433	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJIB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPJIB-09A-01R A32671 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2253-1./A32671.fastq	SRR1797096	@dbgap@:reads/SRP011999/SRS602025/SRX543433/SRR1797096/SRR1797096.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_4_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288035	@dbgap@:reads/SRP011999/SRS602025/SRX543433/SRR1288035/SRR1288035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPJIB-09A-01R.indel.vcf	3			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJIB-09A-01R	RNA	EFO	SRS602025	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJIB-09A-01R A32671 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32671	SRX543433	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJIB-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPJIB-09A-01R A32671 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2253-1./A32671.fastq	SRR1797096	@dbgap@:reads/SRP011999/SRS602025/SRX543433/SRR1797096/SRR1797096.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_4_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288035	@dbgap@:reads/SRP011999/SRS602025/SRX543433/SRR1288035/SRR1288035.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPJIB-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJXI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJXI-04A-01R	RNA	EFO	SRS602039	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJXI-04A-01R A32642 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32642	SRX543469	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJXI-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPJXI-04A-01R A32642 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2223-1./A32642.fastq	SRR1791098	@dbgap@:reads/SRP011999/SRS602039/SRX543469/SRR1791098/SRR1791098.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_4_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288055	@dbgap@:reads/SRP011999/SRS602039/SRX543469/SRR1288055/SRR1288055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPJXI-04A-01R.exon.quantification.txt	3			
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJXI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJXI-04A-01R	RNA	EFO	SRS602039	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJXI-04A-01R A32642 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32642	SRX543469	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJXI-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPJXI-04A-01R A32642 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2223-1./A32642.fastq	SRR1791098	@dbgap@:reads/SRP011999/SRS602039/SRX543469/SRR1791098/SRR1791098.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_4_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288055	@dbgap@:reads/SRP011999/SRS602039/SRX543469/SRR1288055/SRR1288055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPJXI-04A-01R.gene.quantification.txt	3			
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJXI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJXI-04A-01R	RNA	EFO	SRS602039	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJXI-04A-01R A32642 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32642	SRX543469	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJXI-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPJXI-04A-01R A32642 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2223-1./A32642.fastq	SRR1791098	@dbgap@:reads/SRP011999/SRS602039/SRX543469/SRR1791098/SRR1791098.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_4_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288055	@dbgap@:reads/SRP011999/SRS602039/SRX543469/SRR1288055/SRR1288055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPJXI-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJXI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJXI-04A-01R	RNA	EFO	SRS602039	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJXI-04A-01R A32642 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32642	SRX543469	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJXI-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPJXI-04A-01R A32642 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2223-1./A32642.fastq	SRR1791098	@dbgap@:reads/SRP011999/SRS602039/SRX543469/SRR1791098/SRR1791098.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_4_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288055	@dbgap@:reads/SRP011999/SRS602039/SRX543469/SRR1288055/SRR1288055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPJXI-04A-01R.fusion.vcf	3			
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJXI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJXI-04A-01R	RNA	EFO	SRS602039	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJXI-04A-01R A32642 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32642	SRX543469	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJXI-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPJXI-04A-01R A32642 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2223-1./A32642.fastq	SRR1791098	@dbgap@:reads/SRP011999/SRS602039/SRX543469/SRR1791098/SRR1791098.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_4_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288055	@dbgap@:reads/SRP011999/SRS602039/SRX543469/SRR1288055/SRR1288055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPJXI-04A-01R.indel.vcf	3			
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJXI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJXI-04A-01R	RNA	EFO	SRS602039	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJXI-04A-01R A32642 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32642	SRX543469	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJXI-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPJXI-04A-01R A32642 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2223-1./A32642.fastq	SRR1791098	@dbgap@:reads/SRP011999/SRS602039/SRX543469/SRR1791098/SRR1791098.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_4_TGCTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288055	@dbgap@:reads/SRP011999/SRS602039/SRX543469/SRR1288055/SRR1288055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPJXI-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJXI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJXI-09A-01R	RNA	EFO	SRS602029	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJXI-09A-01R A32643 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32643	SRX543455	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJXI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPJXI-09A-01R A32643 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2232-1./A32643.fastq	SRR1797077	@dbgap@:reads/SRP011999/SRS602029/SRX543455/SRR1797077/SRR1797077.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_5_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288024	@dbgap@:reads/SRP011999/SRS602029/SRX543455/SRR1288024/SRR1288024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPJXI-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJXI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJXI-09A-01R	RNA	EFO	SRS602029	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJXI-09A-01R A32643 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32643	SRX543455	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJXI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPJXI-09A-01R A32643 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2232-1./A32643.fastq	SRR1797077	@dbgap@:reads/SRP011999/SRS602029/SRX543455/SRR1797077/SRR1797077.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_5_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288024	@dbgap@:reads/SRP011999/SRS602029/SRX543455/SRR1288024/SRR1288024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPJXI-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJXI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJXI-09A-01R	RNA	EFO	SRS602029	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJXI-09A-01R A32643 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32643	SRX543455	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJXI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPJXI-09A-01R A32643 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2232-1./A32643.fastq	SRR1797077	@dbgap@:reads/SRP011999/SRS602029/SRX543455/SRR1797077/SRR1797077.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_5_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288024	@dbgap@:reads/SRP011999/SRS602029/SRX543455/SRR1288024/SRR1288024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPJXI-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJXI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJXI-09A-01R	RNA	EFO	SRS602029	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJXI-09A-01R A32643 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32643	SRX543455	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJXI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPJXI-09A-01R A32643 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2232-1./A32643.fastq	SRR1797077	@dbgap@:reads/SRP011999/SRS602029/SRX543455/SRR1797077/SRR1797077.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_5_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288024	@dbgap@:reads/SRP011999/SRS602029/SRX543455/SRR1288024/SRR1288024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPJXI-09A-01R.fusion.vcf	3			
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJXI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJXI-09A-01R	RNA	EFO	SRS602029	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJXI-09A-01R A32643 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32643	SRX543455	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJXI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPJXI-09A-01R A32643 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2232-1./A32643.fastq	SRR1797077	@dbgap@:reads/SRP011999/SRS602029/SRX543455/SRR1797077/SRR1797077.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_5_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288024	@dbgap@:reads/SRP011999/SRS602029/SRX543455/SRR1288024/SRR1288024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPJXI-09A-01R.indel.vcf	3			
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJXI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJXI-09A-01R	RNA	EFO	SRS602029	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPJXI-09A-01R A32643 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32643	SRX543455	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPJXI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPJXI-09A-01R A32643 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2232-1./A32643.fastq	SRR1797077	@dbgap@:reads/SRP011999/SRS602029/SRX543455/SRR1797077/SRR1797077.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_5_CCGTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288024	@dbgap@:reads/SRP011999/SRS602029/SRX543455/SRR1288024/SRR1288024.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPJXI-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPKNC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNC-09A-01R	RNA	EFO	SRS602133	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNC-09A-01R A32745 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32745	SRX547601	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPKNC-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPKNC-09A-01R A32745 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2278-1./A32745.fastq	SRR1791112	@dbgap@:reads/SRP011999/SRS602133/SRX547601/SRR1791112/SRR1791112.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_5_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293014	@dbgap@:reads/SRP011999/SRS602133/SRX547601/SRR1293014/SRR1293014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPKNC-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPKNC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNC-09A-01R	RNA	EFO	SRS602133	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNC-09A-01R A32745 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32745	SRX547601	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPKNC-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPKNC-09A-01R A32745 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2278-1./A32745.fastq	SRR1791112	@dbgap@:reads/SRP011999/SRS602133/SRX547601/SRR1791112/SRR1791112.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_5_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293014	@dbgap@:reads/SRP011999/SRS602133/SRX547601/SRR1293014/SRR1293014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPKNC-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPKNC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNC-09A-01R	RNA	EFO	SRS602133	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNC-09A-01R A32745 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32745	SRX547601	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPKNC-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPKNC-09A-01R A32745 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2278-1./A32745.fastq	SRR1791112	@dbgap@:reads/SRP011999/SRS602133/SRX547601/SRR1791112/SRR1791112.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_5_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293014	@dbgap@:reads/SRP011999/SRS602133/SRX547601/SRR1293014/SRR1293014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPKNC-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPKNC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNC-09A-01R	RNA	EFO	SRS602133	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNC-09A-01R A32745 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32745	SRX547601	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPKNC-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPKNC-09A-01R A32745 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2278-1./A32745.fastq	SRR1791112	@dbgap@:reads/SRP011999/SRS602133/SRX547601/SRR1791112/SRR1791112.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_5_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293014	@dbgap@:reads/SRP011999/SRS602133/SRX547601/SRR1293014/SRR1293014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPKNC-09A-01R.fusion.vcf	3			
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPKNC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNC-09A-01R	RNA	EFO	SRS602133	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNC-09A-01R A32745 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32745	SRX547601	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPKNC-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPKNC-09A-01R A32745 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2278-1./A32745.fastq	SRR1791112	@dbgap@:reads/SRP011999/SRS602133/SRX547601/SRR1791112/SRR1791112.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_5_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293014	@dbgap@:reads/SRP011999/SRS602133/SRX547601/SRR1293014/SRR1293014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPKNC-09A-01R.indel.vcf	3			
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPKNC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNC-09A-01R	RNA	EFO	SRS602133	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNC-09A-01R A32745 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32745	SRX547601	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPKNC-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPKNC-09A-01R A32745 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2278-1./A32745.fastq	SRR1791112	@dbgap@:reads/SRP011999/SRS602133/SRX547601/SRR1791112/SRR1791112.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_5_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293014	@dbgap@:reads/SRP011999/SRS602133/SRX547601/SRR1293014/SRR1293014.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPKNC-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDL-03A-01R	RNA	EFO	SRS602081	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDL-03A-01R A32672 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32672	SRX543460	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLDL-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPLDL-03A-01R A32672 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2234-1./A32672.fastq	SRR1791088	@dbgap@:reads/SRP011999/SRS602081/SRX543460/SRR1791088/SRR1791088.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_1_GAATAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288057	@dbgap@:reads/SRP011999/SRS602081/SRX543460/SRR1288057/SRR1288057.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPLDL-03A-01R.exon.quantification.txt	3			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDL-03A-01R	RNA	EFO	SRS602081	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDL-03A-01R A32672 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32672	SRX543460	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLDL-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPLDL-03A-01R A32672 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2234-1./A32672.fastq	SRR1791088	@dbgap@:reads/SRP011999/SRS602081/SRX543460/SRR1791088/SRR1791088.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_1_GAATAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288057	@dbgap@:reads/SRP011999/SRS602081/SRX543460/SRR1288057/SRR1288057.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPLDL-03A-01R.gene.quantification.txt	3			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDL-03A-01R	RNA	EFO	SRS602081	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDL-03A-01R A32672 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32672	SRX543460	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLDL-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPLDL-03A-01R A32672 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2234-1./A32672.fastq	SRR1791088	@dbgap@:reads/SRP011999/SRS602081/SRX543460/SRR1791088/SRR1791088.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_1_GAATAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288057	@dbgap@:reads/SRP011999/SRS602081/SRX543460/SRR1288057/SRR1288057.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPLDL-03A-01R.isoform.quantification.txt	3			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDL-03A-01R	RNA	EFO	SRS602081	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDL-03A-01R A32672 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32672	SRX543460	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLDL-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPLDL-03A-01R A32672 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2234-1./A32672.fastq	SRR1791088	@dbgap@:reads/SRP011999/SRS602081/SRX543460/SRR1791088/SRR1791088.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_1_GAATAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288057	@dbgap@:reads/SRP011999/SRS602081/SRX543460/SRR1288057/SRR1288057.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPLDL-03A-01R.fusion.vcf	3			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDL-03A-01R	RNA	EFO	SRS602081	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDL-03A-01R A32672 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32672	SRX543460	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLDL-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPLDL-03A-01R A32672 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2234-1./A32672.fastq	SRR1791088	@dbgap@:reads/SRP011999/SRS602081/SRX543460/SRR1791088/SRR1791088.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_1_GAATAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288057	@dbgap@:reads/SRP011999/SRS602081/SRX543460/SRR1288057/SRR1288057.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPLDL-03A-01R.indel.vcf	3			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDL-03A-01R	RNA	EFO	SRS602081	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDL-03A-01R A32672 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32672	SRX543460	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLDL-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPLDL-03A-01R A32672 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2234-1./A32672.fastq	SRR1791088	@dbgap@:reads/SRP011999/SRS602081/SRX543460/SRR1791088/SRR1791088.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_1_GAATAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288057	@dbgap@:reads/SRP011999/SRS602081/SRX543460/SRR1288057/SRR1288057.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPLDL-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDL-04A-01R	RNA	EFO	SRS602064	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDL-04A-01R A32673 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32673	SRX543388	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLDL-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPLDL-04A-01R A32673 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2238-1./A32673.fastq	SRR1797080	@dbgap@:reads/SRP011999/SRS602064/SRX543388/SRR1797080/SRR1797080.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_5_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288040	@dbgap@:reads/SRP011999/SRS602064/SRX543388/SRR1288040/SRR1288040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPLDL-04A-01R.exon.quantification.txt	3			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDL-04A-01R	RNA	EFO	SRS602064	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDL-04A-01R A32673 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32673	SRX543388	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLDL-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPLDL-04A-01R A32673 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2238-1./A32673.fastq	SRR1797080	@dbgap@:reads/SRP011999/SRS602064/SRX543388/SRR1797080/SRR1797080.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_5_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288040	@dbgap@:reads/SRP011999/SRS602064/SRX543388/SRR1288040/SRR1288040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPLDL-04A-01R.gene.quantification.txt	3			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDL-04A-01R	RNA	EFO	SRS602064	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDL-04A-01R A32673 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32673	SRX543388	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLDL-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPLDL-04A-01R A32673 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2238-1./A32673.fastq	SRR1797080	@dbgap@:reads/SRP011999/SRS602064/SRX543388/SRR1797080/SRR1797080.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_5_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288040	@dbgap@:reads/SRP011999/SRS602064/SRX543388/SRR1288040/SRR1288040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPLDL-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDL-04A-01R	RNA	EFO	SRS602064	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDL-04A-01R A32673 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32673	SRX543388	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLDL-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPLDL-04A-01R A32673 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2238-1./A32673.fastq	SRR1797080	@dbgap@:reads/SRP011999/SRS602064/SRX543388/SRR1797080/SRR1797080.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_5_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288040	@dbgap@:reads/SRP011999/SRS602064/SRX543388/SRR1288040/SRR1288040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPLDL-04A-01R.fusion.vcf	3			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDL-04A-01R	RNA	EFO	SRS602064	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDL-04A-01R A32673 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32673	SRX543388	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLDL-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPLDL-04A-01R A32673 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2238-1./A32673.fastq	SRR1797080	@dbgap@:reads/SRP011999/SRS602064/SRX543388/SRR1797080/SRR1797080.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_5_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288040	@dbgap@:reads/SRP011999/SRS602064/SRX543388/SRR1288040/SRR1288040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPLDL-04A-01R.indel.vcf	3			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDL-04A-01R	RNA	EFO	SRS602064	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDL-04A-01R A32673 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32673	SRX543388	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLDL-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPLDL-04A-01R A32673 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2238-1./A32673.fastq	SRR1797080	@dbgap@:reads/SRP011999/SRS602064/SRX543388/SRR1797080/SRR1797080.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_5_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288040	@dbgap@:reads/SRP011999/SRS602064/SRX543388/SRR1288040/SRR1288040.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPLDL-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDM-04A-01R	RNA	EFO	SRS602061	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDM-04A-01R A32649 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32649	SRX543459	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLDM-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPLDM-04A-01R A32649 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2225-1./A32649.fastq	SRR1791015	@dbgap@:reads/SRP011999/SRS602061/SRX543459/SRR1791015/SRR1791015.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_6_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288037	@dbgap@:reads/SRP011999/SRS602061/SRX543459/SRR1288037/SRR1288037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPLDM-04A-01R.exon.quantification.txt	3			
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDM-04A-01R	RNA	EFO	SRS602061	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDM-04A-01R A32649 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32649	SRX543459	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLDM-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPLDM-04A-01R A32649 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2225-1./A32649.fastq	SRR1791015	@dbgap@:reads/SRP011999/SRS602061/SRX543459/SRR1791015/SRR1791015.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_6_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288037	@dbgap@:reads/SRP011999/SRS602061/SRX543459/SRR1288037/SRR1288037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPLDM-04A-01R.gene.quantification.txt	3			
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDM-04A-01R	RNA	EFO	SRS602061	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDM-04A-01R A32649 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32649	SRX543459	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLDM-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPLDM-04A-01R A32649 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2225-1./A32649.fastq	SRR1791015	@dbgap@:reads/SRP011999/SRS602061/SRX543459/SRR1791015/SRR1791015.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_6_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288037	@dbgap@:reads/SRP011999/SRS602061/SRX543459/SRR1288037/SRR1288037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPLDM-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDM-04A-01R	RNA	EFO	SRS602061	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDM-04A-01R A32649 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32649	SRX543459	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLDM-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPLDM-04A-01R A32649 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2225-1./A32649.fastq	SRR1791015	@dbgap@:reads/SRP011999/SRS602061/SRX543459/SRR1791015/SRR1791015.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_6_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288037	@dbgap@:reads/SRP011999/SRS602061/SRX543459/SRR1288037/SRR1288037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPLDM-04A-01R.fusion.vcf	3			
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDM-04A-01R	RNA	EFO	SRS602061	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDM-04A-01R A32649 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32649	SRX543459	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLDM-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPLDM-04A-01R A32649 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2225-1./A32649.fastq	SRR1791015	@dbgap@:reads/SRP011999/SRS602061/SRX543459/SRR1791015/SRR1791015.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_6_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288037	@dbgap@:reads/SRP011999/SRS602061/SRX543459/SRR1288037/SRR1288037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPLDM-04A-01R.indel.vcf	3			
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDM-04A-01R	RNA	EFO	SRS602061	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLDM-04A-01R A32649 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32649	SRX543459	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLDM-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPLDM-04A-01R A32649 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2225-1./A32649.fastq	SRR1791015	@dbgap@:reads/SRP011999/SRS602061/SRX543459/SRR1791015/SRR1791015.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_6_GAGTGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288037	@dbgap@:reads/SRP011999/SRS602061/SRX543459/SRR1288037/SRR1288037.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPLDM-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLTZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLTZ-04A-01R	RNA	EFO	SRS602037	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLTZ-04A-01R A32674 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32674	SRX543448	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLTZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPLTZ-04A-01R A32674 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2221-1./A32674.fastq	SRR1797084	@dbgap@:reads/SRP011999/SRS602037/SRX543448/SRR1797084/SRR1797084.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_2_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288018	@dbgap@:reads/SRP011999/SRS602037/SRX543448/SRR1288018/SRR1288018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPLTZ-04A-01R.exon.quantification.txt	3			
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLTZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLTZ-04A-01R	RNA	EFO	SRS602037	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLTZ-04A-01R A32674 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32674	SRX543448	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLTZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPLTZ-04A-01R A32674 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2221-1./A32674.fastq	SRR1797084	@dbgap@:reads/SRP011999/SRS602037/SRX543448/SRR1797084/SRR1797084.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_2_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288018	@dbgap@:reads/SRP011999/SRS602037/SRX543448/SRR1288018/SRR1288018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPLTZ-04A-01R.gene.quantification.txt	3			
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLTZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLTZ-04A-01R	RNA	EFO	SRS602037	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLTZ-04A-01R A32674 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32674	SRX543448	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLTZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPLTZ-04A-01R A32674 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2221-1./A32674.fastq	SRR1797084	@dbgap@:reads/SRP011999/SRS602037/SRX543448/SRR1797084/SRR1797084.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_2_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288018	@dbgap@:reads/SRP011999/SRS602037/SRX543448/SRR1288018/SRR1288018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPLTZ-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLTZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLTZ-04A-01R	RNA	EFO	SRS602037	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLTZ-04A-01R A32674 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32674	SRX543448	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLTZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPLTZ-04A-01R A32674 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2221-1./A32674.fastq	SRR1797084	@dbgap@:reads/SRP011999/SRS602037/SRX543448/SRR1797084/SRR1797084.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_2_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288018	@dbgap@:reads/SRP011999/SRS602037/SRX543448/SRR1288018/SRR1288018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPLTZ-04A-01R.fusion.vcf	3			
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLTZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLTZ-04A-01R	RNA	EFO	SRS602037	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLTZ-04A-01R A32674 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32674	SRX543448	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLTZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPLTZ-04A-01R A32674 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2221-1./A32674.fastq	SRR1797084	@dbgap@:reads/SRP011999/SRS602037/SRX543448/SRR1797084/SRR1797084.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_2_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288018	@dbgap@:reads/SRP011999/SRS602037/SRX543448/SRR1288018/SRR1288018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPLTZ-04A-01R.indel.vcf	3			
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLTZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLTZ-04A-01R	RNA	EFO	SRS602037	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLTZ-04A-01R A32674 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32674	SRX543448	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLTZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPLTZ-04A-01R A32674 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2221-1./A32674.fastq	SRR1797084	@dbgap@:reads/SRP011999/SRS602037/SRX543448/SRR1797084/SRR1797084.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_2_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288018	@dbgap@:reads/SRP011999/SRS602037/SRX543448/SRR1288018/SRR1288018.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPLTZ-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLTZ-09A-01R	RNA	EFO	SRS602093	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLTZ-09A-01R A32675 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32675	SRX543405	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLTZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPLTZ-09A-01R A32675 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2222-1./A32675.fastq	SRR1797091	@dbgap@:reads/SRP011999/SRS602093/SRX543405/SRR1797091/SRR1797091.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_3_TTCTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288047	@dbgap@:reads/SRP011999/SRS602093/SRX543405/SRR1288047/SRR1288047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPLTZ-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLTZ-09A-01R	RNA	EFO	SRS602093	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLTZ-09A-01R A32675 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32675	SRX543405	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLTZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPLTZ-09A-01R A32675 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2222-1./A32675.fastq	SRR1797091	@dbgap@:reads/SRP011999/SRS602093/SRX543405/SRR1797091/SRR1797091.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_3_TTCTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288047	@dbgap@:reads/SRP011999/SRS602093/SRX543405/SRR1288047/SRR1288047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPLTZ-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLTZ-09A-01R	RNA	EFO	SRS602093	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLTZ-09A-01R A32675 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32675	SRX543405	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLTZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPLTZ-09A-01R A32675 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2222-1./A32675.fastq	SRR1797091	@dbgap@:reads/SRP011999/SRS602093/SRX543405/SRR1797091/SRR1797091.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_3_TTCTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288047	@dbgap@:reads/SRP011999/SRS602093/SRX543405/SRR1288047/SRR1288047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPLTZ-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLTZ-09A-01R	RNA	EFO	SRS602093	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLTZ-09A-01R A32675 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32675	SRX543405	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLTZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPLTZ-09A-01R A32675 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2222-1./A32675.fastq	SRR1797091	@dbgap@:reads/SRP011999/SRS602093/SRX543405/SRR1797091/SRR1797091.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_3_TTCTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288047	@dbgap@:reads/SRP011999/SRS602093/SRX543405/SRR1288047/SRR1288047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPLTZ-09A-01R.fusion.vcf	3			
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLTZ-09A-01R	RNA	EFO	SRS602093	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLTZ-09A-01R A32675 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32675	SRX543405	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLTZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPLTZ-09A-01R A32675 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2222-1./A32675.fastq	SRR1797091	@dbgap@:reads/SRP011999/SRS602093/SRX543405/SRR1797091/SRR1797091.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_3_TTCTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288047	@dbgap@:reads/SRP011999/SRS602093/SRX543405/SRR1288047/SRR1288047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPLTZ-09A-01R.indel.vcf	3			
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLTZ-09A-01R	RNA	EFO	SRS602093	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLTZ-09A-01R A32675 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32675	SRX543405	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLTZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPLTZ-09A-01R A32675 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2222-1./A32675.fastq	SRR1797091	@dbgap@:reads/SRP011999/SRS602093/SRX543405/SRR1797091/SRR1797091.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_3_TTCTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288047	@dbgap@:reads/SRP011999/SRS602093/SRX543405/SRR1288047/SRR1288047.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPLTZ-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLUG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLUG-09A-01R	RNA	EFO	SRS602152	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLUG-09A-01R A32771 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32771	SRX547636	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLUG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPLUG-09A-01R A32771 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2264-1./A32771.fastq	SRR1797090	@dbgap@:reads/SRP011999/SRS602152/SRX547636/SRR1797090/SRR1797090.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_6_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293002	@dbgap@:reads/SRP011999/SRS602152/SRX547636/SRR1293002/SRR1293002.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPLUG-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLUG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLUG-09A-01R	RNA	EFO	SRS602152	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLUG-09A-01R A32771 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32771	SRX547636	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLUG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPLUG-09A-01R A32771 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2264-1./A32771.fastq	SRR1797090	@dbgap@:reads/SRP011999/SRS602152/SRX547636/SRR1797090/SRR1797090.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_6_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293002	@dbgap@:reads/SRP011999/SRS602152/SRX547636/SRR1293002/SRR1293002.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPLUG-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLUG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLUG-09A-01R	RNA	EFO	SRS602152	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLUG-09A-01R A32771 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32771	SRX547636	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLUG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPLUG-09A-01R A32771 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2264-1./A32771.fastq	SRR1797090	@dbgap@:reads/SRP011999/SRS602152/SRX547636/SRR1797090/SRR1797090.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_6_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293002	@dbgap@:reads/SRP011999/SRS602152/SRX547636/SRR1293002/SRR1293002.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPLUG-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLUG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLUG-09A-01R	RNA	EFO	SRS602152	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLUG-09A-01R A32771 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32771	SRX547636	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLUG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPLUG-09A-01R A32771 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2264-1./A32771.fastq	SRR1797090	@dbgap@:reads/SRP011999/SRS602152/SRX547636/SRR1797090/SRR1797090.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_6_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293002	@dbgap@:reads/SRP011999/SRS602152/SRX547636/SRR1293002/SRR1293002.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPLUG-09A-01R.fusion.vcf	3			
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLUG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLUG-09A-01R	RNA	EFO	SRS602152	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLUG-09A-01R A32771 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32771	SRX547636	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLUG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPLUG-09A-01R A32771 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2264-1./A32771.fastq	SRR1797090	@dbgap@:reads/SRP011999/SRS602152/SRX547636/SRR1797090/SRR1797090.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_6_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293002	@dbgap@:reads/SRP011999/SRS602152/SRX547636/SRR1293002/SRR1293002.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPLUG-09A-01R.indel.vcf	3			
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLUG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLUG-09A-01R	RNA	EFO	SRS602152	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPLUG-09A-01R A32771 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32771	SRX547636	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPLUG-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPLUG-09A-01R A32771 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2264-1./A32771.fastq	SRR1797090	@dbgap@:reads/SRP011999/SRS602152/SRX547636/SRR1797090/SRR1797090.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_6_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293002	@dbgap@:reads/SRP011999/SRS602152/SRX547636/SRR1293002/SRR1293002.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPLUG-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPMFI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMFI-04A-02R	RNA	EFO	SRS602238	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMFI-04A-02R A33620 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33620	SRX547659	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPMFI-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPMFI-04A-02R A33620 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2185-1./A33620.fastq	SRR1791032	@dbgap@:reads/SRP011999/SRS602238/SRX547659/SRR1791032/SRR1791032.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_1_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293052	@dbgap@:reads/SRP011999/SRS602238/SRX547659/SRR1293052/SRR1293052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPMFI-04A-02R.exon.quantification.txt	3			
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPMFI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMFI-04A-02R	RNA	EFO	SRS602238	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMFI-04A-02R A33620 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33620	SRX547659	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPMFI-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPMFI-04A-02R A33620 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2185-1./A33620.fastq	SRR1791032	@dbgap@:reads/SRP011999/SRS602238/SRX547659/SRR1791032/SRR1791032.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_1_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293052	@dbgap@:reads/SRP011999/SRS602238/SRX547659/SRR1293052/SRR1293052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPMFI-04A-02R.gene.quantification.txt	3			
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPMFI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMFI-04A-02R	RNA	EFO	SRS602238	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMFI-04A-02R A33620 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33620	SRX547659	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPMFI-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPMFI-04A-02R A33620 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2185-1./A33620.fastq	SRR1791032	@dbgap@:reads/SRP011999/SRS602238/SRX547659/SRR1791032/SRR1791032.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_1_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293052	@dbgap@:reads/SRP011999/SRS602238/SRX547659/SRR1293052/SRR1293052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPMFI-04A-02R.isoform.quantification.txt	3			
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPMFI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMFI-04A-02R	RNA	EFO	SRS602238	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMFI-04A-02R A33620 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33620	SRX547659	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPMFI-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPMFI-04A-02R A33620 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2185-1./A33620.fastq	SRR1791032	@dbgap@:reads/SRP011999/SRS602238/SRX547659/SRR1791032/SRR1791032.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_1_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293052	@dbgap@:reads/SRP011999/SRS602238/SRX547659/SRR1293052/SRR1293052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPMFI-04A-02R.fusion.vcf	3			
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPMFI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMFI-04A-02R	RNA	EFO	SRS602238	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMFI-04A-02R A33620 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33620	SRX547659	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPMFI-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPMFI-04A-02R A33620 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2185-1./A33620.fastq	SRR1791032	@dbgap@:reads/SRP011999/SRS602238/SRX547659/SRR1791032/SRR1791032.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_1_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293052	@dbgap@:reads/SRP011999/SRS602238/SRX547659/SRR1293052/SRR1293052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPMFI-04A-02R.indel.vcf	3			
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPMFI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMFI-04A-02R	RNA	EFO	SRS602238	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMFI-04A-02R A33620 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33620	SRX547659	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPMFI-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPMFI-04A-02R A33620 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2185-1./A33620.fastq	SRR1791032	@dbgap@:reads/SRP011999/SRS602238/SRX547659/SRR1791032/SRR1791032.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_1_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293052	@dbgap@:reads/SRP011999/SRS602238/SRX547659/SRR1293052/SRR1293052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPMFI-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPMVB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMVB-04A-02R	RNA	EFO	SRS602225	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMVB-04A-02R A33606 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33606	SRX547663	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPMVB-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPMVB-04A-02R A33606 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2179-1./A33606.fastq	SRR1791006	@dbgap@:reads/SRP011999/SRS602225/SRX547663/SRR1791006/SRR1791006.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_3_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293039	@dbgap@:reads/SRP011999/SRS602225/SRX547663/SRR1293039/SRR1293039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPMVB-04A-02R.exon.quantification.txt	3			
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPMVB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMVB-04A-02R	RNA	EFO	SRS602225	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMVB-04A-02R A33606 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33606	SRX547663	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPMVB-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPMVB-04A-02R A33606 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2179-1./A33606.fastq	SRR1791006	@dbgap@:reads/SRP011999/SRS602225/SRX547663/SRR1791006/SRR1791006.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_3_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293039	@dbgap@:reads/SRP011999/SRS602225/SRX547663/SRR1293039/SRR1293039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPMVB-04A-02R.gene.quantification.txt	3			
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPMVB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMVB-04A-02R	RNA	EFO	SRS602225	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMVB-04A-02R A33606 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33606	SRX547663	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPMVB-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPMVB-04A-02R A33606 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2179-1./A33606.fastq	SRR1791006	@dbgap@:reads/SRP011999/SRS602225/SRX547663/SRR1791006/SRR1791006.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_3_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293039	@dbgap@:reads/SRP011999/SRS602225/SRX547663/SRR1293039/SRR1293039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPMVB-04A-02R.isoform.quantification.txt	3			
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPMVB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMVB-04A-02R	RNA	EFO	SRS602225	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMVB-04A-02R A33606 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33606	SRX547663	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPMVB-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPMVB-04A-02R A33606 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2179-1./A33606.fastq	SRR1791006	@dbgap@:reads/SRP011999/SRS602225/SRX547663/SRR1791006/SRR1791006.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_3_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293039	@dbgap@:reads/SRP011999/SRS602225/SRX547663/SRR1293039/SRR1293039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPMVB-04A-02R.fusion.vcf	3			
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPMVB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMVB-04A-02R	RNA	EFO	SRS602225	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMVB-04A-02R A33606 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33606	SRX547663	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPMVB-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPMVB-04A-02R A33606 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2179-1./A33606.fastq	SRR1791006	@dbgap@:reads/SRP011999/SRS602225/SRX547663/SRR1791006/SRR1791006.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_3_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293039	@dbgap@:reads/SRP011999/SRS602225/SRX547663/SRR1293039/SRR1293039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPMVB-04A-02R.indel.vcf	3			
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPMVB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMVB-04A-02R	RNA	EFO	SRS602225	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMVB-04A-02R A33606 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33606	SRX547663	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPMVB-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPMVB-04A-02R A33606 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2179-1./A33606.fastq	SRR1791006	@dbgap@:reads/SRP011999/SRS602225/SRX547663/SRR1791006/SRR1791006.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_3_AAGACT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293039	@dbgap@:reads/SRP011999/SRS602225/SRX547663/SRR1293039/SRR1293039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPMVB-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPMVB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMVB-09A-02R	RNA	EFO	SRS602199	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMVB-09A-02R A33607 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33607	SRX547688	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPMVB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPMVB-09A-02R A33607 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2195-1./A33607.fastq	SRR1797067	@dbgap@:reads/SRP011999/SRS602199/SRX547688/SRR1797067/SRR1797067.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_3_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293062	@dbgap@:reads/SRP011999/SRS602199/SRX547688/SRR1293062/SRR1293062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPMVB-09A-02R.exon.quantification.txt	3			
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPMVB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMVB-09A-02R	RNA	EFO	SRS602199	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMVB-09A-02R A33607 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33607	SRX547688	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPMVB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPMVB-09A-02R A33607 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2195-1./A33607.fastq	SRR1797067	@dbgap@:reads/SRP011999/SRS602199/SRX547688/SRR1797067/SRR1797067.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_3_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293062	@dbgap@:reads/SRP011999/SRS602199/SRX547688/SRR1293062/SRR1293062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPMVB-09A-02R.gene.quantification.txt	3			
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPMVB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMVB-09A-02R	RNA	EFO	SRS602199	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMVB-09A-02R A33607 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33607	SRX547688	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPMVB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPMVB-09A-02R A33607 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2195-1./A33607.fastq	SRR1797067	@dbgap@:reads/SRP011999/SRS602199/SRX547688/SRR1797067/SRR1797067.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_3_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293062	@dbgap@:reads/SRP011999/SRS602199/SRX547688/SRR1293062/SRR1293062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPMVB-09A-02R.isoform.quantification.txt	3			
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPMVB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMVB-09A-02R	RNA	EFO	SRS602199	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMVB-09A-02R A33607 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33607	SRX547688	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPMVB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPMVB-09A-02R A33607 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2195-1./A33607.fastq	SRR1797067	@dbgap@:reads/SRP011999/SRS602199/SRX547688/SRR1797067/SRR1797067.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_3_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293062	@dbgap@:reads/SRP011999/SRS602199/SRX547688/SRR1293062/SRR1293062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPMVB-09A-02R.fusion.vcf	3			
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPMVB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMVB-09A-02R	RNA	EFO	SRS602199	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMVB-09A-02R A33607 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33607	SRX547688	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPMVB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPMVB-09A-02R A33607 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2195-1./A33607.fastq	SRR1797067	@dbgap@:reads/SRP011999/SRS602199/SRX547688/SRR1797067/SRR1797067.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_3_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293062	@dbgap@:reads/SRP011999/SRS602199/SRX547688/SRR1293062/SRR1293062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPMVB-09A-02R.indel.vcf	3			
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPMVB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMVB-09A-02R	RNA	EFO	SRS602199	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMVB-09A-02R A33607 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33607	SRX547688	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPMVB-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPMVB-09A-02R A33607 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2195-1./A33607.fastq	SRR1797067	@dbgap@:reads/SRP011999/SRS602199/SRX547688/SRR1797067/SRR1797067.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_3_ACGATA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293062	@dbgap@:reads/SRP011999/SRS602199/SRX547688/SRR1293062/SRR1293062.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPMVB-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPMYD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMYD-03A-01R	RNA	EFO	SRS602135	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMYD-03A-01R A32746 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32746	SRX547578	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPMYD-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPMYD-03A-01R A32746 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2273-1./A32746.fastq	SRR1797111	@dbgap@:reads/SRP011999/SRS602135/SRX547578/SRR1797111/SRR1797111.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_8_GCCGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292988	@dbgap@:reads/SRP011999/SRS602135/SRX547578/SRR1292988/SRR1292988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPMYD-03A-01R.exon.quantification.txt	3			
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPMYD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMYD-03A-01R	RNA	EFO	SRS602135	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMYD-03A-01R A32746 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32746	SRX547578	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPMYD-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPMYD-03A-01R A32746 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2273-1./A32746.fastq	SRR1797111	@dbgap@:reads/SRP011999/SRS602135/SRX547578/SRR1797111/SRR1797111.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_8_GCCGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292988	@dbgap@:reads/SRP011999/SRS602135/SRX547578/SRR1292988/SRR1292988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPMYD-03A-01R.gene.quantification.txt	3			
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPMYD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMYD-03A-01R	RNA	EFO	SRS602135	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMYD-03A-01R A32746 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32746	SRX547578	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPMYD-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPMYD-03A-01R A32746 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2273-1./A32746.fastq	SRR1797111	@dbgap@:reads/SRP011999/SRS602135/SRX547578/SRR1797111/SRR1797111.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_8_GCCGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292988	@dbgap@:reads/SRP011999/SRS602135/SRX547578/SRR1292988/SRR1292988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPMYD-03A-01R.isoform.quantification.txt	3			
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPMYD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMYD-03A-01R	RNA	EFO	SRS602135	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMYD-03A-01R A32746 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32746	SRX547578	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPMYD-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPMYD-03A-01R A32746 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2273-1./A32746.fastq	SRR1797111	@dbgap@:reads/SRP011999/SRS602135/SRX547578/SRR1797111/SRR1797111.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_8_GCCGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292988	@dbgap@:reads/SRP011999/SRS602135/SRX547578/SRR1292988/SRR1292988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPMYD-03A-01R.fusion.vcf	3			
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPMYD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMYD-03A-01R	RNA	EFO	SRS602135	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMYD-03A-01R A32746 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32746	SRX547578	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPMYD-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPMYD-03A-01R A32746 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2273-1./A32746.fastq	SRR1797111	@dbgap@:reads/SRP011999/SRS602135/SRX547578/SRR1797111/SRR1797111.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_8_GCCGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292988	@dbgap@:reads/SRP011999/SRS602135/SRX547578/SRR1292988/SRR1292988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPMYD-03A-01R.indel.vcf	3			
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPMYD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMYD-03A-01R	RNA	EFO	SRS602135	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPMYD-03A-01R A32746 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32746	SRX547578	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPMYD-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPMYD-03A-01R A32746 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2273-1./A32746.fastq	SRR1797111	@dbgap@:reads/SRP011999/SRS602135/SRX547578/SRR1797111/SRR1797111.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_8_GCCGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292988	@dbgap@:reads/SRP011999/SRS602135/SRX547578/SRR1292988/SRR1292988.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPMYD-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNFY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNFY-03A-02R	RNA	EFO	SRS602232	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNFY-03A-02R A33608 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33608	SRX547679	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNFY-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPNFY-03A-02R A33608 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2177-1./A33608.fastq	SRR1797073	@dbgap@:reads/SRP011999/SRS602232/SRX547679/SRR1797073/SRR1797073.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_1_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293065	@dbgap@:reads/SRP011999/SRS602232/SRX547679/SRR1293065/SRR1293065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPNFY-03A-02R.exon.quantification.txt	3			
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNFY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNFY-03A-02R	RNA	EFO	SRS602232	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNFY-03A-02R A33608 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33608	SRX547679	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNFY-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPNFY-03A-02R A33608 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2177-1./A33608.fastq	SRR1797073	@dbgap@:reads/SRP011999/SRS602232/SRX547679/SRR1797073/SRR1797073.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_1_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293065	@dbgap@:reads/SRP011999/SRS602232/SRX547679/SRR1293065/SRR1293065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPNFY-03A-02R.gene.quantification.txt	3			
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNFY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNFY-03A-02R	RNA	EFO	SRS602232	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNFY-03A-02R A33608 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33608	SRX547679	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNFY-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPNFY-03A-02R A33608 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2177-1./A33608.fastq	SRR1797073	@dbgap@:reads/SRP011999/SRS602232/SRX547679/SRR1797073/SRR1797073.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_1_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293065	@dbgap@:reads/SRP011999/SRS602232/SRX547679/SRR1293065/SRR1293065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPNFY-03A-02R.isoform.quantification.txt	3			
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNFY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNFY-03A-02R	RNA	EFO	SRS602232	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNFY-03A-02R A33608 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33608	SRX547679	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNFY-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPNFY-03A-02R A33608 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2177-1./A33608.fastq	SRR1797073	@dbgap@:reads/SRP011999/SRS602232/SRX547679/SRR1797073/SRR1797073.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_1_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293065	@dbgap@:reads/SRP011999/SRS602232/SRX547679/SRR1293065/SRR1293065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPNFY-03A-02R.fusion.vcf	3			
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNFY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNFY-03A-02R	RNA	EFO	SRS602232	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNFY-03A-02R A33608 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33608	SRX547679	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNFY-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPNFY-03A-02R A33608 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2177-1./A33608.fastq	SRR1797073	@dbgap@:reads/SRP011999/SRS602232/SRX547679/SRR1797073/SRR1797073.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_1_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293065	@dbgap@:reads/SRP011999/SRS602232/SRX547679/SRR1293065/SRR1293065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPNFY-03A-02R.indel.vcf	3			
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNFY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNFY-03A-02R	RNA	EFO	SRS602232	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNFY-03A-02R A33608 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33608	SRX547679	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNFY-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPNFY-03A-02R A33608 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2177-1./A33608.fastq	SRR1797073	@dbgap@:reads/SRP011999/SRS602232/SRX547679/SRR1797073/SRR1797073.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_1_ATAATT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293065	@dbgap@:reads/SRP011999/SRS602232/SRX547679/SRR1293065/SRR1293065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPNFY-03A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNFY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNFY-04A-02R	RNA	EFO	SRS602191	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNFY-04A-02R A33611 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33611	SRX547642	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNFY-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPNFY-04A-02R A33611 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2195-1./A33611.fastq	SRR1797107	@dbgap@:reads/SRP011999/SRS602191/SRX547642/SRR1797107/SRR1797107.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_3_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293058	@dbgap@:reads/SRP011999/SRS602191/SRX547642/SRR1293058/SRR1293058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPNFY-04A-02R.exon.quantification.txt	3			
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNFY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNFY-04A-02R	RNA	EFO	SRS602191	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNFY-04A-02R A33611 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33611	SRX547642	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNFY-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPNFY-04A-02R A33611 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2195-1./A33611.fastq	SRR1797107	@dbgap@:reads/SRP011999/SRS602191/SRX547642/SRR1797107/SRR1797107.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_3_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293058	@dbgap@:reads/SRP011999/SRS602191/SRX547642/SRR1293058/SRR1293058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPNFY-04A-02R.gene.quantification.txt	3			
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNFY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNFY-04A-02R	RNA	EFO	SRS602191	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNFY-04A-02R A33611 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33611	SRX547642	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNFY-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPNFY-04A-02R A33611 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2195-1./A33611.fastq	SRR1797107	@dbgap@:reads/SRP011999/SRS602191/SRX547642/SRR1797107/SRR1797107.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_3_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293058	@dbgap@:reads/SRP011999/SRS602191/SRX547642/SRR1293058/SRR1293058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPNFY-04A-02R.isoform.quantification.txt	3			
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNFY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNFY-04A-02R	RNA	EFO	SRS602191	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNFY-04A-02R A33611 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33611	SRX547642	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNFY-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPNFY-04A-02R A33611 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2195-1./A33611.fastq	SRR1797107	@dbgap@:reads/SRP011999/SRS602191/SRX547642/SRR1797107/SRR1797107.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_3_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293058	@dbgap@:reads/SRP011999/SRS602191/SRX547642/SRR1293058/SRR1293058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPNFY-04A-02R.fusion.vcf	3			
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNFY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNFY-04A-02R	RNA	EFO	SRS602191	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNFY-04A-02R A33611 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33611	SRX547642	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNFY-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPNFY-04A-02R A33611 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2195-1./A33611.fastq	SRR1797107	@dbgap@:reads/SRP011999/SRS602191/SRX547642/SRR1797107/SRR1797107.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_3_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293058	@dbgap@:reads/SRP011999/SRS602191/SRX547642/SRR1293058/SRR1293058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPNFY-04A-02R.indel.vcf	3			
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNFY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNFY-04A-02R	RNA	EFO	SRS602191	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNFY-04A-02R A33611 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33611	SRX547642	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNFY-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPNFY-04A-02R A33611 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2195-1./A33611.fastq	SRR1797107	@dbgap@:reads/SRP011999/SRS602191/SRX547642/SRR1797107/SRR1797107.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_3_CTCAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293058	@dbgap@:reads/SRP011999/SRS602191/SRX547642/SRR1293058/SRR1293058.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPNFY-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNMY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNMY-04A-02R	RNA	EFO	SRS602215	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNMY-04A-02R A33612 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33612	SRX547643	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNMY-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPNMY-04A-02R A33612 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2198-1./A33612.fastq	SRR1797097	@dbgap@:reads/SRP011999/SRS602215/SRX547643/SRR1797097/SRR1797097.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_6_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293055	@dbgap@:reads/SRP011999/SRS602215/SRX547643/SRR1293055/SRR1293055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPNMY-04A-02R.exon.quantification.txt	3			
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNMY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNMY-04A-02R	RNA	EFO	SRS602215	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNMY-04A-02R A33612 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33612	SRX547643	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNMY-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPNMY-04A-02R A33612 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2198-1./A33612.fastq	SRR1797097	@dbgap@:reads/SRP011999/SRS602215/SRX547643/SRR1797097/SRR1797097.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_6_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293055	@dbgap@:reads/SRP011999/SRS602215/SRX547643/SRR1293055/SRR1293055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPNMY-04A-02R.gene.quantification.txt	3			
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNMY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNMY-04A-02R	RNA	EFO	SRS602215	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNMY-04A-02R A33612 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33612	SRX547643	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNMY-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPNMY-04A-02R A33612 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2198-1./A33612.fastq	SRR1797097	@dbgap@:reads/SRP011999/SRS602215/SRX547643/SRR1797097/SRR1797097.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_6_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293055	@dbgap@:reads/SRP011999/SRS602215/SRX547643/SRR1293055/SRR1293055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPNMY-04A-02R.isoform.quantification.txt	3			
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNMY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNMY-04A-02R	RNA	EFO	SRS602215	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNMY-04A-02R A33612 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33612	SRX547643	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNMY-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPNMY-04A-02R A33612 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2198-1./A33612.fastq	SRR1797097	@dbgap@:reads/SRP011999/SRS602215/SRX547643/SRR1797097/SRR1797097.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_6_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293055	@dbgap@:reads/SRP011999/SRS602215/SRX547643/SRR1293055/SRR1293055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPNMY-04A-02R.fusion.vcf	3			
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNMY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNMY-04A-02R	RNA	EFO	SRS602215	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNMY-04A-02R A33612 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33612	SRX547643	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNMY-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPNMY-04A-02R A33612 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2198-1./A33612.fastq	SRR1797097	@dbgap@:reads/SRP011999/SRS602215/SRX547643/SRR1797097/SRR1797097.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_6_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293055	@dbgap@:reads/SRP011999/SRS602215/SRX547643/SRR1293055/SRR1293055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPNMY-04A-02R.indel.vcf	3			
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNMY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNMY-04A-02R	RNA	EFO	SRS602215	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNMY-04A-02R A33612 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33612	SRX547643	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNMY-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PAPNMY-04A-02R A33612 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2198-1./A33612.fastq	SRR1797097	@dbgap@:reads/SRP011999/SRS602215/SRX547643/SRR1797097/SRR1797097.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_6_GCACTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293055	@dbgap@:reads/SRP011999/SRS602215/SRX547643/SRR1293055/SRR1293055.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPNMY-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNMY-09A-01R	RNA	EFO	SRS602146	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNMY-09A-01R A32777 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32777	SRX547627	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNMY-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPNMY-09A-01R A32777 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2264-1./A32777.fastq	SRR1797124	@dbgap@:reads/SRP011999/SRS602146/SRX547627/SRR1797124/SRR1797124.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_6_GACGGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292987	@dbgap@:reads/SRP011999/SRS602146/SRX547627/SRR1292987/SRR1292987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPNMY-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNMY-09A-01R	RNA	EFO	SRS602146	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNMY-09A-01R A32777 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32777	SRX547627	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNMY-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPNMY-09A-01R A32777 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2264-1./A32777.fastq	SRR1797124	@dbgap@:reads/SRP011999/SRS602146/SRX547627/SRR1797124/SRR1797124.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_6_GACGGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292987	@dbgap@:reads/SRP011999/SRS602146/SRX547627/SRR1292987/SRR1292987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPNMY-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNMY-09A-01R	RNA	EFO	SRS602146	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNMY-09A-01R A32777 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32777	SRX547627	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNMY-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPNMY-09A-01R A32777 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2264-1./A32777.fastq	SRR1797124	@dbgap@:reads/SRP011999/SRS602146/SRX547627/SRR1797124/SRR1797124.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_6_GACGGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292987	@dbgap@:reads/SRP011999/SRS602146/SRX547627/SRR1292987/SRR1292987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPNMY-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNMY-09A-01R	RNA	EFO	SRS602146	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNMY-09A-01R A32777 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32777	SRX547627	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNMY-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPNMY-09A-01R A32777 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2264-1./A32777.fastq	SRR1797124	@dbgap@:reads/SRP011999/SRS602146/SRX547627/SRR1797124/SRR1797124.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_6_GACGGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292987	@dbgap@:reads/SRP011999/SRS602146/SRX547627/SRR1292987/SRR1292987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPNMY-09A-01R.fusion.vcf	3			
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNMY-09A-01R	RNA	EFO	SRS602146	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNMY-09A-01R A32777 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32777	SRX547627	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNMY-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPNMY-09A-01R A32777 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2264-1./A32777.fastq	SRR1797124	@dbgap@:reads/SRP011999/SRS602146/SRX547627/SRR1797124/SRR1797124.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_6_GACGGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292987	@dbgap@:reads/SRP011999/SRS602146/SRX547627/SRR1292987/SRR1292987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPNMY-09A-01R.indel.vcf	3			
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNMY-09A-01R	RNA	EFO	SRS602146	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNMY-09A-01R A32777 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32777	SRX547627	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNMY-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPNMY-09A-01R A32777 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2264-1./A32777.fastq	SRR1797124	@dbgap@:reads/SRP011999/SRS602146/SRX547627/SRR1797124/SRR1797124.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_6_GACGGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292987	@dbgap@:reads/SRP011999/SRS602146/SRX547627/SRR1292987/SRR1292987.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPNMY-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-04A-01R	RNA	EFO	SRS602082	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-04A-01R A32644 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32644	SRX543400	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNNX-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPNNX-04A-01R A32644 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2246-1./A32644.fastq	SRR1797116	@dbgap@:reads/SRP011999/SRS602082/SRX543400/SRR1797116/SRR1797116.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_5_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288020	@dbgap@:reads/SRP011999/SRS602082/SRX543400/SRR1288020/SRR1288020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPNNX-04A-01R.exon.quantification.txt	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-04A-01R	RNA	EFO	SRS602082	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-04A-01R A32644 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32644	SRX543400	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNNX-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPNNX-04A-01R A32644 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2246-1./A32644.fastq	SRR1797116	@dbgap@:reads/SRP011999/SRS602082/SRX543400/SRR1797116/SRR1797116.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_5_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288020	@dbgap@:reads/SRP011999/SRS602082/SRX543400/SRR1288020/SRR1288020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPNNX-04A-01R.gene.quantification.txt	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-04A-01R	RNA	EFO	SRS602082	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-04A-01R A32644 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32644	SRX543400	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNNX-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPNNX-04A-01R A32644 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2246-1./A32644.fastq	SRR1797116	@dbgap@:reads/SRP011999/SRS602082/SRX543400/SRR1797116/SRR1797116.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_5_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288020	@dbgap@:reads/SRP011999/SRS602082/SRX543400/SRR1288020/SRR1288020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPNNX-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-04A-01R	RNA	EFO	SRS602082	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-04A-01R A32644 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32644	SRX543400	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNNX-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPNNX-04A-01R A32644 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2246-1./A32644.fastq	SRR1797116	@dbgap@:reads/SRP011999/SRS602082/SRX543400/SRR1797116/SRR1797116.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_5_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288020	@dbgap@:reads/SRP011999/SRS602082/SRX543400/SRR1288020/SRR1288020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPNNX-04A-01R.fusion.vcf	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-04A-01R	RNA	EFO	SRS602082	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-04A-01R A32644 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32644	SRX543400	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNNX-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPNNX-04A-01R A32644 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2246-1./A32644.fastq	SRR1797116	@dbgap@:reads/SRP011999/SRS602082/SRX543400/SRR1797116/SRR1797116.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_5_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288020	@dbgap@:reads/SRP011999/SRS602082/SRX543400/SRR1288020/SRR1288020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPNNX-04A-01R.indel.vcf	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-04A-01R	RNA	EFO	SRS602082	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-04A-01R A32644 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32644	SRX543400	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNNX-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPNNX-04A-01R A32644 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2246-1./A32644.fastq	SRR1797116	@dbgap@:reads/SRP011999/SRS602082/SRX543400/SRR1797116/SRR1797116.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_5_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288020	@dbgap@:reads/SRP011999/SRS602082/SRX543400/SRR1288020/SRR1288020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPNNX-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-01R	RNA	EFO	SRS602087	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-01R A32645 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32645	SRX543432	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNNX-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPNNX-09A-01R A32645 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2229-1./A32645.fastq	SRR1797079	@dbgap@:reads/SRP011999/SRS602087/SRX543432/SRR1797079/SRR1797079.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_2_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288023	@dbgap@:reads/SRP011999/SRS602087/SRX543432/SRR1288023/SRR1288023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPNNX-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-01R	RNA	EFO	SRS602087	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-01R A32645 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32645	SRX543432	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNNX-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPNNX-09A-01R A32645 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2229-1./A32645.fastq	SRR1797079	@dbgap@:reads/SRP011999/SRS602087/SRX543432/SRR1797079/SRR1797079.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_2_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288023	@dbgap@:reads/SRP011999/SRS602087/SRX543432/SRR1288023/SRR1288023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPNNX-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-01R	RNA	EFO	SRS602087	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-01R A32645 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32645	SRX543432	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNNX-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPNNX-09A-01R A32645 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2229-1./A32645.fastq	SRR1797079	@dbgap@:reads/SRP011999/SRS602087/SRX543432/SRR1797079/SRR1797079.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_2_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288023	@dbgap@:reads/SRP011999/SRS602087/SRX543432/SRR1288023/SRR1288023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPNNX-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-01R	RNA	EFO	SRS602087	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-01R A32645 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32645	SRX543432	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNNX-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPNNX-09A-01R A32645 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2229-1./A32645.fastq	SRR1797079	@dbgap@:reads/SRP011999/SRS602087/SRX543432/SRR1797079/SRR1797079.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_2_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288023	@dbgap@:reads/SRP011999/SRS602087/SRX543432/SRR1288023/SRR1288023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPNNX-09A-01R.fusion.vcf	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-01R	RNA	EFO	SRS602087	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-01R A32645 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32645	SRX543432	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNNX-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPNNX-09A-01R A32645 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2229-1./A32645.fastq	SRR1797079	@dbgap@:reads/SRP011999/SRS602087/SRX543432/SRR1797079/SRR1797079.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_2_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288023	@dbgap@:reads/SRP011999/SRS602087/SRX543432/SRR1288023/SRR1288023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPNNX-09A-01R.indel.vcf	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-01R	RNA	EFO	SRS602087	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-01R A32645 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32645	SRX543432	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNNX-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPNNX-09A-01R A32645 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2229-1./A32645.fastq	SRR1797079	@dbgap@:reads/SRP011999/SRS602087/SRX543432/SRR1797079/SRR1797079.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_2_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288023	@dbgap@:reads/SRP011999/SRS602087/SRX543432/SRR1288023/SRR1288023.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPNNX-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-02R	RNA	EFO	SRS2416201	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-02R A61065 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61065	SRX3073866	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNNX-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPNNX-09A-02R A61065 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4506-1./A61065.fastq	SRR5912866	@dbgap@:reads/SRP011999/SRS2416201/SRX3073866/SRR5912866/SRR5912866.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPNNX-09A-02R.exon.quantification.txt	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-02R	RNA	EFO	SRS2416201	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-02R A61065 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61065	SRX3073866	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNNX-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPNNX-09A-02R A61065 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4506-1./A61065.fastq	SRR5912866	@dbgap@:reads/SRP011999/SRS2416201/SRX3073866/SRR5912866/SRR5912866.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPNNX-09A-02R.gene.quantification.txt	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-02R	RNA	EFO	SRS2416201	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-02R A61065 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61065	SRX3073866	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNNX-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPNNX-09A-02R A61065 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4506-1./A61065.fastq	SRR5912866	@dbgap@:reads/SRP011999/SRS2416201/SRX3073866/SRR5912866/SRR5912866.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPNNX-09A-02R.isoform.quantification.txt	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-02R	RNA	EFO	SRS2416201	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-02R A61065 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61065	SRX3073866	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNNX-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPNNX-09A-02R A61065 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4506-1./A61065.fastq	SRR5912866	@dbgap@:reads/SRP011999/SRS2416201/SRX3073866/SRR5912866/SRR5912866.sra	1								bcgsc.ca:Protocol:mRNAseq-Fusion-DeFuse:01		TARGET-10-PAPNNX-09A-02R.results.filtered.tsv	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-02R	RNA	EFO	SRS2416201	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-02R A61065 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61065	SRX3073866	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNNX-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPNNX-09A-02R A61065 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4506-1./A61065.fastq	SRR5912866	@dbgap@:reads/SRP011999/SRS2416201/SRX3073866/SRR5912866/SRR5912866.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPNNX-09A-02R.fusion.vcf	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-02R	RNA	EFO	SRS2416201	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-02R A61065 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61065	SRX3073866	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNNX-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPNNX-09A-02R A61065 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4506-1./A61065.fastq	SRR5912866	@dbgap@:reads/SRP011999/SRS2416201/SRX3073866/SRR5912866/SRR5912866.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPNNX-09A-02R.indel.vcf	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-02R	RNA	EFO	SRS2416201	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPNNX-09A-02R A61065 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61065	SRX3073866	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPNNX-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPNNX-09A-02R A61065 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4506-1./A61065.fastq	SRR5912866	@dbgap@:reads/SRP011999/SRS2416201/SRX3073866/SRR5912866/SRR5912866.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-10-PAPNNX-09A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Tab:01	TARGET-10-PAPNNX-09A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPPGN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPPGN-04A-02R	RNA	EFO	SRS602195	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPPGN-04A-02R A33617 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33617	SRX547660	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPPGN-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPPGN-04A-02R A33617 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2181-1./A33617.fastq	SRR1791040	@dbgap@:reads/SRP011999/SRS602195/SRX547660/SRR1791040/SRR1791040.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_5_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293022	@dbgap@:reads/SRP011999/SRS602195/SRX547660/SRR1293022/SRR1293022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPPGN-04A-02R.exon.quantification.txt	3			
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPPGN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPPGN-04A-02R	RNA	EFO	SRS602195	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPPGN-04A-02R A33617 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33617	SRX547660	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPPGN-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPPGN-04A-02R A33617 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2181-1./A33617.fastq	SRR1791040	@dbgap@:reads/SRP011999/SRS602195/SRX547660/SRR1791040/SRR1791040.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_5_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293022	@dbgap@:reads/SRP011999/SRS602195/SRX547660/SRR1293022/SRR1293022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPPGN-04A-02R.gene.quantification.txt	3			
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPPGN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPPGN-04A-02R	RNA	EFO	SRS602195	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPPGN-04A-02R A33617 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33617	SRX547660	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPPGN-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPPGN-04A-02R A33617 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2181-1./A33617.fastq	SRR1791040	@dbgap@:reads/SRP011999/SRS602195/SRX547660/SRR1791040/SRR1791040.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_5_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293022	@dbgap@:reads/SRP011999/SRS602195/SRX547660/SRR1293022/SRR1293022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPPGN-04A-02R.isoform.quantification.txt	3			
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPPGN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPPGN-04A-02R	RNA	EFO	SRS602195	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPPGN-04A-02R A33617 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33617	SRX547660	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPPGN-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPPGN-04A-02R A33617 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2181-1./A33617.fastq	SRR1791040	@dbgap@:reads/SRP011999/SRS602195/SRX547660/SRR1791040/SRR1791040.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_5_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293022	@dbgap@:reads/SRP011999/SRS602195/SRX547660/SRR1293022/SRR1293022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPPGN-04A-02R.fusion.vcf	3			
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPPGN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPPGN-04A-02R	RNA	EFO	SRS602195	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPPGN-04A-02R A33617 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33617	SRX547660	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPPGN-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPPGN-04A-02R A33617 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2181-1./A33617.fastq	SRR1791040	@dbgap@:reads/SRP011999/SRS602195/SRX547660/SRR1791040/SRR1791040.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_5_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293022	@dbgap@:reads/SRP011999/SRS602195/SRX547660/SRR1293022/SRR1293022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPPGN-04A-02R.indel.vcf	3			
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPPGN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPPGN-04A-02R	RNA	EFO	SRS602195	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPPGN-04A-02R A33617 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33617	SRX547660	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPPGN-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPPGN-04A-02R A33617 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2181-1./A33617.fastq	SRR1791040	@dbgap@:reads/SRP011999/SRS602195/SRX547660/SRR1791040/SRR1791040.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_5_CTTGTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293022	@dbgap@:reads/SRP011999/SRS602195/SRX547660/SRR1293022/SRR1293022.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPPGN-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPRCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRCS-04A-01R	RNA	EFO	SRS602056	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRCS-04A-01R A32676 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32676	SRX543409	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPRCS-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPRCS-04A-01R A32676 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2248-1./A32676.fastq	SRR1797068	@dbgap@:reads/SRP011999/SRS602056/SRX543409/SRR1797068/SRR1797068.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_7_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288031	@dbgap@:reads/SRP011999/SRS602056/SRX543409/SRR1288031/SRR1288031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPRCS-04A-01R.exon.quantification.txt	3			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPRCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRCS-04A-01R	RNA	EFO	SRS602056	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRCS-04A-01R A32676 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32676	SRX543409	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPRCS-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPRCS-04A-01R A32676 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2248-1./A32676.fastq	SRR1797068	@dbgap@:reads/SRP011999/SRS602056/SRX543409/SRR1797068/SRR1797068.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_7_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288031	@dbgap@:reads/SRP011999/SRS602056/SRX543409/SRR1288031/SRR1288031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPRCS-04A-01R.gene.quantification.txt	3			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPRCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRCS-04A-01R	RNA	EFO	SRS602056	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRCS-04A-01R A32676 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32676	SRX543409	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPRCS-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPRCS-04A-01R A32676 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2248-1./A32676.fastq	SRR1797068	@dbgap@:reads/SRP011999/SRS602056/SRX543409/SRR1797068/SRR1797068.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_7_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288031	@dbgap@:reads/SRP011999/SRS602056/SRX543409/SRR1288031/SRR1288031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPRCS-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPRCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRCS-04A-01R	RNA	EFO	SRS602056	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRCS-04A-01R A32676 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32676	SRX543409	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPRCS-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPRCS-04A-01R A32676 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2248-1./A32676.fastq	SRR1797068	@dbgap@:reads/SRP011999/SRS602056/SRX543409/SRR1797068/SRR1797068.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_7_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288031	@dbgap@:reads/SRP011999/SRS602056/SRX543409/SRR1288031/SRR1288031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPRCS-04A-01R.fusion.vcf	3			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPRCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRCS-04A-01R	RNA	EFO	SRS602056	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRCS-04A-01R A32676 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32676	SRX543409	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPRCS-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPRCS-04A-01R A32676 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2248-1./A32676.fastq	SRR1797068	@dbgap@:reads/SRP011999/SRS602056/SRX543409/SRR1797068/SRR1797068.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_7_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288031	@dbgap@:reads/SRP011999/SRS602056/SRX543409/SRR1288031/SRR1288031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPRCS-04A-01R.indel.vcf	3			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPRCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRCS-04A-01R	RNA	EFO	SRS602056	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRCS-04A-01R A32676 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32676	SRX543409	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPRCS-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPRCS-04A-01R A32676 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2248-1./A32676.fastq	SRR1797068	@dbgap@:reads/SRP011999/SRS602056/SRX543409/SRR1797068/SRR1797068.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_7_CAGATC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288031	@dbgap@:reads/SRP011999/SRS602056/SRX543409/SRR1288031/SRR1288031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPRCS-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRCS-09A-01R	RNA	EFO	SRS602100	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRCS-09A-01R A32677 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32677	SRX543399	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPRCS-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPRCS-09A-01R A32677 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2237-1./A32677.fastq	SRR1791075	@dbgap@:reads/SRP011999/SRS602100/SRX543399/SRR1791075/SRR1791075.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_4_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288038	@dbgap@:reads/SRP011999/SRS602100/SRX543399/SRR1288038/SRR1288038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPRCS-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRCS-09A-01R	RNA	EFO	SRS602100	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRCS-09A-01R A32677 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32677	SRX543399	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPRCS-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPRCS-09A-01R A32677 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2237-1./A32677.fastq	SRR1791075	@dbgap@:reads/SRP011999/SRS602100/SRX543399/SRR1791075/SRR1791075.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_4_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288038	@dbgap@:reads/SRP011999/SRS602100/SRX543399/SRR1288038/SRR1288038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPRCS-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRCS-09A-01R	RNA	EFO	SRS602100	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRCS-09A-01R A32677 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32677	SRX543399	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPRCS-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPRCS-09A-01R A32677 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2237-1./A32677.fastq	SRR1791075	@dbgap@:reads/SRP011999/SRS602100/SRX543399/SRR1791075/SRR1791075.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_4_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288038	@dbgap@:reads/SRP011999/SRS602100/SRX543399/SRR1288038/SRR1288038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPRCS-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRCS-09A-01R	RNA	EFO	SRS602100	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRCS-09A-01R A32677 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32677	SRX543399	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPRCS-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPRCS-09A-01R A32677 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2237-1./A32677.fastq	SRR1791075	@dbgap@:reads/SRP011999/SRS602100/SRX543399/SRR1791075/SRR1791075.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_4_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288038	@dbgap@:reads/SRP011999/SRS602100/SRX543399/SRR1288038/SRR1288038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPRCS-09A-01R.fusion.vcf	3			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRCS-09A-01R	RNA	EFO	SRS602100	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRCS-09A-01R A32677 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32677	SRX543399	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPRCS-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPRCS-09A-01R A32677 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2237-1./A32677.fastq	SRR1791075	@dbgap@:reads/SRP011999/SRS602100/SRX543399/SRR1791075/SRR1791075.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_4_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288038	@dbgap@:reads/SRP011999/SRS602100/SRX543399/SRR1288038/SRR1288038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPRCS-09A-01R.indel.vcf	3			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRCS-09A-01R	RNA	EFO	SRS602100	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRCS-09A-01R A32677 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32677	SRX543399	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPRCS-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPRCS-09A-01R A32677 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2237-1./A32677.fastq	SRR1791075	@dbgap@:reads/SRP011999/SRS602100/SRX543399/SRR1791075/SRR1791075.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_4_AAATGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288038	@dbgap@:reads/SRP011999/SRS602100/SRX543399/SRR1288038/SRR1288038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPRCS-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPRFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRFE-09A-01R	RNA	EFO	SRS602184	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRFE-09A-01R A32754 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32754	SRX547619	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPRFE-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPRFE-09A-01R A32754 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2286-1./A32754.fastq	SRR1791093	@dbgap@:reads/SRP011999/SRS602184/SRX547619/SRR1791093/SRR1791093.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_5_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292982	@dbgap@:reads/SRP011999/SRS602184/SRX547619/SRR1292982/SRR1292982.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPRFE-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPRFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRFE-09A-01R	RNA	EFO	SRS602184	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRFE-09A-01R A32754 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32754	SRX547619	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPRFE-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPRFE-09A-01R A32754 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2286-1./A32754.fastq	SRR1791093	@dbgap@:reads/SRP011999/SRS602184/SRX547619/SRR1791093/SRR1791093.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_5_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292982	@dbgap@:reads/SRP011999/SRS602184/SRX547619/SRR1292982/SRR1292982.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPRFE-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPRFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRFE-09A-01R	RNA	EFO	SRS602184	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRFE-09A-01R A32754 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32754	SRX547619	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPRFE-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPRFE-09A-01R A32754 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2286-1./A32754.fastq	SRR1791093	@dbgap@:reads/SRP011999/SRS602184/SRX547619/SRR1791093/SRR1791093.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_5_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292982	@dbgap@:reads/SRP011999/SRS602184/SRX547619/SRR1292982/SRR1292982.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPRFE-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPRFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRFE-09A-01R	RNA	EFO	SRS602184	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRFE-09A-01R A32754 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32754	SRX547619	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPRFE-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPRFE-09A-01R A32754 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2286-1./A32754.fastq	SRR1791093	@dbgap@:reads/SRP011999/SRS602184/SRX547619/SRR1791093/SRR1791093.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_5_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292982	@dbgap@:reads/SRP011999/SRS602184/SRX547619/SRR1292982/SRR1292982.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPRFE-09A-01R.fusion.vcf	3			
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPRFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRFE-09A-01R	RNA	EFO	SRS602184	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRFE-09A-01R A32754 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32754	SRX547619	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPRFE-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPRFE-09A-01R A32754 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2286-1./A32754.fastq	SRR1791093	@dbgap@:reads/SRP011999/SRS602184/SRX547619/SRR1791093/SRR1791093.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_5_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292982	@dbgap@:reads/SRP011999/SRS602184/SRX547619/SRR1292982/SRR1292982.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPRFE-09A-01R.indel.vcf	3			
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPRFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRFE-09A-01R	RNA	EFO	SRS602184	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRFE-09A-01R A32754 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32754	SRX547619	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPRFE-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPRFE-09A-01R A32754 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2286-1./A32754.fastq	SRR1791093	@dbgap@:reads/SRP011999/SRS602184/SRX547619/SRR1791093/SRR1791093.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_5_ATCCTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292982	@dbgap@:reads/SRP011999/SRS602184/SRX547619/SRR1292982/SRR1292982.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPRFE-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-01R	RNA	EFO	SRS602047	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-01R A32678 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32678	SRX543461	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPSPG-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPSPG-04A-01R A32678 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2244-1./A32678.fastq	SRR1797122	@dbgap@:reads/SRP011999/SRS602047/SRX543461/SRR1797122/SRR1797122.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_3_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288013	@dbgap@:reads/SRP011999/SRS602047/SRX543461/SRR1288013/SRR1288013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPSPG-04A-01R.exon.quantification.txt	3			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-01R	RNA	EFO	SRS602047	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-01R A32678 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32678	SRX543461	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPSPG-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPSPG-04A-01R A32678 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2244-1./A32678.fastq	SRR1797122	@dbgap@:reads/SRP011999/SRS602047/SRX543461/SRR1797122/SRR1797122.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_3_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288013	@dbgap@:reads/SRP011999/SRS602047/SRX543461/SRR1288013/SRR1288013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPSPG-04A-01R.gene.quantification.txt	3			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-01R	RNA	EFO	SRS602047	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-01R A32678 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32678	SRX543461	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPSPG-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPSPG-04A-01R A32678 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2244-1./A32678.fastq	SRR1797122	@dbgap@:reads/SRP011999/SRS602047/SRX543461/SRR1797122/SRR1797122.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_3_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288013	@dbgap@:reads/SRP011999/SRS602047/SRX543461/SRR1288013/SRR1288013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPSPG-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-01R	RNA	EFO	SRS602047	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-01R A32678 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32678	SRX543461	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPSPG-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPSPG-04A-01R A32678 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2244-1./A32678.fastq	SRR1797122	@dbgap@:reads/SRP011999/SRS602047/SRX543461/SRR1797122/SRR1797122.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_3_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288013	@dbgap@:reads/SRP011999/SRS602047/SRX543461/SRR1288013/SRR1288013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPSPG-04A-01R.fusion.vcf	3			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-01R	RNA	EFO	SRS602047	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-01R A32678 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32678	SRX543461	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPSPG-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPSPG-04A-01R A32678 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2244-1./A32678.fastq	SRR1797122	@dbgap@:reads/SRP011999/SRS602047/SRX543461/SRR1797122/SRR1797122.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_3_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288013	@dbgap@:reads/SRP011999/SRS602047/SRX543461/SRR1288013/SRR1288013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPSPG-04A-01R.indel.vcf	3			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-01R	RNA	EFO	SRS602047	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-01R A32678 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32678	SRX543461	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPSPG-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPSPG-04A-01R A32678 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2244-1./A32678.fastq	SRR1797122	@dbgap@:reads/SRP011999/SRS602047/SRX543461/SRR1797122/SRR1797122.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_3_ACAAAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288013	@dbgap@:reads/SRP011999/SRS602047/SRX543461/SRR1288013/SRR1288013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPSPG-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-02R	RNA	EFO	SRS2416205	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-02R A61066 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61066	SRX3073863	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPSPG-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPSPG-04A-02R A61066 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4508-1./A61066.fastq	SRR5912871	@dbgap@:reads/SRP011999/SRS2416205/SRX3073863/SRR5912871/SRR5912871.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPSPG-04A-02R.exon.quantification.txt	3			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-02R	RNA	EFO	SRS2416205	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-02R A61066 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61066	SRX3073863	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPSPG-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPSPG-04A-02R A61066 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4508-1./A61066.fastq	SRR5912871	@dbgap@:reads/SRP011999/SRS2416205/SRX3073863/SRR5912871/SRR5912871.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPSPG-04A-02R.gene.quantification.txt	3			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-02R	RNA	EFO	SRS2416205	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-02R A61066 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61066	SRX3073863	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPSPG-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPSPG-04A-02R A61066 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4508-1./A61066.fastq	SRR5912871	@dbgap@:reads/SRP011999/SRS2416205/SRX3073863/SRR5912871/SRR5912871.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPSPG-04A-02R.isoform.quantification.txt	3			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-02R	RNA	EFO	SRS2416205	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-02R A61066 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61066	SRX3073863	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPSPG-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPSPG-04A-02R A61066 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4508-1./A61066.fastq	SRR5912871	@dbgap@:reads/SRP011999/SRS2416205/SRX3073863/SRR5912871/SRR5912871.sra	1								bcgsc.ca:Protocol:mRNAseq-Fusion-DeFuse:01		TARGET-10-PAPSPG-04A-02R.results.filtered.tsv	3			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-02R	RNA	EFO	SRS2416205	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-02R A61066 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61066	SRX3073863	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPSPG-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPSPG-04A-02R A61066 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4508-1./A61066.fastq	SRR5912871	@dbgap@:reads/SRP011999/SRS2416205/SRX3073863/SRR5912871/SRR5912871.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPSPG-04A-02R.fusion.vcf	3			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-02R	RNA	EFO	SRS2416205	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-02R A61066 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61066	SRX3073863	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPSPG-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPSPG-04A-02R A61066 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4508-1./A61066.fastq	SRR5912871	@dbgap@:reads/SRP011999/SRS2416205/SRX3073863/SRR5912871/SRR5912871.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPSPG-04A-02R.indel.vcf	3			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-02R	RNA	EFO	SRS2416205	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPG-04A-02R A61066 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61066	SRX3073863	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPSPG-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPSPG-04A-02R A61066 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4508-1./A61066.fastq	SRR5912871	@dbgap@:reads/SRP011999/SRS2416205/SRX3073863/SRR5912871/SRR5912871.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-10-PAPSPG-04A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Tab:01	TARGET-10-PAPSPG-04A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPN-04A-01R	RNA	EFO	SRS602054	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPN-04A-01R A32646 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32646	SRX543431	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPSPN-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPSPN-04A-01R A32646 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2230-1./A32646.fastq	SRR1797102	@dbgap@:reads/SRP011999/SRS602054/SRX543431/SRR1797102/SRR1797102.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_3_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288034	@dbgap@:reads/SRP011999/SRS602054/SRX543431/SRR1288034/SRR1288034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPSPN-04A-01R.exon.quantification.txt	3			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPN-04A-01R	RNA	EFO	SRS602054	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPN-04A-01R A32646 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32646	SRX543431	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPSPN-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPSPN-04A-01R A32646 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2230-1./A32646.fastq	SRR1797102	@dbgap@:reads/SRP011999/SRS602054/SRX543431/SRR1797102/SRR1797102.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_3_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288034	@dbgap@:reads/SRP011999/SRS602054/SRX543431/SRR1288034/SRR1288034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPSPN-04A-01R.gene.quantification.txt	3			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPN-04A-01R	RNA	EFO	SRS602054	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPN-04A-01R A32646 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32646	SRX543431	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPSPN-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPSPN-04A-01R A32646 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2230-1./A32646.fastq	SRR1797102	@dbgap@:reads/SRP011999/SRS602054/SRX543431/SRR1797102/SRR1797102.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_3_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288034	@dbgap@:reads/SRP011999/SRS602054/SRX543431/SRR1288034/SRR1288034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPSPN-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPN-04A-01R	RNA	EFO	SRS602054	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPN-04A-01R A32646 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32646	SRX543431	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPSPN-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPSPN-04A-01R A32646 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2230-1./A32646.fastq	SRR1797102	@dbgap@:reads/SRP011999/SRS602054/SRX543431/SRR1797102/SRR1797102.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_3_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288034	@dbgap@:reads/SRP011999/SRS602054/SRX543431/SRR1288034/SRR1288034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPSPN-04A-01R.fusion.vcf	3			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPN-04A-01R	RNA	EFO	SRS602054	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPN-04A-01R A32646 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32646	SRX543431	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPSPN-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPSPN-04A-01R A32646 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2230-1./A32646.fastq	SRR1797102	@dbgap@:reads/SRP011999/SRS602054/SRX543431/SRR1797102/SRR1797102.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_3_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288034	@dbgap@:reads/SRP011999/SRS602054/SRX543431/SRR1288034/SRR1288034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPSPN-04A-01R.indel.vcf	3			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPN-04A-01R	RNA	EFO	SRS602054	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPN-04A-01R A32646 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32646	SRX543431	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPSPN-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPSPN-04A-01R A32646 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2230-1./A32646.fastq	SRR1797102	@dbgap@:reads/SRP011999/SRS602054/SRX543431/SRR1797102/SRR1797102.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_3_ACTCTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288034	@dbgap@:reads/SRP011999/SRS602054/SRX543431/SRR1288034/SRR1288034.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPSPN-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPN-09A-01R	RNA	EFO	SRS602091	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPN-09A-01R A32647 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32647	SRX543436	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPSPN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPSPN-09A-01R A32647 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2251-1./A32647.fastq	SRR1790985	@dbgap@:reads/SRP011999/SRS602091/SRX543436/SRR1790985/SRR1790985.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_2_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288083	@dbgap@:reads/SRP011999/SRS602091/SRX543436/SRR1288083/SRR1288083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPSPN-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPN-09A-01R	RNA	EFO	SRS602091	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPN-09A-01R A32647 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32647	SRX543436	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPSPN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPSPN-09A-01R A32647 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2251-1./A32647.fastq	SRR1790985	@dbgap@:reads/SRP011999/SRS602091/SRX543436/SRR1790985/SRR1790985.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_2_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288083	@dbgap@:reads/SRP011999/SRS602091/SRX543436/SRR1288083/SRR1288083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPSPN-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPN-09A-01R	RNA	EFO	SRS602091	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPN-09A-01R A32647 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32647	SRX543436	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPSPN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPSPN-09A-01R A32647 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2251-1./A32647.fastq	SRR1790985	@dbgap@:reads/SRP011999/SRS602091/SRX543436/SRR1790985/SRR1790985.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_2_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288083	@dbgap@:reads/SRP011999/SRS602091/SRX543436/SRR1288083/SRR1288083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPSPN-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPN-09A-01R	RNA	EFO	SRS602091	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPN-09A-01R A32647 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32647	SRX543436	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPSPN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPSPN-09A-01R A32647 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2251-1./A32647.fastq	SRR1790985	@dbgap@:reads/SRP011999/SRS602091/SRX543436/SRR1790985/SRR1790985.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_2_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288083	@dbgap@:reads/SRP011999/SRS602091/SRX543436/SRR1288083/SRR1288083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPSPN-09A-01R.fusion.vcf	3			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPN-09A-01R	RNA	EFO	SRS602091	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPN-09A-01R A32647 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32647	SRX543436	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPSPN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPSPN-09A-01R A32647 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2251-1./A32647.fastq	SRR1790985	@dbgap@:reads/SRP011999/SRS602091/SRX543436/SRR1790985/SRR1790985.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_2_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288083	@dbgap@:reads/SRP011999/SRS602091/SRX543436/SRR1288083/SRR1288083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPSPN-09A-01R.indel.vcf	3			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPN-09A-01R	RNA	EFO	SRS602091	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPSPN-09A-01R A32647 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32647	SRX543436	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPSPN-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPSPN-09A-01R A32647 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2251-1./A32647.fastq	SRR1790985	@dbgap@:reads/SRP011999/SRS602091/SRX543436/SRR1790985/SRR1790985.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_2_ATACGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288083	@dbgap@:reads/SRP011999/SRS602091/SRX543436/SRR1288083/SRR1288083.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPSPN-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPTLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTLM-09A-01R	RNA	EFO	SRS602143	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTLM-09A-01R A32747 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32747	SRX547631	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPTLM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPTLM-09A-01R A32747 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2269-1./A32747.fastq	SRR1791056	@dbgap@:reads/SRP011999/SRS602143/SRX547631/SRR1791056/SRR1791056.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_4_TCATTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292958	@dbgap@:reads/SRP011999/SRS602143/SRX547631/SRR1292958/SRR1292958.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPTLM-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPTLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTLM-09A-01R	RNA	EFO	SRS602143	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTLM-09A-01R A32747 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32747	SRX547631	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPTLM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPTLM-09A-01R A32747 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2269-1./A32747.fastq	SRR1791056	@dbgap@:reads/SRP011999/SRS602143/SRX547631/SRR1791056/SRR1791056.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_4_TCATTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292958	@dbgap@:reads/SRP011999/SRS602143/SRX547631/SRR1292958/SRR1292958.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPTLM-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPTLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTLM-09A-01R	RNA	EFO	SRS602143	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTLM-09A-01R A32747 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32747	SRX547631	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPTLM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPTLM-09A-01R A32747 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2269-1./A32747.fastq	SRR1791056	@dbgap@:reads/SRP011999/SRS602143/SRX547631/SRR1791056/SRR1791056.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_4_TCATTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292958	@dbgap@:reads/SRP011999/SRS602143/SRX547631/SRR1292958/SRR1292958.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPTLM-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPTLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTLM-09A-01R	RNA	EFO	SRS602143	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTLM-09A-01R A32747 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32747	SRX547631	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPTLM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPTLM-09A-01R A32747 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2269-1./A32747.fastq	SRR1791056	@dbgap@:reads/SRP011999/SRS602143/SRX547631/SRR1791056/SRR1791056.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_4_TCATTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292958	@dbgap@:reads/SRP011999/SRS602143/SRX547631/SRR1292958/SRR1292958.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPTLM-09A-01R.fusion.vcf	3			
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPTLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTLM-09A-01R	RNA	EFO	SRS602143	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTLM-09A-01R A32747 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32747	SRX547631	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPTLM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPTLM-09A-01R A32747 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2269-1./A32747.fastq	SRR1791056	@dbgap@:reads/SRP011999/SRS602143/SRX547631/SRR1791056/SRR1791056.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_4_TCATTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292958	@dbgap@:reads/SRP011999/SRS602143/SRX547631/SRR1292958/SRR1292958.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPTLM-09A-01R.indel.vcf	3			
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPTLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTLM-09A-01R	RNA	EFO	SRS602143	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTLM-09A-01R A32747 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32747	SRX547631	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPTLM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PAPTLM-09A-01R A32747 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2269-1./A32747.fastq	SRR1791056	@dbgap@:reads/SRP011999/SRS602143/SRX547631/SRR1791056/SRR1791056.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_4_TCATTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292958	@dbgap@:reads/SRP011999/SRS602143/SRX547631/SRR1292958/SRR1292958.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPTLM-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPVTA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-04A-01R	RNA	EFO	SRS602066	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-04A-01R A32613 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32613	SRX543444	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPVTA-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPVTA-04A-01R A32613 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2235-1./A32613.fastq	SRR1797071	@dbgap@:reads/SRP011999/SRS602066/SRX543444/SRR1797071/SRR1797071.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_2_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288029	@dbgap@:reads/SRP011999/SRS602066/SRX543444/SRR1288029/SRR1288029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPVTA-04A-01R.exon.quantification.txt	3			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPVTA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-04A-01R	RNA	EFO	SRS602066	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-04A-01R A32613 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32613	SRX543444	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPVTA-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPVTA-04A-01R A32613 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2235-1./A32613.fastq	SRR1797071	@dbgap@:reads/SRP011999/SRS602066/SRX543444/SRR1797071/SRR1797071.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_2_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288029	@dbgap@:reads/SRP011999/SRS602066/SRX543444/SRR1288029/SRR1288029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPVTA-04A-01R.gene.quantification.txt	3			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPVTA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-04A-01R	RNA	EFO	SRS602066	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-04A-01R A32613 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32613	SRX543444	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPVTA-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPVTA-04A-01R A32613 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2235-1./A32613.fastq	SRR1797071	@dbgap@:reads/SRP011999/SRS602066/SRX543444/SRR1797071/SRR1797071.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_2_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288029	@dbgap@:reads/SRP011999/SRS602066/SRX543444/SRR1288029/SRR1288029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPVTA-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPVTA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-04A-01R	RNA	EFO	SRS602066	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-04A-01R A32613 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32613	SRX543444	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPVTA-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPVTA-04A-01R A32613 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2235-1./A32613.fastq	SRR1797071	@dbgap@:reads/SRP011999/SRS602066/SRX543444/SRR1797071/SRR1797071.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_2_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288029	@dbgap@:reads/SRP011999/SRS602066/SRX543444/SRR1288029/SRR1288029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPVTA-04A-01R.fusion.vcf	3			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPVTA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-04A-01R	RNA	EFO	SRS602066	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-04A-01R A32613 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32613	SRX543444	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPVTA-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPVTA-04A-01R A32613 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2235-1./A32613.fastq	SRR1797071	@dbgap@:reads/SRP011999/SRS602066/SRX543444/SRR1797071/SRR1797071.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_2_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288029	@dbgap@:reads/SRP011999/SRS602066/SRX543444/SRR1288029/SRR1288029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPVTA-04A-01R.indel.vcf	3			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPVTA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-04A-01R	RNA	EFO	SRS602066	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-04A-01R A32613 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32613	SRX543444	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPVTA-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PAPVTA-04A-01R A32613 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2235-1./A32613.fastq	SRR1797071	@dbgap@:reads/SRP011999/SRS602066/SRX543444/SRR1797071/SRR1797071.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_2_CAAAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288029	@dbgap@:reads/SRP011999/SRS602066/SRX543444/SRR1288029/SRR1288029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPVTA-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-01R	RNA	EFO	SRS602057	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-01R A32612 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32612	SRX543428	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPVTA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPVTA-09A-01R A32612 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2219-1./A32612.fastq	SRR1791019	@dbgap@:reads/SRP011999/SRS602057/SRX543428/SRR1791019/SRR1791019.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 1)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_7_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288078	@dbgap@:reads/SRP011999/SRS602057/SRX543428/SRR1288078/SRR1288078.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPVTA-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-01R	RNA	EFO	SRS602057	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-01R A32612 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32612	SRX543428	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPVTA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPVTA-09A-01R A32612 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2219-1./A32612.fastq	SRR1791019	@dbgap@:reads/SRP011999/SRS602057/SRX543428/SRR1791019/SRR1791019.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 1)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_7_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288078	@dbgap@:reads/SRP011999/SRS602057/SRX543428/SRR1288078/SRR1288078.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPVTA-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-01R	RNA	EFO	SRS602057	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-01R A32612 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32612	SRX543428	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPVTA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPVTA-09A-01R A32612 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2219-1./A32612.fastq	SRR1791019	@dbgap@:reads/SRP011999/SRS602057/SRX543428/SRR1791019/SRR1791019.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 1)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_7_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288078	@dbgap@:reads/SRP011999/SRS602057/SRX543428/SRR1288078/SRR1288078.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPVTA-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-01R	RNA	EFO	SRS602057	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-01R A32612 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32612	SRX543428	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPVTA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPVTA-09A-01R A32612 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2219-1./A32612.fastq	SRR1791019	@dbgap@:reads/SRP011999/SRS602057/SRX543428/SRR1791019/SRR1791019.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 1)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_7_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288078	@dbgap@:reads/SRP011999/SRS602057/SRX543428/SRR1288078/SRR1288078.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPVTA-09A-01R.fusion.vcf	3			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-01R	RNA	EFO	SRS602057	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-01R A32612 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32612	SRX543428	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPVTA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPVTA-09A-01R A32612 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2219-1./A32612.fastq	SRR1791019	@dbgap@:reads/SRP011999/SRS602057/SRX543428/SRR1791019/SRR1791019.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 1)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_7_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288078	@dbgap@:reads/SRP011999/SRS602057/SRX543428/SRR1288078/SRR1288078.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPVTA-09A-01R.indel.vcf	3			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-01R	RNA	EFO	SRS602057	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-01R A32612 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32612	SRX543428	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPVTA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PAPVTA-09A-01R A32612 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2219-1./A32612.fastq	SRR1791019	@dbgap@:reads/SRP011999/SRS602057/SRX543428/SRR1791019/SRR1791019.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 1)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_7_AGCGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288078	@dbgap@:reads/SRP011999/SRS602057/SRX543428/SRR1288078/SRR1288078.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPVTA-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-02R	RNA	EFO	SRS2416209	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-02R A61067 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61067	SRX3073859	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPVTA-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPVTA-09A-02R A61067 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4519-1./A61067.fastq	SRR5912869	@dbgap@:reads/SRP011999/SRS2416209/SRX3073859/SRR5912869/SRR5912869.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPVTA-09A-02R.exon.quantification.txt	3			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-02R	RNA	EFO	SRS2416209	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-02R A61067 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61067	SRX3073859	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPVTA-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPVTA-09A-02R A61067 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4519-1./A61067.fastq	SRR5912869	@dbgap@:reads/SRP011999/SRS2416209/SRX3073859/SRR5912869/SRR5912869.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPVTA-09A-02R.gene.quantification.txt	3			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-02R	RNA	EFO	SRS2416209	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-02R A61067 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61067	SRX3073859	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPVTA-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPVTA-09A-02R A61067 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4519-1./A61067.fastq	SRR5912869	@dbgap@:reads/SRP011999/SRS2416209/SRX3073859/SRR5912869/SRR5912869.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPVTA-09A-02R.isoform.quantification.txt	3			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-02R	RNA	EFO	SRS2416209	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-02R A61067 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61067	SRX3073859	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPVTA-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPVTA-09A-02R A61067 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4519-1./A61067.fastq	SRR5912869	@dbgap@:reads/SRP011999/SRS2416209/SRX3073859/SRR5912869/SRR5912869.sra	1								bcgsc.ca:Protocol:mRNAseq-Fusion-DeFuse:01		TARGET-10-PAPVTA-09A-02R.results.filtered.tsv	3			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-02R	RNA	EFO	SRS2416209	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-02R A61067 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61067	SRX3073859	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPVTA-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPVTA-09A-02R A61067 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4519-1./A61067.fastq	SRR5912869	@dbgap@:reads/SRP011999/SRS2416209/SRX3073859/SRR5912869/SRR5912869.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPVTA-09A-02R.fusion.vcf	3			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-02R	RNA	EFO	SRS2416209	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-02R A61067 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61067	SRX3073859	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPVTA-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPVTA-09A-02R A61067 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4519-1./A61067.fastq	SRR5912869	@dbgap@:reads/SRP011999/SRS2416209/SRX3073859/SRR5912869/SRR5912869.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPVTA-09A-02R.indel.vcf	3			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-02R	RNA	EFO	SRS2416209	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPVTA-09A-02R A61067 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61067	SRX3073859	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPVTA-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PAPVTA-09A-02R A61067 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4519-1./A61067.fastq	SRR5912869	@dbgap@:reads/SRP011999/SRS2416209/SRX3073859/SRR5912869/SRR5912869.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-10-PAPVTA-09A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Tab:01	TARGET-10-PAPVTA-09A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZNK-04A-01R	RNA	EFO	SRS602175	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZNK-04A-01R A32761 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32761	SRX547602	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPZNK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPZNK-04A-01R A32761 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2293-1..1/A32761.fastq	SRR1797119	@dbgap@:reads/SRP011999/SRS602175/SRX547602/SRR1797119/SRR1797119.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_4_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292975	@dbgap@:reads/SRP011999/SRS602175/SRX547602/SRR1292975/SRR1292975.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPZNK-04A-01R.exon.quantification.txt	3			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZNK-04A-01R	RNA	EFO	SRS602175	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZNK-04A-01R A32761 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32761	SRX547602	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPZNK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPZNK-04A-01R A32761 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2293-1..1/A32761.fastq	SRR1797119	@dbgap@:reads/SRP011999/SRS602175/SRX547602/SRR1797119/SRR1797119.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_4_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292975	@dbgap@:reads/SRP011999/SRS602175/SRX547602/SRR1292975/SRR1292975.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPZNK-04A-01R.gene.quantification.txt	3			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZNK-04A-01R	RNA	EFO	SRS602175	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZNK-04A-01R A32761 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32761	SRX547602	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPZNK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPZNK-04A-01R A32761 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2293-1..1/A32761.fastq	SRR1797119	@dbgap@:reads/SRP011999/SRS602175/SRX547602/SRR1797119/SRR1797119.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_4_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292975	@dbgap@:reads/SRP011999/SRS602175/SRX547602/SRR1292975/SRR1292975.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPZNK-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZNK-04A-01R	RNA	EFO	SRS602175	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZNK-04A-01R A32761 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32761	SRX547602	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPZNK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPZNK-04A-01R A32761 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2293-1..1/A32761.fastq	SRR1797119	@dbgap@:reads/SRP011999/SRS602175/SRX547602/SRR1797119/SRR1797119.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_4_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292975	@dbgap@:reads/SRP011999/SRS602175/SRX547602/SRR1292975/SRR1292975.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPZNK-04A-01R.fusion.vcf	3			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZNK-04A-01R	RNA	EFO	SRS602175	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZNK-04A-01R A32761 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32761	SRX547602	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPZNK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPZNK-04A-01R A32761 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2293-1..1/A32761.fastq	SRR1797119	@dbgap@:reads/SRP011999/SRS602175/SRX547602/SRR1797119/SRR1797119.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_4_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292975	@dbgap@:reads/SRP011999/SRS602175/SRX547602/SRR1292975/SRR1292975.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPZNK-04A-01R.indel.vcf	3			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZNK-04A-01R	RNA	EFO	SRS602175	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZNK-04A-01R A32761 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32761	SRX547602	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPZNK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPZNK-04A-01R A32761 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2293-1..1/A32761.fastq	SRR1797119	@dbgap@:reads/SRP011999/SRS602175/SRX547602/SRR1797119/SRR1797119.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_4_GCCAAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292975	@dbgap@:reads/SRP011999/SRS602175/SRX547602/SRR1292975/SRR1292975.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPZNK-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZNK-09A-01R	RNA	EFO	SRS602127	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZNK-09A-01R A32762 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32762	SRX547626	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPZNK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPZNK-09A-01R A32762 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2294-1..1/A32762.fastq	SRR1791038	@dbgap@:reads/SRP011999/SRS602127/SRX547626/SRR1791038/SRR1791038.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_5_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292956	@dbgap@:reads/SRP011999/SRS602127/SRX547626/SRR1292956/SRR1292956.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPZNK-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZNK-09A-01R	RNA	EFO	SRS602127	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZNK-09A-01R A32762 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32762	SRX547626	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPZNK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPZNK-09A-01R A32762 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2294-1..1/A32762.fastq	SRR1791038	@dbgap@:reads/SRP011999/SRS602127/SRX547626/SRR1791038/SRR1791038.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_5_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292956	@dbgap@:reads/SRP011999/SRS602127/SRX547626/SRR1292956/SRR1292956.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPZNK-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZNK-09A-01R	RNA	EFO	SRS602127	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZNK-09A-01R A32762 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32762	SRX547626	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPZNK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPZNK-09A-01R A32762 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2294-1..1/A32762.fastq	SRR1791038	@dbgap@:reads/SRP011999/SRS602127/SRX547626/SRR1791038/SRR1791038.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_5_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292956	@dbgap@:reads/SRP011999/SRS602127/SRX547626/SRR1292956/SRR1292956.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPZNK-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZNK-09A-01R	RNA	EFO	SRS602127	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZNK-09A-01R A32762 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32762	SRX547626	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPZNK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPZNK-09A-01R A32762 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2294-1..1/A32762.fastq	SRR1791038	@dbgap@:reads/SRP011999/SRS602127/SRX547626/SRR1791038/SRR1791038.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_5_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292956	@dbgap@:reads/SRP011999/SRS602127/SRX547626/SRR1292956/SRR1292956.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPZNK-09A-01R.fusion.vcf	3			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZNK-09A-01R	RNA	EFO	SRS602127	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZNK-09A-01R A32762 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32762	SRX547626	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPZNK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPZNK-09A-01R A32762 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2294-1..1/A32762.fastq	SRR1791038	@dbgap@:reads/SRP011999/SRS602127/SRX547626/SRR1791038/SRR1791038.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_5_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292956	@dbgap@:reads/SRP011999/SRS602127/SRX547626/SRR1292956/SRR1292956.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPZNK-09A-01R.indel.vcf	3			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZNK-09A-01R	RNA	EFO	SRS602127	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZNK-09A-01R A32762 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32762	SRX547626	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPZNK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPZNK-09A-01R A32762 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2294-1..1/A32762.fastq	SRR1791038	@dbgap@:reads/SRP011999/SRS602127/SRX547626/SRR1791038/SRR1791038.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_5_AAAGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292956	@dbgap@:reads/SRP011999/SRS602127/SRX547626/SRR1292956/SRR1292956.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPZNK-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZST-04A-01R	RNA	EFO	SRS602111	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZST-04A-01R A32763 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32763	SRX547613	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPZST-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPZST-04A-01R A32763 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2297-1..1/A32763.fastq	SRR1797094	@dbgap@:reads/SRP011999/SRS602111/SRX547613/SRR1797094/SRR1797094.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_8_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292979	@dbgap@:reads/SRP011999/SRS602111/SRX547613/SRR1292979/SRR1292979.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPZST-04A-01R.exon.quantification.txt	3			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZST-04A-01R	RNA	EFO	SRS602111	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZST-04A-01R A32763 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32763	SRX547613	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPZST-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPZST-04A-01R A32763 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2297-1..1/A32763.fastq	SRR1797094	@dbgap@:reads/SRP011999/SRS602111/SRX547613/SRR1797094/SRR1797094.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_8_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292979	@dbgap@:reads/SRP011999/SRS602111/SRX547613/SRR1292979/SRR1292979.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPZST-04A-01R.gene.quantification.txt	3			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZST-04A-01R	RNA	EFO	SRS602111	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZST-04A-01R A32763 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32763	SRX547613	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPZST-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPZST-04A-01R A32763 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2297-1..1/A32763.fastq	SRR1797094	@dbgap@:reads/SRP011999/SRS602111/SRX547613/SRR1797094/SRR1797094.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_8_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292979	@dbgap@:reads/SRP011999/SRS602111/SRX547613/SRR1292979/SRR1292979.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPZST-04A-01R.isoform.quantification.txt	3			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZST-04A-01R	RNA	EFO	SRS602111	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZST-04A-01R A32763 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32763	SRX547613	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPZST-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPZST-04A-01R A32763 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2297-1..1/A32763.fastq	SRR1797094	@dbgap@:reads/SRP011999/SRS602111/SRX547613/SRR1797094/SRR1797094.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_8_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292979	@dbgap@:reads/SRP011999/SRS602111/SRX547613/SRR1292979/SRR1292979.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPZST-04A-01R.fusion.vcf	3			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZST-04A-01R	RNA	EFO	SRS602111	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZST-04A-01R A32763 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32763	SRX547613	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPZST-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPZST-04A-01R A32763 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2297-1..1/A32763.fastq	SRR1797094	@dbgap@:reads/SRP011999/SRS602111/SRX547613/SRR1797094/SRR1797094.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_8_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292979	@dbgap@:reads/SRP011999/SRS602111/SRX547613/SRR1292979/SRR1292979.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPZST-04A-01R.indel.vcf	3			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZST-04A-01R	RNA	EFO	SRS602111	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZST-04A-01R A32763 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32763	SRX547613	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPZST-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPZST-04A-01R A32763 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2297-1..1/A32763.fastq	SRR1797094	@dbgap@:reads/SRP011999/SRS602111/SRX547613/SRR1797094/SRR1797094.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_8_AATAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292979	@dbgap@:reads/SRP011999/SRS602111/SRX547613/SRR1292979/SRR1292979.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPZST-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZST-09A-01R	RNA	EFO	SRS602106	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZST-09A-01R A32764 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32764	SRX547568	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPZST-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPZST-09A-01R A32764 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2292-1..1/A32764.fastq	SRR1791030	@dbgap@:reads/SRP011999/SRS602106/SRX547568/SRR1791030/SRR1791030.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_3_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293013	@dbgap@:reads/SRP011999/SRS602106/SRX547568/SRR1293013/SRR1293013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPZST-09A-01R.exon.quantification.txt	3			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZST-09A-01R	RNA	EFO	SRS602106	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZST-09A-01R A32764 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32764	SRX547568	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPZST-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPZST-09A-01R A32764 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2292-1..1/A32764.fastq	SRR1791030	@dbgap@:reads/SRP011999/SRS602106/SRX547568/SRR1791030/SRR1791030.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_3_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293013	@dbgap@:reads/SRP011999/SRS602106/SRX547568/SRR1293013/SRR1293013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPZST-09A-01R.gene.quantification.txt	3			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZST-09A-01R	RNA	EFO	SRS602106	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZST-09A-01R A32764 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32764	SRX547568	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPZST-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPZST-09A-01R A32764 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2292-1..1/A32764.fastq	SRR1791030	@dbgap@:reads/SRP011999/SRS602106/SRX547568/SRR1791030/SRR1791030.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_3_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293013	@dbgap@:reads/SRP011999/SRS602106/SRX547568/SRR1293013/SRR1293013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PAPZST-09A-01R.isoform.quantification.txt	3			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZST-09A-01R	RNA	EFO	SRS602106	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZST-09A-01R A32764 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32764	SRX547568	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPZST-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPZST-09A-01R A32764 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2292-1..1/A32764.fastq	SRR1791030	@dbgap@:reads/SRP011999/SRS602106/SRX547568/SRR1791030/SRR1791030.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_3_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293013	@dbgap@:reads/SRP011999/SRS602106/SRX547568/SRR1293013/SRR1293013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPZST-09A-01R.fusion.vcf	3			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZST-09A-01R	RNA	EFO	SRS602106	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZST-09A-01R A32764 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32764	SRX547568	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPZST-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPZST-09A-01R A32764 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2292-1..1/A32764.fastq	SRR1791030	@dbgap@:reads/SRP011999/SRS602106/SRX547568/SRR1791030/SRR1791030.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_3_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293013	@dbgap@:reads/SRP011999/SRS602106/SRX547568/SRR1293013/SRR1293013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PAPZST-09A-01R.indel.vcf	3			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZST-09A-01R	RNA	EFO	SRS602106	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPZST-09A-01R A32764 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32764	SRX547568	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PAPZST-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PAPZST-09A-01R A32764 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2292-1..1/A32764.fastq	SRR1791030	@dbgap@:reads/SRP011999/SRS602106/SRX547568/SRR1791030/SRR1791030.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_3_AGAAGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293013	@dbgap@:reads/SRP011999/SRS602106/SRX547568/SRR1293013/SRR1293013.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PAPZST-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARACA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARACA-09A-01R	RNA	EFO	SRS602176	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARACA-09A-01R A32780 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32780	SRX547581	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARACA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARACA-09A-01R A32780 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2260-1./A32780.fastq	SRR1797076	@dbgap@:reads/SRP011999/SRS602176/SRX547581/SRR1797076/SRR1797076.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_2_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292950	@dbgap@:reads/SRP011999/SRS602176/SRX547581/SRR1292950/SRR1292950.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARACA-09A-01R.exon.quantification.txt	3			
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARACA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARACA-09A-01R	RNA	EFO	SRS602176	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARACA-09A-01R A32780 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32780	SRX547581	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARACA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARACA-09A-01R A32780 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2260-1./A32780.fastq	SRR1797076	@dbgap@:reads/SRP011999/SRS602176/SRX547581/SRR1797076/SRR1797076.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_2_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292950	@dbgap@:reads/SRP011999/SRS602176/SRX547581/SRR1292950/SRR1292950.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARACA-09A-01R.gene.quantification.txt	3			
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARACA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARACA-09A-01R	RNA	EFO	SRS602176	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARACA-09A-01R A32780 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32780	SRX547581	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARACA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARACA-09A-01R A32780 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2260-1./A32780.fastq	SRR1797076	@dbgap@:reads/SRP011999/SRS602176/SRX547581/SRR1797076/SRR1797076.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_2_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292950	@dbgap@:reads/SRP011999/SRS602176/SRX547581/SRR1292950/SRR1292950.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARACA-09A-01R.isoform.quantification.txt	3			
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARACA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARACA-09A-01R	RNA	EFO	SRS602176	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARACA-09A-01R A32780 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32780	SRX547581	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARACA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARACA-09A-01R A32780 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2260-1./A32780.fastq	SRR1797076	@dbgap@:reads/SRP011999/SRS602176/SRX547581/SRR1797076/SRR1797076.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_2_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292950	@dbgap@:reads/SRP011999/SRS602176/SRX547581/SRR1292950/SRR1292950.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARACA-09A-01R.fusion.vcf	3			
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARACA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARACA-09A-01R	RNA	EFO	SRS602176	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARACA-09A-01R A32780 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32780	SRX547581	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARACA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARACA-09A-01R A32780 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2260-1./A32780.fastq	SRR1797076	@dbgap@:reads/SRP011999/SRS602176/SRX547581/SRR1797076/SRR1797076.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_2_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292950	@dbgap@:reads/SRP011999/SRS602176/SRX547581/SRR1292950/SRR1292950.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARACA-09A-01R.indel.vcf	3			
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARACA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARACA-09A-01R	RNA	EFO	SRS602176	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARACA-09A-01R A32780 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32780	SRX547581	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARACA-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARACA-09A-01R A32780 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2260-1./A32780.fastq	SRR1797076	@dbgap@:reads/SRP011999/SRS602176/SRX547581/SRR1797076/SRR1797076.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B8ACXX_2_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292950	@dbgap@:reads/SRP011999/SRS602176/SRX547581/SRR1292950/SRR1292950.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARACA-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAKF-04A-01R	RNA	EFO	SRS602160	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAKF-04A-01R A32757 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32757	SRX547597	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARAKF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PARAKF-04A-01R A32757 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2290-1..1/A32757.fastq	SRR1790996	@dbgap@:reads/SRP011999/SRS602160/SRX547597/SRR1790996/SRR1790996.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_1_GAAACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292955	@dbgap@:reads/SRP011999/SRS602160/SRX547597/SRR1292955/SRR1292955.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARAKF-04A-01R.exon.quantification.txt	3			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAKF-04A-01R	RNA	EFO	SRS602160	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAKF-04A-01R A32757 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32757	SRX547597	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARAKF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PARAKF-04A-01R A32757 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2290-1..1/A32757.fastq	SRR1790996	@dbgap@:reads/SRP011999/SRS602160/SRX547597/SRR1790996/SRR1790996.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_1_GAAACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292955	@dbgap@:reads/SRP011999/SRS602160/SRX547597/SRR1292955/SRR1292955.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARAKF-04A-01R.gene.quantification.txt	3			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAKF-04A-01R	RNA	EFO	SRS602160	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAKF-04A-01R A32757 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32757	SRX547597	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARAKF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PARAKF-04A-01R A32757 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2290-1..1/A32757.fastq	SRR1790996	@dbgap@:reads/SRP011999/SRS602160/SRX547597/SRR1790996/SRR1790996.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_1_GAAACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292955	@dbgap@:reads/SRP011999/SRS602160/SRX547597/SRR1292955/SRR1292955.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARAKF-04A-01R.isoform.quantification.txt	3			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAKF-04A-01R	RNA	EFO	SRS602160	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAKF-04A-01R A32757 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32757	SRX547597	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARAKF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PARAKF-04A-01R A32757 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2290-1..1/A32757.fastq	SRR1790996	@dbgap@:reads/SRP011999/SRS602160/SRX547597/SRR1790996/SRR1790996.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_1_GAAACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292955	@dbgap@:reads/SRP011999/SRS602160/SRX547597/SRR1292955/SRR1292955.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARAKF-04A-01R.fusion.vcf	3			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAKF-04A-01R	RNA	EFO	SRS602160	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAKF-04A-01R A32757 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32757	SRX547597	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARAKF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PARAKF-04A-01R A32757 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2290-1..1/A32757.fastq	SRR1790996	@dbgap@:reads/SRP011999/SRS602160/SRX547597/SRR1790996/SRR1790996.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_1_GAAACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292955	@dbgap@:reads/SRP011999/SRS602160/SRX547597/SRR1292955/SRR1292955.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARAKF-04A-01R.indel.vcf	3			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAKF-04A-01R	RNA	EFO	SRS602160	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAKF-04A-01R A32757 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32757	SRX547597	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARAKF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PARAKF-04A-01R A32757 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2290-1..1/A32757.fastq	SRR1790996	@dbgap@:reads/SRP011999/SRS602160/SRX547597/SRR1790996/SRR1790996.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_1_GAAACC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292955	@dbgap@:reads/SRP011999/SRS602160/SRX547597/SRR1292955/SRR1292955.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARAKF-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAKF-09A-01R	RNA	EFO	SRS602144	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAKF-09A-01R A32758 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32758	SRX547628	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARAKF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PARAKF-09A-01R A32758 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2282-1./A32758.fastq	SRR1791071	@dbgap@:reads/SRP011999/SRS602144/SRX547628/SRR1791071/SRR1791071.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_1_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292952	@dbgap@:reads/SRP011999/SRS602144/SRX547628/SRR1292952/SRR1292952.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARAKF-09A-01R.exon.quantification.txt	3			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAKF-09A-01R	RNA	EFO	SRS602144	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAKF-09A-01R A32758 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32758	SRX547628	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARAKF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PARAKF-09A-01R A32758 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2282-1./A32758.fastq	SRR1791071	@dbgap@:reads/SRP011999/SRS602144/SRX547628/SRR1791071/SRR1791071.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_1_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292952	@dbgap@:reads/SRP011999/SRS602144/SRX547628/SRR1292952/SRR1292952.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARAKF-09A-01R.gene.quantification.txt	3			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAKF-09A-01R	RNA	EFO	SRS602144	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAKF-09A-01R A32758 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32758	SRX547628	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARAKF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PARAKF-09A-01R A32758 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2282-1./A32758.fastq	SRR1791071	@dbgap@:reads/SRP011999/SRS602144/SRX547628/SRR1791071/SRR1791071.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_1_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292952	@dbgap@:reads/SRP011999/SRS602144/SRX547628/SRR1292952/SRR1292952.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARAKF-09A-01R.isoform.quantification.txt	3			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAKF-09A-01R	RNA	EFO	SRS602144	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAKF-09A-01R A32758 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32758	SRX547628	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARAKF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PARAKF-09A-01R A32758 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2282-1./A32758.fastq	SRR1791071	@dbgap@:reads/SRP011999/SRS602144/SRX547628/SRR1791071/SRR1791071.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_1_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292952	@dbgap@:reads/SRP011999/SRS602144/SRX547628/SRR1292952/SRR1292952.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARAKF-09A-01R.fusion.vcf	3			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAKF-09A-01R	RNA	EFO	SRS602144	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAKF-09A-01R A32758 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32758	SRX547628	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARAKF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PARAKF-09A-01R A32758 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2282-1./A32758.fastq	SRR1791071	@dbgap@:reads/SRP011999/SRS602144/SRX547628/SRR1791071/SRR1791071.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_1_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292952	@dbgap@:reads/SRP011999/SRS602144/SRX547628/SRR1292952/SRR1292952.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARAKF-09A-01R.indel.vcf	3			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAKF-09A-01R	RNA	EFO	SRS602144	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAKF-09A-01R A32758 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32758	SRX547628	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARAKF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PARAKF-09A-01R A32758 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2282-1./A32758.fastq	SRR1791071	@dbgap@:reads/SRP011999/SRS602144/SRX547628/SRR1791071/SRR1791071.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_1_GCCTTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292952	@dbgap@:reads/SRP011999/SRS602144/SRX547628/SRR1292952/SRR1292952.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARAKF-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARARJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARARJ-09A-01R	RNA	EFO	SRS602125	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARARJ-09A-01R A32749 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32749	SRX547580	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARARJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARARJ-09A-01R A32749 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2268-1./A32749.fastq	SRR1791113	@dbgap@:reads/SRP011999/SRS602125/SRX547580/SRR1791113/SRR1791113.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_3_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293001	@dbgap@:reads/SRP011999/SRS602125/SRX547580/SRR1293001/SRR1293001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARARJ-09A-01R.exon.quantification.txt	3			
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARARJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARARJ-09A-01R	RNA	EFO	SRS602125	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARARJ-09A-01R A32749 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32749	SRX547580	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARARJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARARJ-09A-01R A32749 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2268-1./A32749.fastq	SRR1791113	@dbgap@:reads/SRP011999/SRS602125/SRX547580/SRR1791113/SRR1791113.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_3_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293001	@dbgap@:reads/SRP011999/SRS602125/SRX547580/SRR1293001/SRR1293001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARARJ-09A-01R.gene.quantification.txt	3			
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARARJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARARJ-09A-01R	RNA	EFO	SRS602125	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARARJ-09A-01R A32749 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32749	SRX547580	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARARJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARARJ-09A-01R A32749 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2268-1./A32749.fastq	SRR1791113	@dbgap@:reads/SRP011999/SRS602125/SRX547580/SRR1791113/SRR1791113.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_3_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293001	@dbgap@:reads/SRP011999/SRS602125/SRX547580/SRR1293001/SRR1293001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARARJ-09A-01R.isoform.quantification.txt	3			
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARARJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARARJ-09A-01R	RNA	EFO	SRS602125	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARARJ-09A-01R A32749 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32749	SRX547580	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARARJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARARJ-09A-01R A32749 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2268-1./A32749.fastq	SRR1791113	@dbgap@:reads/SRP011999/SRS602125/SRX547580/SRR1791113/SRR1791113.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_3_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293001	@dbgap@:reads/SRP011999/SRS602125/SRX547580/SRR1293001/SRR1293001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARARJ-09A-01R.fusion.vcf	3			
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARARJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARARJ-09A-01R	RNA	EFO	SRS602125	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARARJ-09A-01R A32749 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32749	SRX547580	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARARJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARARJ-09A-01R A32749 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2268-1./A32749.fastq	SRR1791113	@dbgap@:reads/SRP011999/SRS602125/SRX547580/SRR1791113/SRR1791113.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_3_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293001	@dbgap@:reads/SRP011999/SRS602125/SRX547580/SRR1293001/SRR1293001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARARJ-09A-01R.indel.vcf	3			
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARARJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARARJ-09A-01R	RNA	EFO	SRS602125	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARARJ-09A-01R A32749 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32749	SRX547580	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARARJ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARARJ-09A-01R A32749 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2268-1./A32749.fastq	SRR1791113	@dbgap@:reads/SRP011999/SRS602125/SRX547580/SRR1791113/SRR1791113.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_3_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293001	@dbgap@:reads/SRP011999/SRS602125/SRX547580/SRR1293001/SRR1293001.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARARJ-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARASZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARASZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARASZ-09A-01R	RNA	EFO	SRS1284189	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARASZ-09A-01R SJALL015582_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	158	36.3	SJALL015582_D1_RNASEQ_1	SRX1571362		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARASZ-09A-01R SJALL015582_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARASZ-09A-01R.fastq	SRR3162129	@dbgap@:reads/SRP011999/SRS1284189/SRX1571362/SRR3162129/SRR3162129.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARASZ-09A-01R.expression.txt	3			
TARGET-10-PARASZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARASZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARASZ-09A-01R	RNA	EFO	SRS1284189	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARASZ-09A-01R SJALL015582_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	158	36.3	SJALL015582_D1_RNASEQ_1	SRX1571362		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARASZ-09A-01R SJALL015582_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARASZ-09A-01R.fastq	SRR3162129	@dbgap@:reads/SRP011999/SRS1284189/SRX1571362/SRR3162129/SRR3162129.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARAYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARAYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARAYM-09A-01R	RNA	EFO	SRS1284188	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARAYM-09A-01R SJALL015586_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	39.2	SJALL015586_D1_RNASEQ_1	SRX1571363		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARAYM-09A-01R SJALL015586_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARAYM-09A-01R.fastq	SRR3162130	@dbgap@:reads/SRP011999/SRS1284188/SRX1571363/SRR3162130/SRR3162130.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARAYM-09A-01R.expression.txt	3			
TARGET-10-PARAYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARAYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARAYM-09A-01R	RNA	EFO	SRS1284188	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARAYM-09A-01R SJALL015586_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	39.2	SJALL015586_D1_RNASEQ_1	SRX1571363		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARAYM-09A-01R SJALL015586_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARAYM-09A-01R.fastq	SRR3162130	@dbgap@:reads/SRP011999/SRS1284188/SRX1571363/SRR3162130/SRR3162130.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBRK-04A-01R	RNA	EFO	SRS602103	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBRK-04A-01R A32617 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32617	SRX543421	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBRK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARBRK-04A-01R A32617 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2232-1./A32617.fastq	SRR1797126	@dbgap@:reads/SRP011999/SRS602103/SRX543421/SRR1797126/SRR1797126.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_5_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288041	@dbgap@:reads/SRP011999/SRS602103/SRX543421/SRR1288041/SRR1288041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARBRK-04A-01R.exon.quantification.txt	3			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBRK-04A-01R	RNA	EFO	SRS602103	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBRK-04A-01R A32617 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32617	SRX543421	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBRK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARBRK-04A-01R A32617 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2232-1./A32617.fastq	SRR1797126	@dbgap@:reads/SRP011999/SRS602103/SRX543421/SRR1797126/SRR1797126.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_5_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288041	@dbgap@:reads/SRP011999/SRS602103/SRX543421/SRR1288041/SRR1288041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARBRK-04A-01R.gene.quantification.txt	3			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBRK-04A-01R	RNA	EFO	SRS602103	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBRK-04A-01R A32617 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32617	SRX543421	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBRK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARBRK-04A-01R A32617 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2232-1./A32617.fastq	SRR1797126	@dbgap@:reads/SRP011999/SRS602103/SRX543421/SRR1797126/SRR1797126.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_5_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288041	@dbgap@:reads/SRP011999/SRS602103/SRX543421/SRR1288041/SRR1288041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARBRK-04A-01R.isoform.quantification.txt	3			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBRK-04A-01R	RNA	EFO	SRS602103	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBRK-04A-01R A32617 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32617	SRX543421	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBRK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARBRK-04A-01R A32617 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2232-1./A32617.fastq	SRR1797126	@dbgap@:reads/SRP011999/SRS602103/SRX543421/SRR1797126/SRR1797126.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_5_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288041	@dbgap@:reads/SRP011999/SRS602103/SRX543421/SRR1288041/SRR1288041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARBRK-04A-01R.fusion.vcf	3			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBRK-04A-01R	RNA	EFO	SRS602103	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBRK-04A-01R A32617 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32617	SRX543421	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBRK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARBRK-04A-01R A32617 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2232-1./A32617.fastq	SRR1797126	@dbgap@:reads/SRP011999/SRS602103/SRX543421/SRR1797126/SRR1797126.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_5_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288041	@dbgap@:reads/SRP011999/SRS602103/SRX543421/SRR1288041/SRR1288041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARBRK-04A-01R.indel.vcf	3			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBRK-04A-01R	RNA	EFO	SRS602103	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBRK-04A-01R A32617 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32617	SRX543421	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBRK-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARBRK-04A-01R A32617 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2232-1./A32617.fastq	SRR1797126	@dbgap@:reads/SRP011999/SRS602103/SRX543421/SRR1797126/SRR1797126.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_5_TAATCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288041	@dbgap@:reads/SRP011999/SRS602103/SRX543421/SRR1288041/SRR1288041.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARBRK-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBRK-09A-01R	RNA	EFO	SRS602099	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBRK-09A-01R A32618 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32618	SRX543418	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBRK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARBRK-09A-01R A32618 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2239-1./A32618.fastq	SRR1791103	@dbgap@:reads/SRP011999/SRS602099/SRX543418/SRR1791103/SRR1791103.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_6_TGAATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288054	@dbgap@:reads/SRP011999/SRS602099/SRX543418/SRR1288054/SRR1288054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARBRK-09A-01R.exon.quantification.txt	3			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBRK-09A-01R	RNA	EFO	SRS602099	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBRK-09A-01R A32618 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32618	SRX543418	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBRK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARBRK-09A-01R A32618 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2239-1./A32618.fastq	SRR1791103	@dbgap@:reads/SRP011999/SRS602099/SRX543418/SRR1791103/SRR1791103.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_6_TGAATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288054	@dbgap@:reads/SRP011999/SRS602099/SRX543418/SRR1288054/SRR1288054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARBRK-09A-01R.gene.quantification.txt	3			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBRK-09A-01R	RNA	EFO	SRS602099	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBRK-09A-01R A32618 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32618	SRX543418	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBRK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARBRK-09A-01R A32618 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2239-1./A32618.fastq	SRR1791103	@dbgap@:reads/SRP011999/SRS602099/SRX543418/SRR1791103/SRR1791103.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_6_TGAATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288054	@dbgap@:reads/SRP011999/SRS602099/SRX543418/SRR1288054/SRR1288054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARBRK-09A-01R.isoform.quantification.txt	3			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBRK-09A-01R	RNA	EFO	SRS602099	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBRK-09A-01R A32618 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32618	SRX543418	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBRK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARBRK-09A-01R A32618 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2239-1./A32618.fastq	SRR1791103	@dbgap@:reads/SRP011999/SRS602099/SRX543418/SRR1791103/SRR1791103.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_6_TGAATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288054	@dbgap@:reads/SRP011999/SRS602099/SRX543418/SRR1288054/SRR1288054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARBRK-09A-01R.fusion.vcf	3			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBRK-09A-01R	RNA	EFO	SRS602099	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBRK-09A-01R A32618 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32618	SRX543418	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBRK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARBRK-09A-01R A32618 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2239-1./A32618.fastq	SRR1791103	@dbgap@:reads/SRP011999/SRS602099/SRX543418/SRR1791103/SRR1791103.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_6_TGAATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288054	@dbgap@:reads/SRP011999/SRS602099/SRX543418/SRR1288054/SRR1288054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARBRK-09A-01R.indel.vcf	3			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBRK-09A-01R	RNA	EFO	SRS602099	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBRK-09A-01R A32618 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32618	SRX543418	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBRK-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARBRK-09A-01R A32618 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2239-1./A32618.fastq	SRR1791103	@dbgap@:reads/SRP011999/SRS602099/SRX543418/SRR1791103/SRR1791103.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_6_TGAATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288054	@dbgap@:reads/SRP011999/SRS602099/SRX543418/SRR1288054/SRR1288054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARBRK-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBVI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-04A-01R	RNA	EFO	SRS602083	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-04A-01R A32619 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32619	SRX543463	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBVI-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARBVI-04A-01R A32619 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2254-1./A32619.fastq	SRR1790990	@dbgap@:reads/SRP011999/SRS602083/SRX543463/SRR1790990/SRR1790990.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_5_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288032	@dbgap@:reads/SRP011999/SRS602083/SRX543463/SRR1288032/SRR1288032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARBVI-04A-01R.exon.quantification.txt	3			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBVI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-04A-01R	RNA	EFO	SRS602083	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-04A-01R A32619 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32619	SRX543463	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBVI-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARBVI-04A-01R A32619 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2254-1./A32619.fastq	SRR1790990	@dbgap@:reads/SRP011999/SRS602083/SRX543463/SRR1790990/SRR1790990.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_5_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288032	@dbgap@:reads/SRP011999/SRS602083/SRX543463/SRR1288032/SRR1288032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARBVI-04A-01R.gene.quantification.txt	3			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBVI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-04A-01R	RNA	EFO	SRS602083	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-04A-01R A32619 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32619	SRX543463	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBVI-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARBVI-04A-01R A32619 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2254-1./A32619.fastq	SRR1790990	@dbgap@:reads/SRP011999/SRS602083/SRX543463/SRR1790990/SRR1790990.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_5_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288032	@dbgap@:reads/SRP011999/SRS602083/SRX543463/SRR1288032/SRR1288032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARBVI-04A-01R.isoform.quantification.txt	3			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBVI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-04A-01R	RNA	EFO	SRS602083	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-04A-01R A32619 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32619	SRX543463	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBVI-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARBVI-04A-01R A32619 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2254-1./A32619.fastq	SRR1790990	@dbgap@:reads/SRP011999/SRS602083/SRX543463/SRR1790990/SRR1790990.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_5_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288032	@dbgap@:reads/SRP011999/SRS602083/SRX543463/SRR1288032/SRR1288032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARBVI-04A-01R.fusion.vcf	3			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBVI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-04A-01R	RNA	EFO	SRS602083	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-04A-01R A32619 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32619	SRX543463	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBVI-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARBVI-04A-01R A32619 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2254-1./A32619.fastq	SRR1790990	@dbgap@:reads/SRP011999/SRS602083/SRX543463/SRR1790990/SRR1790990.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_5_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288032	@dbgap@:reads/SRP011999/SRS602083/SRX543463/SRR1288032/SRR1288032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARBVI-04A-01R.indel.vcf	3			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBVI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-04A-01R	RNA	EFO	SRS602083	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-04A-01R A32619 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32619	SRX543463	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBVI-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARBVI-04A-01R A32619 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2254-1./A32619.fastq	SRR1790990	@dbgap@:reads/SRP011999/SRS602083/SRX543463/SRR1790990/SRR1790990.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_5_AGTTCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288032	@dbgap@:reads/SRP011999/SRS602083/SRX543463/SRR1288032/SRR1288032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARBVI-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-01R	RNA	EFO	SRS602067	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-01R A32620 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32620	SRX543435	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBVI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARBVI-09A-01R A32620 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2245-1./A32620.fastq	SRR1797118	@dbgap@:reads/SRP011999/SRS602067/SRX543435/SRR1797118/SRR1797118.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 1)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_4_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288073	@dbgap@:reads/SRP011999/SRS602067/SRX543435/SRR1288073/SRR1288073.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARBVI-09A-01R.exon.quantification.txt	3			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-01R	RNA	EFO	SRS602067	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-01R A32620 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32620	SRX543435	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBVI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARBVI-09A-01R A32620 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2245-1./A32620.fastq	SRR1797118	@dbgap@:reads/SRP011999/SRS602067/SRX543435/SRR1797118/SRR1797118.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 1)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_4_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288073	@dbgap@:reads/SRP011999/SRS602067/SRX543435/SRR1288073/SRR1288073.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARBVI-09A-01R.gene.quantification.txt	3			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-01R	RNA	EFO	SRS602067	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-01R A32620 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32620	SRX543435	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBVI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARBVI-09A-01R A32620 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2245-1./A32620.fastq	SRR1797118	@dbgap@:reads/SRP011999/SRS602067/SRX543435/SRR1797118/SRR1797118.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 1)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_4_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288073	@dbgap@:reads/SRP011999/SRS602067/SRX543435/SRR1288073/SRR1288073.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARBVI-09A-01R.isoform.quantification.txt	3			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-01R	RNA	EFO	SRS602067	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-01R A32620 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32620	SRX543435	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBVI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARBVI-09A-01R A32620 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2245-1./A32620.fastq	SRR1797118	@dbgap@:reads/SRP011999/SRS602067/SRX543435/SRR1797118/SRR1797118.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 1)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_4_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288073	@dbgap@:reads/SRP011999/SRS602067/SRX543435/SRR1288073/SRR1288073.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARBVI-09A-01R.fusion.vcf	3			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-01R	RNA	EFO	SRS602067	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-01R A32620 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32620	SRX543435	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBVI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARBVI-09A-01R A32620 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2245-1./A32620.fastq	SRR1797118	@dbgap@:reads/SRP011999/SRS602067/SRX543435/SRR1797118/SRR1797118.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 1)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_4_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288073	@dbgap@:reads/SRP011999/SRS602067/SRX543435/SRR1288073/SRR1288073.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARBVI-09A-01R.indel.vcf	3			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-01R	RNA	EFO	SRS602067	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-01R A32620 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32620	SRX543435	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBVI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARBVI-09A-01R A32620 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2245-1./A32620.fastq	SRR1797118	@dbgap@:reads/SRP011999/SRS602067/SRX543435/SRR1797118/SRR1797118.sra	1	"HIGH NON-GENIC CONTENT (exon-intron ratio < 1)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_4_CGATGT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288073	@dbgap@:reads/SRP011999/SRS602067/SRX543435/SRR1288073/SRR1288073.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARBVI-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-02R	RNA	EFO	SRS2416203	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-02R A61068 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61068	SRX3073865	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBVI-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PARBVI-09A-02R A61068 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4508-1./A61068.fastq	SRR5912863	@dbgap@:reads/SRP011999/SRS2416203/SRX3073865/SRR5912863/SRR5912863.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARBVI-09A-02R.exon.quantification.txt	3			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-02R	RNA	EFO	SRS2416203	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-02R A61068 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61068	SRX3073865	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBVI-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PARBVI-09A-02R A61068 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4508-1./A61068.fastq	SRR5912863	@dbgap@:reads/SRP011999/SRS2416203/SRX3073865/SRR5912863/SRR5912863.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARBVI-09A-02R.gene.quantification.txt	3			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-02R	RNA	EFO	SRS2416203	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-02R A61068 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61068	SRX3073865	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBVI-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PARBVI-09A-02R A61068 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4508-1./A61068.fastq	SRR5912863	@dbgap@:reads/SRP011999/SRS2416203/SRX3073865/SRR5912863/SRR5912863.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARBVI-09A-02R.isoform.quantification.txt	3			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-02R	RNA	EFO	SRS2416203	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-02R A61068 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61068	SRX3073865	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBVI-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PARBVI-09A-02R A61068 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4508-1./A61068.fastq	SRR5912863	@dbgap@:reads/SRP011999/SRS2416203/SRX3073865/SRR5912863/SRR5912863.sra	1								bcgsc.ca:Protocol:mRNAseq-Fusion-DeFuse:01		TARGET-10-PARBVI-09A-02R.results.filtered.tsv	3			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-02R	RNA	EFO	SRS2416203	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-02R A61068 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61068	SRX3073865	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBVI-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PARBVI-09A-02R A61068 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4508-1./A61068.fastq	SRR5912863	@dbgap@:reads/SRP011999/SRS2416203/SRX3073865/SRR5912863/SRR5912863.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARBVI-09A-02R.fusion.vcf	3			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-02R	RNA	EFO	SRS2416203	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-02R A61068 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61068	SRX3073865	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBVI-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PARBVI-09A-02R A61068 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4508-1./A61068.fastq	SRR5912863	@dbgap@:reads/SRP011999/SRS2416203/SRX3073865/SRR5912863/SRR5912863.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARBVI-09A-02R.indel.vcf	3			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-02R	RNA	EFO	SRS2416203	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBVI-09A-02R A61068 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61068	SRX3073865	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARBVI-09A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PARBVI-09A-02R A61068 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4508-1./A61068.fastq	SRR5912863	@dbgap@:reads/SRP011999/SRS2416203/SRX3073865/SRR5912863/SRR5912863.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-10-PARBVI-09A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Tab:01	TARGET-10-PARBVI-09A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARCHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARCHB-03A-02R	RNA	EFO	SRS602193	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARCHB-03A-02R A33605 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33605	SRX547645	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARCHB-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARCHB-03A-02R A33605 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2184-1./A33605.fastq	SRR1797065	@dbgap@:reads/SRP011999/SRS602193/SRX547645/SRR1797065/SRR1797065.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_8_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293038	@dbgap@:reads/SRP011999/SRS602193/SRX547645/SRR1293038/SRR1293038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARCHB-03A-02R.exon.quantification.txt	3			
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARCHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARCHB-03A-02R	RNA	EFO	SRS602193	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARCHB-03A-02R A33605 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33605	SRX547645	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARCHB-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARCHB-03A-02R A33605 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2184-1./A33605.fastq	SRR1797065	@dbgap@:reads/SRP011999/SRS602193/SRX547645/SRR1797065/SRR1797065.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_8_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293038	@dbgap@:reads/SRP011999/SRS602193/SRX547645/SRR1293038/SRR1293038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARCHB-03A-02R.gene.quantification.txt	3			
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARCHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARCHB-03A-02R	RNA	EFO	SRS602193	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARCHB-03A-02R A33605 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33605	SRX547645	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARCHB-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARCHB-03A-02R A33605 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2184-1./A33605.fastq	SRR1797065	@dbgap@:reads/SRP011999/SRS602193/SRX547645/SRR1797065/SRR1797065.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_8_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293038	@dbgap@:reads/SRP011999/SRS602193/SRX547645/SRR1293038/SRR1293038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARCHB-03A-02R.isoform.quantification.txt	3			
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARCHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARCHB-03A-02R	RNA	EFO	SRS602193	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARCHB-03A-02R A33605 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33605	SRX547645	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARCHB-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARCHB-03A-02R A33605 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2184-1./A33605.fastq	SRR1797065	@dbgap@:reads/SRP011999/SRS602193/SRX547645/SRR1797065/SRR1797065.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_8_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293038	@dbgap@:reads/SRP011999/SRS602193/SRX547645/SRR1293038/SRR1293038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARCHB-03A-02R.fusion.vcf	3			
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARCHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARCHB-03A-02R	RNA	EFO	SRS602193	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARCHB-03A-02R A33605 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33605	SRX547645	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARCHB-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARCHB-03A-02R A33605 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2184-1./A33605.fastq	SRR1797065	@dbgap@:reads/SRP011999/SRS602193/SRX547645/SRR1797065/SRR1797065.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_8_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293038	@dbgap@:reads/SRP011999/SRS602193/SRX547645/SRR1293038/SRR1293038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARCHB-03A-02R.indel.vcf	3			
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARCHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARCHB-03A-02R	RNA	EFO	SRS602193	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARCHB-03A-02R A33605 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33605	SRX547645	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARCHB-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARCHB-03A-02R A33605 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2184-1./A33605.fastq	SRR1797065	@dbgap@:reads/SRP011999/SRS602193/SRX547645/SRR1797065/SRR1797065.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34TCACXX_8_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293038	@dbgap@:reads/SRP011999/SRS602193/SRX547645/SRR1293038/SRR1293038.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARCHB-03A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARCVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCVM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARCVM-03A-01R	RNA	EFO	SRS1284187	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARCVM-03A-01R SJALL015255_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	37.3	SJALL015255_D1_RNASEQ_1	SRX1571364		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARCVM-03A-01R SJALL015255_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARCVM-03A-01R.fastq	SRR3162131	@dbgap@:reads/SRP011999/SRS1284187/SRX1571364/SRR3162131/SRR3162131.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARCVM-03A-01R.expression.txt	3			
TARGET-10-PARCVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCVM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARCVM-03A-01R	RNA	EFO	SRS1284187	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARCVM-03A-01R SJALL015255_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	37.3	SJALL015255_D1_RNASEQ_1	SRX1571364		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARCVM-03A-01R SJALL015255_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARCVM-03A-01R.fastq	SRR3162131	@dbgap@:reads/SRP011999/SRS1284187/SRX1571364/SRR3162131/SRR3162131.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWE-03A-01R	RNA	EFO	SRS602027	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWE-03A-01R A32621 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32621	SRX543408	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARDWE-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARDWE-03A-01R A32621 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2226-1./A32621.fastq	SRR1791060	@dbgap@:reads/SRP011999/SRS602027/SRX543408/SRR1791060/SRR1791060.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_7_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288070	@dbgap@:reads/SRP011999/SRS602027/SRX543408/SRR1288070/SRR1288070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARDWE-03A-01R.exon.quantification.txt	3			
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWE-03A-01R	RNA	EFO	SRS602027	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWE-03A-01R A32621 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32621	SRX543408	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARDWE-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARDWE-03A-01R A32621 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2226-1./A32621.fastq	SRR1791060	@dbgap@:reads/SRP011999/SRS602027/SRX543408/SRR1791060/SRR1791060.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_7_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288070	@dbgap@:reads/SRP011999/SRS602027/SRX543408/SRR1288070/SRR1288070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARDWE-03A-01R.gene.quantification.txt	3			
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWE-03A-01R	RNA	EFO	SRS602027	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWE-03A-01R A32621 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32621	SRX543408	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARDWE-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARDWE-03A-01R A32621 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2226-1./A32621.fastq	SRR1791060	@dbgap@:reads/SRP011999/SRS602027/SRX543408/SRR1791060/SRR1791060.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_7_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288070	@dbgap@:reads/SRP011999/SRS602027/SRX543408/SRR1288070/SRR1288070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARDWE-03A-01R.isoform.quantification.txt	3			
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWE-03A-01R	RNA	EFO	SRS602027	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWE-03A-01R A32621 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32621	SRX543408	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARDWE-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARDWE-03A-01R A32621 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2226-1./A32621.fastq	SRR1791060	@dbgap@:reads/SRP011999/SRS602027/SRX543408/SRR1791060/SRR1791060.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_7_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288070	@dbgap@:reads/SRP011999/SRS602027/SRX543408/SRR1288070/SRR1288070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARDWE-03A-01R.fusion.vcf	3			
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWE-03A-01R	RNA	EFO	SRS602027	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWE-03A-01R A32621 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32621	SRX543408	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARDWE-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARDWE-03A-01R A32621 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2226-1./A32621.fastq	SRR1791060	@dbgap@:reads/SRP011999/SRS602027/SRX543408/SRR1791060/SRR1791060.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_7_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288070	@dbgap@:reads/SRP011999/SRS602027/SRX543408/SRR1288070/SRR1288070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARDWE-03A-01R.indel.vcf	3			
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWE-03A-01R	RNA	EFO	SRS602027	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWE-03A-01R A32621 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32621	SRX543408	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARDWE-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARDWE-03A-01R A32621 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2226-1./A32621.fastq	SRR1791060	@dbgap@:reads/SRP011999/SRS602027/SRX543408/SRR1791060/SRR1791060.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_7_TAGCTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288070	@dbgap@:reads/SRP011999/SRS602027/SRX543408/SRR1288070/SRR1288070.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARDWE-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PAREGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAREGZ-09A-01R	RNA	EFO	SRS1284186	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAREGZ-09A-01R SJALL016630_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	39.4	SJALL016630_D1_RNASEQ_1	SRX1571365		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAREGZ-09A-01R SJALL016630_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAREGZ-09A-01R.fastq	SRR3162132	@dbgap@:reads/SRP011999/SRS1284186/SRX1571365/SRR3162132/SRR3162132.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PAREGZ-09A-01R.expression.txt	3			
TARGET-10-PAREGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAREGZ-09A-01R	RNA	EFO	SRS1284186	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAREGZ-09A-01R SJALL016630_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	39.4	SJALL016630_D1_RNASEQ_1	SRX1571365		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAREGZ-09A-01R SJALL016630_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAREGZ-09A-01R.fastq	SRR3162132	@dbgap@:reads/SRP011999/SRS1284186/SRX1571365/SRR3162132/SRR3162132.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARFDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARFDL-09A-01R	RNA	EFO	SRS1284185	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARFDL-09A-01R SJTALL002007_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	37.6	SJTALL002007_D1_RNASEQ_1	SRX1571366		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARFDL-09A-01R SJTALL002007_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARFDL-09A-01R.fastq	SRR3162133	@dbgap@:reads/SRP011999/SRS1284185/SRX1571366/SRR3162133/SRR3162133.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARFDL-09A-01R.expression.txt	3			
TARGET-10-PARFDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARFDL-09A-01R	RNA	EFO	SRS1284185	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARFDL-09A-01R SJTALL002007_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	37.6	SJTALL002007_D1_RNASEQ_1	SRX1571366		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARFDL-09A-01R SJTALL002007_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARFDL-09A-01R.fastq	SRR3162133	@dbgap@:reads/SRP011999/SRS1284185/SRX1571366/SRR3162133/SRR3162133.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARFIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFIH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARFIH-09A-01R	RNA	EFO	SRS1284184	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARFIH-09A-01R SJALL015241_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	178	40.9	SJALL015241_D1_RNASEQ_1	SRX1571367		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARFIH-09A-01R SJALL015241_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARFIH-09A-01R.fastq	SRR3162134	@dbgap@:reads/SRP011999/SRS1284184/SRX1571367/SRR3162134/SRR3162134.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARFIH-09A-01R.expression.txt	3			
TARGET-10-PARFIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFIH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARFIH-09A-01R	RNA	EFO	SRS1284184	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARFIH-09A-01R SJALL015241_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	178	40.9	SJALL015241_D1_RNASEQ_1	SRX1571367		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARFIH-09A-01R SJALL015241_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARFIH-09A-01R.fastq	SRR3162134	@dbgap@:reads/SRP011999/SRS1284184/SRX1571367/SRR3162134/SRR3162134.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFLV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFLV-04A-02R	RNA	EFO	SRS602210	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFLV-04A-02R A33609 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33609	SRX547683	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARFLV-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARFLV-04A-02R A33609 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2162-1./A33609.fastq	SRR1797106	@dbgap@:reads/SRP011999/SRS602210/SRX547683/SRR1797106/SRR1797106.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_2_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293043	@dbgap@:reads/SRP011999/SRS602210/SRX547683/SRR1293043/SRR1293043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARFLV-04A-02R.exon.quantification.txt	3			
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFLV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFLV-04A-02R	RNA	EFO	SRS602210	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFLV-04A-02R A33609 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33609	SRX547683	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARFLV-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARFLV-04A-02R A33609 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2162-1./A33609.fastq	SRR1797106	@dbgap@:reads/SRP011999/SRS602210/SRX547683/SRR1797106/SRR1797106.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_2_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293043	@dbgap@:reads/SRP011999/SRS602210/SRX547683/SRR1293043/SRR1293043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARFLV-04A-02R.gene.quantification.txt	3			
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFLV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFLV-04A-02R	RNA	EFO	SRS602210	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFLV-04A-02R A33609 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33609	SRX547683	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARFLV-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARFLV-04A-02R A33609 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2162-1./A33609.fastq	SRR1797106	@dbgap@:reads/SRP011999/SRS602210/SRX547683/SRR1797106/SRR1797106.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_2_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293043	@dbgap@:reads/SRP011999/SRS602210/SRX547683/SRR1293043/SRR1293043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARFLV-04A-02R.isoform.quantification.txt	3			
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFLV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFLV-04A-02R	RNA	EFO	SRS602210	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFLV-04A-02R A33609 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33609	SRX547683	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARFLV-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARFLV-04A-02R A33609 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2162-1./A33609.fastq	SRR1797106	@dbgap@:reads/SRP011999/SRS602210/SRX547683/SRR1797106/SRR1797106.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_2_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293043	@dbgap@:reads/SRP011999/SRS602210/SRX547683/SRR1293043/SRR1293043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARFLV-04A-02R.fusion.vcf	3			
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFLV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFLV-04A-02R	RNA	EFO	SRS602210	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFLV-04A-02R A33609 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33609	SRX547683	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARFLV-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARFLV-04A-02R A33609 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2162-1./A33609.fastq	SRR1797106	@dbgap@:reads/SRP011999/SRS602210/SRX547683/SRR1797106/SRR1797106.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_2_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293043	@dbgap@:reads/SRP011999/SRS602210/SRX547683/SRR1293043/SRR1293043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARFLV-04A-02R.indel.vcf	3			
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFLV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFLV-04A-02R	RNA	EFO	SRS602210	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFLV-04A-02R A33609 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33609	SRX547683	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARFLV-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARFLV-04A-02R A33609 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2162-1./A33609.fastq	SRR1797106	@dbgap@:reads/SRP011999/SRS602210/SRX547683/SRR1797106/SRR1797106.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34B7ACXX_2_CACCGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293043	@dbgap@:reads/SRP011999/SRS602210/SRX547683/SRR1293043/SRR1293043.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARFLV-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFLV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFLV-09A-01R	RNA	EFO	SRS602069	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFLV-09A-01R A32622 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32622	SRX543422	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARFLV-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARFLV-09A-01R A32622 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2247-1./A32622.fastq	SRR1791026	@dbgap@:reads/SRP011999/SRS602069/SRX543422/SRR1791026/SRR1791026.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_6_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288021	@dbgap@:reads/SRP011999/SRS602069/SRX543422/SRR1288021/SRR1288021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARFLV-09A-01R.exon.quantification.txt	3			
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFLV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFLV-09A-01R	RNA	EFO	SRS602069	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFLV-09A-01R A32622 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32622	SRX543422	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARFLV-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARFLV-09A-01R A32622 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2247-1./A32622.fastq	SRR1791026	@dbgap@:reads/SRP011999/SRS602069/SRX543422/SRR1791026/SRR1791026.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_6_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288021	@dbgap@:reads/SRP011999/SRS602069/SRX543422/SRR1288021/SRR1288021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARFLV-09A-01R.gene.quantification.txt	3			
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFLV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFLV-09A-01R	RNA	EFO	SRS602069	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFLV-09A-01R A32622 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32622	SRX543422	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARFLV-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARFLV-09A-01R A32622 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2247-1./A32622.fastq	SRR1791026	@dbgap@:reads/SRP011999/SRS602069/SRX543422/SRR1791026/SRR1791026.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_6_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288021	@dbgap@:reads/SRP011999/SRS602069/SRX543422/SRR1288021/SRR1288021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARFLV-09A-01R.isoform.quantification.txt	3			
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFLV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFLV-09A-01R	RNA	EFO	SRS602069	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFLV-09A-01R A32622 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32622	SRX543422	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARFLV-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARFLV-09A-01R A32622 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2247-1./A32622.fastq	SRR1791026	@dbgap@:reads/SRP011999/SRS602069/SRX543422/SRR1791026/SRR1791026.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_6_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288021	@dbgap@:reads/SRP011999/SRS602069/SRX543422/SRR1288021/SRR1288021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARFLV-09A-01R.fusion.vcf	3			
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFLV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFLV-09A-01R	RNA	EFO	SRS602069	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFLV-09A-01R A32622 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32622	SRX543422	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARFLV-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARFLV-09A-01R A32622 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2247-1./A32622.fastq	SRR1791026	@dbgap@:reads/SRP011999/SRS602069/SRX543422/SRR1791026/SRR1791026.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_6_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288021	@dbgap@:reads/SRP011999/SRS602069/SRX543422/SRR1288021/SRR1288021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARFLV-09A-01R.indel.vcf	3			
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFLV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFLV-09A-01R	RNA	EFO	SRS602069	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFLV-09A-01R A32622 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32622	SRX543422	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARFLV-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARFLV-09A-01R A32622 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2247-1./A32622.fastq	SRR1791026	@dbgap@:reads/SRP011999/SRS602069/SRX543422/SRR1791026/SRR1791026.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_6_AACTTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288021	@dbgap@:reads/SRP011999/SRS602069/SRX543422/SRR1288021/SRR1288021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARFLV-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARFPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARFPJ-09A-01R	RNA	EFO	SRS1284183	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARFPJ-09A-01R SJALL015242_D1-TARGET-10-PARFPJ-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	38.4	SJALL015242_D1-TARGET-10-PARFPJ-09A-01D	SRX1571368		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARFPJ-09A-01R SJALL015242_D1-TARGET-10-PARFPJ-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARFPJ-09A-01R.fastq	SRR3162135	@dbgap@:reads/SRP011999/SRS1284183/SRX1571368/SRR3162135/SRR3162135.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARFPJ-09A-01R.expression.txt	3			
TARGET-10-PARFPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARFPJ-09A-01R	RNA	EFO	SRS1284183	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARFPJ-09A-01R SJALL015242_D1-TARGET-10-PARFPJ-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	38.4	SJALL015242_D1-TARGET-10-PARFPJ-09A-01D	SRX1571368		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARFPJ-09A-01R SJALL015242_D1-TARGET-10-PARFPJ-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARFPJ-09A-01R.fastq	SRR3162135	@dbgap@:reads/SRP011999/SRS1284183/SRX1571368/SRR3162135/SRR3162135.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFTR-04A-01R	RNA	EFO	SRS602072	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFTR-04A-01R A32614 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32614	SRX543414	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARFTR-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARFTR-04A-01R A32614 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2243-1./A32614.fastq	SRR1797109	@dbgap@:reads/SRP011999/SRS602072/SRX543414/SRR1797109/SRR1797109.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_2_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288039	@dbgap@:reads/SRP011999/SRS602072/SRX543414/SRR1288039/SRR1288039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARFTR-04A-01R.exon.quantification.txt	3			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFTR-04A-01R	RNA	EFO	SRS602072	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFTR-04A-01R A32614 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32614	SRX543414	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARFTR-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARFTR-04A-01R A32614 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2243-1./A32614.fastq	SRR1797109	@dbgap@:reads/SRP011999/SRS602072/SRX543414/SRR1797109/SRR1797109.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_2_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288039	@dbgap@:reads/SRP011999/SRS602072/SRX543414/SRR1288039/SRR1288039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARFTR-04A-01R.gene.quantification.txt	3			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFTR-04A-01R	RNA	EFO	SRS602072	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFTR-04A-01R A32614 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32614	SRX543414	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARFTR-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARFTR-04A-01R A32614 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2243-1./A32614.fastq	SRR1797109	@dbgap@:reads/SRP011999/SRS602072/SRX543414/SRR1797109/SRR1797109.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_2_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288039	@dbgap@:reads/SRP011999/SRS602072/SRX543414/SRR1288039/SRR1288039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARFTR-04A-01R.isoform.quantification.txt	3			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFTR-04A-01R	RNA	EFO	SRS602072	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFTR-04A-01R A32614 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32614	SRX543414	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARFTR-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARFTR-04A-01R A32614 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2243-1./A32614.fastq	SRR1797109	@dbgap@:reads/SRP011999/SRS602072/SRX543414/SRR1797109/SRR1797109.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_2_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288039	@dbgap@:reads/SRP011999/SRS602072/SRX543414/SRR1288039/SRR1288039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARFTR-04A-01R.fusion.vcf	3			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFTR-04A-01R	RNA	EFO	SRS602072	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFTR-04A-01R A32614 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32614	SRX543414	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARFTR-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARFTR-04A-01R A32614 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2243-1./A32614.fastq	SRR1797109	@dbgap@:reads/SRP011999/SRS602072/SRX543414/SRR1797109/SRR1797109.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_2_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288039	@dbgap@:reads/SRP011999/SRS602072/SRX543414/SRR1288039/SRR1288039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARFTR-04A-01R.indel.vcf	3			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFTR-04A-01R	RNA	EFO	SRS602072	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFTR-04A-01R A32614 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32614	SRX543414	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARFTR-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARFTR-04A-01R A32614 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2243-1./A32614.fastq	SRR1797109	@dbgap@:reads/SRP011999/SRS602072/SRX543414/SRR1797109/SRR1797109.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_2_CCAACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288039	@dbgap@:reads/SRP011999/SRS602072/SRX543414/SRR1288039/SRR1288039.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARFTR-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFTR-09A-01R	RNA	EFO	SRS602089	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFTR-09A-01R A32615 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32615	SRX543434	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARFTR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARFTR-09A-01R A32615 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2240-1./A32615.fastq	SRR1797129	@dbgap@:reads/SRP011999/SRS602089/SRX543434/SRR1797129/SRR1797129.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_7_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288045	@dbgap@:reads/SRP011999/SRS602089/SRX543434/SRR1288045/SRR1288045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARFTR-09A-01R.exon.quantification.txt	3			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFTR-09A-01R	RNA	EFO	SRS602089	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFTR-09A-01R A32615 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32615	SRX543434	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARFTR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARFTR-09A-01R A32615 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2240-1./A32615.fastq	SRR1797129	@dbgap@:reads/SRP011999/SRS602089/SRX543434/SRR1797129/SRR1797129.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_7_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288045	@dbgap@:reads/SRP011999/SRS602089/SRX543434/SRR1288045/SRR1288045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARFTR-09A-01R.gene.quantification.txt	3			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFTR-09A-01R	RNA	EFO	SRS602089	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFTR-09A-01R A32615 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32615	SRX543434	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARFTR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARFTR-09A-01R A32615 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2240-1./A32615.fastq	SRR1797129	@dbgap@:reads/SRP011999/SRS602089/SRX543434/SRR1797129/SRR1797129.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_7_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288045	@dbgap@:reads/SRP011999/SRS602089/SRX543434/SRR1288045/SRR1288045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARFTR-09A-01R.isoform.quantification.txt	3			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFTR-09A-01R	RNA	EFO	SRS602089	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFTR-09A-01R A32615 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32615	SRX543434	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARFTR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARFTR-09A-01R A32615 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2240-1./A32615.fastq	SRR1797129	@dbgap@:reads/SRP011999/SRS602089/SRX543434/SRR1797129/SRR1797129.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_7_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288045	@dbgap@:reads/SRP011999/SRS602089/SRX543434/SRR1288045/SRR1288045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARFTR-09A-01R.fusion.vcf	3			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFTR-09A-01R	RNA	EFO	SRS602089	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFTR-09A-01R A32615 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32615	SRX543434	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARFTR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARFTR-09A-01R A32615 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2240-1./A32615.fastq	SRR1797129	@dbgap@:reads/SRP011999/SRS602089/SRX543434/SRR1797129/SRR1797129.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_7_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288045	@dbgap@:reads/SRP011999/SRS602089/SRX543434/SRR1288045/SRR1288045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARFTR-09A-01R.indel.vcf	3			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFTR-09A-01R	RNA	EFO	SRS602089	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFTR-09A-01R A32615 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32615	SRX543434	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARFTR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARFTR-09A-01R A32615 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2240-1./A32615.fastq	SRR1797129	@dbgap@:reads/SRP011999/SRS602089/SRX543434/SRR1797129/SRR1797129.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_7_CTAGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288045	@dbgap@:reads/SRP011999/SRS602089/SRX543434/SRR1288045/SRR1288045.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARFTR-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARFXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFXJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARFXJ-09A-01R	RNA	EFO	SRS1284182	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARFXJ-09A-01R SJALL015243_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	38.8	SJALL015243_D1_RNASEQ_1	SRX1571369		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARFXJ-09A-01R SJALL015243_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARFXJ-09A-01R.fastq	SRR3162136	@dbgap@:reads/SRP011999/SRS1284182/SRX1571369/SRR3162136/SRR3162136.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARFXJ-09A-01R.expression.txt	3			
TARGET-10-PARFXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFXJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARFXJ-09A-01R	RNA	EFO	SRS1284182	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARFXJ-09A-01R SJALL015243_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	38.8	SJALL015243_D1_RNASEQ_1	SRX1571369		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARFXJ-09A-01R SJALL015243_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARFXJ-09A-01R.fastq	SRR3162136	@dbgap@:reads/SRP011999/SRS1284182/SRX1571369/SRR3162136/SRR3162136.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARGFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARGFL-09A-01R	RNA	EFO	SRS1284446	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARGFL-09A-01R SJALL015256_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	39	SJALL015256_D1_RNASEQ_1	SRX1571370		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARGFL-09A-01R SJALL015256_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARGFL-09A-01R.fastq	SRR3162137	@dbgap@:reads/SRP011999/SRS1284446/SRX1571370/SRR3162137/SRR3162137.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARGFL-09A-01R.expression.txt	3			
TARGET-10-PARGFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARGFL-09A-01R	RNA	EFO	SRS1284446	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARGFL-09A-01R SJALL015256_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	39	SJALL015256_D1_RNASEQ_1	SRX1571370		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARGFL-09A-01R SJALL015256_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARGFL-09A-01R.fastq	SRR3162137	@dbgap@:reads/SRP011999/SRS1284446/SRX1571370/SRR3162137/SRR3162137.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGFV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGFV-04A-01R	RNA	EFO	SRS602079	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGFV-04A-01R A32680 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32680	SRX543391	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARGFV-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARGFV-04A-01R A32680 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2236-1./A32680.fastq	SRR1791064	@dbgap@:reads/SRP011999/SRS602079/SRX543391/SRR1791064/SRR1791064.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_3_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288079	@dbgap@:reads/SRP011999/SRS602079/SRX543391/SRR1288079/SRR1288079.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARGFV-04A-01R.exon.quantification.txt	3			
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGFV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGFV-04A-01R	RNA	EFO	SRS602079	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGFV-04A-01R A32680 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32680	SRX543391	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARGFV-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARGFV-04A-01R A32680 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2236-1./A32680.fastq	SRR1791064	@dbgap@:reads/SRP011999/SRS602079/SRX543391/SRR1791064/SRR1791064.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_3_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288079	@dbgap@:reads/SRP011999/SRS602079/SRX543391/SRR1288079/SRR1288079.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARGFV-04A-01R.gene.quantification.txt	3			
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGFV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGFV-04A-01R	RNA	EFO	SRS602079	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGFV-04A-01R A32680 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32680	SRX543391	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARGFV-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARGFV-04A-01R A32680 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2236-1./A32680.fastq	SRR1791064	@dbgap@:reads/SRP011999/SRS602079/SRX543391/SRR1791064/SRR1791064.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_3_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288079	@dbgap@:reads/SRP011999/SRS602079/SRX543391/SRR1288079/SRR1288079.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARGFV-04A-01R.isoform.quantification.txt	3			
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGFV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGFV-04A-01R	RNA	EFO	SRS602079	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGFV-04A-01R A32680 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32680	SRX543391	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARGFV-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARGFV-04A-01R A32680 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2236-1./A32680.fastq	SRR1791064	@dbgap@:reads/SRP011999/SRS602079/SRX543391/SRR1791064/SRR1791064.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_3_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288079	@dbgap@:reads/SRP011999/SRS602079/SRX543391/SRR1288079/SRR1288079.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARGFV-04A-01R.fusion.vcf	3			
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGFV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGFV-04A-01R	RNA	EFO	SRS602079	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGFV-04A-01R A32680 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32680	SRX543391	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARGFV-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARGFV-04A-01R A32680 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2236-1./A32680.fastq	SRR1791064	@dbgap@:reads/SRP011999/SRS602079/SRX543391/SRR1791064/SRR1791064.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_3_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288079	@dbgap@:reads/SRP011999/SRS602079/SRX543391/SRR1288079/SRR1288079.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARGFV-04A-01R.indel.vcf	3			
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGFV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGFV-04A-01R	RNA	EFO	SRS602079	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGFV-04A-01R A32680 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32680	SRX543391	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARGFV-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARGFV-04A-01R A32680 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2236-1./A32680.fastq	SRR1791064	@dbgap@:reads/SRP011999/SRS602079/SRX543391/SRR1791064/SRR1791064.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_3_ATGAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288079	@dbgap@:reads/SRP011999/SRS602079/SRX543391/SRR1288079/SRR1288079.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARGFV-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGHW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGHW-04A-01R	RNA	EFO	SRS602038	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGHW-04A-01R A32616 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32616	SRX543424	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARGHW-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARGHW-04A-01R A32616 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2233-1./A32616.fastq	SRR1791107	@dbgap@:reads/SRP011999/SRS602038/SRX543424/SRR1791107/SRR1791107.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed bases < 5Gb, genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_6_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288015	@dbgap@:reads/SRP011999/SRS602038/SRX543424/SRR1288015/SRR1288015.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARGHW-04A-01R.exon.quantification.txt	3			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGHW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGHW-04A-01R	RNA	EFO	SRS602038	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGHW-04A-01R A32616 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32616	SRX543424	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARGHW-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARGHW-04A-01R A32616 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2233-1./A32616.fastq	SRR1791107	@dbgap@:reads/SRP011999/SRS602038/SRX543424/SRR1791107/SRR1791107.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed bases < 5Gb, genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_6_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288015	@dbgap@:reads/SRP011999/SRS602038/SRX543424/SRR1288015/SRR1288015.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARGHW-04A-01R.gene.quantification.txt	3			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGHW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGHW-04A-01R	RNA	EFO	SRS602038	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGHW-04A-01R A32616 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32616	SRX543424	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARGHW-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARGHW-04A-01R A32616 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2233-1./A32616.fastq	SRR1791107	@dbgap@:reads/SRP011999/SRS602038/SRX543424/SRR1791107/SRR1791107.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed bases < 5Gb, genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_6_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288015	@dbgap@:reads/SRP011999/SRS602038/SRX543424/SRR1288015/SRR1288015.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARGHW-04A-01R.isoform.quantification.txt	3			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGHW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGHW-04A-01R	RNA	EFO	SRS602038	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGHW-04A-01R A32616 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32616	SRX543424	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARGHW-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARGHW-04A-01R A32616 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2233-1./A32616.fastq	SRR1791107	@dbgap@:reads/SRP011999/SRS602038/SRX543424/SRR1791107/SRR1791107.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed bases < 5Gb, genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_6_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288015	@dbgap@:reads/SRP011999/SRS602038/SRX543424/SRR1288015/SRR1288015.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARGHW-04A-01R.fusion.vcf	3			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGHW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGHW-04A-01R	RNA	EFO	SRS602038	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGHW-04A-01R A32616 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32616	SRX543424	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARGHW-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARGHW-04A-01R A32616 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2233-1./A32616.fastq	SRR1791107	@dbgap@:reads/SRP011999/SRS602038/SRX543424/SRR1791107/SRR1791107.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed bases < 5Gb, genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_6_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288015	@dbgap@:reads/SRP011999/SRS602038/SRX543424/SRR1288015/SRR1288015.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARGHW-04A-01R.indel.vcf	3			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGHW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGHW-04A-01R	RNA	EFO	SRS602038	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGHW-04A-01R A32616 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32616	SRX543424	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARGHW-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARGHW-04A-01R A32616 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2233-1./A32616.fastq	SRR1791107	@dbgap@:reads/SRP011999/SRS602038/SRX543424/SRR1791107/SRR1791107.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed bases < 5Gb, genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_6_GATGCT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288015	@dbgap@:reads/SRP011999/SRS602038/SRX543424/SRR1288015/SRR1288015.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARGHW-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGML-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGML-03A-02R	RNA	EFO	SRS602229	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGML-03A-02R A33610 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33610	SRX547656	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARGML-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARGML-03A-02R A33610 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2194-1./A33610.fastq	SRR1791072	@dbgap@:reads/SRP011999/SRS602229/SRX547656/SRR1791072/SRR1791072.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_2_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293049	@dbgap@:reads/SRP011999/SRS602229/SRX547656/SRR1293049/SRR1293049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARGML-03A-02R.exon.quantification.txt	3			
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGML-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGML-03A-02R	RNA	EFO	SRS602229	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGML-03A-02R A33610 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33610	SRX547656	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARGML-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARGML-03A-02R A33610 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2194-1./A33610.fastq	SRR1791072	@dbgap@:reads/SRP011999/SRS602229/SRX547656/SRR1791072/SRR1791072.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_2_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293049	@dbgap@:reads/SRP011999/SRS602229/SRX547656/SRR1293049/SRR1293049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARGML-03A-02R.gene.quantification.txt	3			
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGML-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGML-03A-02R	RNA	EFO	SRS602229	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGML-03A-02R A33610 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33610	SRX547656	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARGML-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARGML-03A-02R A33610 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2194-1./A33610.fastq	SRR1791072	@dbgap@:reads/SRP011999/SRS602229/SRX547656/SRR1791072/SRR1791072.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_2_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293049	@dbgap@:reads/SRP011999/SRS602229/SRX547656/SRR1293049/SRR1293049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARGML-03A-02R.isoform.quantification.txt	3			
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGML-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGML-03A-02R	RNA	EFO	SRS602229	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGML-03A-02R A33610 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33610	SRX547656	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARGML-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARGML-03A-02R A33610 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2194-1./A33610.fastq	SRR1791072	@dbgap@:reads/SRP011999/SRS602229/SRX547656/SRR1791072/SRR1791072.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_2_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293049	@dbgap@:reads/SRP011999/SRS602229/SRX547656/SRR1293049/SRR1293049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARGML-03A-02R.fusion.vcf	3			
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGML-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGML-03A-02R	RNA	EFO	SRS602229	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGML-03A-02R A33610 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33610	SRX547656	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARGML-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARGML-03A-02R A33610 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2194-1./A33610.fastq	SRR1791072	@dbgap@:reads/SRP011999/SRS602229/SRX547656/SRR1791072/SRR1791072.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_2_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293049	@dbgap@:reads/SRP011999/SRS602229/SRX547656/SRR1293049/SRR1293049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARGML-03A-02R.indel.vcf	3			
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGML-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGML-03A-02R	RNA	EFO	SRS602229	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGML-03A-02R A33610 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33610	SRX547656	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARGML-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARGML-03A-02R A33610 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2194-1./A33610.fastq	SRR1791072	@dbgap@:reads/SRP011999/SRS602229/SRX547656/SRR1791072/SRR1791072.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_2_CCCATG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293049	@dbgap@:reads/SRP011999/SRS602229/SRX547656/SRR1293049/SRR1293049.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARGML-03A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGVZ-04A-01R	RNA	EFO	SRS602046	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGVZ-04A-01R A32623 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32623	SRX543440	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARGVZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARGVZ-04A-01R A32623 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2245-1./A32623.fastq	SRR1797099	@dbgap@:reads/SRP011999/SRS602046/SRX543440/SRR1797099/SRR1797099.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_4_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288076	@dbgap@:reads/SRP011999/SRS602046/SRX543440/SRR1288076/SRR1288076.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARGVZ-04A-01R.exon.quantification.txt	3			
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGVZ-04A-01R	RNA	EFO	SRS602046	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGVZ-04A-01R A32623 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32623	SRX543440	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARGVZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARGVZ-04A-01R A32623 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2245-1./A32623.fastq	SRR1797099	@dbgap@:reads/SRP011999/SRS602046/SRX543440/SRR1797099/SRR1797099.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_4_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288076	@dbgap@:reads/SRP011999/SRS602046/SRX543440/SRR1288076/SRR1288076.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARGVZ-04A-01R.gene.quantification.txt	3			
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGVZ-04A-01R	RNA	EFO	SRS602046	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGVZ-04A-01R A32623 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32623	SRX543440	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARGVZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARGVZ-04A-01R A32623 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2245-1./A32623.fastq	SRR1797099	@dbgap@:reads/SRP011999/SRS602046/SRX543440/SRR1797099/SRR1797099.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_4_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288076	@dbgap@:reads/SRP011999/SRS602046/SRX543440/SRR1288076/SRR1288076.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARGVZ-04A-01R.isoform.quantification.txt	3			
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGVZ-04A-01R	RNA	EFO	SRS602046	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGVZ-04A-01R A32623 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32623	SRX543440	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARGVZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARGVZ-04A-01R A32623 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2245-1./A32623.fastq	SRR1797099	@dbgap@:reads/SRP011999/SRS602046/SRX543440/SRR1797099/SRR1797099.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_4_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288076	@dbgap@:reads/SRP011999/SRS602046/SRX543440/SRR1288076/SRR1288076.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARGVZ-04A-01R.fusion.vcf	3			
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGVZ-04A-01R	RNA	EFO	SRS602046	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGVZ-04A-01R A32623 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32623	SRX543440	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARGVZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARGVZ-04A-01R A32623 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2245-1./A32623.fastq	SRR1797099	@dbgap@:reads/SRP011999/SRS602046/SRX543440/SRR1797099/SRR1797099.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_4_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288076	@dbgap@:reads/SRP011999/SRS602046/SRX543440/SRR1288076/SRR1288076.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARGVZ-04A-01R.indel.vcf	3			
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGVZ-04A-01R	RNA	EFO	SRS602046	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARGVZ-04A-01R A32623 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32623	SRX543440	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARGVZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARGVZ-04A-01R A32623 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2245-1./A32623.fastq	SRR1797099	@dbgap@:reads/SRP011999/SRS602046/SRX543440/SRR1797099/SRR1797099.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_4_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288076	@dbgap@:reads/SRP011999/SRS602046/SRX543440/SRR1288076/SRR1288076.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARGVZ-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARHBI-09A-01R	RNA	EFO	SRS1284445	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARHBI-09A-01R SJTALL022433_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	35.8	SJTALL022433_D2_RNASEQ_1	SRX1571371		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARHBI-09A-01R SJTALL022433_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARHBI-09A-01R.fastq	SRR3162138	@dbgap@:reads/SRP011999/SRS1284445/SRX1571371/SRR3162138/SRR3162138.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARHBI-09A-01R.expression.txt	3			
TARGET-10-PARHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARHBI-09A-01R	RNA	EFO	SRS1284445	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARHBI-09A-01R SJTALL022433_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	35.8	SJTALL022433_D2_RNASEQ_1	SRX1571371		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARHBI-09A-01R SJTALL022433_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARHBI-09A-01R.fastq	SRR3162138	@dbgap@:reads/SRP011999/SRS1284445/SRX1571371/SRR3162138/SRR3162138.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARHBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARHBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARHBT-09A-01R	RNA	EFO	SRS1284444	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARHBT-09A-01R SJTALL021648_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	152	33.5	SJTALL021648_D2_RNASEQ_1	SRX1571372		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARHBT-09A-01R SJTALL021648_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARHBT-09A-01R.fastq	SRR3162139	@dbgap@:reads/SRP011999/SRS1284444/SRX1571372/SRR3162139/SRR3162139.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARHBT-09A-01R.expression.txt	3			
TARGET-10-PARHBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARHBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARHBT-09A-01R	RNA	EFO	SRS1284444	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARHBT-09A-01R SJTALL021648_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	152	33.5	SJTALL021648_D2_RNASEQ_1	SRX1571372		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARHBT-09A-01R SJTALL021648_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARHBT-09A-01R.fastq	SRR3162139	@dbgap@:reads/SRP011999/SRS1284444/SRX1571372/SRR3162139/SRR3162139.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARHES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARHES-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARHES-09A-01R	RNA	EFO	SRS1284443	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARHES-09A-01R SJALL015257_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	159	34.5	SJALL015257_D1_RNASEQ_1	SRX1571373		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARHES-09A-01R SJALL015257_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARHES-09A-01R.fastq	SRR3162140	@dbgap@:reads/SRP011999/SRS1284443/SRX1571373/SRR3162140/SRR3162140.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARHES-09A-01R.expression.txt	3			
TARGET-10-PARHES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARHES-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARHES-09A-01R	RNA	EFO	SRS1284443	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARHES-09A-01R SJALL015257_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	159	34.5	SJALL015257_D1_RNASEQ_1	SRX1571373		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARHES-09A-01R SJALL015257_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARHES-09A-01R.fastq	SRR3162140	@dbgap@:reads/SRP011999/SRS1284443/SRX1571373/SRR3162140/SRR3162140.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARIAD-03A-01R	RNA	EFO	SRS602086	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARIAD-03A-01R A32624 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32624	SRX543464	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARIAD-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARIAD-03A-01R A32624 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2250-1./A32624.fastq	SRR1797095	@dbgap@:reads/SRP011999/SRS602086/SRX543464/SRR1797095/SRR1797095.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_1_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288012	@dbgap@:reads/SRP011999/SRS602086/SRX543464/SRR1288012/SRR1288012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARIAD-03A-01R.exon.quantification.txt	3			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARIAD-03A-01R	RNA	EFO	SRS602086	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARIAD-03A-01R A32624 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32624	SRX543464	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARIAD-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARIAD-03A-01R A32624 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2250-1./A32624.fastq	SRR1797095	@dbgap@:reads/SRP011999/SRS602086/SRX543464/SRR1797095/SRR1797095.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_1_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288012	@dbgap@:reads/SRP011999/SRS602086/SRX543464/SRR1288012/SRR1288012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARIAD-03A-01R.gene.quantification.txt	3			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARIAD-03A-01R	RNA	EFO	SRS602086	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARIAD-03A-01R A32624 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32624	SRX543464	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARIAD-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARIAD-03A-01R A32624 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2250-1./A32624.fastq	SRR1797095	@dbgap@:reads/SRP011999/SRS602086/SRX543464/SRR1797095/SRR1797095.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_1_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288012	@dbgap@:reads/SRP011999/SRS602086/SRX543464/SRR1288012/SRR1288012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARIAD-03A-01R.isoform.quantification.txt	3			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARIAD-03A-01R	RNA	EFO	SRS602086	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARIAD-03A-01R A32624 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32624	SRX543464	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARIAD-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARIAD-03A-01R A32624 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2250-1./A32624.fastq	SRR1797095	@dbgap@:reads/SRP011999/SRS602086/SRX543464/SRR1797095/SRR1797095.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_1_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288012	@dbgap@:reads/SRP011999/SRS602086/SRX543464/SRR1288012/SRR1288012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARIAD-03A-01R.fusion.vcf	3			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARIAD-03A-01R	RNA	EFO	SRS602086	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARIAD-03A-01R A32624 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32624	SRX543464	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARIAD-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARIAD-03A-01R A32624 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2250-1./A32624.fastq	SRR1797095	@dbgap@:reads/SRP011999/SRS602086/SRX543464/SRR1797095/SRR1797095.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_1_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288012	@dbgap@:reads/SRP011999/SRS602086/SRX543464/SRR1288012/SRR1288012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARIAD-03A-01R.indel.vcf	3			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARIAD-03A-01R	RNA	EFO	SRS602086	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARIAD-03A-01R A32624 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32624	SRX543464	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARIAD-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARIAD-03A-01R A32624 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2250-1./A32624.fastq	SRR1797095	@dbgap@:reads/SRP011999/SRS602086/SRX543464/SRR1797095/SRR1797095.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_1_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288012	@dbgap@:reads/SRP011999/SRS602086/SRX543464/SRR1288012/SRR1288012.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARIAD-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARIAD-04A-01R	RNA	EFO	SRS602055	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARIAD-04A-01R A32625 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32625	SRX543445	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARIAD-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARIAD-04A-01R A32625 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2244-1./A32625.fastq	SRR1797083	@dbgap@:reads/SRP011999/SRS602055/SRX543445/SRR1797083/SRR1797083.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_3_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288030	@dbgap@:reads/SRP011999/SRS602055/SRX543445/SRR1288030/SRR1288030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARIAD-04A-01R.exon.quantification.txt	3			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARIAD-04A-01R	RNA	EFO	SRS602055	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARIAD-04A-01R A32625 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32625	SRX543445	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARIAD-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARIAD-04A-01R A32625 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2244-1./A32625.fastq	SRR1797083	@dbgap@:reads/SRP011999/SRS602055/SRX543445/SRR1797083/SRR1797083.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_3_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288030	@dbgap@:reads/SRP011999/SRS602055/SRX543445/SRR1288030/SRR1288030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARIAD-04A-01R.gene.quantification.txt	3			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARIAD-04A-01R	RNA	EFO	SRS602055	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARIAD-04A-01R A32625 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32625	SRX543445	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARIAD-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARIAD-04A-01R A32625 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2244-1./A32625.fastq	SRR1797083	@dbgap@:reads/SRP011999/SRS602055/SRX543445/SRR1797083/SRR1797083.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_3_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288030	@dbgap@:reads/SRP011999/SRS602055/SRX543445/SRR1288030/SRR1288030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARIAD-04A-01R.isoform.quantification.txt	3			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARIAD-04A-01R	RNA	EFO	SRS602055	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARIAD-04A-01R A32625 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32625	SRX543445	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARIAD-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARIAD-04A-01R A32625 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2244-1./A32625.fastq	SRR1797083	@dbgap@:reads/SRP011999/SRS602055/SRX543445/SRR1797083/SRR1797083.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_3_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288030	@dbgap@:reads/SRP011999/SRS602055/SRX543445/SRR1288030/SRR1288030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARIAD-04A-01R.fusion.vcf	3			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARIAD-04A-01R	RNA	EFO	SRS602055	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARIAD-04A-01R A32625 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32625	SRX543445	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARIAD-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARIAD-04A-01R A32625 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2244-1./A32625.fastq	SRR1797083	@dbgap@:reads/SRP011999/SRS602055/SRX543445/SRR1797083/SRR1797083.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_3_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288030	@dbgap@:reads/SRP011999/SRS602055/SRX543445/SRR1288030/SRR1288030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARIAD-04A-01R.indel.vcf	3			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARIAD-04A-01R	RNA	EFO	SRS602055	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARIAD-04A-01R A32625 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32625	SRX543445	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARIAD-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARIAD-04A-01R A32625 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2244-1./A32625.fastq	SRR1797083	@dbgap@:reads/SRP011999/SRS602055/SRX543445/SRR1797083/SRR1797083.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_3_CAACTA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288030	@dbgap@:reads/SRP011999/SRS602055/SRX543445/SRR1288030/SRR1288030.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARIAD-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARIYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARIYD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARIYD-09A-01R	RNA	EFO	SRS1284442	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARIYD-09A-01R SJALL015258_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	39.6	SJALL015258_D1_RNASEQ_1	SRX1571374		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARIYD-09A-01R SJALL015258_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARIYD-09A-01R.fastq	SRR3162141	@dbgap@:reads/SRP011999/SRS1284442/SRX1571374/SRR3162141/SRR3162141.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARIYD-09A-01R.expression.txt	3			
TARGET-10-PARIYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARIYD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARIYD-09A-01R	RNA	EFO	SRS1284442	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARIYD-09A-01R SJALL015258_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	39.6	SJALL015258_D1_RNASEQ_1	SRX1571374		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARIYD-09A-01R SJALL015258_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARIYD-09A-01R.fastq	SRR3162141	@dbgap@:reads/SRP011999/SRS1284442/SRX1571374/SRR3162141/SRR3162141.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARIZN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARIZN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARIZN-09A-01R	RNA	EFO	SRS1284441	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARIZN-09A-01R SJALL015259_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	37.9	SJALL015259_D1_RNASEQ_1	SRX1571375		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARIZN-09A-01R SJALL015259_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARIZN-09A-01R.fastq	SRR3162142	@dbgap@:reads/SRP011999/SRS1284441/SRX1571375/SRR3162142/SRR3162142.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARIZN-09A-01R.expression.txt	3			
TARGET-10-PARIZN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARIZN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARIZN-09A-01R	RNA	EFO	SRS1284441	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARIZN-09A-01R SJALL015259_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	37.9	SJALL015259_D1_RNASEQ_1	SRX1571375		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARIZN-09A-01R SJALL015259_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARIZN-09A-01R.fastq	SRR3162142	@dbgap@:reads/SRP011999/SRS1284441/SRX1571375/SRR3162142/SRR3162142.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARJAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJAY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARJAY-09A-01R	RNA	EFO	SRS1284440	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARJAY-09A-01R SJALL015270_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	35.6	SJALL015270_D1_RNASEQ_1	SRX1571376		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARJAY-09A-01R SJALL015270_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARJAY-09A-01R.fastq	SRR3162143	@dbgap@:reads/SRP011999/SRS1284440/SRX1571376/SRR3162143/SRR3162143.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARJAY-09A-01R.expression.txt	3			
TARGET-10-PARJAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJAY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARJAY-09A-01R	RNA	EFO	SRS1284440	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARJAY-09A-01R SJALL015270_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	35.6	SJALL015270_D1_RNASEQ_1	SRX1571376		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARJAY-09A-01R SJALL015270_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARJAY-09A-01R.fastq	SRR3162143	@dbgap@:reads/SRP011999/SRS1284440/SRX1571376/SRR3162143/SRR3162143.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARJNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARJNX-09A-01R	RNA	EFO	SRS1284439	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARJNX-09A-01R SJALL015271_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	37.8	SJALL015271_D1_RNASEQ_1	SRX1571377		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARJNX-09A-01R SJALL015271_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARJNX-09A-01R.fastq	SRR3162144	@dbgap@:reads/SRP011999/SRS1284439/SRX1571377/SRR3162144/SRR3162144.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARJNX-09A-01R.expression.txt	3			
TARGET-10-PARJNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARJNX-09A-01R	RNA	EFO	SRS1284439	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARJNX-09A-01R SJALL015271_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	37.8	SJALL015271_D1_RNASEQ_1	SRX1571377		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARJNX-09A-01R SJALL015271_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARJNX-09A-01R.fastq	SRR3162144	@dbgap@:reads/SRP011999/SRS1284439/SRX1571377/SRR3162144/SRR3162144.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARJPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJPL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARJPL-09A-01R	RNA	EFO	SRS1284438	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARJPL-09A-01R SJALL015278_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	174	41	SJALL015278_D1_RNASEQ_1	SRX1571378		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARJPL-09A-01R SJALL015278_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARJPL-09A-01R.fastq	SRR3162145	@dbgap@:reads/SRP011999/SRS1284438/SRX1571378/SRR3162145/SRR3162145.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARJPL-09A-01R.expression.txt	3			
TARGET-10-PARJPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJPL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARJPL-09A-01R	RNA	EFO	SRS1284438	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARJPL-09A-01R SJALL015278_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	174	41	SJALL015278_D1_RNASEQ_1	SRX1571378		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARJPL-09A-01R SJALL015278_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARJPL-09A-01R.fastq	SRR3162145	@dbgap@:reads/SRP011999/SRS1284438/SRX1571378/SRR3162145/SRR3162145.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJSR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJSR-04A-02R	RNA	EFO	SRS602218	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJSR-04A-02R A33603 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33603	SRX547652	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARJSR-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARJSR-04A-02R A33603 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2187-1./A33603.fastq	SRR1797093	@dbgap@:reads/SRP011999/SRS602218/SRX547652/SRR1797093/SRR1797093.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_3_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293053	@dbgap@:reads/SRP011999/SRS602218/SRX547652/SRR1293053/SRR1293053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARJSR-04A-02R.exon.quantification.txt	3			
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJSR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJSR-04A-02R	RNA	EFO	SRS602218	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJSR-04A-02R A33603 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33603	SRX547652	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARJSR-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARJSR-04A-02R A33603 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2187-1./A33603.fastq	SRR1797093	@dbgap@:reads/SRP011999/SRS602218/SRX547652/SRR1797093/SRR1797093.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_3_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293053	@dbgap@:reads/SRP011999/SRS602218/SRX547652/SRR1293053/SRR1293053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARJSR-04A-02R.gene.quantification.txt	3			
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJSR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJSR-04A-02R	RNA	EFO	SRS602218	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJSR-04A-02R A33603 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33603	SRX547652	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARJSR-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARJSR-04A-02R A33603 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2187-1./A33603.fastq	SRR1797093	@dbgap@:reads/SRP011999/SRS602218/SRX547652/SRR1797093/SRR1797093.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_3_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293053	@dbgap@:reads/SRP011999/SRS602218/SRX547652/SRR1293053/SRR1293053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARJSR-04A-02R.isoform.quantification.txt	3			
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJSR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJSR-04A-02R	RNA	EFO	SRS602218	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJSR-04A-02R A33603 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33603	SRX547652	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARJSR-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARJSR-04A-02R A33603 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2187-1./A33603.fastq	SRR1797093	@dbgap@:reads/SRP011999/SRS602218/SRX547652/SRR1797093/SRR1797093.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_3_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293053	@dbgap@:reads/SRP011999/SRS602218/SRX547652/SRR1293053/SRR1293053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARJSR-04A-02R.fusion.vcf	3			
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJSR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJSR-04A-02R	RNA	EFO	SRS602218	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJSR-04A-02R A33603 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33603	SRX547652	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARJSR-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARJSR-04A-02R A33603 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2187-1./A33603.fastq	SRR1797093	@dbgap@:reads/SRP011999/SRS602218/SRX547652/SRR1797093/SRR1797093.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_3_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293053	@dbgap@:reads/SRP011999/SRS602218/SRX547652/SRR1293053/SRR1293053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARJSR-04A-02R.indel.vcf	3			
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJSR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJSR-04A-02R	RNA	EFO	SRS602218	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJSR-04A-02R A33603 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33603	SRX547652	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARJSR-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARJSR-04A-02R A33603 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2187-1./A33603.fastq	SRR1797093	@dbgap@:reads/SRP011999/SRS602218/SRX547652/SRR1797093/SRR1797093.sra	1	"HIGH MITOCHONDRIAL CONTENT (mitochondrial reads > 30%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_3_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293053	@dbgap@:reads/SRP011999/SRS602218/SRX547652/SRR1293053/SRR1293053.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARJSR-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJSR-09A-01R	RNA	EFO	SRS602044	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJSR-09A-01R A32628 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32628	SRX543398	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARJSR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARJSR-09A-01R A32628 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2220-1./A32628.fastq	SRR1791078	@dbgap@:reads/SRP011999/SRS602044/SRX543398/SRR1791078/SRR1791078.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_8_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288080	@dbgap@:reads/SRP011999/SRS602044/SRX543398/SRR1288080/SRR1288080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARJSR-09A-01R.exon.quantification.txt	3			
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJSR-09A-01R	RNA	EFO	SRS602044	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJSR-09A-01R A32628 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32628	SRX543398	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARJSR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARJSR-09A-01R A32628 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2220-1./A32628.fastq	SRR1791078	@dbgap@:reads/SRP011999/SRS602044/SRX543398/SRR1791078/SRR1791078.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_8_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288080	@dbgap@:reads/SRP011999/SRS602044/SRX543398/SRR1288080/SRR1288080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARJSR-09A-01R.gene.quantification.txt	3			
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJSR-09A-01R	RNA	EFO	SRS602044	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJSR-09A-01R A32628 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32628	SRX543398	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARJSR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARJSR-09A-01R A32628 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2220-1./A32628.fastq	SRR1791078	@dbgap@:reads/SRP011999/SRS602044/SRX543398/SRR1791078/SRR1791078.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_8_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288080	@dbgap@:reads/SRP011999/SRS602044/SRX543398/SRR1288080/SRR1288080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARJSR-09A-01R.isoform.quantification.txt	3			
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJSR-09A-01R	RNA	EFO	SRS602044	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJSR-09A-01R A32628 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32628	SRX543398	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARJSR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARJSR-09A-01R A32628 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2220-1./A32628.fastq	SRR1791078	@dbgap@:reads/SRP011999/SRS602044/SRX543398/SRR1791078/SRR1791078.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_8_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288080	@dbgap@:reads/SRP011999/SRS602044/SRX543398/SRR1288080/SRR1288080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARJSR-09A-01R.fusion.vcf	3			
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJSR-09A-01R	RNA	EFO	SRS602044	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJSR-09A-01R A32628 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32628	SRX543398	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARJSR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARJSR-09A-01R A32628 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2220-1./A32628.fastq	SRR1791078	@dbgap@:reads/SRP011999/SRS602044/SRX543398/SRR1791078/SRR1791078.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_8_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288080	@dbgap@:reads/SRP011999/SRS602044/SRX543398/SRR1288080/SRR1288080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARJSR-09A-01R.indel.vcf	3			
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJSR-09A-01R	RNA	EFO	SRS602044	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJSR-09A-01R A32628 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32628	SRX543398	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARJSR-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARJSR-09A-01R A32628 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2220-1./A32628.fastq	SRR1791078	@dbgap@:reads/SRP011999/SRS602044/SRX543398/SRR1791078/SRR1791078.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BWACXX_8_GCAAGG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288080	@dbgap@:reads/SRP011999/SRS602044/SRX543398/SRR1288080/SRR1288080.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARJSR-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARJXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJXW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARJXW-09A-01R	RNA	EFO	SRS1284437	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARJXW-09A-01R SJALL015279_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	38.3	SJALL015279_D1_RNASEQ_1	SRX1571379		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARJXW-09A-01R SJALL015279_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARJXW-09A-01R.fastq	SRR3162146	@dbgap@:reads/SRP011999/SRS1284437/SRX1571379/SRR3162146/SRR3162146.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARJXW-09A-01R.expression.txt	3			
TARGET-10-PARJXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJXW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARJXW-09A-01R	RNA	EFO	SRS1284437	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARJXW-09A-01R SJALL015279_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	38.3	SJALL015279_D1_RNASEQ_1	SRX1571379		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARJXW-09A-01R SJALL015279_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARJXW-09A-01R.fastq	SRR3162146	@dbgap@:reads/SRP011999/SRS1284437/SRX1571379/SRR3162146/SRR3162146.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJZZ-04A-01R	RNA	EFO	SRS602053	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJZZ-04A-01R A32681 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32681	SRX543470	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARJZZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARJZZ-04A-01R A32681 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2243-1./A32681.fastq	SRR1797075	@dbgap@:reads/SRP011999/SRS602053/SRX543470/SRR1797075/SRR1797075.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_2_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288010	@dbgap@:reads/SRP011999/SRS602053/SRX543470/SRR1288010/SRR1288010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARJZZ-04A-01R.exon.quantification.txt	3			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJZZ-04A-01R	RNA	EFO	SRS602053	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJZZ-04A-01R A32681 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32681	SRX543470	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARJZZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARJZZ-04A-01R A32681 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2243-1./A32681.fastq	SRR1797075	@dbgap@:reads/SRP011999/SRS602053/SRX543470/SRR1797075/SRR1797075.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_2_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288010	@dbgap@:reads/SRP011999/SRS602053/SRX543470/SRR1288010/SRR1288010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARJZZ-04A-01R.gene.quantification.txt	3			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJZZ-04A-01R	RNA	EFO	SRS602053	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJZZ-04A-01R A32681 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32681	SRX543470	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARJZZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARJZZ-04A-01R A32681 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2243-1./A32681.fastq	SRR1797075	@dbgap@:reads/SRP011999/SRS602053/SRX543470/SRR1797075/SRR1797075.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_2_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288010	@dbgap@:reads/SRP011999/SRS602053/SRX543470/SRR1288010/SRR1288010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARJZZ-04A-01R.isoform.quantification.txt	3			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJZZ-04A-01R	RNA	EFO	SRS602053	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJZZ-04A-01R A32681 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32681	SRX543470	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARJZZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARJZZ-04A-01R A32681 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2243-1./A32681.fastq	SRR1797075	@dbgap@:reads/SRP011999/SRS602053/SRX543470/SRR1797075/SRR1797075.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_2_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288010	@dbgap@:reads/SRP011999/SRS602053/SRX543470/SRR1288010/SRR1288010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARJZZ-04A-01R.fusion.vcf	3			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJZZ-04A-01R	RNA	EFO	SRS602053	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJZZ-04A-01R A32681 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32681	SRX543470	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARJZZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARJZZ-04A-01R A32681 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2243-1./A32681.fastq	SRR1797075	@dbgap@:reads/SRP011999/SRS602053/SRX543470/SRR1797075/SRR1797075.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_2_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288010	@dbgap@:reads/SRP011999/SRS602053/SRX543470/SRR1288010/SRR1288010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARJZZ-04A-01R.indel.vcf	3			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJZZ-04A-01R	RNA	EFO	SRS602053	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJZZ-04A-01R A32681 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32681	SRX543470	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARJZZ-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARJZZ-04A-01R A32681 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2243-1./A32681.fastq	SRR1797075	@dbgap@:reads/SRP011999/SRS602053/SRX543470/SRR1797075/SRR1797075.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_2_CATGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288010	@dbgap@:reads/SRP011999/SRS602053/SRX543470/SRR1288010/SRR1288010.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARJZZ-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJZZ-09A-01R	RNA	EFO	SRS602048	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJZZ-09A-01R A32682 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32682	SRX543453	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARJZZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARJZZ-09A-01R A32682 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2240-1./A32682.fastq	SRR1797112	@dbgap@:reads/SRP011999/SRS602048/SRX543453/SRR1797112/SRR1797112.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_7_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288075	@dbgap@:reads/SRP011999/SRS602048/SRX543453/SRR1288075/SRR1288075.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARJZZ-09A-01R.exon.quantification.txt	3			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJZZ-09A-01R	RNA	EFO	SRS602048	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJZZ-09A-01R A32682 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32682	SRX543453	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARJZZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARJZZ-09A-01R A32682 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2240-1./A32682.fastq	SRR1797112	@dbgap@:reads/SRP011999/SRS602048/SRX543453/SRR1797112/SRR1797112.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_7_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288075	@dbgap@:reads/SRP011999/SRS602048/SRX543453/SRR1288075/SRR1288075.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARJZZ-09A-01R.gene.quantification.txt	3			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJZZ-09A-01R	RNA	EFO	SRS602048	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJZZ-09A-01R A32682 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32682	SRX543453	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARJZZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARJZZ-09A-01R A32682 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2240-1./A32682.fastq	SRR1797112	@dbgap@:reads/SRP011999/SRS602048/SRX543453/SRR1797112/SRR1797112.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_7_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288075	@dbgap@:reads/SRP011999/SRS602048/SRX543453/SRR1288075/SRR1288075.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARJZZ-09A-01R.isoform.quantification.txt	3			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJZZ-09A-01R	RNA	EFO	SRS602048	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJZZ-09A-01R A32682 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32682	SRX543453	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARJZZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARJZZ-09A-01R A32682 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2240-1./A32682.fastq	SRR1797112	@dbgap@:reads/SRP011999/SRS602048/SRX543453/SRR1797112/SRR1797112.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_7_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288075	@dbgap@:reads/SRP011999/SRS602048/SRX543453/SRR1288075/SRR1288075.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARJZZ-09A-01R.fusion.vcf	3			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJZZ-09A-01R	RNA	EFO	SRS602048	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJZZ-09A-01R A32682 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32682	SRX543453	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARJZZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARJZZ-09A-01R A32682 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2240-1./A32682.fastq	SRR1797112	@dbgap@:reads/SRP011999/SRS602048/SRX543453/SRR1797112/SRR1797112.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_7_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288075	@dbgap@:reads/SRP011999/SRS602048/SRX543453/SRR1288075/SRR1288075.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARJZZ-09A-01R.indel.vcf	3			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJZZ-09A-01R	RNA	EFO	SRS602048	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJZZ-09A-01R A32682 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32682	SRX543453	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARJZZ-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARJZZ-09A-01R A32682 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2240-1./A32682.fastq	SRR1797112	@dbgap@:reads/SRP011999/SRS602048/SRX543453/SRR1797112/SRR1797112.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_7_CGAGAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288075	@dbgap@:reads/SRP011999/SRS602048/SRX543453/SRR1288075/SRR1288075.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARJZZ-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARKLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARKLK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARKLK-09A-01R	RNA	EFO	SRS1284436	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARKLK-09A-01R SJALL015244_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	175	41	SJALL015244_D1_RNASEQ_1	SRX1571380		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARKLK-09A-01R SJALL015244_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARKLK-09A-01R.fastq	SRR3162147	@dbgap@:reads/SRP011999/SRS1284436/SRX1571380/SRR3162147/SRR3162147.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARKLK-09A-01R.expression.txt	3			
TARGET-10-PARKLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARKLK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARKLK-09A-01R	RNA	EFO	SRS1284436	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARKLK-09A-01R SJALL015244_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	175	41	SJALL015244_D1_RNASEQ_1	SRX1571380		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARKLK-09A-01R SJALL015244_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARKLK-09A-01R.fastq	SRR3162147	@dbgap@:reads/SRP011999/SRS1284436/SRX1571380/SRR3162147/SRR3162147.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARLAF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLAF-04A-01R	RNA	EFO	SRS602096	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLAF-04A-01R A32626 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32626	SRX543396	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARLAF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARLAF-04A-01R A32626 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2230-1./A32626.fastq	SRR1797103	@dbgap@:reads/SRP011999/SRS602096/SRX543396/SRR1797103/SRR1797103.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_3_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288025	@dbgap@:reads/SRP011999/SRS602096/SRX543396/SRR1288025/SRR1288025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARLAF-04A-01R.exon.quantification.txt	3			
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARLAF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLAF-04A-01R	RNA	EFO	SRS602096	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLAF-04A-01R A32626 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32626	SRX543396	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARLAF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARLAF-04A-01R A32626 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2230-1./A32626.fastq	SRR1797103	@dbgap@:reads/SRP011999/SRS602096/SRX543396/SRR1797103/SRR1797103.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_3_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288025	@dbgap@:reads/SRP011999/SRS602096/SRX543396/SRR1288025/SRR1288025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARLAF-04A-01R.gene.quantification.txt	3			
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARLAF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLAF-04A-01R	RNA	EFO	SRS602096	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLAF-04A-01R A32626 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32626	SRX543396	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARLAF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARLAF-04A-01R A32626 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2230-1./A32626.fastq	SRR1797103	@dbgap@:reads/SRP011999/SRS602096/SRX543396/SRR1797103/SRR1797103.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_3_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288025	@dbgap@:reads/SRP011999/SRS602096/SRX543396/SRR1288025/SRR1288025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARLAF-04A-01R.isoform.quantification.txt	3			
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARLAF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLAF-04A-01R	RNA	EFO	SRS602096	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLAF-04A-01R A32626 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32626	SRX543396	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARLAF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARLAF-04A-01R A32626 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2230-1./A32626.fastq	SRR1797103	@dbgap@:reads/SRP011999/SRS602096/SRX543396/SRR1797103/SRR1797103.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_3_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288025	@dbgap@:reads/SRP011999/SRS602096/SRX543396/SRR1288025/SRR1288025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARLAF-04A-01R.fusion.vcf	3			
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARLAF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLAF-04A-01R	RNA	EFO	SRS602096	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLAF-04A-01R A32626 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32626	SRX543396	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARLAF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARLAF-04A-01R A32626 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2230-1./A32626.fastq	SRR1797103	@dbgap@:reads/SRP011999/SRS602096/SRX543396/SRR1797103/SRR1797103.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_3_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288025	@dbgap@:reads/SRP011999/SRS602096/SRX543396/SRR1288025/SRR1288025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARLAF-04A-01R.indel.vcf	3			
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARLAF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLAF-04A-01R	RNA	EFO	SRS602096	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLAF-04A-01R A32626 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32626	SRX543396	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARLAF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARLAF-04A-01R A32626 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2230-1./A32626.fastq	SRR1797103	@dbgap@:reads/SRP011999/SRS602096/SRX543396/SRR1797103/SRR1797103.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_3_CCACGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288025	@dbgap@:reads/SRP011999/SRS602096/SRX543396/SRR1288025/SRR1288025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARLAF-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARLAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLAF-09A-01R	RNA	EFO	SRS602033	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLAF-09A-01R A32627 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32627	SRX543458	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARLAF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARLAF-09A-01R A32627 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2258-1./A32627.fastq	SRR1797127	@dbgap@:reads/SRP011999/SRS602033/SRX543458/SRR1797127/SRR1797127.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_1_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288005	@dbgap@:reads/SRP011999/SRS602033/SRX543458/SRR1288005/SRR1288005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARLAF-09A-01R.exon.quantification.txt	3			
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARLAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLAF-09A-01R	RNA	EFO	SRS602033	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLAF-09A-01R A32627 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32627	SRX543458	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARLAF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARLAF-09A-01R A32627 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2258-1./A32627.fastq	SRR1797127	@dbgap@:reads/SRP011999/SRS602033/SRX543458/SRR1797127/SRR1797127.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_1_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288005	@dbgap@:reads/SRP011999/SRS602033/SRX543458/SRR1288005/SRR1288005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARLAF-09A-01R.gene.quantification.txt	3			
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARLAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLAF-09A-01R	RNA	EFO	SRS602033	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLAF-09A-01R A32627 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32627	SRX543458	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARLAF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARLAF-09A-01R A32627 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2258-1./A32627.fastq	SRR1797127	@dbgap@:reads/SRP011999/SRS602033/SRX543458/SRR1797127/SRR1797127.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_1_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288005	@dbgap@:reads/SRP011999/SRS602033/SRX543458/SRR1288005/SRR1288005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARLAF-09A-01R.isoform.quantification.txt	3			
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARLAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLAF-09A-01R	RNA	EFO	SRS602033	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLAF-09A-01R A32627 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32627	SRX543458	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARLAF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARLAF-09A-01R A32627 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2258-1./A32627.fastq	SRR1797127	@dbgap@:reads/SRP011999/SRS602033/SRX543458/SRR1797127/SRR1797127.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_1_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288005	@dbgap@:reads/SRP011999/SRS602033/SRX543458/SRR1288005/SRR1288005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARLAF-09A-01R.fusion.vcf	3			
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARLAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLAF-09A-01R	RNA	EFO	SRS602033	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLAF-09A-01R A32627 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32627	SRX543458	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARLAF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARLAF-09A-01R A32627 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2258-1./A32627.fastq	SRR1797127	@dbgap@:reads/SRP011999/SRS602033/SRX543458/SRR1797127/SRR1797127.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_1_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288005	@dbgap@:reads/SRP011999/SRS602033/SRX543458/SRR1288005/SRR1288005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARLAF-09A-01R.indel.vcf	3			
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARLAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLAF-09A-01R	RNA	EFO	SRS602033	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLAF-09A-01R A32627 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32627	SRX543458	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARLAF-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARLAF-09A-01R A32627 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2258-1./A32627.fastq	SRR1797127	@dbgap@:reads/SRP011999/SRS602033/SRX543458/SRR1797127/SRR1797127.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_1_CTATAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288005	@dbgap@:reads/SRP011999/SRS602033/SRX543458/SRR1288005/SRR1288005.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARLAF-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARLEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLEK-03A-01R	RNA	EFO	SRS602122	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLEK-03A-01R A32750 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32750	SRX547577	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARLEK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARLEK-03A-01R A32750 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2276-1./A32750.fastq	SRR1791090	@dbgap@:reads/SRP011999/SRS602122/SRX547577/SRR1791090/SRR1791090.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_3_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292976	@dbgap@:reads/SRP011999/SRS602122/SRX547577/SRR1292976/SRR1292976.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARLEK-03A-01R.exon.quantification.txt	3			
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARLEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLEK-03A-01R	RNA	EFO	SRS602122	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLEK-03A-01R A32750 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32750	SRX547577	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARLEK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARLEK-03A-01R A32750 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2276-1./A32750.fastq	SRR1791090	@dbgap@:reads/SRP011999/SRS602122/SRX547577/SRR1791090/SRR1791090.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_3_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292976	@dbgap@:reads/SRP011999/SRS602122/SRX547577/SRR1292976/SRR1292976.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARLEK-03A-01R.gene.quantification.txt	3			
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARLEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLEK-03A-01R	RNA	EFO	SRS602122	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLEK-03A-01R A32750 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32750	SRX547577	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARLEK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARLEK-03A-01R A32750 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2276-1./A32750.fastq	SRR1791090	@dbgap@:reads/SRP011999/SRS602122/SRX547577/SRR1791090/SRR1791090.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_3_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292976	@dbgap@:reads/SRP011999/SRS602122/SRX547577/SRR1292976/SRR1292976.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARLEK-03A-01R.isoform.quantification.txt	3			
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARLEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLEK-03A-01R	RNA	EFO	SRS602122	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLEK-03A-01R A32750 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32750	SRX547577	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARLEK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARLEK-03A-01R A32750 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2276-1./A32750.fastq	SRR1791090	@dbgap@:reads/SRP011999/SRS602122/SRX547577/SRR1791090/SRR1791090.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_3_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292976	@dbgap@:reads/SRP011999/SRS602122/SRX547577/SRR1292976/SRR1292976.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARLEK-03A-01R.fusion.vcf	3			
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARLEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLEK-03A-01R	RNA	EFO	SRS602122	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLEK-03A-01R A32750 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32750	SRX547577	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARLEK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARLEK-03A-01R A32750 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2276-1./A32750.fastq	SRR1791090	@dbgap@:reads/SRP011999/SRS602122/SRX547577/SRR1791090/SRR1791090.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_3_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292976	@dbgap@:reads/SRP011999/SRS602122/SRX547577/SRR1292976/SRR1292976.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARLEK-03A-01R.indel.vcf	3			
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARLEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLEK-03A-01R	RNA	EFO	SRS602122	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARLEK-03A-01R A32750 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32750	SRX547577	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARLEK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARLEK-03A-01R A32750 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2276-1./A32750.fastq	SRR1791090	@dbgap@:reads/SRP011999/SRS602122/SRX547577/SRR1791090/SRR1791090.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_3_ACAGTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292976	@dbgap@:reads/SRP011999/SRS602122/SRX547577/SRR1292976/SRR1292976.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARLEK-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARLJA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLJA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARLJA-09A-01R	RNA	EFO	SRS1284435	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARLJA-09A-01R SJALL015245_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	37.6	SJALL015245_D1_RNASEQ_1	SRX1571381		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARLJA-09A-01R SJALL015245_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARLJA-09A-01R.fastq	SRR3162148	@dbgap@:reads/SRP011999/SRS1284435/SRX1571381/SRR3162148/SRR3162148.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARLJA-09A-01R.expression.txt	3			
TARGET-10-PARLJA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLJA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARLJA-09A-01R	RNA	EFO	SRS1284435	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARLJA-09A-01R SJALL015245_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	37.6	SJALL015245_D1_RNASEQ_1	SRX1571381		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARLJA-09A-01R SJALL015245_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARLJA-09A-01R.fastq	SRR3162148	@dbgap@:reads/SRP011999/SRS1284435/SRX1571381/SRR3162148/SRR3162148.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARLST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARLST-09A-01R	RNA	EFO	SRS1284434	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARLST-09A-01R SJTALL002019_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	36.8	SJTALL002019_D1_RNASEQ_1	SRX1571382		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARLST-09A-01R SJTALL002019_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARLST-09A-01R.fastq	SRR3162149	@dbgap@:reads/SRP011999/SRS1284434/SRX1571382/SRR3162149/SRR3162149.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARLST-09A-01R.expression.txt	3			
TARGET-10-PARLST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARLST-09A-01R	RNA	EFO	SRS1284434	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARLST-09A-01R SJTALL002019_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	36.8	SJTALL002019_D1_RNASEQ_1	SRX1571382		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARLST-09A-01R SJTALL002019_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARLST-09A-01R.fastq	SRR3162149	@dbgap@:reads/SRP011999/SRS1284434/SRX1571382/SRR3162149/SRR3162149.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARMFF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMFF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARMFF-09A-01R	RNA	EFO	SRS1284433	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARMFF-09A-01R SJALL015246_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	35.7	SJALL015246_D1_RNASEQ_1	SRX1571383		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARMFF-09A-01R SJALL015246_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARMFF-09A-01R.fastq	SRR3162150	@dbgap@:reads/SRP011999/SRS1284433/SRX1571383/SRR3162150/SRR3162150.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARMFF-09A-01R.expression.txt	3			
TARGET-10-PARMFF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMFF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARMFF-09A-01R	RNA	EFO	SRS1284433	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARMFF-09A-01R SJALL015246_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	35.7	SJALL015246_D1_RNASEQ_1	SRX1571383		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARMFF-09A-01R SJALL015246_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARMFF-09A-01R.fastq	SRR3162150	@dbgap@:reads/SRP011999/SRS1284433/SRX1571383/SRR3162150/SRR3162150.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARMIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMIH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARMIH-09A-01R	RNA	EFO	SRS1284432	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARMIH-09A-01R SJALL015247_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	38.9	SJALL015247_D1_RNASEQ_1	SRX1571384		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARMIH-09A-01R SJALL015247_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARMIH-09A-01R.fastq	SRR3162151	@dbgap@:reads/SRP011999/SRS1284432/SRX1571384/SRR3162151/SRR3162151.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARMIH-09A-01R.expression.txt	3			
TARGET-10-PARMIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMIH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARMIH-09A-01R	RNA	EFO	SRS1284432	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARMIH-09A-01R SJALL015247_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	38.9	SJALL015247_D1_RNASEQ_1	SRX1571384		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARMIH-09A-01R SJALL015247_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARMIH-09A-01R.fastq	SRR3162151	@dbgap@:reads/SRP011999/SRS1284432/SRX1571384/SRR3162151/SRR3162151.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARMKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMKK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARMKK-09A-01R	RNA	EFO	SRS1284430	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARMKK-09A-01R SJALL015260_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	169	37.6	SJALL015260_D1_RNASEQ_1	SRX1571385		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARMKK-09A-01R SJALL015260_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARMKK-09A-01R.fastq	SRR3162152	@dbgap@:reads/SRP011999/SRS1284430/SRX1571385/SRR3162152/SRR3162152.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARMKK-09A-01R.expression.txt	3			
TARGET-10-PARMKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMKK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARMKK-09A-01R	RNA	EFO	SRS1284430	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARMKK-09A-01R SJALL015260_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	169	37.6	SJALL015260_D1_RNASEQ_1	SRX1571385		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARMKK-09A-01R SJALL015260_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARMKK-09A-01R.fastq	SRR3162152	@dbgap@:reads/SRP011999/SRS1284430/SRX1571385/SRR3162152/SRR3162152.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARMKM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMKM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARMKM-03A-01R	RNA	EFO	SRS1284431	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARMKM-03A-01R SJALL015261_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	35.7	SJALL015261_D1_RNASEQ_1	SRX1571386		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARMKM-03A-01R SJALL015261_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARMKM-03A-01R.fastq	SRR3162153	@dbgap@:reads/SRP011999/SRS1284431/SRX1571386/SRR3162153/SRR3162153.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARMKM-03A-01R.expression.txt	3			
TARGET-10-PARMKM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMKM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARMKM-03A-01R	RNA	EFO	SRS1284431	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARMKM-03A-01R SJALL015261_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	35.7	SJALL015261_D1_RNASEQ_1	SRX1571386		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARMKM-03A-01R SJALL015261_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARMKM-03A-01R.fastq	SRR3162153	@dbgap@:reads/SRP011999/SRS1284431/SRX1571386/SRR3162153/SRR3162153.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARMMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMMV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARMMV-09A-01R	RNA	EFO	SRS1284429	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARMMV-09A-01R SJALL015262_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	37.1	SJALL015262_D1_RNASEQ_1	SRX1571387		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARMMV-09A-01R SJALL015262_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARMMV-09A-01R.fastq	SRR3162154	@dbgap@:reads/SRP011999/SRS1284429/SRX1571387/SRR3162154/SRR3162154.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARMMV-09A-01R.expression.txt	3			
TARGET-10-PARMMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMMV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARMMV-09A-01R	RNA	EFO	SRS1284429	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARMMV-09A-01R SJALL015262_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	37.1	SJALL015262_D1_RNASEQ_1	SRX1571387		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARMMV-09A-01R SJALL015262_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARMMV-09A-01R.fastq	SRR3162154	@dbgap@:reads/SRP011999/SRS1284429/SRX1571387/SRR3162154/SRR3162154.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARMRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMRF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARMRF-09A-01R	RNA	EFO	SRS1284428	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARMRF-09A-01R SJALL015263_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	148	31.8	SJALL015263_D1_RNASEQ_1	SRX1571388		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARMRF-09A-01R SJALL015263_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARMRF-09A-01R.fastq	SRR3162155	@dbgap@:reads/SRP011999/SRS1284428/SRX1571388/SRR3162155/SRR3162155.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARMRF-09A-01R.expression.txt	3			
TARGET-10-PARMRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMRF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARMRF-09A-01R	RNA	EFO	SRS1284428	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARMRF-09A-01R SJALL015263_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	148	31.8	SJALL015263_D1_RNASEQ_1	SRX1571388		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARMRF-09A-01R SJALL015263_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARMRF-09A-01R.fastq	SRR3162155	@dbgap@:reads/SRP011999/SRS1284428/SRX1571388/SRR3162155/SRR3162155.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMSP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMSP-04A-01R	RNA	EFO	SRS602062	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMSP-04A-01R A32629 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32629	SRX543392	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARMSP-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARMSP-04A-01R A32629 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2238-1./A32629.fastq	SRR1797101	@dbgap@:reads/SRP011999/SRS602062/SRX543392/SRR1797101/SRR1797101.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_5_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288052	@dbgap@:reads/SRP011999/SRS602062/SRX543392/SRR1288052/SRR1288052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARMSP-04A-01R.exon.quantification.txt	3			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMSP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMSP-04A-01R	RNA	EFO	SRS602062	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMSP-04A-01R A32629 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32629	SRX543392	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARMSP-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARMSP-04A-01R A32629 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2238-1./A32629.fastq	SRR1797101	@dbgap@:reads/SRP011999/SRS602062/SRX543392/SRR1797101/SRR1797101.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_5_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288052	@dbgap@:reads/SRP011999/SRS602062/SRX543392/SRR1288052/SRR1288052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARMSP-04A-01R.gene.quantification.txt	3			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMSP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMSP-04A-01R	RNA	EFO	SRS602062	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMSP-04A-01R A32629 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32629	SRX543392	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARMSP-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARMSP-04A-01R A32629 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2238-1./A32629.fastq	SRR1797101	@dbgap@:reads/SRP011999/SRS602062/SRX543392/SRR1797101/SRR1797101.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_5_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288052	@dbgap@:reads/SRP011999/SRS602062/SRX543392/SRR1288052/SRR1288052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARMSP-04A-01R.isoform.quantification.txt	3			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMSP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMSP-04A-01R	RNA	EFO	SRS602062	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMSP-04A-01R A32629 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32629	SRX543392	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARMSP-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARMSP-04A-01R A32629 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2238-1./A32629.fastq	SRR1797101	@dbgap@:reads/SRP011999/SRS602062/SRX543392/SRR1797101/SRR1797101.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_5_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288052	@dbgap@:reads/SRP011999/SRS602062/SRX543392/SRR1288052/SRR1288052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARMSP-04A-01R.fusion.vcf	3			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMSP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMSP-04A-01R	RNA	EFO	SRS602062	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMSP-04A-01R A32629 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32629	SRX543392	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARMSP-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARMSP-04A-01R A32629 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2238-1./A32629.fastq	SRR1797101	@dbgap@:reads/SRP011999/SRS602062/SRX543392/SRR1797101/SRR1797101.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_5_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288052	@dbgap@:reads/SRP011999/SRS602062/SRX543392/SRR1288052/SRR1288052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARMSP-04A-01R.indel.vcf	3			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMSP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMSP-04A-01R	RNA	EFO	SRS602062	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMSP-04A-01R A32629 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32629	SRX543392	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARMSP-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARMSP-04A-01R A32629 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2238-1./A32629.fastq	SRR1797101	@dbgap@:reads/SRP011999/SRS602062/SRX543392/SRR1797101/SRR1797101.sra	1	"LOW 5'/3'COVERAGE RATIO (genes with even 5'/3' coverage < 50%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_5_TACAGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288052	@dbgap@:reads/SRP011999/SRS602062/SRX543392/SRR1288052/SRR1288052.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARMSP-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMSP-09A-01R	RNA	EFO	SRS602052	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMSP-09A-01R A32630 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32630	SRX543401	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARMSP-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARMSP-09A-01R A32630 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2235-1./A32630.fastq	SRR1797088	@dbgap@:reads/SRP011999/SRS602052/SRX543401/SRR1797088/SRR1797088.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_2_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288068	@dbgap@:reads/SRP011999/SRS602052/SRX543401/SRR1288068/SRR1288068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARMSP-09A-01R.exon.quantification.txt	3			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMSP-09A-01R	RNA	EFO	SRS602052	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMSP-09A-01R A32630 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32630	SRX543401	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARMSP-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARMSP-09A-01R A32630 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2235-1./A32630.fastq	SRR1797088	@dbgap@:reads/SRP011999/SRS602052/SRX543401/SRR1797088/SRR1797088.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_2_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288068	@dbgap@:reads/SRP011999/SRS602052/SRX543401/SRR1288068/SRR1288068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARMSP-09A-01R.gene.quantification.txt	3			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMSP-09A-01R	RNA	EFO	SRS602052	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMSP-09A-01R A32630 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32630	SRX543401	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARMSP-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARMSP-09A-01R A32630 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2235-1./A32630.fastq	SRR1797088	@dbgap@:reads/SRP011999/SRS602052/SRX543401/SRR1797088/SRR1797088.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_2_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288068	@dbgap@:reads/SRP011999/SRS602052/SRX543401/SRR1288068/SRR1288068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARMSP-09A-01R.isoform.quantification.txt	3			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMSP-09A-01R	RNA	EFO	SRS602052	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMSP-09A-01R A32630 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32630	SRX543401	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARMSP-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARMSP-09A-01R A32630 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2235-1./A32630.fastq	SRR1797088	@dbgap@:reads/SRP011999/SRS602052/SRX543401/SRR1797088/SRR1797088.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_2_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288068	@dbgap@:reads/SRP011999/SRS602052/SRX543401/SRR1288068/SRR1288068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARMSP-09A-01R.fusion.vcf	3			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMSP-09A-01R	RNA	EFO	SRS602052	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMSP-09A-01R A32630 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32630	SRX543401	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARMSP-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARMSP-09A-01R A32630 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2235-1./A32630.fastq	SRR1797088	@dbgap@:reads/SRP011999/SRS602052/SRX543401/SRR1797088/SRR1797088.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_2_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288068	@dbgap@:reads/SRP011999/SRS602052/SRX543401/SRR1288068/SRR1288068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARMSP-09A-01R.indel.vcf	3			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMSP-09A-01R	RNA	EFO	SRS602052	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMSP-09A-01R A32630 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32630	SRX543401	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARMSP-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARMSP-09A-01R A32630 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2235-1./A32630.fastq	SRR1797088	@dbgap@:reads/SRP011999/SRS602052/SRX543401/SRR1797088/SRR1797088.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BAACXX_2_TGCCAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288068	@dbgap@:reads/SRP011999/SRS602052/SRX543401/SRR1288068/SRR1288068.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARMSP-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARMUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMUC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARMUC-03A-01R	RNA	EFO	SRS1284427	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARMUC-03A-01R SJALL015272_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	36.9	SJALL015272_D1_RNASEQ_1	SRX1571389		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARMUC-03A-01R SJALL015272_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARMUC-03A-01R.fastq	SRR3162156	@dbgap@:reads/SRP011999/SRS1284427/SRX1571389/SRR3162156/SRR3162156.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARMUC-03A-01R.expression.txt	3			
TARGET-10-PARMUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMUC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARMUC-03A-01R	RNA	EFO	SRS1284427	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARMUC-03A-01R SJALL015272_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	36.9	SJALL015272_D1_RNASEQ_1	SRX1571389		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARMUC-03A-01R SJALL015272_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARMUC-03A-01R.fastq	SRR3162156	@dbgap@:reads/SRP011999/SRS1284427/SRX1571389/SRR3162156/SRR3162156.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARMWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARMWH-09A-01R	RNA	EFO	SRS1284426	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARMWH-09A-01R SJTALL021655_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	176	40.3	SJTALL021655_D2_RNASEQ_1	SRX1571390		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARMWH-09A-01R SJTALL021655_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARMWH-09A-01R.fastq	SRR3162157	@dbgap@:reads/SRP011999/SRS1284426/SRX1571390/SRR3162157/SRR3162157.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARMWH-09A-01R.expression.txt	3			
TARGET-10-PARMWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARMWH-09A-01R	RNA	EFO	SRS1284426	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARMWH-09A-01R SJTALL021655_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	176	40.3	SJTALL021655_D2_RNASEQ_1	SRX1571390		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARMWH-09A-01R SJTALL021655_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARMWH-09A-01R.fastq	SRR3162157	@dbgap@:reads/SRP011999/SRS1284426/SRX1571390/SRR3162157/SRR3162157.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMXF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMXF-03A-01R	RNA	EFO	SRS602088	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMXF-03A-01R A32631 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32631	SRX543454	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARMXF-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARMXF-03A-01R A32631 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2222-1./A32631.fastq	SRR1797072	@dbgap@:reads/SRP011999/SRS602088/SRX543454/SRR1797072/SRR1797072.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_3_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288067	@dbgap@:reads/SRP011999/SRS602088/SRX543454/SRR1288067/SRR1288067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARMXF-03A-01R.exon.quantification.txt	3			
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMXF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMXF-03A-01R	RNA	EFO	SRS602088	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMXF-03A-01R A32631 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32631	SRX543454	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARMXF-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARMXF-03A-01R A32631 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2222-1./A32631.fastq	SRR1797072	@dbgap@:reads/SRP011999/SRS602088/SRX543454/SRR1797072/SRR1797072.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_3_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288067	@dbgap@:reads/SRP011999/SRS602088/SRX543454/SRR1288067/SRR1288067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARMXF-03A-01R.gene.quantification.txt	3			
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMXF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMXF-03A-01R	RNA	EFO	SRS602088	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMXF-03A-01R A32631 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32631	SRX543454	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARMXF-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARMXF-03A-01R A32631 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2222-1./A32631.fastq	SRR1797072	@dbgap@:reads/SRP011999/SRS602088/SRX543454/SRR1797072/SRR1797072.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_3_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288067	@dbgap@:reads/SRP011999/SRS602088/SRX543454/SRR1288067/SRR1288067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARMXF-03A-01R.isoform.quantification.txt	3			
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMXF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMXF-03A-01R	RNA	EFO	SRS602088	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMXF-03A-01R A32631 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32631	SRX543454	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARMXF-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARMXF-03A-01R A32631 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2222-1./A32631.fastq	SRR1797072	@dbgap@:reads/SRP011999/SRS602088/SRX543454/SRR1797072/SRR1797072.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_3_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288067	@dbgap@:reads/SRP011999/SRS602088/SRX543454/SRR1288067/SRR1288067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARMXF-03A-01R.fusion.vcf	3			
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMXF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMXF-03A-01R	RNA	EFO	SRS602088	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMXF-03A-01R A32631 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32631	SRX543454	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARMXF-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARMXF-03A-01R A32631 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2222-1./A32631.fastq	SRR1797072	@dbgap@:reads/SRP011999/SRS602088/SRX543454/SRR1797072/SRR1797072.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_3_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288067	@dbgap@:reads/SRP011999/SRS602088/SRX543454/SRR1288067/SRR1288067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARMXF-03A-01R.indel.vcf	3			
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMXF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMXF-03A-01R	RNA	EFO	SRS602088	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMXF-03A-01R A32631 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32631	SRX543454	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARMXF-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARMXF-03A-01R A32631 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2222-1./A32631.fastq	SRR1797072	@dbgap@:reads/SRP011999/SRS602088/SRX543454/SRR1797072/SRR1797072.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_3_ATGTCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288067	@dbgap@:reads/SRP011999/SRS602088/SRX543454/SRR1288067/SRR1288067.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARMXF-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMXF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMXF-04A-01R	RNA	EFO	SRS602035	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMXF-04A-01R A32632 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32632	SRX543415	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARMXF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARMXF-04A-01R A32632 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2252-1./A32632.fastq	SRR1791097	@dbgap@:reads/SRP011999/SRS602035/SRX543415/SRR1791097/SRR1791097.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_3_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288028	@dbgap@:reads/SRP011999/SRS602035/SRX543415/SRR1288028/SRR1288028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARMXF-04A-01R.exon.quantification.txt	3			
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMXF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMXF-04A-01R	RNA	EFO	SRS602035	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMXF-04A-01R A32632 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32632	SRX543415	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARMXF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARMXF-04A-01R A32632 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2252-1./A32632.fastq	SRR1791097	@dbgap@:reads/SRP011999/SRS602035/SRX543415/SRR1791097/SRR1791097.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_3_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288028	@dbgap@:reads/SRP011999/SRS602035/SRX543415/SRR1288028/SRR1288028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARMXF-04A-01R.gene.quantification.txt	3			
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMXF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMXF-04A-01R	RNA	EFO	SRS602035	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMXF-04A-01R A32632 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32632	SRX543415	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARMXF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARMXF-04A-01R A32632 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2252-1./A32632.fastq	SRR1791097	@dbgap@:reads/SRP011999/SRS602035/SRX543415/SRR1791097/SRR1791097.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_3_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288028	@dbgap@:reads/SRP011999/SRS602035/SRX543415/SRR1288028/SRR1288028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARMXF-04A-01R.isoform.quantification.txt	3			
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMXF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMXF-04A-01R	RNA	EFO	SRS602035	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMXF-04A-01R A32632 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32632	SRX543415	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARMXF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARMXF-04A-01R A32632 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2252-1./A32632.fastq	SRR1791097	@dbgap@:reads/SRP011999/SRS602035/SRX543415/SRR1791097/SRR1791097.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_3_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288028	@dbgap@:reads/SRP011999/SRS602035/SRX543415/SRR1288028/SRR1288028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARMXF-04A-01R.fusion.vcf	3			
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMXF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMXF-04A-01R	RNA	EFO	SRS602035	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMXF-04A-01R A32632 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32632	SRX543415	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARMXF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARMXF-04A-01R A32632 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2252-1./A32632.fastq	SRR1791097	@dbgap@:reads/SRP011999/SRS602035/SRX543415/SRR1791097/SRR1791097.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_3_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288028	@dbgap@:reads/SRP011999/SRS602035/SRX543415/SRR1288028/SRR1288028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARMXF-04A-01R.indel.vcf	3			
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMXF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMXF-04A-01R	RNA	EFO	SRS602035	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARMXF-04A-01R A32632 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32632	SRX543415	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARMXF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARMXF-04A-01R A32632 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2252-1./A32632.fastq	SRR1791097	@dbgap@:reads/SRP011999/SRS602035/SRX543415/SRR1791097/SRR1791097.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_3_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288028	@dbgap@:reads/SRP011999/SRS602035/SRX543415/SRR1288028/SRR1288028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARMXF-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARNBN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNBN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARNBN-09A-01R	RNA	EFO	SRS1284425	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARNBN-09A-01R SJTALL002005_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	149	30.4	SJTALL002005_D1_RNASEQ_1	SRX1571391		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARNBN-09A-01R SJTALL002005_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARNBN-09A-01R.fastq	SRR3162158	@dbgap@:reads/SRP011999/SRS1284425/SRX1571391/SRR3162158/SRR3162158.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARNBN-09A-01R.expression.txt	3			
TARGET-10-PARNBN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNBN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARNBN-09A-01R	RNA	EFO	SRS1284425	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARNBN-09A-01R SJTALL002005_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	149	30.4	SJTALL002005_D1_RNASEQ_1	SRX1571391		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARNBN-09A-01R SJTALL002005_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARNBN-09A-01R.fastq	SRR3162158	@dbgap@:reads/SRP011999/SRS1284425/SRX1571391/SRR3162158/SRR3162158.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARNEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNEH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARNEH-09A-01R	RNA	EFO	SRS1284424	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARNEH-09A-01R SJTALL002009_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	35.8	SJTALL002009_D1_RNASEQ_1	SRX1571392		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARNEH-09A-01R SJTALL002009_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARNEH-09A-01R.fastq	SRR3162159	@dbgap@:reads/SRP011999/SRS1284424/SRX1571392/SRR3162159/SRR3162159.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARNEH-09A-01R.expression.txt	3			
TARGET-10-PARNEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNEH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARNEH-09A-01R	RNA	EFO	SRS1284424	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARNEH-09A-01R SJTALL002009_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	35.8	SJTALL002009_D1_RNASEQ_1	SRX1571392		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARNEH-09A-01R SJTALL002009_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARNEH-09A-01R.fastq	SRR3162159	@dbgap@:reads/SRP011999/SRS1284424/SRX1571392/SRR3162159/SRR3162159.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARNJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARNJB-09A-01R	RNA	EFO	SRS1284423	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARNJB-09A-01R SJTALL170_E_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	37.9	SJTALL170_E_RNASEQ_1	SRX1571393		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARNJB-09A-01R SJTALL170_E_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARNJB-09A-01R.fastq	SRR3162160	@dbgap@:reads/SRP011999/SRS1284423/SRX1571393/SRR3162160/SRR3162160.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARNJB-09A-01R.expression.txt	3			
TARGET-10-PARNJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARNJB-09A-01R	RNA	EFO	SRS1284423	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARNJB-09A-01R SJTALL170_E_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	37.9	SJTALL170_E_RNASEQ_1	SRX1571393		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARNJB-09A-01R SJTALL170_E_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARNJB-09A-01R.fastq	SRR3162160	@dbgap@:reads/SRP011999/SRS1284423/SRX1571393/SRR3162160/SRR3162160.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARNMF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNMF-03A-02R	RNA	EFO	SRS602217	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNMF-03A-02R A33604 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	200		A33604	SRX547654	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARNMF-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARNMF-03A-02R A33604 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2176-1./A33604.fastq	SRR1797069	@dbgap@:reads/SRP011999/SRS602217/SRX547654/SRR1797069/SRR1797069.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_8_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293019	@dbgap@:reads/SRP011999/SRS602217/SRX547654/SRR1293019/SRR1293019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARNMF-03A-02R.exon.quantification.txt	3			
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARNMF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNMF-03A-02R	RNA	EFO	SRS602217	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNMF-03A-02R A33604 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	200		A33604	SRX547654	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARNMF-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARNMF-03A-02R A33604 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2176-1./A33604.fastq	SRR1797069	@dbgap@:reads/SRP011999/SRS602217/SRX547654/SRR1797069/SRR1797069.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_8_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293019	@dbgap@:reads/SRP011999/SRS602217/SRX547654/SRR1293019/SRR1293019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARNMF-03A-02R.gene.quantification.txt	3			
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARNMF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNMF-03A-02R	RNA	EFO	SRS602217	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNMF-03A-02R A33604 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	200		A33604	SRX547654	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARNMF-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARNMF-03A-02R A33604 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2176-1./A33604.fastq	SRR1797069	@dbgap@:reads/SRP011999/SRS602217/SRX547654/SRR1797069/SRR1797069.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_8_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293019	@dbgap@:reads/SRP011999/SRS602217/SRX547654/SRR1293019/SRR1293019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARNMF-03A-02R.isoform.quantification.txt	3			
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARNMF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNMF-03A-02R	RNA	EFO	SRS602217	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNMF-03A-02R A33604 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	200		A33604	SRX547654	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARNMF-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARNMF-03A-02R A33604 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2176-1./A33604.fastq	SRR1797069	@dbgap@:reads/SRP011999/SRS602217/SRX547654/SRR1797069/SRR1797069.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_8_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293019	@dbgap@:reads/SRP011999/SRS602217/SRX547654/SRR1293019/SRR1293019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARNMF-03A-02R.fusion.vcf	3			
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARNMF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNMF-03A-02R	RNA	EFO	SRS602217	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNMF-03A-02R A33604 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	200		A33604	SRX547654	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARNMF-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARNMF-03A-02R A33604 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2176-1./A33604.fastq	SRR1797069	@dbgap@:reads/SRP011999/SRS602217/SRX547654/SRR1797069/SRR1797069.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_8_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293019	@dbgap@:reads/SRP011999/SRS602217/SRX547654/SRR1293019/SRR1293019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARNMF-03A-02R.indel.vcf	3			
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARNMF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNMF-03A-02R	RNA	EFO	SRS602217	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNMF-03A-02R A33604 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	200		A33604	SRX547654	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARNMF-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARNMF-03A-02R A33604 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2176-1./A33604.fastq	SRR1797069	@dbgap@:reads/SRP011999/SRS602217/SRX547654/SRR1797069/SRR1797069.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_8_TTAGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293019	@dbgap@:reads/SRP011999/SRS602217/SRX547654/SRR1293019/SRR1293019.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARNMF-03A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARNMF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNMF-04A-01R	RNA	EFO	SRS602070	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNMF-04A-01R A32633 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32633	SRX543437	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARNMF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARNMF-04A-01R A32633 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2249-1./A32633.fastq	SRR1791106	@dbgap@:reads/SRP011999/SRS602070/SRX543437/SRR1791106/SRR1791106.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_8_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288027	@dbgap@:reads/SRP011999/SRS602070/SRX543437/SRR1288027/SRR1288027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARNMF-04A-01R.exon.quantification.txt	3			
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARNMF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNMF-04A-01R	RNA	EFO	SRS602070	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNMF-04A-01R A32633 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32633	SRX543437	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARNMF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARNMF-04A-01R A32633 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2249-1./A32633.fastq	SRR1791106	@dbgap@:reads/SRP011999/SRS602070/SRX543437/SRR1791106/SRR1791106.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_8_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288027	@dbgap@:reads/SRP011999/SRS602070/SRX543437/SRR1288027/SRR1288027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARNMF-04A-01R.gene.quantification.txt	3			
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARNMF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNMF-04A-01R	RNA	EFO	SRS602070	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNMF-04A-01R A32633 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32633	SRX543437	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARNMF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARNMF-04A-01R A32633 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2249-1./A32633.fastq	SRR1791106	@dbgap@:reads/SRP011999/SRS602070/SRX543437/SRR1791106/SRR1791106.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_8_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288027	@dbgap@:reads/SRP011999/SRS602070/SRX543437/SRR1288027/SRR1288027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARNMF-04A-01R.isoform.quantification.txt	3			
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARNMF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNMF-04A-01R	RNA	EFO	SRS602070	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNMF-04A-01R A32633 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32633	SRX543437	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARNMF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARNMF-04A-01R A32633 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2249-1./A32633.fastq	SRR1791106	@dbgap@:reads/SRP011999/SRS602070/SRX543437/SRR1791106/SRR1791106.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_8_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288027	@dbgap@:reads/SRP011999/SRS602070/SRX543437/SRR1288027/SRR1288027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARNMF-04A-01R.fusion.vcf	3			
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARNMF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNMF-04A-01R	RNA	EFO	SRS602070	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNMF-04A-01R A32633 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32633	SRX543437	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARNMF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARNMF-04A-01R A32633 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2249-1./A32633.fastq	SRR1791106	@dbgap@:reads/SRP011999/SRS602070/SRX543437/SRR1791106/SRR1791106.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_8_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288027	@dbgap@:reads/SRP011999/SRS602070/SRX543437/SRR1288027/SRR1288027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARNMF-04A-01R.indel.vcf	3			
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARNMF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNMF-04A-01R	RNA	EFO	SRS602070	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNMF-04A-01R A32633 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32633	SRX543437	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARNMF-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARNMF-04A-01R A32633 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2249-1./A32633.fastq	SRR1791106	@dbgap@:reads/SRP011999/SRS602070/SRX543437/SRR1791106/SRR1791106.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_8_GGCTAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288027	@dbgap@:reads/SRP011999/SRS602070/SRX543437/SRR1288027/SRR1288027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARNMF-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARNMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNMV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARNMV-09A-01R	RNA	EFO	SRS1284421	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARNMV-09A-01R SJALL015280_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	174	42	SJALL015280_D1_RNASEQ_1	SRX1571394		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARNMV-09A-01R SJALL015280_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARNMV-09A-01R.fastq	SRR3162161	@dbgap@:reads/SRP011999/SRS1284421/SRX1571394/SRR3162161/SRR3162161.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARNMV-09A-01R.expression.txt	3			
TARGET-10-PARNMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNMV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARNMV-09A-01R	RNA	EFO	SRS1284421	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARNMV-09A-01R SJALL015280_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	174	42	SJALL015280_D1_RNASEQ_1	SRX1571394		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARNMV-09A-01R SJALL015280_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARNMV-09A-01R.fastq	SRR3162161	@dbgap@:reads/SRP011999/SRS1284421/SRX1571394/SRR3162161/SRR3162161.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARNSH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNSH-03A-01R	RNA	EFO	SRS602077	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNSH-03A-01R A32683 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32683	SRX543410	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARNSH-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARNSH-03A-01R A32683 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2248-1./A32683.fastq	SRR1797110	@dbgap@:reads/SRP011999/SRS602077/SRX543410/SRR1797110/SRR1797110.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_7_GACGGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288072	@dbgap@:reads/SRP011999/SRS602077/SRX543410/SRR1288072/SRR1288072.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARNSH-03A-01R.exon.quantification.txt	3			
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARNSH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNSH-03A-01R	RNA	EFO	SRS602077	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNSH-03A-01R A32683 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32683	SRX543410	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARNSH-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARNSH-03A-01R A32683 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2248-1./A32683.fastq	SRR1797110	@dbgap@:reads/SRP011999/SRS602077/SRX543410/SRR1797110/SRR1797110.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_7_GACGGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288072	@dbgap@:reads/SRP011999/SRS602077/SRX543410/SRR1288072/SRR1288072.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARNSH-03A-01R.gene.quantification.txt	3			
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARNSH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNSH-03A-01R	RNA	EFO	SRS602077	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNSH-03A-01R A32683 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32683	SRX543410	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARNSH-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARNSH-03A-01R A32683 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2248-1./A32683.fastq	SRR1797110	@dbgap@:reads/SRP011999/SRS602077/SRX543410/SRR1797110/SRR1797110.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_7_GACGGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288072	@dbgap@:reads/SRP011999/SRS602077/SRX543410/SRR1288072/SRR1288072.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARNSH-03A-01R.isoform.quantification.txt	3			
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARNSH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNSH-03A-01R	RNA	EFO	SRS602077	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNSH-03A-01R A32683 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32683	SRX543410	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARNSH-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARNSH-03A-01R A32683 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2248-1./A32683.fastq	SRR1797110	@dbgap@:reads/SRP011999/SRS602077/SRX543410/SRR1797110/SRR1797110.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_7_GACGGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288072	@dbgap@:reads/SRP011999/SRS602077/SRX543410/SRR1288072/SRR1288072.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARNSH-03A-01R.fusion.vcf	3			
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARNSH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNSH-03A-01R	RNA	EFO	SRS602077	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNSH-03A-01R A32683 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32683	SRX543410	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARNSH-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARNSH-03A-01R A32683 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2248-1./A32683.fastq	SRR1797110	@dbgap@:reads/SRP011999/SRS602077/SRX543410/SRR1797110/SRR1797110.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_7_GACGGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288072	@dbgap@:reads/SRP011999/SRS602077/SRX543410/SRR1288072/SRR1288072.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARNSH-03A-01R.indel.vcf	3			
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARNSH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNSH-03A-01R	RNA	EFO	SRS602077	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARNSH-03A-01R A32683 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32683	SRX543410	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARNSH-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARNSH-03A-01R A32683 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2248-1./A32683.fastq	SRR1797110	@dbgap@:reads/SRP011999/SRS602077/SRX543410/SRR1797110/SRR1797110.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_7_GACGGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288072	@dbgap@:reads/SRP011999/SRS602077/SRX543410/SRR1288072/SRR1288072.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARNSH-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARNSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARNSP-09A-01R	RNA	EFO	SRS1284422	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARNSP-09A-01R SJALL015281_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	177	42.3	SJALL015281_D1_RNASEQ_1	SRX1571395		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARNSP-09A-01R SJALL015281_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARNSP-09A-01R.fastq	SRR3162162	@dbgap@:reads/SRP011999/SRS1284422/SRX1571395/SRR3162162/SRR3162162.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARNSP-09A-01R.expression.txt	3			
TARGET-10-PARNSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARNSP-09A-01R	RNA	EFO	SRS1284422	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARNSP-09A-01R SJALL015281_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	177	42.3	SJALL015281_D1_RNASEQ_1	SRX1571395		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARNSP-09A-01R SJALL015281_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARNSP-09A-01R.fastq	SRR3162162	@dbgap@:reads/SRP011999/SRS1284422/SRX1571395/SRR3162162/SRR3162162.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARNXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNXJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARNXJ-09A-01R	RNA	EFO	SRS1284419	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARNXJ-09A-01R SJALL015275_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	171	40.5	SJALL015275_D1_RNASEQ_1	SRX1571396		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARNXJ-09A-01R SJALL015275_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARNXJ-09A-01R.fastq	SRR3162163	@dbgap@:reads/SRP011999/SRS1284419/SRX1571396/SRR3162163/SRR3162163.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARNXJ-09A-01R.expression.txt	3			
TARGET-10-PARNXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNXJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARNXJ-09A-01R	RNA	EFO	SRS1284419	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARNXJ-09A-01R SJALL015275_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	171	40.5	SJALL015275_D1_RNASEQ_1	SRX1571396		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARNXJ-09A-01R SJALL015275_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARNXJ-09A-01R.fastq	SRR3162163	@dbgap@:reads/SRP011999/SRS1284419/SRX1571396/SRR3162163/SRR3162163.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARPET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARPET-09A-01R	RNA	EFO	SRS1284420	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARPET-09A-01R SJALL015248_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	41.8	SJALL015248_D1_RNASEQ_1	SRX1571397		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARPET-09A-01R SJALL015248_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARPET-09A-01R.fastq	SRR3162164	@dbgap@:reads/SRP011999/SRS1284420/SRX1571397/SRR3162164/SRR3162164.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARPET-09A-01R.expression.txt	3			
TARGET-10-PARPET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARPET-09A-01R	RNA	EFO	SRS1284420	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARPET-09A-01R SJALL015248_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	41.8	SJALL015248_D1_RNASEQ_1	SRX1571397		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARPET-09A-01R SJALL015248_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARPET-09A-01R.fastq	SRR3162164	@dbgap@:reads/SRP011999/SRS1284420/SRX1571397/SRR3162164/SRR3162164.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARPHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARPHB-09A-01R	RNA	EFO	SRS1284418	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARPHB-09A-01R SJALL015249_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	37.2	SJALL015249_D1_RNASEQ_1	SRX1571398		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARPHB-09A-01R SJALL015249_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARPHB-09A-01R.fastq	SRR3162165	@dbgap@:reads/SRP011999/SRS1284418/SRX1571398/SRR3162165/SRR3162165.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARPHB-09A-01R.expression.txt	3			
TARGET-10-PARPHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARPHB-09A-01R	RNA	EFO	SRS1284418	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARPHB-09A-01R SJALL015249_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	37.2	SJALL015249_D1_RNASEQ_1	SRX1571398		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARPHB-09A-01R SJALL015249_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARPHB-09A-01R.fastq	SRR3162165	@dbgap@:reads/SRP011999/SRS1284418/SRX1571398/SRR3162165/SRR3162165.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPNM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPNM-09A-01R	RNA	EFO	SRS602043	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPNM-09A-01R A32684 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32684	SRX543393	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARPNM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARPNM-09A-01R A32684 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2229-1./A32684.fastq	SRR1797063	@dbgap@:reads/SRP011999/SRS602043/SRX543393/SRR1797063/SRR1797063.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_2_GGCACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288060	@dbgap@:reads/SRP011999/SRS602043/SRX543393/SRR1288060/SRR1288060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARPNM-09A-01R.exon.quantification.txt	3			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPNM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPNM-09A-01R	RNA	EFO	SRS602043	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPNM-09A-01R A32684 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32684	SRX543393	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARPNM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARPNM-09A-01R A32684 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2229-1./A32684.fastq	SRR1797063	@dbgap@:reads/SRP011999/SRS602043/SRX543393/SRR1797063/SRR1797063.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_2_GGCACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288060	@dbgap@:reads/SRP011999/SRS602043/SRX543393/SRR1288060/SRR1288060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARPNM-09A-01R.gene.quantification.txt	3			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPNM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPNM-09A-01R	RNA	EFO	SRS602043	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPNM-09A-01R A32684 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32684	SRX543393	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARPNM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARPNM-09A-01R A32684 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2229-1./A32684.fastq	SRR1797063	@dbgap@:reads/SRP011999/SRS602043/SRX543393/SRR1797063/SRR1797063.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_2_GGCACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288060	@dbgap@:reads/SRP011999/SRS602043/SRX543393/SRR1288060/SRR1288060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARPNM-09A-01R.isoform.quantification.txt	3			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPNM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPNM-09A-01R	RNA	EFO	SRS602043	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPNM-09A-01R A32684 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32684	SRX543393	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARPNM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARPNM-09A-01R A32684 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2229-1./A32684.fastq	SRR1797063	@dbgap@:reads/SRP011999/SRS602043/SRX543393/SRR1797063/SRR1797063.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_2_GGCACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288060	@dbgap@:reads/SRP011999/SRS602043/SRX543393/SRR1288060/SRR1288060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARPNM-09A-01R.fusion.vcf	3			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPNM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPNM-09A-01R	RNA	EFO	SRS602043	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPNM-09A-01R A32684 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32684	SRX543393	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARPNM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARPNM-09A-01R A32684 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2229-1./A32684.fastq	SRR1797063	@dbgap@:reads/SRP011999/SRS602043/SRX543393/SRR1797063/SRR1797063.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_2_GGCACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288060	@dbgap@:reads/SRP011999/SRS602043/SRX543393/SRR1288060/SRR1288060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARPNM-09A-01R.indel.vcf	3			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPNM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPNM-09A-01R	RNA	EFO	SRS602043	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPNM-09A-01R A32684 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32684	SRX543393	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARPNM-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARPNM-09A-01R A32684 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2229-1./A32684.fastq	SRR1797063	@dbgap@:reads/SRP011999/SRS602043/SRX543393/SRR1797063/SRR1797063.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34U7ACXX_2_GGCACA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288060	@dbgap@:reads/SRP011999/SRS602043/SRX543393/SRR1288060/SRR1288060.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARPNM-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPRW-04A-01R	RNA	EFO	SRS602076	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPRW-04A-01R A32685 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32685	SRX543411	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARPRW-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARPRW-04A-01R A32685 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2242-1./A32685.fastq	SRR1797113	@dbgap@:reads/SRP011999/SRS602076/SRX543411/SRR1797113/SRR1797113.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_1_TCGGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288051	@dbgap@:reads/SRP011999/SRS602076/SRX543411/SRR1288051/SRR1288051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARPRW-04A-01R.exon.quantification.txt	3			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPRW-04A-01R	RNA	EFO	SRS602076	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPRW-04A-01R A32685 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32685	SRX543411	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARPRW-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARPRW-04A-01R A32685 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2242-1./A32685.fastq	SRR1797113	@dbgap@:reads/SRP011999/SRS602076/SRX543411/SRR1797113/SRR1797113.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_1_TCGGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288051	@dbgap@:reads/SRP011999/SRS602076/SRX543411/SRR1288051/SRR1288051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARPRW-04A-01R.gene.quantification.txt	3			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPRW-04A-01R	RNA	EFO	SRS602076	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPRW-04A-01R A32685 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32685	SRX543411	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARPRW-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARPRW-04A-01R A32685 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2242-1./A32685.fastq	SRR1797113	@dbgap@:reads/SRP011999/SRS602076/SRX543411/SRR1797113/SRR1797113.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_1_TCGGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288051	@dbgap@:reads/SRP011999/SRS602076/SRX543411/SRR1288051/SRR1288051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARPRW-04A-01R.isoform.quantification.txt	3			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPRW-04A-01R	RNA	EFO	SRS602076	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPRW-04A-01R A32685 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32685	SRX543411	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARPRW-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARPRW-04A-01R A32685 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2242-1./A32685.fastq	SRR1797113	@dbgap@:reads/SRP011999/SRS602076/SRX543411/SRR1797113/SRR1797113.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_1_TCGGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288051	@dbgap@:reads/SRP011999/SRS602076/SRX543411/SRR1288051/SRR1288051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARPRW-04A-01R.fusion.vcf	3			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPRW-04A-01R	RNA	EFO	SRS602076	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPRW-04A-01R A32685 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32685	SRX543411	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARPRW-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARPRW-04A-01R A32685 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2242-1./A32685.fastq	SRR1797113	@dbgap@:reads/SRP011999/SRS602076/SRX543411/SRR1797113/SRR1797113.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_1_TCGGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288051	@dbgap@:reads/SRP011999/SRS602076/SRX543411/SRR1288051/SRR1288051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARPRW-04A-01R.indel.vcf	3			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPRW-04A-01R	RNA	EFO	SRS602076	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPRW-04A-01R A32685 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32685	SRX543411	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARPRW-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARPRW-04A-01R A32685 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2242-1./A32685.fastq	SRR1797113	@dbgap@:reads/SRP011999/SRS602076/SRX543411/SRR1797113/SRR1797113.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_1_TCGGCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1288051	@dbgap@:reads/SRP011999/SRS602076/SRX543411/SRR1288051/SRR1288051.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARPRW-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPRW-09A-01R	RNA	EFO	SRS602059	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPRW-09A-01R A32686 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32686	SRX543429	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARPRW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARPRW-09A-01R A32686 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2246-1./A32686.fastq	SRR1797104	@dbgap@:reads/SRP011999/SRS602059/SRX543429/SRR1797104/SRR1797104.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_5_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288042	@dbgap@:reads/SRP011999/SRS602059/SRX543429/SRR1288042/SRR1288042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARPRW-09A-01R.exon.quantification.txt	3			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPRW-09A-01R	RNA	EFO	SRS602059	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPRW-09A-01R A32686 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32686	SRX543429	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARPRW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARPRW-09A-01R A32686 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2246-1./A32686.fastq	SRR1797104	@dbgap@:reads/SRP011999/SRS602059/SRX543429/SRR1797104/SRR1797104.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_5_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288042	@dbgap@:reads/SRP011999/SRS602059/SRX543429/SRR1288042/SRR1288042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARPRW-09A-01R.gene.quantification.txt	3			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPRW-09A-01R	RNA	EFO	SRS602059	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPRW-09A-01R A32686 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32686	SRX543429	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARPRW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARPRW-09A-01R A32686 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2246-1./A32686.fastq	SRR1797104	@dbgap@:reads/SRP011999/SRS602059/SRX543429/SRR1797104/SRR1797104.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_5_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288042	@dbgap@:reads/SRP011999/SRS602059/SRX543429/SRR1288042/SRR1288042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARPRW-09A-01R.isoform.quantification.txt	3			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPRW-09A-01R	RNA	EFO	SRS602059	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPRW-09A-01R A32686 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32686	SRX543429	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARPRW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARPRW-09A-01R A32686 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2246-1./A32686.fastq	SRR1797104	@dbgap@:reads/SRP011999/SRS602059/SRX543429/SRR1797104/SRR1797104.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_5_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288042	@dbgap@:reads/SRP011999/SRS602059/SRX543429/SRR1288042/SRR1288042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARPRW-09A-01R.fusion.vcf	3			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPRW-09A-01R	RNA	EFO	SRS602059	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPRW-09A-01R A32686 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32686	SRX543429	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARPRW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARPRW-09A-01R A32686 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2246-1./A32686.fastq	SRR1797104	@dbgap@:reads/SRP011999/SRS602059/SRX543429/SRR1797104/SRR1797104.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_5_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288042	@dbgap@:reads/SRP011999/SRS602059/SRX543429/SRR1288042/SRR1288042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARPRW-09A-01R.indel.vcf	3			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPRW-09A-01R	RNA	EFO	SRS602059	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPRW-09A-01R A32686 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32686	SRX543429	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARPRW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PARPRW-09A-01R A32686 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2246-1./A32686.fastq	SRR1797104	@dbgap@:reads/SRP011999/SRS602059/SRX543429/SRR1797104/SRR1797104.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_5_AGGTTT_withJunctionsOnGenome_dupsFlagged.bam	SRR1288042	@dbgap@:reads/SRP011999/SRS602059/SRX543429/SRR1288042/SRR1288042.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARPRW-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARPUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPUL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARPUL-09A-01R	RNA	EFO	SRS1284417	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARPUL-09A-01R SJALL016653_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	37.6	SJALL016653_D1_RNASEQ_1	SRX1571399		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARPUL-09A-01R SJALL016653_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARPUL-09A-01R.fastq	SRR3162166	@dbgap@:reads/SRP011999/SRS1284417/SRX1571399/SRR3162166/SRR3162166.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARPUL-09A-01R.expression.txt	3			
TARGET-10-PARPUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPUL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARPUL-09A-01R	RNA	EFO	SRS1284417	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARPUL-09A-01R SJALL016653_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	37.6	SJALL016653_D1_RNASEQ_1	SRX1571399		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARPUL-09A-01R SJALL016653_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARPUL-09A-01R.fastq	SRR3162166	@dbgap@:reads/SRP011999/SRS1284417/SRX1571399/SRR3162166/SRR3162166.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARPYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPYJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARPYJ-09A-01R	RNA	EFO	SRS1284416	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARPYJ-09A-01R SJALL015250_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	39.5	SJALL015250_D1_RNASEQ_1	SRX1571400		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARPYJ-09A-01R SJALL015250_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARPYJ-09A-01R.fastq	SRR3162167	@dbgap@:reads/SRP011999/SRS1284416/SRX1571400/SRR3162167/SRR3162167.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARPYJ-09A-01R.expression.txt	3			
TARGET-10-PARPYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPYJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARPYJ-09A-01R	RNA	EFO	SRS1284416	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARPYJ-09A-01R SJALL015250_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	39.5	SJALL015250_D1_RNASEQ_1	SRX1571400		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARPYJ-09A-01R SJALL015250_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARPYJ-09A-01R.fastq	SRR3162167	@dbgap@:reads/SRP011999/SRS1284416/SRX1571400/SRR3162167/SRR3162167.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPZJ-03A-02R	RNA	EFO	SRS602234	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPZJ-03A-02R A33616 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33616	SRX547648	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARPZJ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARPZJ-03A-02R A33616 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2200-1./A33616.fastq	SRR1797105	@dbgap@:reads/SRP011999/SRS602234/SRX547648/SRR1797105/SRR1797105.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33616_1_lane_dupsFlagged.bam	SRR1293020	@dbgap@:reads/SRP011999/SRS602234/SRX547648/SRR1293020/SRR1293020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARPZJ-03A-02R.exon.quantification.txt	3			
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPZJ-03A-02R	RNA	EFO	SRS602234	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPZJ-03A-02R A33616 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33616	SRX547648	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARPZJ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARPZJ-03A-02R A33616 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2200-1./A33616.fastq	SRR1797105	@dbgap@:reads/SRP011999/SRS602234/SRX547648/SRR1797105/SRR1797105.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33616_1_lane_dupsFlagged.bam	SRR1293020	@dbgap@:reads/SRP011999/SRS602234/SRX547648/SRR1293020/SRR1293020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARPZJ-03A-02R.gene.quantification.txt	3			
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPZJ-03A-02R	RNA	EFO	SRS602234	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPZJ-03A-02R A33616 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33616	SRX547648	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARPZJ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARPZJ-03A-02R A33616 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2200-1./A33616.fastq	SRR1797105	@dbgap@:reads/SRP011999/SRS602234/SRX547648/SRR1797105/SRR1797105.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33616_1_lane_dupsFlagged.bam	SRR1293020	@dbgap@:reads/SRP011999/SRS602234/SRX547648/SRR1293020/SRR1293020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARPZJ-03A-02R.isoform.quantification.txt	3			
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPZJ-03A-02R	RNA	EFO	SRS602234	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPZJ-03A-02R A33616 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33616	SRX547648	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARPZJ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARPZJ-03A-02R A33616 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2200-1./A33616.fastq	SRR1797105	@dbgap@:reads/SRP011999/SRS602234/SRX547648/SRR1797105/SRR1797105.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33616_1_lane_dupsFlagged.bam	SRR1293020	@dbgap@:reads/SRP011999/SRS602234/SRX547648/SRR1293020/SRR1293020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARPZJ-03A-02R.fusion.vcf	3			
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPZJ-03A-02R	RNA	EFO	SRS602234	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPZJ-03A-02R A33616 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33616	SRX547648	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARPZJ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARPZJ-03A-02R A33616 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2200-1./A33616.fastq	SRR1797105	@dbgap@:reads/SRP011999/SRS602234/SRX547648/SRR1797105/SRR1797105.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33616_1_lane_dupsFlagged.bam	SRR1293020	@dbgap@:reads/SRP011999/SRS602234/SRX547648/SRR1293020/SRR1293020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARPZJ-03A-02R.indel.vcf	3			
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPZJ-03A-02R	RNA	EFO	SRS602234	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARPZJ-03A-02R A33616 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33616	SRX547648	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARPZJ-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARPZJ-03A-02R A33616 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2200-1./A33616.fastq	SRR1797105	@dbgap@:reads/SRP011999/SRS602234/SRX547648/SRR1797105/SRR1797105.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33616_1_lane_dupsFlagged.bam	SRR1293020	@dbgap@:reads/SRP011999/SRS602234/SRX547648/SRR1293020/SRR1293020.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARPZJ-03A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARRKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARRKK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARRKK-09A-01R	RNA	EFO	SRS1284415	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARRKK-09A-01R SJTALL002036_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	152	33.1	SJTALL002036_D1_RNASEQ_1	SRX1571401		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARRKK-09A-01R SJTALL002036_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARRKK-09A-01R.fastq	SRR3162168	@dbgap@:reads/SRP011999/SRS1284415/SRX1571401/SRR3162168/SRR3162168.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARRKK-09A-01R.expression.txt	3			
TARGET-10-PARRKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARRKK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARRKK-09A-01R	RNA	EFO	SRS1284415	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARRKK-09A-01R SJTALL002036_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	152	33.1	SJTALL002036_D1_RNASEQ_1	SRX1571401		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARRKK-09A-01R SJTALL002036_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARRKK-09A-01R.fastq	SRR3162168	@dbgap@:reads/SRP011999/SRS1284415/SRX1571401/SRR3162168/SRR3162168.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARSET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARSET-09A-01R	RNA	EFO	SRS1284414	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARSET-09A-01R SJALL015251_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	174	41.5	SJALL015251_D1_RNASEQ_1	SRX1571402		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARSET-09A-01R SJALL015251_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARSET-09A-01R.fastq	SRR3162169	@dbgap@:reads/SRP011999/SRS1284414/SRX1571402/SRR3162169/SRR3162169.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARSET-09A-01R.expression.txt	3			
TARGET-10-PARSET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARSET-09A-01R	RNA	EFO	SRS1284414	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARSET-09A-01R SJALL015251_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	174	41.5	SJALL015251_D1_RNASEQ_1	SRX1571402		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARSET-09A-01R SJALL015251_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARSET-09A-01R.fastq	SRR3162169	@dbgap@:reads/SRP011999/SRS1284414/SRX1571402/SRR3162169/SRR3162169.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARSGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSGC-03A-02R	RNA	EFO	SRS602204	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSGC-03A-02R A33618 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33618	SRX547670	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARSGC-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARSGC-03A-02R A33618 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2199-1./A33618.fastq	SRR1791080	@dbgap@:reads/SRP011999/SRS602204/SRX547670/SRR1791080/SRR1791080.sra	1	"HIGH NON-GENIC CONTENT (intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_7_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293028	@dbgap@:reads/SRP011999/SRS602204/SRX547670/SRR1293028/SRR1293028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARSGC-03A-02R.exon.quantification.txt	3			
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARSGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSGC-03A-02R	RNA	EFO	SRS602204	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSGC-03A-02R A33618 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33618	SRX547670	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARSGC-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARSGC-03A-02R A33618 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2199-1./A33618.fastq	SRR1791080	@dbgap@:reads/SRP011999/SRS602204/SRX547670/SRR1791080/SRR1791080.sra	1	"HIGH NON-GENIC CONTENT (intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_7_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293028	@dbgap@:reads/SRP011999/SRS602204/SRX547670/SRR1293028/SRR1293028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARSGC-03A-02R.gene.quantification.txt	3			
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARSGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSGC-03A-02R	RNA	EFO	SRS602204	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSGC-03A-02R A33618 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33618	SRX547670	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARSGC-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARSGC-03A-02R A33618 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2199-1./A33618.fastq	SRR1791080	@dbgap@:reads/SRP011999/SRS602204/SRX547670/SRR1791080/SRR1791080.sra	1	"HIGH NON-GENIC CONTENT (intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_7_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293028	@dbgap@:reads/SRP011999/SRS602204/SRX547670/SRR1293028/SRR1293028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARSGC-03A-02R.isoform.quantification.txt	3			
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARSGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSGC-03A-02R	RNA	EFO	SRS602204	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSGC-03A-02R A33618 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33618	SRX547670	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARSGC-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARSGC-03A-02R A33618 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2199-1./A33618.fastq	SRR1791080	@dbgap@:reads/SRP011999/SRS602204/SRX547670/SRR1791080/SRR1791080.sra	1	"HIGH NON-GENIC CONTENT (intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_7_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293028	@dbgap@:reads/SRP011999/SRS602204/SRX547670/SRR1293028/SRR1293028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARSGC-03A-02R.fusion.vcf	3			
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARSGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSGC-03A-02R	RNA	EFO	SRS602204	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSGC-03A-02R A33618 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33618	SRX547670	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARSGC-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARSGC-03A-02R A33618 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2199-1./A33618.fastq	SRR1791080	@dbgap@:reads/SRP011999/SRS602204/SRX547670/SRR1791080/SRR1791080.sra	1	"HIGH NON-GENIC CONTENT (intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_7_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293028	@dbgap@:reads/SRP011999/SRS602204/SRX547670/SRR1293028/SRR1293028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARSGC-03A-02R.indel.vcf	3			
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARSGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSGC-03A-02R	RNA	EFO	SRS602204	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSGC-03A-02R A33618 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33618	SRX547670	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARSGC-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARSGC-03A-02R A33618 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2199-1./A33618.fastq	SRR1791080	@dbgap@:reads/SRP011999/SRS602204/SRX547670/SRR1791080/SRR1791080.sra	1	"HIGH NON-GENIC CONTENT (intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_7_AAGCGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1293028	@dbgap@:reads/SRP011999/SRS602204/SRX547670/SRR1293028/SRR1293028.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARSGC-03A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARSJG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSJG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARSJG-09A-01R	RNA	EFO	SRS1284413	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARSJG-09A-01R SJALL015264_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	153	33	SJALL015264_D1_RNASEQ_1	SRX1571403		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARSJG-09A-01R SJALL015264_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARSJG-09A-01R.fastq	SRR3162170	@dbgap@:reads/SRP011999/SRS1284413/SRX1571403/SRR3162170/SRR3162170.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARSJG-09A-01R.expression.txt	3			
TARGET-10-PARSJG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSJG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARSJG-09A-01R	RNA	EFO	SRS1284413	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARSJG-09A-01R SJALL015264_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	153	33	SJALL015264_D1_RNASEQ_1	SRX1571403		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARSJG-09A-01R SJALL015264_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARSJG-09A-01R.fastq	SRR3162170	@dbgap@:reads/SRP011999/SRS1284413/SRX1571403/SRR3162170/SRR3162170.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARSNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARSNX-09A-01R	RNA	EFO	SRS1284412	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARSNX-09A-01R SJTALL002048_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	41	SJTALL002048_D1_RNASEQ_1	SRX1571404		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARSNX-09A-01R SJTALL002048_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARSNX-09A-01R.fastq	SRR3162171	@dbgap@:reads/SRP011999/SRS1284412/SRX1571404/SRR3162171/SRR3162171.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARSNX-09A-01R.expression.txt	3			
TARGET-10-PARSNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARSNX-09A-01R	RNA	EFO	SRS1284412	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARSNX-09A-01R SJTALL002048_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	41	SJTALL002048_D1_RNASEQ_1	SRX1571404		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARSNX-09A-01R SJTALL002048_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARSNX-09A-01R.fastq	SRR3162171	@dbgap@:reads/SRP011999/SRS1284412/SRX1571404/SRR3162171/SRR3162171.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARSZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSZH-09A-01R	RNA	EFO	SRS602094	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSZH-09A-01R A32687 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32687	SRX543417	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARSZH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARSZH-09A-01R A32687 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2258-1./A32687.fastq	SRR1797125	@dbgap@:reads/SRP011999/SRS602094/SRX543417/SRR1797125/SRR1797125.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_1_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288046	@dbgap@:reads/SRP011999/SRS602094/SRX543417/SRR1288046/SRR1288046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARSZH-09A-01R.exon.quantification.txt	3			
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARSZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSZH-09A-01R	RNA	EFO	SRS602094	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSZH-09A-01R A32687 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32687	SRX543417	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARSZH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARSZH-09A-01R A32687 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2258-1./A32687.fastq	SRR1797125	@dbgap@:reads/SRP011999/SRS602094/SRX543417/SRR1797125/SRR1797125.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_1_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288046	@dbgap@:reads/SRP011999/SRS602094/SRX543417/SRR1288046/SRR1288046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARSZH-09A-01R.gene.quantification.txt	3			
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARSZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSZH-09A-01R	RNA	EFO	SRS602094	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSZH-09A-01R A32687 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32687	SRX543417	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARSZH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARSZH-09A-01R A32687 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2258-1./A32687.fastq	SRR1797125	@dbgap@:reads/SRP011999/SRS602094/SRX543417/SRR1797125/SRR1797125.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_1_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288046	@dbgap@:reads/SRP011999/SRS602094/SRX543417/SRR1288046/SRR1288046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARSZH-09A-01R.isoform.quantification.txt	3			
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARSZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSZH-09A-01R	RNA	EFO	SRS602094	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSZH-09A-01R A32687 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32687	SRX543417	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARSZH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARSZH-09A-01R A32687 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2258-1./A32687.fastq	SRR1797125	@dbgap@:reads/SRP011999/SRS602094/SRX543417/SRR1797125/SRR1797125.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_1_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288046	@dbgap@:reads/SRP011999/SRS602094/SRX543417/SRR1288046/SRR1288046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARSZH-09A-01R.fusion.vcf	3			
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARSZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSZH-09A-01R	RNA	EFO	SRS602094	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSZH-09A-01R A32687 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32687	SRX543417	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARSZH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARSZH-09A-01R A32687 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2258-1./A32687.fastq	SRR1797125	@dbgap@:reads/SRP011999/SRS602094/SRX543417/SRR1797125/SRR1797125.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_1_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288046	@dbgap@:reads/SRP011999/SRS602094/SRX543417/SRR1288046/SRR1288046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARSZH-09A-01R.indel.vcf	3			
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARSZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSZH-09A-01R	RNA	EFO	SRS602094	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSZH-09A-01R A32687 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32687	SRX543417	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARSZH-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARSZH-09A-01R A32687 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2258-1./A32687.fastq	SRR1797125	@dbgap@:reads/SRP011999/SRS602094/SRX543417/SRR1797125/SRR1797125.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_1_CGTACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288046	@dbgap@:reads/SRP011999/SRS602094/SRX543417/SRR1288046/SRR1288046.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARSZH-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARTBP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTBP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARTBP-09A-01R	RNA	EFO	SRS1284411	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARTBP-09A-01R SJALL015265_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	36.3	SJALL015265_D1_RNASEQ_1	SRX1571405		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARTBP-09A-01R SJALL015265_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARTBP-09A-01R.fastq	SRR3162172	@dbgap@:reads/SRP011999/SRS1284411/SRX1571405/SRR3162172/SRR3162172.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARTBP-09A-01R.expression.txt	3			
TARGET-10-PARTBP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTBP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARTBP-09A-01R	RNA	EFO	SRS1284411	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARTBP-09A-01R SJALL015265_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	36.3	SJALL015265_D1_RNASEQ_1	SRX1571405		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARTBP-09A-01R SJALL015265_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARTBP-09A-01R.fastq	SRR3162172	@dbgap@:reads/SRP011999/SRS1284411/SRX1571405/SRR3162172/SRR3162172.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARTJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARTJL-09A-02R	RNA	EFO	SRS602214	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARTJL-09A-02R A33621 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33621	SRX547664	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARTJL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARTJL-09A-02R A33621 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2196-1./A33621.fastq	SRR1797130	@dbgap@:reads/SRP011999/SRS602214/SRX547664/SRR1797130/SRR1797130.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed bases < 5Gb)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_4_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293054	@dbgap@:reads/SRP011999/SRS602214/SRX547664/SRR1293054/SRR1293054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARTJL-09A-02R.exon.quantification.txt	3			
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARTJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARTJL-09A-02R	RNA	EFO	SRS602214	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARTJL-09A-02R A33621 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33621	SRX547664	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARTJL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARTJL-09A-02R A33621 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2196-1./A33621.fastq	SRR1797130	@dbgap@:reads/SRP011999/SRS602214/SRX547664/SRR1797130/SRR1797130.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed bases < 5Gb)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_4_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293054	@dbgap@:reads/SRP011999/SRS602214/SRX547664/SRR1293054/SRR1293054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARTJL-09A-02R.gene.quantification.txt	3			
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARTJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARTJL-09A-02R	RNA	EFO	SRS602214	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARTJL-09A-02R A33621 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33621	SRX547664	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARTJL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARTJL-09A-02R A33621 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2196-1./A33621.fastq	SRR1797130	@dbgap@:reads/SRP011999/SRS602214/SRX547664/SRR1797130/SRR1797130.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed bases < 5Gb)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_4_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293054	@dbgap@:reads/SRP011999/SRS602214/SRX547664/SRR1293054/SRR1293054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARTJL-09A-02R.isoform.quantification.txt	3			
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARTJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARTJL-09A-02R	RNA	EFO	SRS602214	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARTJL-09A-02R A33621 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33621	SRX547664	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARTJL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARTJL-09A-02R A33621 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2196-1./A33621.fastq	SRR1797130	@dbgap@:reads/SRP011999/SRS602214/SRX547664/SRR1797130/SRR1797130.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed bases < 5Gb)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_4_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293054	@dbgap@:reads/SRP011999/SRS602214/SRX547664/SRR1293054/SRR1293054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARTJL-09A-02R.fusion.vcf	3			
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARTJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARTJL-09A-02R	RNA	EFO	SRS602214	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARTJL-09A-02R A33621 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33621	SRX547664	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARTJL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARTJL-09A-02R A33621 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2196-1./A33621.fastq	SRR1797130	@dbgap@:reads/SRP011999/SRS602214/SRX547664/SRR1797130/SRR1797130.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed bases < 5Gb)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_4_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293054	@dbgap@:reads/SRP011999/SRS602214/SRX547664/SRR1293054/SRR1293054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARTJL-09A-02R.indel.vcf	3			
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARTJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARTJL-09A-02R	RNA	EFO	SRS602214	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARTJL-09A-02R A33621 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33621	SRX547664	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARTJL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARTJL-09A-02R A33621 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2196-1./A33621.fastq	SRR1797130	@dbgap@:reads/SRP011999/SRS602214/SRX547664/SRR1797130/SRR1797130.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (chastity passed bases < 5Gb)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_4_CACGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293054	@dbgap@:reads/SRP011999/SRS602214/SRX547664/SRR1293054/SRR1293054.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARTJL-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARTKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARTKL-09A-02R	RNA	EFO	SRS602216	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARTKL-09A-02R A33630 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33630	SRX547669	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARTKL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARTKL-09A-02R A33630 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2201-1./A33630.fastq	SRR1797120	@dbgap@:reads/SRP011999/SRS602216/SRX547669/SRR1797120/SRR1797120.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_1_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293033	@dbgap@:reads/SRP011999/SRS602216/SRX547669/SRR1293033/SRR1293033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARTKL-09A-02R.exon.quantification.txt	3			
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARTKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARTKL-09A-02R	RNA	EFO	SRS602216	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARTKL-09A-02R A33630 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33630	SRX547669	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARTKL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARTKL-09A-02R A33630 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2201-1./A33630.fastq	SRR1797120	@dbgap@:reads/SRP011999/SRS602216/SRX547669/SRR1797120/SRR1797120.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_1_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293033	@dbgap@:reads/SRP011999/SRS602216/SRX547669/SRR1293033/SRR1293033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARTKL-09A-02R.gene.quantification.txt	3			
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARTKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARTKL-09A-02R	RNA	EFO	SRS602216	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARTKL-09A-02R A33630 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33630	SRX547669	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARTKL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARTKL-09A-02R A33630 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2201-1./A33630.fastq	SRR1797120	@dbgap@:reads/SRP011999/SRS602216/SRX547669/SRR1797120/SRR1797120.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_1_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293033	@dbgap@:reads/SRP011999/SRS602216/SRX547669/SRR1293033/SRR1293033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARTKL-09A-02R.isoform.quantification.txt	3			
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARTKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARTKL-09A-02R	RNA	EFO	SRS602216	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARTKL-09A-02R A33630 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33630	SRX547669	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARTKL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARTKL-09A-02R A33630 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2201-1./A33630.fastq	SRR1797120	@dbgap@:reads/SRP011999/SRS602216/SRX547669/SRR1797120/SRR1797120.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_1_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293033	@dbgap@:reads/SRP011999/SRS602216/SRX547669/SRR1293033/SRR1293033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARTKL-09A-02R.fusion.vcf	3			
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARTKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARTKL-09A-02R	RNA	EFO	SRS602216	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARTKL-09A-02R A33630 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33630	SRX547669	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARTKL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARTKL-09A-02R A33630 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2201-1./A33630.fastq	SRR1797120	@dbgap@:reads/SRP011999/SRS602216/SRX547669/SRR1797120/SRR1797120.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_1_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293033	@dbgap@:reads/SRP011999/SRS602216/SRX547669/SRR1293033/SRR1293033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARTKL-09A-02R.indel.vcf	3			
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARTKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARTKL-09A-02R	RNA	EFO	SRS602216	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARTKL-09A-02R A33630 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33630	SRX547669	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARTKL-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PARTKL-09A-02R A33630 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2201-1./A33630.fastq	SRR1797120	@dbgap@:reads/SRP011999/SRS602216/SRX547669/SRR1797120/SRR1797120.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BBACXX_1_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293033	@dbgap@:reads/SRP011999/SRS602216/SRX547669/SRR1293033/SRR1293033.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARTKL-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARTLY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTLY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARTLY-09A-01R	RNA	EFO	SRS1284410	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARTLY-09A-01R SJTALL171_E-TARGET-10-PARTLY-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	169	39.7	SJTALL171_E-TARGET-10-PARTLY-09A-01D	SRX1571406		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARTLY-09A-01R SJTALL171_E-TARGET-10-PARTLY-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARTLY-09A-01R.fastq	SRR3162182	@dbgap@:reads/SRP011999/SRS1284410/SRX1571406/SRR3162182/SRR3162182.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARTLY-09A-01R.expression.txt	3			
TARGET-10-PARTLY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTLY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARTLY-09A-01R	RNA	EFO	SRS1284410	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARTLY-09A-01R SJTALL171_E-TARGET-10-PARTLY-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	169	39.7	SJTALL171_E-TARGET-10-PARTLY-09A-01D	SRX1571406		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARTLY-09A-01R SJTALL171_E-TARGET-10-PARTLY-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARTLY-09A-01R.fastq	SRR3162182	@dbgap@:reads/SRP011999/SRS1284410/SRX1571406/SRR3162182/SRR3162182.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARTPW-09A-01R	RNA	EFO	SRS1284409	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARTPW-09A-01R SJALL015266_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	171	40.1	SJALL015266_D1_RNASEQ_1	SRX1571407		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARTPW-09A-01R SJALL015266_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARTPW-09A-01R.fastq	SRR3162183	@dbgap@:reads/SRP011999/SRS1284409/SRX1571407/SRR3162183/SRR3162183.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARTPW-09A-01R.expression.txt	3			
TARGET-10-PARTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARTPW-09A-01R	RNA	EFO	SRS1284409	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARTPW-09A-01R SJALL015266_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	171	40.1	SJALL015266_D1_RNASEQ_1	SRX1571407		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARTPW-09A-01R SJALL015266_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARTPW-09A-01R.fastq	SRR3162183	@dbgap@:reads/SRP011999/SRS1284409/SRX1571407/SRR3162183/SRR3162183.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARUBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUBK-03A-01R	RNA	EFO	SRS602145	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUBK-03A-01R A32751 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32751	SRX547572	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARUBK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARUBK-03A-01R A32751 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2272-1./A32751.fastq	SRR1797108	@dbgap@:reads/SRP011999/SRS602145/SRX547572/SRR1797108/SRR1797108.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_7_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292994	@dbgap@:reads/SRP011999/SRS602145/SRX547572/SRR1292994/SRR1292994.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARUBK-03A-01R.exon.quantification.txt	3			
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARUBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUBK-03A-01R	RNA	EFO	SRS602145	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUBK-03A-01R A32751 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32751	SRX547572	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARUBK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARUBK-03A-01R A32751 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2272-1./A32751.fastq	SRR1797108	@dbgap@:reads/SRP011999/SRS602145/SRX547572/SRR1797108/SRR1797108.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_7_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292994	@dbgap@:reads/SRP011999/SRS602145/SRX547572/SRR1292994/SRR1292994.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARUBK-03A-01R.gene.quantification.txt	3			
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARUBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUBK-03A-01R	RNA	EFO	SRS602145	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUBK-03A-01R A32751 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32751	SRX547572	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARUBK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARUBK-03A-01R A32751 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2272-1./A32751.fastq	SRR1797108	@dbgap@:reads/SRP011999/SRS602145/SRX547572/SRR1797108/SRR1797108.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_7_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292994	@dbgap@:reads/SRP011999/SRS602145/SRX547572/SRR1292994/SRR1292994.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARUBK-03A-01R.isoform.quantification.txt	3			
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARUBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUBK-03A-01R	RNA	EFO	SRS602145	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUBK-03A-01R A32751 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32751	SRX547572	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARUBK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARUBK-03A-01R A32751 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2272-1./A32751.fastq	SRR1797108	@dbgap@:reads/SRP011999/SRS602145/SRX547572/SRR1797108/SRR1797108.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_7_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292994	@dbgap@:reads/SRP011999/SRS602145/SRX547572/SRR1292994/SRR1292994.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARUBK-03A-01R.fusion.vcf	3			
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARUBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUBK-03A-01R	RNA	EFO	SRS602145	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUBK-03A-01R A32751 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32751	SRX547572	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARUBK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARUBK-03A-01R A32751 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2272-1./A32751.fastq	SRR1797108	@dbgap@:reads/SRP011999/SRS602145/SRX547572/SRR1797108/SRR1797108.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_7_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292994	@dbgap@:reads/SRP011999/SRS602145/SRX547572/SRR1292994/SRR1292994.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARUBK-03A-01R.indel.vcf	3			
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARUBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUBK-03A-01R	RNA	EFO	SRS602145	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUBK-03A-01R A32751 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32751	SRX547572	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARUBK-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARUBK-03A-01R A32751 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2272-1./A32751.fastq	SRR1797108	@dbgap@:reads/SRP011999/SRS602145/SRX547572/SRR1797108/SRR1797108.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_7_AAACAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292994	@dbgap@:reads/SRP011999/SRS602145/SRX547572/SRR1292994/SRR1292994.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARUBK-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARUEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUEU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARUEU-09A-01R	RNA	EFO	SRS1284407	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARUEU-09A-01R SJALL015267_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	42	SJALL015267_D1_RNASEQ_1	SRX1571408		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARUEU-09A-01R SJALL015267_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARUEU-09A-01R.fastq	SRR3162184	@dbgap@:reads/SRP011999/SRS1284407/SRX1571408/SRR3162184/SRR3162184.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARUEU-09A-01R.expression.txt	3			
TARGET-10-PARUEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUEU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARUEU-09A-01R	RNA	EFO	SRS1284407	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARUEU-09A-01R SJALL015267_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	42	SJALL015267_D1_RNASEQ_1	SRX1571408		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARUEU-09A-01R SJALL015267_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARUEU-09A-01R.fastq	SRR3162184	@dbgap@:reads/SRP011999/SRS1284407/SRX1571408/SRR3162184/SRR3162184.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARUGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUGP-09A-01R	RNA	EFO	SRS602159	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUGP-09A-01R A32752 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32752	SRX547571	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARUGP-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PARUGP-09A-01R A32752 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2291-1..1/A32752.fastq	SRR1791084	@dbgap@:reads/SRP011999/SRS602159/SRX547571/SRR1791084/SRR1791084.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_2_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292977	@dbgap@:reads/SRP011999/SRS602159/SRX547571/SRR1292977/SRR1292977.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARUGP-09A-01R.exon.quantification.txt	3			
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARUGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUGP-09A-01R	RNA	EFO	SRS602159	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUGP-09A-01R A32752 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32752	SRX547571	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARUGP-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PARUGP-09A-01R A32752 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2291-1..1/A32752.fastq	SRR1791084	@dbgap@:reads/SRP011999/SRS602159/SRX547571/SRR1791084/SRR1791084.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_2_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292977	@dbgap@:reads/SRP011999/SRS602159/SRX547571/SRR1292977/SRR1292977.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARUGP-09A-01R.gene.quantification.txt	3			
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARUGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUGP-09A-01R	RNA	EFO	SRS602159	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUGP-09A-01R A32752 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32752	SRX547571	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARUGP-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PARUGP-09A-01R A32752 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2291-1..1/A32752.fastq	SRR1791084	@dbgap@:reads/SRP011999/SRS602159/SRX547571/SRR1791084/SRR1791084.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_2_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292977	@dbgap@:reads/SRP011999/SRS602159/SRX547571/SRR1292977/SRR1292977.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARUGP-09A-01R.isoform.quantification.txt	3			
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARUGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUGP-09A-01R	RNA	EFO	SRS602159	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUGP-09A-01R A32752 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32752	SRX547571	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARUGP-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PARUGP-09A-01R A32752 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2291-1..1/A32752.fastq	SRR1791084	@dbgap@:reads/SRP011999/SRS602159/SRX547571/SRR1791084/SRR1791084.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_2_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292977	@dbgap@:reads/SRP011999/SRS602159/SRX547571/SRR1292977/SRR1292977.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARUGP-09A-01R.fusion.vcf	3			
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARUGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUGP-09A-01R	RNA	EFO	SRS602159	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUGP-09A-01R A32752 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32752	SRX547571	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARUGP-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PARUGP-09A-01R A32752 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2291-1..1/A32752.fastq	SRR1791084	@dbgap@:reads/SRP011999/SRS602159/SRX547571/SRR1791084/SRR1791084.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_2_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292977	@dbgap@:reads/SRP011999/SRS602159/SRX547571/SRR1292977/SRR1292977.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARUGP-09A-01R.indel.vcf	3			
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARUGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUGP-09A-01R	RNA	EFO	SRS602159	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUGP-09A-01R A32752 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32752	SRX547571	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARUGP-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PARUGP-09A-01R A32752 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2291-1..1/A32752.fastq	SRR1791084	@dbgap@:reads/SRP011999/SRS602159/SRX547571/SRR1791084/SRR1791084.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_2_AAGGAC_withJunctionsOnGenome_dupsFlagged.bam	SRR1292977	@dbgap@:reads/SRP011999/SRS602159/SRX547571/SRR1292977/SRR1292977.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARUGP-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARUKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUKW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARUKW-09A-01R	RNA	EFO	SRS1284408	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARUKW-09A-01R SJALL015273_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	40.7	SJALL015273_D1_RNASEQ_1	SRX1571409		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARUKW-09A-01R SJALL015273_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARUKW-09A-01R.fastq	SRR3162185	@dbgap@:reads/SRP011999/SRS1284408/SRX1571409/SRR3162185/SRR3162185.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARUKW-09A-01R.expression.txt	3			
TARGET-10-PARUKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUKW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARUKW-09A-01R	RNA	EFO	SRS1284408	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARUKW-09A-01R SJALL015273_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	40.7	SJALL015273_D1_RNASEQ_1	SRX1571409		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARUKW-09A-01R SJALL015273_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARUKW-09A-01R.fastq	SRR3162185	@dbgap@:reads/SRP011999/SRS1284408/SRX1571409/SRR3162185/SRR3162185.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARVEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARVEI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARVEI-09A-01R	RNA	EFO	SRS1284406	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARVEI-09A-01R SJALL015282_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	36.3	SJALL015282_D1_RNASEQ_1	SRX1571410		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARVEI-09A-01R SJALL015282_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARVEI-09A-01R.fastq	SRR3162186	@dbgap@:reads/SRP011999/SRS1284406/SRX1571410/SRR3162186/SRR3162186.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARVEI-09A-01R.expression.txt	3			
TARGET-10-PARVEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARVEI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARVEI-09A-01R	RNA	EFO	SRS1284406	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARVEI-09A-01R SJALL015282_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	36.3	SJALL015282_D1_RNASEQ_1	SRX1571410		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARVEI-09A-01R SJALL015282_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARVEI-09A-01R.fastq	SRR3162186	@dbgap@:reads/SRP011999/SRS1284406/SRX1571410/SRR3162186/SRR3162186.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARVHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARVHY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARVHY-09A-01R	RNA	EFO	SRS1284405	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARVHY-09A-01R SJTALL002030_D1-TARGET-10-PARVHY-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	169	39.7	SJTALL002030_D1-TARGET-10-PARVHY-09A-01	SRX1571411		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARVHY-09A-01R SJTALL002030_D1-TARGET-10-PARVHY-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARVHY-09A-01R.fastq	SRR3162187	@dbgap@:reads/SRP011999/SRS1284405/SRX1571411/SRR3162187/SRR3162187.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARVHY-09A-01R.expression.txt	3			
TARGET-10-PARVHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARVHY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARVHY-09A-01R	RNA	EFO	SRS1284405	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARVHY-09A-01R SJTALL002030_D1-TARGET-10-PARVHY-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	169	39.7	SJTALL002030_D1-TARGET-10-PARVHY-09A-01	SRX1571411		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARVHY-09A-01R SJTALL002030_D1-TARGET-10-PARVHY-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARVHY-09A-01R.fastq	SRR3162187	@dbgap@:reads/SRP011999/SRS1284405/SRX1571411/SRR3162187/SRR3162187.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARVMR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARVMR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARVMR-09A-01R	RNA	EFO	SRS1284403	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARVMR-09A-01R SJALL016429_D1-TARGET-10-PARVMR-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	35.4	SJALL016429_D1-TARGET-10-PARVMR-09A-01	SRX1571412		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARVMR-09A-01R SJALL016429_D1-TARGET-10-PARVMR-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARVMR-09A-01R.fastq	SRR3162188	@dbgap@:reads/SRP011999/SRS1284403/SRX1571412/SRR3162188/SRR3162188.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARVMR-09A-01R.expression.txt	3			
TARGET-10-PARVMR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARVMR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARVMR-09A-01R	RNA	EFO	SRS1284403	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARVMR-09A-01R SJALL016429_D1-TARGET-10-PARVMR-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	35.4	SJALL016429_D1-TARGET-10-PARVMR-09A-01	SRX1571412		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARVMR-09A-01R SJALL016429_D1-TARGET-10-PARVMR-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARVMR-09A-01R.fastq	SRR3162188	@dbgap@:reads/SRP011999/SRS1284403/SRX1571412/SRR3162188/SRR3162188.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARVWD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARVWD-09A-01R	RNA	EFO	SRS602110	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARVWD-09A-01R A32753 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32753	SRX547611	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARVWD-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARVWD-09A-01R A32753 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2274-1./A32753.fastq	SRR1797098	@dbgap@:reads/SRP011999/SRS602110/SRX547611/SRR1797098/SRR1797098.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_1_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293003	@dbgap@:reads/SRP011999/SRS602110/SRX547611/SRR1293003/SRR1293003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARVWD-09A-01R.exon.quantification.txt	3			
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARVWD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARVWD-09A-01R	RNA	EFO	SRS602110	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARVWD-09A-01R A32753 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32753	SRX547611	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARVWD-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARVWD-09A-01R A32753 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2274-1./A32753.fastq	SRR1797098	@dbgap@:reads/SRP011999/SRS602110/SRX547611/SRR1797098/SRR1797098.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_1_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293003	@dbgap@:reads/SRP011999/SRS602110/SRX547611/SRR1293003/SRR1293003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARVWD-09A-01R.gene.quantification.txt	3			
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARVWD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARVWD-09A-01R	RNA	EFO	SRS602110	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARVWD-09A-01R A32753 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32753	SRX547611	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARVWD-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARVWD-09A-01R A32753 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2274-1./A32753.fastq	SRR1797098	@dbgap@:reads/SRP011999/SRS602110/SRX547611/SRR1797098/SRR1797098.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_1_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293003	@dbgap@:reads/SRP011999/SRS602110/SRX547611/SRR1293003/SRR1293003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARVWD-09A-01R.isoform.quantification.txt	3			
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARVWD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARVWD-09A-01R	RNA	EFO	SRS602110	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARVWD-09A-01R A32753 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32753	SRX547611	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARVWD-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARVWD-09A-01R A32753 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2274-1./A32753.fastq	SRR1797098	@dbgap@:reads/SRP011999/SRS602110/SRX547611/SRR1797098/SRR1797098.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_1_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293003	@dbgap@:reads/SRP011999/SRS602110/SRX547611/SRR1293003/SRR1293003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARVWD-09A-01R.fusion.vcf	3			
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARVWD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARVWD-09A-01R	RNA	EFO	SRS602110	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARVWD-09A-01R A32753 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32753	SRX547611	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARVWD-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARVWD-09A-01R A32753 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2274-1./A32753.fastq	SRR1797098	@dbgap@:reads/SRP011999/SRS602110/SRX547611/SRR1797098/SRR1797098.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_1_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293003	@dbgap@:reads/SRP011999/SRS602110/SRX547611/SRR1293003/SRR1293003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARVWD-09A-01R.indel.vcf	3			
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARVWD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARVWD-09A-01R	RNA	EFO	SRS602110	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARVWD-09A-01R A32753 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32753	SRX547611	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARVWD-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARVWD-09A-01R A32753 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2274-1./A32753.fastq	SRR1797098	@dbgap@:reads/SRP011999/SRS602110/SRX547611/SRR1797098/SRR1797098.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_1_ACTGAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1293003	@dbgap@:reads/SRP011999/SRS602110/SRX547611/SRR1293003/SRR1293003.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARVWD-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARWDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARWDM-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARWDM-09B-01R	RNA	EFO	SRS1284404	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARWDM-09B-01R SJTALL002258_D1-TARGET-10-PARWDM-09B-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	35.8	SJTALL002258_D1-TARGET-10-PARWDM-09B-01	SRX1571413		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARWDM-09B-01R SJTALL002258_D1-TARGET-10-PARWDM-09B-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARWDM-09B-01R.fastq	SRR3162195	@dbgap@:reads/SRP011999/SRS1284404/SRX1571413/SRR3162195/SRR3162195.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARWDM-09B-01R.expression.txt	3			
TARGET-10-PARWDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARWDM-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARWDM-09B-01R	RNA	EFO	SRS1284404	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARWDM-09B-01R SJTALL002258_D1-TARGET-10-PARWDM-09B-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	35.8	SJTALL002258_D1-TARGET-10-PARWDM-09B-01	SRX1571413		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARWDM-09B-01R SJTALL002258_D1-TARGET-10-PARWDM-09B-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARWDM-09B-01R.fastq	SRR3162195	@dbgap@:reads/SRP011999/SRS1284404/SRX1571413/SRR3162195/SRR3162195.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARWID	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARWID-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARWID-09A-01R	RNA	EFO	SRS1284402	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARWID-09A-01R SJALL015283_D1-TARGET-10-PARWID-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	36.4	SJALL015283_D1-TARGET-10-PARWID-09A-01D	SRX1571414		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARWID-09A-01R SJALL015283_D1-TARGET-10-PARWID-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARWID-09A-01R.fastq	SRR3162196	@dbgap@:reads/SRP011999/SRS1284402/SRX1571414/SRR3162196/SRR3162196.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARWID-09A-01R.expression.txt	3			
TARGET-10-PARWID	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARWID-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARWID-09A-01R	RNA	EFO	SRS1284402	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARWID-09A-01R SJALL015283_D1-TARGET-10-PARWID-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	36.4	SJALL015283_D1-TARGET-10-PARWID-09A-01D	SRX1571414		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARWID-09A-01R SJALL015283_D1-TARGET-10-PARWID-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARWID-09A-01R.fastq	SRR3162196	@dbgap@:reads/SRP011999/SRS1284402/SRX1571414/SRR3162196/SRR3162196.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARWLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARWLP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARWLP-09A-01R	RNA	EFO	SRS1284401	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARWLP-09A-01R SJALL015276_D1-TARGET-10-PARWLP-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	159	34	SJALL015276_D1-TARGET-10-PARWLP-09A-01D	SRX1571415		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARWLP-09A-01R SJALL015276_D1-TARGET-10-PARWLP-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARWLP-09A-01R.fastq	SRR3162197	@dbgap@:reads/SRP011999/SRS1284401/SRX1571415/SRR3162197/SRR3162197.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARWLP-09A-01R.expression.txt	3			
TARGET-10-PARWLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARWLP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARWLP-09A-01R	RNA	EFO	SRS1284401	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARWLP-09A-01R SJALL015276_D1-TARGET-10-PARWLP-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	159	34	SJALL015276_D1-TARGET-10-PARWLP-09A-01D	SRX1571415		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARWLP-09A-01R SJALL015276_D1-TARGET-10-PARWLP-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARWLP-09A-01R.fastq	SRR3162197	@dbgap@:reads/SRP011999/SRS1284401/SRX1571415/SRR3162197/SRR3162197.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARWMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARWMF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARWMF-09A-01R	RNA	EFO	SRS1284400	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARWMF-09A-01R SJALL015252_D1-TARGET-10-PARWMF-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	35.3	SJALL015252_D1-TARGET-10-PARWMF-09A-01D	SRX1571416		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARWMF-09A-01R SJALL015252_D1-TARGET-10-PARWMF-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARWMF-09A-01R.fastq	SRR3162198	@dbgap@:reads/SRP011999/SRS1284400/SRX1571416/SRR3162198/SRR3162198.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARWMF-09A-01R.expression.txt	3			
TARGET-10-PARWMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARWMF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARWMF-09A-01R	RNA	EFO	SRS1284400	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARWMF-09A-01R SJALL015252_D1-TARGET-10-PARWMF-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	35.3	SJALL015252_D1-TARGET-10-PARWMF-09A-01D	SRX1571416		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARWMF-09A-01R SJALL015252_D1-TARGET-10-PARWMF-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARWMF-09A-01R.fastq	SRR3162198	@dbgap@:reads/SRP011999/SRS1284400/SRX1571416/SRR3162198/SRR3162198.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARWNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARWNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARWNW-09A-01R	RNA	EFO	SRS1284399	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARWNW-09A-01R SJTALL002045_D1-TARGET-10-PARWNW-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	34.6	SJTALL002045_D1-TARGET-10-PARWNW-09A-01	SRX1571417		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARWNW-09A-01R SJTALL002045_D1-TARGET-10-PARWNW-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARWNW-09A-01R.fastq	SRR3162199	@dbgap@:reads/SRP011999/SRS1284399/SRX1571417/SRR3162199/SRR3162199.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARWNW-09A-01R.expression.txt	3			
TARGET-10-PARWNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARWNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARWNW-09A-01R	RNA	EFO	SRS1284399	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARWNW-09A-01R SJTALL002045_D1-TARGET-10-PARWNW-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	34.6	SJTALL002045_D1-TARGET-10-PARWNW-09A-01	SRX1571417		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARWNW-09A-01R SJTALL002045_D1-TARGET-10-PARWNW-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARWNW-09A-01R.fastq	SRR3162199	@dbgap@:reads/SRP011999/SRS1284399/SRX1571417/SRR3162199/SRR3162199.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARWVN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWVN-03A-01R	RNA	EFO	SRS602124	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWVN-03A-01R A32774 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32774	SRX547639	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARWVN-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PARWVN-03A-01R A32774 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2288-1./A32774.fastq	SRR1791085	@dbgap@:reads/SRP011999/SRS602124/SRX547639/SRR1791085/SRR1791085.sra	1	"HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 55%, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_7_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292972	@dbgap@:reads/SRP011999/SRS602124/SRX547639/SRR1292972/SRR1292972.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARWVN-03A-01R.exon.quantification.txt	3			
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARWVN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWVN-03A-01R	RNA	EFO	SRS602124	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWVN-03A-01R A32774 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32774	SRX547639	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARWVN-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PARWVN-03A-01R A32774 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2288-1./A32774.fastq	SRR1791085	@dbgap@:reads/SRP011999/SRS602124/SRX547639/SRR1791085/SRR1791085.sra	1	"HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 55%, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_7_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292972	@dbgap@:reads/SRP011999/SRS602124/SRX547639/SRR1292972/SRR1292972.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARWVN-03A-01R.gene.quantification.txt	3			
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARWVN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWVN-03A-01R	RNA	EFO	SRS602124	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWVN-03A-01R A32774 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32774	SRX547639	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARWVN-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PARWVN-03A-01R A32774 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2288-1./A32774.fastq	SRR1791085	@dbgap@:reads/SRP011999/SRS602124/SRX547639/SRR1791085/SRR1791085.sra	1	"HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 55%, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_7_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292972	@dbgap@:reads/SRP011999/SRS602124/SRX547639/SRR1292972/SRR1292972.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARWVN-03A-01R.isoform.quantification.txt	3			
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARWVN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWVN-03A-01R	RNA	EFO	SRS602124	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWVN-03A-01R A32774 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32774	SRX547639	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARWVN-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PARWVN-03A-01R A32774 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2288-1./A32774.fastq	SRR1791085	@dbgap@:reads/SRP011999/SRS602124/SRX547639/SRR1791085/SRR1791085.sra	1	"HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 55%, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_7_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292972	@dbgap@:reads/SRP011999/SRS602124/SRX547639/SRR1292972/SRR1292972.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARWVN-03A-01R.fusion.vcf	3			
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARWVN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWVN-03A-01R	RNA	EFO	SRS602124	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWVN-03A-01R A32774 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32774	SRX547639	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARWVN-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PARWVN-03A-01R A32774 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2288-1./A32774.fastq	SRR1791085	@dbgap@:reads/SRP011999/SRS602124/SRX547639/SRR1791085/SRR1791085.sra	1	"HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 55%, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_7_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292972	@dbgap@:reads/SRP011999/SRS602124/SRX547639/SRR1292972/SRR1292972.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARWVN-03A-01R.indel.vcf	3			
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARWVN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWVN-03A-01R	RNA	EFO	SRS602124	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWVN-03A-01R A32774 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32774	SRX547639	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARWVN-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PARWVN-03A-01R A32774 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2288-1./A32774.fastq	SRR1791085	@dbgap@:reads/SRP011999/SRS602124/SRX547639/SRR1791085/SRR1791085.sra	1	"HIGH NON-GENIC CONTENT (gene with 1-5x coverage > 55%, intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_7_AGATAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292972	@dbgap@:reads/SRP011999/SRS602124/SRX547639/SRR1292972/SRR1292972.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARWVN-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARXHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARXHT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARXHT-03A-01R	RNA	EFO	SRS1284398	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARXHT-03A-01R SJTALL002049_D1-TARGET-10-PARXHT-03A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	154	32	SJTALL002049_D1-TARGET-10-PARXHT-03A-01	SRX1571418		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARXHT-03A-01R SJTALL002049_D1-TARGET-10-PARXHT-03A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARXHT-03A-01R.fastq	SRR3162200	@dbgap@:reads/SRP011999/SRS1284398/SRX1571418/SRR3162200/SRR3162200.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARXHT-03A-01R.expression.txt	3			
TARGET-10-PARXHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARXHT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARXHT-03A-01R	RNA	EFO	SRS1284398	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARXHT-03A-01R SJTALL002049_D1-TARGET-10-PARXHT-03A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	154	32	SJTALL002049_D1-TARGET-10-PARXHT-03A-01	SRX1571418		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARXHT-03A-01R SJTALL002049_D1-TARGET-10-PARXHT-03A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARXHT-03A-01R.fastq	SRR3162200	@dbgap@:reads/SRP011999/SRS1284398/SRX1571418/SRR3162200/SRR3162200.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARXLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARXLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARXLS-09A-01R	RNA	EFO	SRS1284397	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARXLS-09A-01R SJALL015253_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	175	42.1	SJALL015253_D1_RNASEQ_1	SRX1571419		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARXLS-09A-01R SJALL015253_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARXLS-09A-01R.fastq	SRR3162201	@dbgap@:reads/SRP011999/SRS1284397/SRX1571419/SRR3162201/SRR3162201.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARXLS-09A-01R.expression.txt	3			
TARGET-10-PARXLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARXLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARXLS-09A-01R	RNA	EFO	SRS1284397	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARXLS-09A-01R SJALL015253_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	175	42.1	SJALL015253_D1_RNASEQ_1	SRX1571419		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARXLS-09A-01R SJALL015253_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARXLS-09A-01R.fastq	SRR3162201	@dbgap@:reads/SRP011999/SRS1284397/SRX1571419/SRR3162201/SRR3162201.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARXMC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXMC-04A-02R	RNA	EFO	SRS602239	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXMC-04A-02R A33623 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33623	SRX547685	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARXMC-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARXMC-04A-02R A33623 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2189-1./A33623.fastq	SRR1791029	@dbgap@:reads/SRP011999/SRS602239/SRX547685/SRR1791029/SRR1791029.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_5_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293032	@dbgap@:reads/SRP011999/SRS602239/SRX547685/SRR1293032/SRR1293032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARXMC-04A-02R.exon.quantification.txt	3			
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARXMC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXMC-04A-02R	RNA	EFO	SRS602239	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXMC-04A-02R A33623 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33623	SRX547685	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARXMC-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARXMC-04A-02R A33623 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2189-1./A33623.fastq	SRR1791029	@dbgap@:reads/SRP011999/SRS602239/SRX547685/SRR1791029/SRR1791029.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_5_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293032	@dbgap@:reads/SRP011999/SRS602239/SRX547685/SRR1293032/SRR1293032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARXMC-04A-02R.gene.quantification.txt	3			
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARXMC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXMC-04A-02R	RNA	EFO	SRS602239	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXMC-04A-02R A33623 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33623	SRX547685	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARXMC-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARXMC-04A-02R A33623 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2189-1./A33623.fastq	SRR1791029	@dbgap@:reads/SRP011999/SRS602239/SRX547685/SRR1791029/SRR1791029.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_5_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293032	@dbgap@:reads/SRP011999/SRS602239/SRX547685/SRR1293032/SRR1293032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARXMC-04A-02R.isoform.quantification.txt	3			
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARXMC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXMC-04A-02R	RNA	EFO	SRS602239	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXMC-04A-02R A33623 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33623	SRX547685	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARXMC-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARXMC-04A-02R A33623 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2189-1./A33623.fastq	SRR1791029	@dbgap@:reads/SRP011999/SRS602239/SRX547685/SRR1791029/SRR1791029.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_5_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293032	@dbgap@:reads/SRP011999/SRS602239/SRX547685/SRR1293032/SRR1293032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARXMC-04A-02R.fusion.vcf	3			
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARXMC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXMC-04A-02R	RNA	EFO	SRS602239	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXMC-04A-02R A33623 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33623	SRX547685	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARXMC-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARXMC-04A-02R A33623 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2189-1./A33623.fastq	SRR1791029	@dbgap@:reads/SRP011999/SRS602239/SRX547685/SRR1791029/SRR1791029.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_5_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293032	@dbgap@:reads/SRP011999/SRS602239/SRX547685/SRR1293032/SRR1293032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARXMC-04A-02R.indel.vcf	3			
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARXMC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXMC-04A-02R	RNA	EFO	SRS602239	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXMC-04A-02R A33623 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33623	SRX547685	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARXMC-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PARXMC-04A-02R A33623 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2189-1./A33623.fastq	SRR1791029	@dbgap@:reads/SRP011999/SRS602239/SRX547685/SRR1791029/SRR1791029.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_5_CTGCTG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293032	@dbgap@:reads/SRP011999/SRS602239/SRX547685/SRR1293032/SRR1293032.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARXMC-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARXMC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXMC-09A-01R	RNA	EFO	SRS602185	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXMC-09A-01R A32756 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32756	SRX547598	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARXMC-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARXMC-09A-01R A32756 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2274-1./A32756.fastq	SRR1797086	@dbgap@:reads/SRP011999/SRS602185/SRX547598/SRR1797086/SRR1797086.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_1_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292951	@dbgap@:reads/SRP011999/SRS602185/SRX547598/SRR1292951/SRR1292951.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARXMC-09A-01R.exon.quantification.txt	3			
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARXMC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXMC-09A-01R	RNA	EFO	SRS602185	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXMC-09A-01R A32756 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32756	SRX547598	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARXMC-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARXMC-09A-01R A32756 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2274-1./A32756.fastq	SRR1797086	@dbgap@:reads/SRP011999/SRS602185/SRX547598/SRR1797086/SRR1797086.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_1_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292951	@dbgap@:reads/SRP011999/SRS602185/SRX547598/SRR1292951/SRR1292951.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARXMC-09A-01R.gene.quantification.txt	3			
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARXMC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXMC-09A-01R	RNA	EFO	SRS602185	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXMC-09A-01R A32756 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32756	SRX547598	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARXMC-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARXMC-09A-01R A32756 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2274-1./A32756.fastq	SRR1797086	@dbgap@:reads/SRP011999/SRS602185/SRX547598/SRR1797086/SRR1797086.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_1_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292951	@dbgap@:reads/SRP011999/SRS602185/SRX547598/SRR1292951/SRR1292951.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PARXMC-09A-01R.isoform.quantification.txt	3			
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARXMC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXMC-09A-01R	RNA	EFO	SRS602185	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXMC-09A-01R A32756 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32756	SRX547598	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARXMC-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARXMC-09A-01R A32756 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2274-1./A32756.fastq	SRR1797086	@dbgap@:reads/SRP011999/SRS602185/SRX547598/SRR1797086/SRR1797086.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_1_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292951	@dbgap@:reads/SRP011999/SRS602185/SRX547598/SRR1292951/SRR1292951.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARXMC-09A-01R.fusion.vcf	3			
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARXMC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXMC-09A-01R	RNA	EFO	SRS602185	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXMC-09A-01R A32756 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32756	SRX547598	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARXMC-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARXMC-09A-01R A32756 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2274-1./A32756.fastq	SRR1797086	@dbgap@:reads/SRP011999/SRS602185/SRX547598/SRR1797086/SRR1797086.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_1_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292951	@dbgap@:reads/SRP011999/SRS602185/SRX547598/SRR1292951/SRR1292951.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PARXMC-09A-01R.indel.vcf	3			
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARXMC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXMC-09A-01R	RNA	EFO	SRS602185	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXMC-09A-01R A32756 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32756	SRX547598	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PARXMC-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PARXMC-09A-01R A32756 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2274-1./A32756.fastq	SRR1797086	@dbgap@:reads/SRP011999/SRS602185/SRX547598/SRR1797086/SRR1797086.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GHVACXX_1_CCGCAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292951	@dbgap@:reads/SRP011999/SRS602185/SRX547598/SRR1292951/SRR1292951.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PARXMC-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PARXMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARXMV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARXMV-03A-01R	RNA	EFO	SRS1284396	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARXMV-03A-01R SJTALL022653_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	175	42.7	SJTALL022653_D2_RNASEQ_1	SRX1571420		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARXMV-03A-01R SJTALL022653_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARXMV-03A-01R.fastq	SRR3162202	@dbgap@:reads/SRP011999/SRS1284396/SRX1571420/SRR3162202/SRR3162202.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARXMV-03A-01R.expression.txt	3			
TARGET-10-PARXMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARXMV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARXMV-03A-01R	RNA	EFO	SRS1284396	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARXMV-03A-01R SJTALL022653_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	175	42.7	SJTALL022653_D2_RNASEQ_1	SRX1571420		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARXMV-03A-01R SJTALL022653_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARXMV-03A-01R.fastq	SRR3162202	@dbgap@:reads/SRP011999/SRS1284396/SRX1571420/SRR3162202/SRR3162202.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARXVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARXVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARXVS-09A-01R	RNA	EFO	SRS1284394	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARXVS-09A-01R SJTALL002060_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	37.8	SJTALL002060_D1_RNASEQ_1	SRX1571421		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARXVS-09A-01R SJTALL002060_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARXVS-09A-01R.fastq	SRR3162203	@dbgap@:reads/SRP011999/SRS1284394/SRX1571421/SRR3162203/SRR3162203.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARXVS-09A-01R.expression.txt	3			
TARGET-10-PARXVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARXVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARXVS-09A-01R	RNA	EFO	SRS1284394	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARXVS-09A-01R SJTALL002060_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	37.8	SJTALL002060_D1_RNASEQ_1	SRX1571421		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARXVS-09A-01R SJTALL002060_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARXVS-09A-01R.fastq	SRR3162203	@dbgap@:reads/SRP011999/SRS1284394/SRX1571421/SRR3162203/SRR3162203.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PARYGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARYGI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARYGI-03A-01R	RNA	EFO	SRS1284395	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARYGI-03A-01R SJALL015254_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	38.2	SJALL015254_D1_RNASEQ_1	SRX1571422		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARYGI-03A-01R SJALL015254_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARYGI-03A-01R.fastq	SRR3162204	@dbgap@:reads/SRP011999/SRS1284395/SRX1571422/SRR3162204/SRR3162204.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PARYGI-03A-01R.expression.txt	3			
TARGET-10-PARYGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARYGI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PARYGI-03A-01R	RNA	EFO	SRS1284395	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PARYGI-03A-01R SJALL015254_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	38.2	SJALL015254_D1_RNASEQ_1	SRX1571422		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PARYGI-03A-01R SJALL015254_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PARYGI-03A-01R.fastq	SRR3162204	@dbgap@:reads/SRP011999/SRS1284395/SRX1571422/SRR3162204/SRR3162204.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-01R	RNA	EFO	SRS602028	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-01R A32609 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32609	SRX543442	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASCIU-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PASCIU-03A-01R A32609 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2242-1./A32609.fastq	SRR1797087	@dbgap@:reads/SRP011999/SRS602028/SRX543442/SRR1797087/SRR1797087.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_1_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288081	@dbgap@:reads/SRP011999/SRS602028/SRX543442/SRR1288081/SRR1288081.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASCIU-03A-01R.exon.quantification.txt	3			
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-01R	RNA	EFO	SRS602028	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-01R A32609 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32609	SRX543442	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASCIU-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PASCIU-03A-01R A32609 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2242-1./A32609.fastq	SRR1797087	@dbgap@:reads/SRP011999/SRS602028/SRX543442/SRR1797087/SRR1797087.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_1_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288081	@dbgap@:reads/SRP011999/SRS602028/SRX543442/SRR1288081/SRR1288081.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASCIU-03A-01R.gene.quantification.txt	3			
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-01R	RNA	EFO	SRS602028	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-01R A32609 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32609	SRX543442	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASCIU-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PASCIU-03A-01R A32609 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2242-1./A32609.fastq	SRR1797087	@dbgap@:reads/SRP011999/SRS602028/SRX543442/SRR1797087/SRR1797087.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_1_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288081	@dbgap@:reads/SRP011999/SRS602028/SRX543442/SRR1288081/SRR1288081.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASCIU-03A-01R.isoform.quantification.txt	3			
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-01R	RNA	EFO	SRS602028	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-01R A32609 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32609	SRX543442	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASCIU-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PASCIU-03A-01R A32609 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2242-1./A32609.fastq	SRR1797087	@dbgap@:reads/SRP011999/SRS602028/SRX543442/SRR1797087/SRR1797087.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_1_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288081	@dbgap@:reads/SRP011999/SRS602028/SRX543442/SRR1288081/SRR1288081.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASCIU-03A-01R.fusion.vcf	3			
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-01R	RNA	EFO	SRS602028	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-01R A32609 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32609	SRX543442	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASCIU-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PASCIU-03A-01R A32609 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2242-1./A32609.fastq	SRR1797087	@dbgap@:reads/SRP011999/SRS602028/SRX543442/SRR1797087/SRR1797087.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_1_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288081	@dbgap@:reads/SRP011999/SRS602028/SRX543442/SRR1288081/SRR1288081.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASCIU-03A-01R.indel.vcf	3			
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-01R	RNA	EFO	SRS602028	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-01R A32609 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32609	SRX543442	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASCIU-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PASCIU-03A-01R A32609 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2242-1./A32609.fastq	SRR1797087	@dbgap@:reads/SRP011999/SRS602028/SRX543442/SRR1797087/SRR1797087.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3FG2ACXX_1_ATCACG_withJunctionsOnGenome_dupsFlagged.bam	SRR1288081	@dbgap@:reads/SRP011999/SRS602028/SRX543442/SRR1288081/SRR1288081.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PASCIU-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-02R	RNA	EFO	SRS2416204	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-02R A61069 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61069	SRX3073864	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASCIU-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PASCIU-03A-02R A61069 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4507-1./A61069.fastq	SRR5912872	@dbgap@:reads/SRP011999/SRS2416204/SRX3073864/SRR5912872/SRR5912872.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASCIU-03A-02R.exon.quantification.txt	3			
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-02R	RNA	EFO	SRS2416204	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-02R A61069 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61069	SRX3073864	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASCIU-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PASCIU-03A-02R A61069 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4507-1./A61069.fastq	SRR5912872	@dbgap@:reads/SRP011999/SRS2416204/SRX3073864/SRR5912872/SRR5912872.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASCIU-03A-02R.gene.quantification.txt	3			
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-02R	RNA	EFO	SRS2416204	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-02R A61069 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61069	SRX3073864	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASCIU-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PASCIU-03A-02R A61069 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4507-1./A61069.fastq	SRR5912872	@dbgap@:reads/SRP011999/SRS2416204/SRX3073864/SRR5912872/SRR5912872.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASCIU-03A-02R.isoform.quantification.txt	3			
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-02R	RNA	EFO	SRS2416204	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-02R A61069 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61069	SRX3073864	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASCIU-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PASCIU-03A-02R A61069 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4507-1./A61069.fastq	SRR5912872	@dbgap@:reads/SRP011999/SRS2416204/SRX3073864/SRR5912872/SRR5912872.sra	1								bcgsc.ca:Protocol:mRNAseq-Fusion-DeFuse:01		TARGET-10-PASCIU-03A-02R.results.filtered.tsv	3			
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-02R	RNA	EFO	SRS2416204	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-02R A61069 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61069	SRX3073864	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASCIU-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PASCIU-03A-02R A61069 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4507-1./A61069.fastq	SRR5912872	@dbgap@:reads/SRP011999/SRS2416204/SRX3073864/SRR5912872/SRR5912872.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASCIU-03A-02R.fusion.vcf	3			
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-02R	RNA	EFO	SRS2416204	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-02R A61069 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61069	SRX3073864	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASCIU-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PASCIU-03A-02R A61069 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4507-1./A61069.fastq	SRR5912872	@dbgap@:reads/SRP011999/SRS2416204/SRX3073864/SRR5912872/SRR5912872.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASCIU-03A-02R.indel.vcf	3			
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-02R	RNA	EFO	SRS2416204	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASCIU-03A-02R A61069 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61069	SRX3073864	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASCIU-03A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PASCIU-03A-02R A61069 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4507-1./A61069.fastq	SRR5912872	@dbgap@:reads/SRP011999/SRS2416204/SRX3073864/SRR5912872/SRR5912872.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-10-PASCIU-03A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Tab:01	TARGET-10-PASCIU-03A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASDYK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASDYK-03A-02R	RNA	EFO	SRS602192	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASDYK-03A-02R A33628 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33628	SRX547658	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASDYK-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PASDYK-03A-02R A33628 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2200-1./A33628.fastq	SRR1797064	@dbgap@:reads/SRP011999/SRS602192/SRX547658/SRR1797064/SRR1797064.sra	1	"HIGH NON-GENIC CONTENT (intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33628_1_lane_dupsFlagged.bam	SRR1293031	@dbgap@:reads/SRP011999/SRS602192/SRX547658/SRR1293031/SRR1293031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASDYK-03A-02R.exon.quantification.txt	3			
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASDYK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASDYK-03A-02R	RNA	EFO	SRS602192	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASDYK-03A-02R A33628 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33628	SRX547658	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASDYK-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PASDYK-03A-02R A33628 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2200-1./A33628.fastq	SRR1797064	@dbgap@:reads/SRP011999/SRS602192/SRX547658/SRR1797064/SRR1797064.sra	1	"HIGH NON-GENIC CONTENT (intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33628_1_lane_dupsFlagged.bam	SRR1293031	@dbgap@:reads/SRP011999/SRS602192/SRX547658/SRR1293031/SRR1293031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASDYK-03A-02R.gene.quantification.txt	3			
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASDYK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASDYK-03A-02R	RNA	EFO	SRS602192	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASDYK-03A-02R A33628 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33628	SRX547658	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASDYK-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PASDYK-03A-02R A33628 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2200-1./A33628.fastq	SRR1797064	@dbgap@:reads/SRP011999/SRS602192/SRX547658/SRR1797064/SRR1797064.sra	1	"HIGH NON-GENIC CONTENT (intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33628_1_lane_dupsFlagged.bam	SRR1293031	@dbgap@:reads/SRP011999/SRS602192/SRX547658/SRR1293031/SRR1293031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASDYK-03A-02R.isoform.quantification.txt	3			
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASDYK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASDYK-03A-02R	RNA	EFO	SRS602192	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASDYK-03A-02R A33628 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33628	SRX547658	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASDYK-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PASDYK-03A-02R A33628 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2200-1./A33628.fastq	SRR1797064	@dbgap@:reads/SRP011999/SRS602192/SRX547658/SRR1797064/SRR1797064.sra	1	"HIGH NON-GENIC CONTENT (intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33628_1_lane_dupsFlagged.bam	SRR1293031	@dbgap@:reads/SRP011999/SRS602192/SRX547658/SRR1293031/SRR1293031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASDYK-03A-02R.fusion.vcf	3			
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASDYK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASDYK-03A-02R	RNA	EFO	SRS602192	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASDYK-03A-02R A33628 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33628	SRX547658	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASDYK-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PASDYK-03A-02R A33628 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2200-1./A33628.fastq	SRR1797064	@dbgap@:reads/SRP011999/SRS602192/SRX547658/SRR1797064/SRR1797064.sra	1	"HIGH NON-GENIC CONTENT (intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33628_1_lane_dupsFlagged.bam	SRR1293031	@dbgap@:reads/SRP011999/SRS602192/SRX547658/SRR1293031/SRR1293031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASDYK-03A-02R.indel.vcf	3			
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASDYK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASDYK-03A-02R	RNA	EFO	SRS602192	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASDYK-03A-02R A33628 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33628	SRX547658	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASDYK-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PASDYK-03A-02R A33628 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2200-1./A33628.fastq	SRR1797064	@dbgap@:reads/SRP011999/SRS602192/SRX547658/SRR1797064/SRR1797064.sra	1	"HIGH NON-GENIC CONTENT (intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A33628_1_lane_dupsFlagged.bam	SRR1293031	@dbgap@:reads/SRP011999/SRS602192/SRX547658/SRR1293031/SRR1293031.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PASDYK-03A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASEVJ-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASEVJ-09B-01R	RNA	EFO	SRS748341	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASEVJ-09B-01R A35283 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A35283	SRX730960	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASEVJ-09B-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-07	TARGET-10-PASEVJ-09B-01R A35283 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2734-1./A35283.fastq	SRR1797100	@dbgap@:reads/SRP011999/SRS748341/SRX730960/SRR1797100/SRR1797100.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A35283_1_lane_dupsFlagged.bam	SRR1610443	@dbgap@:reads/SRP011999/SRS748341/SRX730960/SRR1610443/SRR1610443.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASEVJ-09B-01R.exon.quantification.txt	3			
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASEVJ-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASEVJ-09B-01R	RNA	EFO	SRS748341	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASEVJ-09B-01R A35283 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A35283	SRX730960	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASEVJ-09B-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-07	TARGET-10-PASEVJ-09B-01R A35283 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2734-1./A35283.fastq	SRR1797100	@dbgap@:reads/SRP011999/SRS748341/SRX730960/SRR1797100/SRR1797100.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A35283_1_lane_dupsFlagged.bam	SRR1610443	@dbgap@:reads/SRP011999/SRS748341/SRX730960/SRR1610443/SRR1610443.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASEVJ-09B-01R.gene.quantification.txt	3			
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASEVJ-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASEVJ-09B-01R	RNA	EFO	SRS748341	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASEVJ-09B-01R A35283 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A35283	SRX730960	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASEVJ-09B-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-07	TARGET-10-PASEVJ-09B-01R A35283 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2734-1./A35283.fastq	SRR1797100	@dbgap@:reads/SRP011999/SRS748341/SRX730960/SRR1797100/SRR1797100.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A35283_1_lane_dupsFlagged.bam	SRR1610443	@dbgap@:reads/SRP011999/SRS748341/SRX730960/SRR1610443/SRR1610443.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASEVJ-09B-01R.isoform.quantification.txt	3			
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASEVJ-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASEVJ-09B-01R	RNA	EFO	SRS748341	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASEVJ-09B-01R A35283 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A35283	SRX730960	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASEVJ-09B-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-07	TARGET-10-PASEVJ-09B-01R A35283 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2734-1./A35283.fastq	SRR1797100	@dbgap@:reads/SRP011999/SRS748341/SRX730960/SRR1797100/SRR1797100.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A35283_1_lane_dupsFlagged.bam	SRR1610443	@dbgap@:reads/SRP011999/SRS748341/SRX730960/SRR1610443/SRR1610443.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASEVJ-09B-01R.fusion.vcf	3			
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASEVJ-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASEVJ-09B-01R	RNA	EFO	SRS748341	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASEVJ-09B-01R A35283 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A35283	SRX730960	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASEVJ-09B-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-07	TARGET-10-PASEVJ-09B-01R A35283 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2734-1./A35283.fastq	SRR1797100	@dbgap@:reads/SRP011999/SRS748341/SRX730960/SRR1797100/SRR1797100.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A35283_1_lane_dupsFlagged.bam	SRR1610443	@dbgap@:reads/SRP011999/SRS748341/SRX730960/SRR1610443/SRR1610443.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASEVJ-09B-01R.indel.vcf	3			
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASEVJ-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASEVJ-09B-01R	RNA	EFO	SRS748341	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASEVJ-09B-01R A35283 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A35283	SRX730960	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASEVJ-09B-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-07	TARGET-10-PASEVJ-09B-01R A35283 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2734-1./A35283.fastq	SRR1797100	@dbgap@:reads/SRP011999/SRS748341/SRX730960/SRR1797100/SRR1797100.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A35283_1_lane_dupsFlagged.bam	SRR1610443	@dbgap@:reads/SRP011999/SRS748341/SRX730960/SRR1610443/SRR1610443.sra	2	GRCh37	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PASEVJ-09B-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PASFHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASFHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASFHR-09A-01R	RNA	EFO	SRS1284392	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASFHR-09A-01R SJALL015268_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	171	40.9	SJALL015268_D1_RNASEQ_1	SRX1571423		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASFHR-09A-01R SJALL015268_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASFHR-09A-01R.fastq	SRR3162205	@dbgap@:reads/SRP011999/SRS1284392/SRX1571423/SRR3162205/SRR3162205.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASFHR-09A-01R.expression.txt	3			
TARGET-10-PASFHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASFHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASFHR-09A-01R	RNA	EFO	SRS1284392	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASFHR-09A-01R SJALL015268_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	171	40.9	SJALL015268_D1_RNASEQ_1	SRX1571423		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASFHR-09A-01R SJALL015268_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASFHR-09A-01R.fastq	SRR3162205	@dbgap@:reads/SRP011999/SRS1284392/SRX1571423/SRR3162205/SRR3162205.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASFKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASFKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASFKA-09A-01R	RNA	EFO	SRS1284393	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASFKA-09A-01R SJALL015269_D1-TARGET-10-PASFKA-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	36.8	SJALL015269_D1-TARGET-10-PASFKA-09A-01D	SRX1571424		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASFKA-09A-01R SJALL015269_D1-TARGET-10-PASFKA-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASFKA-09A-01R.fastq	SRR3162206	@dbgap@:reads/SRP011999/SRS1284393/SRX1571424/SRR3162206/SRR3162206.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASFKA-09A-01R.expression.txt	3			
TARGET-10-PASFKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASFKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASFKA-09A-01R	RNA	EFO	SRS1284393	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASFKA-09A-01R SJALL015269_D1-TARGET-10-PASFKA-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	36.8	SJALL015269_D1-TARGET-10-PASFKA-09A-01D	SRX1571424		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASFKA-09A-01R SJALL015269_D1-TARGET-10-PASFKA-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASFKA-09A-01R.fastq	SRR3162206	@dbgap@:reads/SRP011999/SRS1284393/SRX1571424/SRR3162206/SRR3162206.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASFLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASFLK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASFLK-09A-01R	RNA	EFO	SRS1284391	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASFLK-09A-01R SJTALL175_E_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	36	SJTALL175_E_RNASEQ_1	SRX1571425		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASFLK-09A-01R SJTALL175_E_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASFLK-09A-01R.fastq	SRR3162173	@dbgap@:reads/SRP011999/SRS1284391/SRX1571425/SRR3162173/SRR3162173.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASFLK-09A-01R.expression.txt	3			
TARGET-10-PASFLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASFLK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASFLK-09A-01R	RNA	EFO	SRS1284391	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASFLK-09A-01R SJTALL175_E_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	36	SJTALL175_E_RNASEQ_1	SRX1571425		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASFLK-09A-01R SJTALL175_E_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASFLK-09A-01R.fastq	SRR3162173	@dbgap@:reads/SRP011999/SRS1284391/SRX1571425/SRR3162173/SRR3162173.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-03A-01R	RNA	EFO	SRS602026	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-03A-01R A32610 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32610	SRX543467	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASFXA-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-10-PASFXA-03A-01R A32610 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2576-1./A32610.fastq	SRR1791101	@dbgap@:reads/SRP011999/SRS602026/SRX543467/SRR1791101/SRR1791101.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A32610_1_lane_dupsFlagged.bam	SRR1288077	@dbgap@:reads/SRP011999/SRS602026/SRX543467/SRR1288077/SRR1288077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASFXA-03A-01R.exon.quantification.txt	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-03A-01R	RNA	EFO	SRS602026	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-03A-01R A32610 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32610	SRX543467	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASFXA-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-10-PASFXA-03A-01R A32610 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2576-1./A32610.fastq	SRR1791101	@dbgap@:reads/SRP011999/SRS602026/SRX543467/SRR1791101/SRR1791101.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A32610_1_lane_dupsFlagged.bam	SRR1288077	@dbgap@:reads/SRP011999/SRS602026/SRX543467/SRR1288077/SRR1288077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASFXA-03A-01R.gene.quantification.txt	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-03A-01R	RNA	EFO	SRS602026	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-03A-01R A32610 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32610	SRX543467	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASFXA-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-10-PASFXA-03A-01R A32610 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2576-1./A32610.fastq	SRR1791101	@dbgap@:reads/SRP011999/SRS602026/SRX543467/SRR1791101/SRR1791101.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A32610_1_lane_dupsFlagged.bam	SRR1288077	@dbgap@:reads/SRP011999/SRS602026/SRX543467/SRR1288077/SRR1288077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASFXA-03A-01R.isoform.quantification.txt	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-03A-01R	RNA	EFO	SRS602026	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-03A-01R A32610 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32610	SRX543467	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASFXA-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-10-PASFXA-03A-01R A32610 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2576-1./A32610.fastq	SRR1791101	@dbgap@:reads/SRP011999/SRS602026/SRX543467/SRR1791101/SRR1791101.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A32610_1_lane_dupsFlagged.bam	SRR1288077	@dbgap@:reads/SRP011999/SRS602026/SRX543467/SRR1288077/SRR1288077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASFXA-03A-01R.fusion.vcf	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-03A-01R	RNA	EFO	SRS602026	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-03A-01R A32610 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32610	SRX543467	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASFXA-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-10-PASFXA-03A-01R A32610 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2576-1./A32610.fastq	SRR1791101	@dbgap@:reads/SRP011999/SRS602026/SRX543467/SRR1791101/SRR1791101.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A32610_1_lane_dupsFlagged.bam	SRR1288077	@dbgap@:reads/SRP011999/SRS602026/SRX543467/SRR1288077/SRR1288077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASFXA-03A-01R.indel.vcf	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-03A-01R	RNA	EFO	SRS602026	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-03A-01R A32610 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32610	SRX543467	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASFXA-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-21	TARGET-10-PASFXA-03A-01R A32610 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2576-1./A32610.fastq	SRR1791101	@dbgap@:reads/SRP011999/SRS602026/SRX543467/SRR1791101/SRR1791101.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	A32610_1_lane_dupsFlagged.bam	SRR1288077	@dbgap@:reads/SRP011999/SRS602026/SRX543467/SRR1288077/SRR1288077.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PASFXA-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-01R	RNA	EFO	SRS602075	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-01R A32611 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32611	SRX543420	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASFXA-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PASFXA-04A-01R A32611 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2250-1./A32611.fastq	SRR1797089	@dbgap@:reads/SRP011999/SRS602075/SRX543420/SRR1797089/SRR1797089.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_1_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288065	@dbgap@:reads/SRP011999/SRS602075/SRX543420/SRR1288065/SRR1288065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASFXA-04A-01R.exon.quantification.txt	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-01R	RNA	EFO	SRS602075	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-01R A32611 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32611	SRX543420	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASFXA-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PASFXA-04A-01R A32611 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2250-1./A32611.fastq	SRR1797089	@dbgap@:reads/SRP011999/SRS602075/SRX543420/SRR1797089/SRR1797089.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_1_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288065	@dbgap@:reads/SRP011999/SRS602075/SRX543420/SRR1288065/SRR1288065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASFXA-04A-01R.gene.quantification.txt	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-01R	RNA	EFO	SRS602075	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-01R A32611 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32611	SRX543420	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASFXA-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PASFXA-04A-01R A32611 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2250-1./A32611.fastq	SRR1797089	@dbgap@:reads/SRP011999/SRS602075/SRX543420/SRR1797089/SRR1797089.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_1_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288065	@dbgap@:reads/SRP011999/SRS602075/SRX543420/SRR1288065/SRR1288065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASFXA-04A-01R.isoform.quantification.txt	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-01R	RNA	EFO	SRS602075	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-01R A32611 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32611	SRX543420	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASFXA-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PASFXA-04A-01R A32611 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2250-1./A32611.fastq	SRR1797089	@dbgap@:reads/SRP011999/SRS602075/SRX543420/SRR1797089/SRR1797089.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_1_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288065	@dbgap@:reads/SRP011999/SRS602075/SRX543420/SRR1288065/SRR1288065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASFXA-04A-01R.fusion.vcf	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-01R	RNA	EFO	SRS602075	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-01R A32611 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32611	SRX543420	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASFXA-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PASFXA-04A-01R A32611 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2250-1./A32611.fastq	SRR1797089	@dbgap@:reads/SRP011999/SRS602075/SRX543420/SRR1797089/SRR1797089.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_1_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288065	@dbgap@:reads/SRP011999/SRS602075/SRX543420/SRR1288065/SRR1288065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASFXA-04A-01R.indel.vcf	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-01R	RNA	EFO	SRS602075	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-01R A32611 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32611	SRX543420	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASFXA-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-26	TARGET-10-PASFXA-04A-01R A32611 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2250-1./A32611.fastq	SRR1797089	@dbgap@:reads/SRP011999/SRS602075/SRX543420/SRR1797089/SRR1797089.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GCAACXX_1_AACCCC_withJunctionsOnGenome_dupsFlagged.bam	SRR1288065	@dbgap@:reads/SRP011999/SRS602075/SRX543420/SRR1288065/SRR1288065.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PASFXA-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-02R	RNA	EFO	SRS2416210	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-02R A61070 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61070	SRX3073858	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASFXA-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PASFXA-04A-02R A61070 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4507-1./A61070.fastq	SRR5912867	@dbgap@:reads/SRP011999/SRS2416210/SRX3073858/SRR5912867/SRR5912867.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASFXA-04A-02R.exon.quantification.txt	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-02R	RNA	EFO	SRS2416210	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-02R A61070 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61070	SRX3073858	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASFXA-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PASFXA-04A-02R A61070 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4507-1./A61070.fastq	SRR5912867	@dbgap@:reads/SRP011999/SRS2416210/SRX3073858/SRR5912867/SRR5912867.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASFXA-04A-02R.gene.quantification.txt	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-02R	RNA	EFO	SRS2416210	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-02R A61070 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61070	SRX3073858	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASFXA-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PASFXA-04A-02R A61070 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4507-1./A61070.fastq	SRR5912867	@dbgap@:reads/SRP011999/SRS2416210/SRX3073858/SRR5912867/SRR5912867.sra	1								bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASFXA-04A-02R.isoform.quantification.txt	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-02R	RNA	EFO	SRS2416210	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-02R A61070 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61070	SRX3073858	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASFXA-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PASFXA-04A-02R A61070 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4507-1./A61070.fastq	SRR5912867	@dbgap@:reads/SRP011999/SRS2416210/SRX3073858/SRR5912867/SRR5912867.sra	1								bcgsc.ca:Protocol:mRNAseq-Fusion-DeFuse:01		TARGET-10-PASFXA-04A-02R.results.filtered.tsv	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-02R	RNA	EFO	SRS2416210	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-02R A61070 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61070	SRX3073858	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASFXA-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PASFXA-04A-02R A61070 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4507-1./A61070.fastq	SRR5912867	@dbgap@:reads/SRP011999/SRS2416210/SRX3073858/SRR5912867/SRR5912867.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASFXA-04A-02R.fusion.vcf	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-02R	RNA	EFO	SRS2416210	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-02R A61070 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61070	SRX3073858	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASFXA-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PASFXA-04A-02R A61070 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4507-1./A61070.fastq	SRR5912867	@dbgap@:reads/SRP011999/SRS2416210/SRX3073858/SRR5912867/SRR5912867.sra	1								bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASFXA-04A-02R.indel.vcf	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-02R	RNA	EFO	SRS2416210	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-rRnaDepleted-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASFXA-04A-02R A61070 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A61070	SRX3073858	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASFXA-04A-02R using Illumina HiSeq 2500"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-10-PASFXA-04A-02R A61070 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	IX4507-1./A61070.fastq	SRR5912867	@dbgap@:reads/SRP011999/SRS2416210/SRX3073858/SRR5912867/SRR5912867.sra	1								bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01		TARGET-10-PASFXA-04A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Tab:01	TARGET-10-PASFXA-04A-02R.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3
TARGET-10-PASGFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASGFH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASGFH-09A-01R	RNA	EFO	SRS1284390	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASGFH-09A-01R SJTALL021661_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	159	33.9	SJTALL021661_D2_RNASEQ_1	SRX1571426		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASGFH-09A-01R SJTALL021661_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASGFH-09A-01R.fastq	SRR3162174	@dbgap@:reads/SRP011999/SRS1284390/SRX1571426/SRR3162174/SRR3162174.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASGFH-09A-01R.expression.txt	3			
TARGET-10-PASGFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASGFH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASGFH-09A-01R	RNA	EFO	SRS1284390	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASGFH-09A-01R SJTALL021661_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	159	33.9	SJTALL021661_D2_RNASEQ_1	SRX1571426		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASGFH-09A-01R SJTALL021661_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASGFH-09A-01R.fastq	SRR3162174	@dbgap@:reads/SRP011999/SRS1284390/SRX1571426/SRR3162174/SRR3162174.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASHDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASHDV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASHDV-09A-01R	RNA	EFO	SRS1284389	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASHDV-09A-01R SJTALL022654_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	35.4	SJTALL022654_D2_RNASEQ_1	SRX1571427		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASHDV-09A-01R SJTALL022654_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASHDV-09A-01R.fastq	SRR3162175	@dbgap@:reads/SRP011999/SRS1284389/SRX1571427/SRR3162175/SRR3162175.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASHDV-09A-01R.expression.txt	3			
TARGET-10-PASHDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASHDV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASHDV-09A-01R	RNA	EFO	SRS1284389	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASHDV-09A-01R SJTALL022654_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	35.4	SJTALL022654_D2_RNASEQ_1	SRX1571427		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASHDV-09A-01R SJTALL022654_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASHDV-09A-01R.fastq	SRR3162175	@dbgap@:reads/SRP011999/SRS1284389/SRX1571427/SRR3162175/SRR3162175.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASHNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASHNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASHNK-09A-01R	RNA	EFO	SRS1284388	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASHNK-09A-01R SJALL015621_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	38.9	SJALL015621_D1_RNASEQ_1	SRX1571428		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASHNK-09A-01R SJALL015621_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASHNK-09A-01R.fastq	SRR3162176	@dbgap@:reads/SRP011999/SRS1284388/SRX1571428/SRR3162176/SRR3162176.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASHNK-09A-01R.expression.txt	3			
TARGET-10-PASHNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASHNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASHNK-09A-01R	RNA	EFO	SRS1284388	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASHNK-09A-01R SJALL015621_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	38.9	SJALL015621_D1_RNASEQ_1	SRX1571428		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASHNK-09A-01R SJALL015621_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASHNK-09A-01R.fastq	SRR3162176	@dbgap@:reads/SRP011999/SRS1284388/SRX1571428/SRR3162176/SRR3162176.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASHUI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASHUI-04A-02R	RNA	EFO	SRS602224	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASHUI-04A-02R A33625 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33625	SRX547681	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASHUI-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PASHUI-04A-02R A33625 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2169-1./A33625.fastq	SRR1797070	@dbgap@:reads/SRP011999/SRS602224/SRX547681/SRR1797070/SRR1797070.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_1_TCATTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293029	@dbgap@:reads/SRP011999/SRS602224/SRX547681/SRR1293029/SRR1293029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASHUI-04A-02R.exon.quantification.txt	3			
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASHUI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASHUI-04A-02R	RNA	EFO	SRS602224	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASHUI-04A-02R A33625 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33625	SRX547681	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASHUI-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PASHUI-04A-02R A33625 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2169-1./A33625.fastq	SRR1797070	@dbgap@:reads/SRP011999/SRS602224/SRX547681/SRR1797070/SRR1797070.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_1_TCATTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293029	@dbgap@:reads/SRP011999/SRS602224/SRX547681/SRR1293029/SRR1293029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASHUI-04A-02R.gene.quantification.txt	3			
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASHUI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASHUI-04A-02R	RNA	EFO	SRS602224	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASHUI-04A-02R A33625 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33625	SRX547681	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASHUI-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PASHUI-04A-02R A33625 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2169-1./A33625.fastq	SRR1797070	@dbgap@:reads/SRP011999/SRS602224/SRX547681/SRR1797070/SRR1797070.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_1_TCATTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293029	@dbgap@:reads/SRP011999/SRS602224/SRX547681/SRR1293029/SRR1293029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASHUI-04A-02R.isoform.quantification.txt	3			
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASHUI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASHUI-04A-02R	RNA	EFO	SRS602224	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASHUI-04A-02R A33625 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33625	SRX547681	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASHUI-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PASHUI-04A-02R A33625 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2169-1./A33625.fastq	SRR1797070	@dbgap@:reads/SRP011999/SRS602224/SRX547681/SRR1797070/SRR1797070.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_1_TCATTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293029	@dbgap@:reads/SRP011999/SRS602224/SRX547681/SRR1293029/SRR1293029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASHUI-04A-02R.fusion.vcf	3			
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASHUI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASHUI-04A-02R	RNA	EFO	SRS602224	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASHUI-04A-02R A33625 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33625	SRX547681	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASHUI-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PASHUI-04A-02R A33625 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2169-1./A33625.fastq	SRR1797070	@dbgap@:reads/SRP011999/SRS602224/SRX547681/SRR1797070/SRR1797070.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_1_TCATTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293029	@dbgap@:reads/SRP011999/SRS602224/SRX547681/SRR1293029/SRR1293029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASHUI-04A-02R.indel.vcf	3			
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASHUI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASHUI-04A-02R	RNA	EFO	SRS602224	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASHUI-04A-02R A33625 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33625	SRX547681	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASHUI-04A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PASHUI-04A-02R A33625 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2169-1./A33625.fastq	SRR1797070	@dbgap@:reads/SRP011999/SRS602224/SRX547681/SRR1797070/SRR1797070.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34BUACXX_1_TCATTC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293029	@dbgap@:reads/SRP011999/SRS602224/SRX547681/SRR1293029/SRR1293029.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PASHUI-04A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASHUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASHUI-09A-02R	RNA	EFO	SRS602219	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASHUI-09A-02R A33627 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33627	SRX547644	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASHUI-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PASHUI-09A-02R A33627 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2188-1./A33627.fastq	SRR1797082	@dbgap@:reads/SRP011999/SRS602219/SRX547644/SRR1797082/SRR1797082.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_4_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293056	@dbgap@:reads/SRP011999/SRS602219/SRX547644/SRR1293056/SRR1293056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASHUI-09A-02R.exon.quantification.txt	3			
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASHUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASHUI-09A-02R	RNA	EFO	SRS602219	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASHUI-09A-02R A33627 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33627	SRX547644	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASHUI-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PASHUI-09A-02R A33627 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2188-1./A33627.fastq	SRR1797082	@dbgap@:reads/SRP011999/SRS602219/SRX547644/SRR1797082/SRR1797082.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_4_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293056	@dbgap@:reads/SRP011999/SRS602219/SRX547644/SRR1293056/SRR1293056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASHUI-09A-02R.gene.quantification.txt	3			
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASHUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASHUI-09A-02R	RNA	EFO	SRS602219	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASHUI-09A-02R A33627 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33627	SRX547644	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASHUI-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PASHUI-09A-02R A33627 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2188-1./A33627.fastq	SRR1797082	@dbgap@:reads/SRP011999/SRS602219/SRX547644/SRR1797082/SRR1797082.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_4_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293056	@dbgap@:reads/SRP011999/SRS602219/SRX547644/SRR1293056/SRR1293056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASHUI-09A-02R.isoform.quantification.txt	3			
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASHUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASHUI-09A-02R	RNA	EFO	SRS602219	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASHUI-09A-02R A33627 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33627	SRX547644	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASHUI-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PASHUI-09A-02R A33627 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2188-1./A33627.fastq	SRR1797082	@dbgap@:reads/SRP011999/SRS602219/SRX547644/SRR1797082/SRR1797082.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_4_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293056	@dbgap@:reads/SRP011999/SRS602219/SRX547644/SRR1293056/SRR1293056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASHUI-09A-02R.fusion.vcf	3			
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASHUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASHUI-09A-02R	RNA	EFO	SRS602219	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASHUI-09A-02R A33627 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33627	SRX547644	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASHUI-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PASHUI-09A-02R A33627 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2188-1./A33627.fastq	SRR1797082	@dbgap@:reads/SRP011999/SRS602219/SRX547644/SRR1797082/SRR1797082.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_4_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293056	@dbgap@:reads/SRP011999/SRS602219/SRX547644/SRR1293056/SRR1293056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASHUI-09A-02R.indel.vcf	3			
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASHUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASHUI-09A-02R	RNA	EFO	SRS602219	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASHUI-09A-02R A33627 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33627	SRX547644	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASHUI-09A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PASHUI-09A-02R A33627 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2188-1./A33627.fastq	SRR1797082	@dbgap@:reads/SRP011999/SRS602219/SRX547644/SRR1797082/SRR1797082.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_4_GTAGAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293056	@dbgap@:reads/SRP011999/SRS602219/SRX547644/SRR1293056/SRR1293056.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PASHUI-09A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PASHUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASHUP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASHUP-09A-01R	RNA	EFO	SRS1284387	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASHUP-09A-01R SJALL015274_D1-TARGET-10-PASHUP-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	39	SJALL015274_D1-TARGET-10-PASHUP-09A-01D	SRX1571429		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASHUP-09A-01R SJALL015274_D1-TARGET-10-PASHUP-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASHUP-09A-01R.fastq	SRR3162207	@dbgap@:reads/SRP011999/SRS1284387/SRX1571429/SRR3162207/SRR3162207.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASHUP-09A-01R.expression.txt	3			
TARGET-10-PASHUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASHUP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASHUP-09A-01R	RNA	EFO	SRS1284387	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASHUP-09A-01R SJALL015274_D1-TARGET-10-PASHUP-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	39	SJALL015274_D1-TARGET-10-PASHUP-09A-01D	SRX1571429		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASHUP-09A-01R SJALL015274_D1-TARGET-10-PASHUP-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASHUP-09A-01R.fastq	SRR3162207	@dbgap@:reads/SRP011999/SRS1284387/SRX1571429/SRR3162207/SRR3162207.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASHXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASHXL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASHXL-09A-01R	RNA	EFO	SRS1284386	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASHXL-09A-01R SJTALL022091_D2-TARGET-10-PASHXL-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	40.1	SJTALL022091_D2-TARGET-10-PASHXL-09A-01	SRX1571430		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASHXL-09A-01R SJTALL022091_D2-TARGET-10-PASHXL-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASHXL-09A-01R.fastq	SRR3162208	@dbgap@:reads/SRP011999/SRS1284386/SRX1571430/SRR3162208/SRR3162208.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASHXL-09A-01R.expression.txt	3			
TARGET-10-PASHXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASHXL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASHXL-09A-01R	RNA	EFO	SRS1284386	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASHXL-09A-01R SJTALL022091_D2-TARGET-10-PASHXL-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	40.1	SJTALL022091_D2-TARGET-10-PASHXL-09A-01	SRX1571430		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASHXL-09A-01R SJTALL022091_D2-TARGET-10-PASHXL-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASHXL-09A-01R.fastq	SRR3162208	@dbgap@:reads/SRP011999/SRS1284386/SRX1571430/SRR3162208/SRR3162208.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASIIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASIIY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASIIY-09A-01R	RNA	EFO	SRS1284385	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASIIY-09A-01R SJTALL022655_D2-TARGET-10-PASIIY-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	37.4	SJTALL022655_D2-TARGET-10-PASIIY-09A-01	SRX1571431		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASIIY-09A-01R SJTALL022655_D2-TARGET-10-PASIIY-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASIIY-09A-01R.fastq	SRR3162209	@dbgap@:reads/SRP011999/SRS1284385/SRX1571431/SRR3162209/SRR3162209.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASIIY-09A-01R.expression.txt	3			
TARGET-10-PASIIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASIIY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASIIY-09A-01R	RNA	EFO	SRS1284385	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASIIY-09A-01R SJTALL022655_D2-TARGET-10-PASIIY-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	37.4	SJTALL022655_D2-TARGET-10-PASIIY-09A-01	SRX1571431		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASIIY-09A-01R SJTALL022655_D2-TARGET-10-PASIIY-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASIIY-09A-01R.fastq	SRR3162209	@dbgap@:reads/SRP011999/SRS1284385/SRX1571431/SRR3162209/SRR3162209.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASILW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASILW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASILW-09A-01R	RNA	EFO	SRS1284383	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASILW-09A-01R SJALL015622_D1-TARGET-10-PASILW-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	38.2	SJALL015622_D1-TARGET-10-PASILW-09A-01	SRX1571432		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASILW-09A-01R SJALL015622_D1-TARGET-10-PASILW-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASILW-09A-01R.fastq	SRR3162210	@dbgap@:reads/SRP011999/SRS1284383/SRX1571432/SRR3162210/SRR3162210.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASILW-09A-01R.expression.txt	3			
TARGET-10-PASILW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASILW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASILW-09A-01R	RNA	EFO	SRS1284383	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASILW-09A-01R SJALL015622_D1-TARGET-10-PASILW-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	38.2	SJALL015622_D1-TARGET-10-PASILW-09A-01	SRX1571432		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASILW-09A-01R SJALL015622_D1-TARGET-10-PASILW-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASILW-09A-01R.fastq	SRR3162210	@dbgap@:reads/SRP011999/SRS1284383/SRX1571432/SRR3162210/SRR3162210.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASINX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASINX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASINX-09A-01R	RNA	EFO	SRS1284382	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASINX-09A-01R SJALL015623_D1-TARGET-10-PASINX-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	159	34.2	SJALL015623_D1-TARGET-10-PASINX-09A-01	SRX1571433		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASINX-09A-01R SJALL015623_D1-TARGET-10-PASINX-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASINX-09A-01R.fastq	SRR3162211	@dbgap@:reads/SRP011999/SRS1284382/SRX1571433/SRR3162211/SRR3162211.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASINX-09A-01R.expression.txt	3			
TARGET-10-PASINX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASINX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASINX-09A-01R	RNA	EFO	SRS1284382	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASINX-09A-01R SJALL015623_D1-TARGET-10-PASINX-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	159	34.2	SJALL015623_D1-TARGET-10-PASINX-09A-01	SRX1571433		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASINX-09A-01R SJALL015623_D1-TARGET-10-PASINX-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASINX-09A-01R.fastq	SRR3162211	@dbgap@:reads/SRP011999/SRS1284382/SRX1571433/SRR3162211/SRR3162211.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASJJR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASJJR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASJJR-09A-01R	RNA	EFO	SRS1284384	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASJJR-09A-01R SJTALL177_E_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	35.6	SJTALL177_E_RNASEQ_1	SRX1571434		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASJJR-09A-01R SJTALL177_E_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASJJR-09A-01R.fastq	SRR3162212	@dbgap@:reads/SRP011999/SRS1284384/SRX1571434/SRR3162212/SRR3162212.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASJJR-09A-01R.expression.txt	3			
TARGET-10-PASJJR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASJJR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASJJR-09A-01R	RNA	EFO	SRS1284384	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASJJR-09A-01R SJTALL177_E_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	35.6	SJTALL177_E_RNASEQ_1	SRX1571434		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASJJR-09A-01R SJTALL177_E_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASJJR-09A-01R.fastq	SRR3162212	@dbgap@:reads/SRP011999/SRS1284384/SRX1571434/SRR3162212/SRR3162212.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASJLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASJLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASJLN-09A-01R	RNA	EFO	SRS1284381	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASJLN-09A-01R SJTALL022656_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	38.1	SJTALL022656_D2_RNASEQ_1	SRX1571435		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASJLN-09A-01R SJTALL022656_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASJLN-09A-01R.fastq	SRR3162213	@dbgap@:reads/SRP011999/SRS1284381/SRX1571435/SRR3162213/SRR3162213.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASJLN-09A-01R.expression.txt	3			
TARGET-10-PASJLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASJLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASJLN-09A-01R	RNA	EFO	SRS1284381	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASJLN-09A-01R SJTALL022656_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	38.1	SJTALL022656_D2_RNASEQ_1	SRX1571435		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASJLN-09A-01R SJTALL022656_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASJLN-09A-01R.fastq	SRR3162213	@dbgap@:reads/SRP011999/SRS1284381/SRX1571435/SRR3162213/SRR3162213.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASJMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASJMK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASJMK-09A-01R	RNA	EFO	SRS1284380	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASJMK-09A-01R SJTALL022093_D2-TARGET-10-PASJMK-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	139	18.4	SJTALL022093_D2-TARGET-10-PASJMK-09A-01	SRX1571436		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASJMK-09A-01R SJTALL022093_D2-TARGET-10-PASJMK-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASJMK-09A-01R.fastq	SRR3162214	@dbgap@:reads/SRP011999/SRS1284380/SRX1571436/SRR3162214/SRR3162214.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASJMK-09A-01R.expression.txt	3			
TARGET-10-PASJMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASJMK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASJMK-09A-01R	RNA	EFO	SRS1284380	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASJMK-09A-01R SJTALL022093_D2-TARGET-10-PASJMK-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	139	18.4	SJTALL022093_D2-TARGET-10-PASJMK-09A-01	SRX1571436		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASJMK-09A-01R SJTALL022093_D2-TARGET-10-PASJMK-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASJMK-09A-01R.fastq	SRR3162214	@dbgap@:reads/SRP011999/SRS1284380/SRX1571436/SRR3162214/SRR3162214.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASJYI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASJYI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASJYI-09A-01R	RNA	EFO	SRS1284379	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASJYI-09A-01R SJALL016430_D1-TARGET-10-PASJYI-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	35.3	SJALL016430_D1-TARGET-10-PASJYI-09A-01	SRX1571437		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASJYI-09A-01R SJALL016430_D1-TARGET-10-PASJYI-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASJYI-09A-01R.fastq	SRR3162215	@dbgap@:reads/SRP011999/SRS1284379/SRX1571437/SRR3162215/SRR3162215.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASJYI-09A-01R.expression.txt	3			
TARGET-10-PASJYI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASJYI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASJYI-09A-01R	RNA	EFO	SRS1284379	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASJYI-09A-01R SJALL016430_D1-TARGET-10-PASJYI-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	35.3	SJALL016430_D1-TARGET-10-PASJYI-09A-01	SRX1571437		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASJYI-09A-01R SJALL016430_D1-TARGET-10-PASJYI-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASJYI-09A-01R.fastq	SRR3162215	@dbgap@:reads/SRP011999/SRS1284379/SRX1571437/SRR3162215/SRR3162215.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASKAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKAD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASKAD-09A-01R	RNA	EFO	SRS1284378	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASKAD-09A-01R SJALL016431_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	157	34.8	SJALL016431_D1_RNASEQ_1	SRX1571438		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASKAD-09A-01R SJALL016431_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASKAD-09A-01R.fastq	SRR3162216	@dbgap@:reads/SRP011999/SRS1284378/SRX1571438/SRR3162216/SRR3162216.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASKAD-09A-01R.expression.txt	3			
TARGET-10-PASKAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKAD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASKAD-09A-01R	RNA	EFO	SRS1284378	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASKAD-09A-01R SJALL016431_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	157	34.8	SJALL016431_D1_RNASEQ_1	SRX1571438		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASKAD-09A-01R SJALL016431_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASKAD-09A-01R.fastq	SRR3162216	@dbgap@:reads/SRP011999/SRS1284378/SRX1571438/SRR3162216/SRR3162216.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKAY-04A-01R	RNA	EFO	SRS602179	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKAY-04A-01R A32768 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32768	SRX547638	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASKAY-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PASKAY-04A-01R A32768 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2272-1./A32768.fastq	SRR1797092	@dbgap@:reads/SRP011999/SRS602179/SRX547638/SRR1797092/SRR1797092.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_7_GAATAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292964	@dbgap@:reads/SRP011999/SRS602179/SRX547638/SRR1292964/SRR1292964.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASKAY-04A-01R.exon.quantification.txt	3			
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKAY-04A-01R	RNA	EFO	SRS602179	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKAY-04A-01R A32768 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32768	SRX547638	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASKAY-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PASKAY-04A-01R A32768 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2272-1./A32768.fastq	SRR1797092	@dbgap@:reads/SRP011999/SRS602179/SRX547638/SRR1797092/SRR1797092.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_7_GAATAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292964	@dbgap@:reads/SRP011999/SRS602179/SRX547638/SRR1292964/SRR1292964.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASKAY-04A-01R.gene.quantification.txt	3			
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKAY-04A-01R	RNA	EFO	SRS602179	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKAY-04A-01R A32768 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32768	SRX547638	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASKAY-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PASKAY-04A-01R A32768 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2272-1./A32768.fastq	SRR1797092	@dbgap@:reads/SRP011999/SRS602179/SRX547638/SRR1797092/SRR1797092.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_7_GAATAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292964	@dbgap@:reads/SRP011999/SRS602179/SRX547638/SRR1292964/SRR1292964.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASKAY-04A-01R.isoform.quantification.txt	3			
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKAY-04A-01R	RNA	EFO	SRS602179	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKAY-04A-01R A32768 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32768	SRX547638	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASKAY-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PASKAY-04A-01R A32768 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2272-1./A32768.fastq	SRR1797092	@dbgap@:reads/SRP011999/SRS602179/SRX547638/SRR1797092/SRR1797092.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_7_GAATAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292964	@dbgap@:reads/SRP011999/SRS602179/SRX547638/SRR1292964/SRR1292964.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASKAY-04A-01R.fusion.vcf	3			
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKAY-04A-01R	RNA	EFO	SRS602179	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKAY-04A-01R A32768 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32768	SRX547638	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASKAY-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PASKAY-04A-01R A32768 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2272-1./A32768.fastq	SRR1797092	@dbgap@:reads/SRP011999/SRS602179/SRX547638/SRR1797092/SRR1797092.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_7_GAATAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292964	@dbgap@:reads/SRP011999/SRS602179/SRX547638/SRR1292964/SRR1292964.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASKAY-04A-01R.indel.vcf	3			
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKAY-04A-01R	RNA	EFO	SRS602179	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKAY-04A-01R A32768 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32768	SRX547638	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASKAY-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-27	TARGET-10-PASKAY-04A-01R A32768 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2272-1./A32768.fastq	SRR1797092	@dbgap@:reads/SRP011999/SRS602179/SRX547638/SRR1797092/SRR1797092.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GF0ACXX_7_GAATAA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292964	@dbgap@:reads/SRP011999/SRS602179/SRX547638/SRR1292964/SRR1292964.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PASKAY-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKAY-09A-01R	RNA	EFO	SRS602188	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKAY-09A-01R A32769 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32769	SRX547604	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASKAY-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PASKAY-09A-01R A32769 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2287-1./A32769.fastq	SRR1791109	@dbgap@:reads/SRP011999/SRS602188/SRX547604/SRR1791109/SRR1791109.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_6_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292998	@dbgap@:reads/SRP011999/SRS602188/SRX547604/SRR1292998/SRR1292998.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASKAY-09A-01R.exon.quantification.txt	3			
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKAY-09A-01R	RNA	EFO	SRS602188	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKAY-09A-01R A32769 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32769	SRX547604	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASKAY-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PASKAY-09A-01R A32769 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2287-1./A32769.fastq	SRR1791109	@dbgap@:reads/SRP011999/SRS602188/SRX547604/SRR1791109/SRR1791109.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_6_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292998	@dbgap@:reads/SRP011999/SRS602188/SRX547604/SRR1292998/SRR1292998.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASKAY-09A-01R.gene.quantification.txt	3			
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKAY-09A-01R	RNA	EFO	SRS602188	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKAY-09A-01R A32769 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32769	SRX547604	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASKAY-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PASKAY-09A-01R A32769 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2287-1./A32769.fastq	SRR1791109	@dbgap@:reads/SRP011999/SRS602188/SRX547604/SRR1791109/SRR1791109.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_6_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292998	@dbgap@:reads/SRP011999/SRS602188/SRX547604/SRR1292998/SRR1292998.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASKAY-09A-01R.isoform.quantification.txt	3			
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKAY-09A-01R	RNA	EFO	SRS602188	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKAY-09A-01R A32769 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32769	SRX547604	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASKAY-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PASKAY-09A-01R A32769 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2287-1./A32769.fastq	SRR1791109	@dbgap@:reads/SRP011999/SRS602188/SRX547604/SRR1791109/SRR1791109.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_6_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292998	@dbgap@:reads/SRP011999/SRS602188/SRX547604/SRR1292998/SRR1292998.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASKAY-09A-01R.fusion.vcf	3			
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKAY-09A-01R	RNA	EFO	SRS602188	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKAY-09A-01R A32769 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32769	SRX547604	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASKAY-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PASKAY-09A-01R A32769 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2287-1./A32769.fastq	SRR1791109	@dbgap@:reads/SRP011999/SRS602188/SRX547604/SRR1791109/SRR1791109.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_6_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292998	@dbgap@:reads/SRP011999/SRS602188/SRX547604/SRR1292998/SRR1292998.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASKAY-09A-01R.indel.vcf	3			
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKAY-09A-01R	RNA	EFO	SRS602188	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKAY-09A-01R A32769 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32769	SRX547604	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASKAY-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PASKAY-09A-01R A32769 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2287-1./A32769.fastq	SRR1791109	@dbgap@:reads/SRP011999/SRS602188/SRX547604/SRR1791109/SRR1791109.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_6_GCTCCA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292998	@dbgap@:reads/SRP011999/SRS602188/SRX547604/SRR1292998/SRR1292998.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PASKAY-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PASKCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKCL-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASKCL-09B-01R	RNA	EFO	SRS1284377	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASKCL-09B-01R SJBALL002373_D1-TARGET-10-PASKCL-09B-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	37.6	SJBALL002373_D1-TARGET-10-PASKCL-09B-01	SRX1571439		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASKCL-09B-01R SJBALL002373_D1-TARGET-10-PASKCL-09B-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASKCL-09B-01R.fastq	SRR3162217	@dbgap@:reads/SRP011999/SRS1284377/SRX1571439/SRR3162217/SRR3162217.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASKCL-09B-01R.expression.txt	3			
TARGET-10-PASKCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKCL-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASKCL-09B-01R	RNA	EFO	SRS1284377	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASKCL-09B-01R SJBALL002373_D1-TARGET-10-PASKCL-09B-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	37.6	SJBALL002373_D1-TARGET-10-PASKCL-09B-01	SRX1571439		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASKCL-09B-01R SJBALL002373_D1-TARGET-10-PASKCL-09B-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASKCL-09B-01R.fastq	SRR3162217	@dbgap@:reads/SRP011999/SRS1284377/SRX1571439/SRR3162217/SRR3162217.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASKGG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKGG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASKGG-09A-01R	RNA	EFO	SRS1284376	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASKGG-09A-01R SJALL015284_D1-TARGET-10-PASKGG-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	158	33.5	SJALL015284_D1-TARGET-10-PASKGG-09A-01D	SRX1571440		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASKGG-09A-01R SJALL015284_D1-TARGET-10-PASKGG-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASKGG-09A-01R.fastq	SRR3162218	@dbgap@:reads/SRP011999/SRS1284376/SRX1571440/SRR3162218/SRR3162218.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASKGG-09A-01R.expression.txt	3			
TARGET-10-PASKGG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKGG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASKGG-09A-01R	RNA	EFO	SRS1284376	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASKGG-09A-01R SJALL015284_D1-TARGET-10-PASKGG-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	158	33.5	SJALL015284_D1-TARGET-10-PASKGG-09A-01D	SRX1571440		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASKGG-09A-01R SJALL015284_D1-TARGET-10-PASKGG-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASKGG-09A-01R.fastq	SRR3162218	@dbgap@:reads/SRP011999/SRS1284376/SRX1571440/SRR3162218/SRR3162218.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKHT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKHT-03A-02R	RNA	EFO	SRS602194	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKHT-03A-02R A33626 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33626	SRX547653	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASKHT-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PASKHT-03A-02R A33626 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2193-1./A33626.fastq	SRR1797074	@dbgap@:reads/SRP011999/SRS602194/SRX547653/SRR1797074/SRR1797074.sra	1	"HIGH NON-GENIC CONTENT (intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_1_TGGCGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293027	@dbgap@:reads/SRP011999/SRS602194/SRX547653/SRR1293027/SRR1293027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASKHT-03A-02R.exon.quantification.txt	3			
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKHT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKHT-03A-02R	RNA	EFO	SRS602194	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKHT-03A-02R A33626 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33626	SRX547653	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASKHT-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PASKHT-03A-02R A33626 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2193-1./A33626.fastq	SRR1797074	@dbgap@:reads/SRP011999/SRS602194/SRX547653/SRR1797074/SRR1797074.sra	1	"HIGH NON-GENIC CONTENT (intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_1_TGGCGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293027	@dbgap@:reads/SRP011999/SRS602194/SRX547653/SRR1293027/SRR1293027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASKHT-03A-02R.gene.quantification.txt	3			
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKHT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKHT-03A-02R	RNA	EFO	SRS602194	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKHT-03A-02R A33626 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33626	SRX547653	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASKHT-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PASKHT-03A-02R A33626 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2193-1./A33626.fastq	SRR1797074	@dbgap@:reads/SRP011999/SRS602194/SRX547653/SRR1797074/SRR1797074.sra	1	"HIGH NON-GENIC CONTENT (intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_1_TGGCGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293027	@dbgap@:reads/SRP011999/SRS602194/SRX547653/SRR1293027/SRR1293027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASKHT-03A-02R.isoform.quantification.txt	3			
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKHT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKHT-03A-02R	RNA	EFO	SRS602194	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKHT-03A-02R A33626 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33626	SRX547653	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASKHT-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PASKHT-03A-02R A33626 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2193-1./A33626.fastq	SRR1797074	@dbgap@:reads/SRP011999/SRS602194/SRX547653/SRR1797074/SRR1797074.sra	1	"HIGH NON-GENIC CONTENT (intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_1_TGGCGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293027	@dbgap@:reads/SRP011999/SRS602194/SRX547653/SRR1293027/SRR1293027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASKHT-03A-02R.fusion.vcf	3			
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKHT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKHT-03A-02R	RNA	EFO	SRS602194	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKHT-03A-02R A33626 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33626	SRX547653	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASKHT-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PASKHT-03A-02R A33626 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2193-1./A33626.fastq	SRR1797074	@dbgap@:reads/SRP011999/SRS602194/SRX547653/SRR1797074/SRR1797074.sra	1	"HIGH NON-GENIC CONTENT (intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_1_TGGCGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293027	@dbgap@:reads/SRP011999/SRS602194/SRX547653/SRR1293027/SRR1293027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASKHT-03A-02R.indel.vcf	3			
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKHT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKHT-03A-02R	RNA	EFO	SRS602194	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASKHT-03A-02R A33626 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33626	SRX547653	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASKHT-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-22	TARGET-10-PASKHT-03A-02R A33626 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2193-1./A33626.fastq	SRR1797074	@dbgap@:reads/SRP011999/SRS602194/SRX547653/SRR1797074/SRR1797074.sra	1	"HIGH NON-GENIC CONTENT (intergenic reads > 15%)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C31WAACXX_1_TGGCGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293027	@dbgap@:reads/SRP011999/SRS602194/SRX547653/SRR1293027/SRR1293027.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PASKHT-03A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PASKIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASKIC-09A-01R	RNA	EFO	SRS1284375	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASKIC-09A-01R SJTALL001777_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	37.3	SJTALL001777_D1_RNASEQ_1	SRX1571441		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASKIC-09A-01R SJTALL001777_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASKIC-09A-01R.fastq	SRR3162219	@dbgap@:reads/SRP011999/SRS1284375/SRX1571441/SRR3162219/SRR3162219.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASKIC-09A-01R.expression.txt	3			
TARGET-10-PASKIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASKIC-09A-01R	RNA	EFO	SRS1284375	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASKIC-09A-01R SJTALL001777_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	37.3	SJTALL001777_D1_RNASEQ_1	SRX1571441		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASKIC-09A-01R SJTALL001777_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASKIC-09A-01R.fastq	SRR3162219	@dbgap@:reads/SRP011999/SRS1284375/SRX1571441/SRR3162219/SRR3162219.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASKRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKRN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASKRN-03A-01R	RNA	EFO	SRS1284374	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASKRN-03A-01R SJTALL002042_D1-TARGET-10-PASKRN-03A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	40.1	SJTALL002042_D1-TARGET-10-PASKRN-03A-01	SRX1571442		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASKRN-03A-01R SJTALL002042_D1-TARGET-10-PASKRN-03A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASKRN-03A-01R.fastq	SRR3162220	@dbgap@:reads/SRP011999/SRS1284374/SRX1571442/SRR3162220/SRR3162220.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASKRN-03A-01R.expression.txt	3			
TARGET-10-PASKRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKRN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASKRN-03A-01R	RNA	EFO	SRS1284374	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASKRN-03A-01R SJTALL002042_D1-TARGET-10-PASKRN-03A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	40.1	SJTALL002042_D1-TARGET-10-PASKRN-03A-01	SRX1571442		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASKRN-03A-01R SJTALL002042_D1-TARGET-10-PASKRN-03A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASKRN-03A-01R.fastq	SRR3162220	@dbgap@:reads/SRP011999/SRS1284374/SRX1571442/SRR3162220/SRR3162220.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASKSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASKSY-09A-01R	RNA	EFO	SRS1284372	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASKSY-09A-01R SJALL016433_D1-TARGET-10-PASKSY-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	35.4	SJALL016433_D1-TARGET-10-PASKSY-09A-01	SRX1571443		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASKSY-09A-01R SJALL016433_D1-TARGET-10-PASKSY-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASKSY-09A-01R.fastq	SRR3162221	@dbgap@:reads/SRP011999/SRS1284372/SRX1571443/SRR3162221/SRR3162221.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASKSY-09A-01R.expression.txt	3			
TARGET-10-PASKSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASKSY-09A-01R	RNA	EFO	SRS1284372	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASKSY-09A-01R SJALL016433_D1-TARGET-10-PASKSY-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	35.4	SJALL016433_D1-TARGET-10-PASKSY-09A-01	SRX1571443		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASKSY-09A-01R SJALL016433_D1-TARGET-10-PASKSY-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASKSY-09A-01R.fastq	SRR3162221	@dbgap@:reads/SRP011999/SRS1284372/SRX1571443/SRR3162221/SRR3162221.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASKTG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKTG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASKTG-09A-01R	RNA	EFO	SRS1284373	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASKTG-09A-01R SJALL015285_D1-TARGET-10-PASKTG-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	37.2	SJALL015285_D1-TARGET-10-PASKTG-09A-01D	SRX1571444		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASKTG-09A-01R SJALL015285_D1-TARGET-10-PASKTG-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASKTG-09A-01R.fastq	SRR3162222	@dbgap@:reads/SRP011999/SRS1284373/SRX1571444/SRR3162222/SRR3162222.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASKTG-09A-01R.expression.txt	3			
TARGET-10-PASKTG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKTG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASKTG-09A-01R	RNA	EFO	SRS1284373	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASKTG-09A-01R SJALL015285_D1-TARGET-10-PASKTG-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	37.2	SJALL015285_D1-TARGET-10-PASKTG-09A-01D	SRX1571444		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASKTG-09A-01R SJALL015285_D1-TARGET-10-PASKTG-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASKTG-09A-01R.fastq	SRR3162222	@dbgap@:reads/SRP011999/SRS1284373/SRX1571444/SRR3162222/SRR3162222.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASKXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKXN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASKXN-09A-01R	RNA	EFO	SRS1284371	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASKXN-09A-01R SJTALL002050_D1-TARGET-10-PASKXN-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	147	29.2	SJTALL002050_D1-TARGET-10-PASKXN-09A-01	SRX1571445		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASKXN-09A-01R SJTALL002050_D1-TARGET-10-PASKXN-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASKXN-09A-01R.fastq	SRR3162223	@dbgap@:reads/SRP011999/SRS1284371/SRX1571445/SRR3162223/SRR3162223.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASKXN-09A-01R.expression.txt	3			
TARGET-10-PASKXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKXN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASKXN-09A-01R	RNA	EFO	SRS1284371	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASKXN-09A-01R SJTALL002050_D1-TARGET-10-PASKXN-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	147	29.2	SJTALL002050_D1-TARGET-10-PASKXN-09A-01	SRX1571445		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASKXN-09A-01R SJTALL002050_D1-TARGET-10-PASKXN-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASKXN-09A-01R.fastq	SRR3162223	@dbgap@:reads/SRP011999/SRS1284371/SRX1571445/SRR3162223/SRR3162223.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASLAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASLAB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASLAB-09A-01R	RNA	EFO	SRS1284370	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASLAB-09A-01R SJTALL022096_D2-TARGET-10-PASLAB-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	37.3	SJTALL022096_D2-TARGET-10-PASLAB-09A-01	SRX1571446		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASLAB-09A-01R SJTALL022096_D2-TARGET-10-PASLAB-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASLAB-09A-01R.fastq	SRR3162224	@dbgap@:reads/SRP011999/SRS1284370/SRX1571446/SRR3162224/SRR3162224.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASLAB-09A-01R.expression.txt	3			
TARGET-10-PASLAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASLAB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASLAB-09A-01R	RNA	EFO	SRS1284370	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASLAB-09A-01R SJTALL022096_D2-TARGET-10-PASLAB-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	37.3	SJTALL022096_D2-TARGET-10-PASLAB-09A-01	SRX1571446		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASLAB-09A-01R SJTALL022096_D2-TARGET-10-PASLAB-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASLAB-09A-01R.fastq	SRR3162224	@dbgap@:reads/SRP011999/SRS1284370/SRX1571446/SRR3162224/SRR3162224.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASLBB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASLBB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASLBB-09A-01R	RNA	EFO	SRS1284369	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASLBB-09A-01R SJTALL001786_D1-TARGET-10-PASLBB-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	156	32.3	SJTALL001786_D1-TARGET-10-PASLBB-09A-01	SRX1571447		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASLBB-09A-01R SJTALL001786_D1-TARGET-10-PASLBB-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASLBB-09A-01R.fastq	SRR3162225	@dbgap@:reads/SRP011999/SRS1284369/SRX1571447/SRR3162225/SRR3162225.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASLBB-09A-01R.expression.txt	3			
TARGET-10-PASLBB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASLBB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASLBB-09A-01R	RNA	EFO	SRS1284369	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASLBB-09A-01R SJTALL001786_D1-TARGET-10-PASLBB-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	156	32.3	SJTALL001786_D1-TARGET-10-PASLBB-09A-01	SRX1571447		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASLBB-09A-01R SJTALL001786_D1-TARGET-10-PASLBB-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASLBB-09A-01R.fastq	SRR3162225	@dbgap@:reads/SRP011999/SRS1284369/SRX1571447/SRR3162225/SRR3162225.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASLZM-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLZM-40A-01R	RNA	EFO	SRS602168	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLZM-40A-01R A32767 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32767	SRX547596	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASLZM-40A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PASLZM-40A-01R A32767 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2293-1..1/A32767.fastq	SRR1797128	@dbgap@:reads/SRP011999/SRS602168/SRX547596/SRR1797128/SRR1797128.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_4_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292949	@dbgap@:reads/SRP011999/SRS602168/SRX547596/SRR1292949/SRR1292949.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASLZM-40A-01R.exon.quantification.txt	3			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASLZM-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLZM-40A-01R	RNA	EFO	SRS602168	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLZM-40A-01R A32767 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32767	SRX547596	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASLZM-40A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PASLZM-40A-01R A32767 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2293-1..1/A32767.fastq	SRR1797128	@dbgap@:reads/SRP011999/SRS602168/SRX547596/SRR1797128/SRR1797128.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_4_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292949	@dbgap@:reads/SRP011999/SRS602168/SRX547596/SRR1292949/SRR1292949.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASLZM-40A-01R.gene.quantification.txt	3			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASLZM-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLZM-40A-01R	RNA	EFO	SRS602168	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLZM-40A-01R A32767 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32767	SRX547596	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASLZM-40A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PASLZM-40A-01R A32767 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2293-1..1/A32767.fastq	SRR1797128	@dbgap@:reads/SRP011999/SRS602168/SRX547596/SRR1797128/SRR1797128.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_4_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292949	@dbgap@:reads/SRP011999/SRS602168/SRX547596/SRR1292949/SRR1292949.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASLZM-40A-01R.isoform.quantification.txt	3			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASLZM-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLZM-40A-01R	RNA	EFO	SRS602168	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLZM-40A-01R A32767 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32767	SRX547596	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASLZM-40A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PASLZM-40A-01R A32767 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2293-1..1/A32767.fastq	SRR1797128	@dbgap@:reads/SRP011999/SRS602168/SRX547596/SRR1797128/SRR1797128.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_4_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292949	@dbgap@:reads/SRP011999/SRS602168/SRX547596/SRR1292949/SRR1292949.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASLZM-40A-01R.fusion.vcf	3			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASLZM-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLZM-40A-01R	RNA	EFO	SRS602168	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLZM-40A-01R A32767 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32767	SRX547596	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASLZM-40A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PASLZM-40A-01R A32767 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2293-1..1/A32767.fastq	SRR1797128	@dbgap@:reads/SRP011999/SRS602168/SRX547596/SRR1797128/SRR1797128.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_4_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292949	@dbgap@:reads/SRP011999/SRS602168/SRX547596/SRR1292949/SRR1292949.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASLZM-40A-01R.indel.vcf	3			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASLZM-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLZM-40A-01R	RNA	EFO	SRS602168	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLZM-40A-01R A32767 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32767	SRX547596	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASLZM-40A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PASLZM-40A-01R A32767 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2293-1..1/A32767.fastq	SRR1797128	@dbgap@:reads/SRP011999/SRS602168/SRX547596/SRR1797128/SRR1797128.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_4_CCTTAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292949	@dbgap@:reads/SRP011999/SRS602168/SRX547596/SRR1292949/SRR1292949.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PASLZM-40A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PASMHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASMHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASMHF-09A-01R	RNA	EFO	SRS1284368	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASMHF-09A-01R SJALL015624_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	38.3	SJALL015624_D1_RNASEQ_1	SRX1571448		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASMHF-09A-01R SJALL015624_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASMHF-09A-01R.fastq	SRR3162226	@dbgap@:reads/SRP011999/SRS1284368/SRX1571448/SRR3162226/SRR3162226.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASMHF-09A-01R.expression.txt	3			
TARGET-10-PASMHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASMHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASMHF-09A-01R	RNA	EFO	SRS1284368	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASMHF-09A-01R SJALL015624_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	38.3	SJALL015624_D1_RNASEQ_1	SRX1571448		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASMHF-09A-01R SJALL015624_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASMHF-09A-01R.fastq	SRR3162226	@dbgap@:reads/SRP011999/SRS1284368/SRX1571448/SRR3162226/SRR3162226.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASMIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASMIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASMIC-09A-01R	RNA	EFO	SRS1284367	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASMIC-09A-01R SJALL015625_D1-TARGET-10-PASMIC-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	36.1	SJALL015625_D1-TARGET-10-PASMIC-09A-01	SRX1571449		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASMIC-09A-01R SJALL015625_D1-TARGET-10-PASMIC-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASMIC-09A-01R.fastq	SRR3162227	@dbgap@:reads/SRP011999/SRS1284367/SRX1571449/SRR3162227/SRR3162227.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASMIC-09A-01R.expression.txt	3			
TARGET-10-PASMIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASMIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASMIC-09A-01R	RNA	EFO	SRS1284367	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASMIC-09A-01R SJALL015625_D1-TARGET-10-PASMIC-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	36.1	SJALL015625_D1-TARGET-10-PASMIC-09A-01	SRX1571449		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASMIC-09A-01R SJALL015625_D1-TARGET-10-PASMIC-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASMIC-09A-01R.fastq	SRR3162227	@dbgap@:reads/SRP011999/SRS1284367/SRX1571449/SRR3162227/SRR3162227.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASMNV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASMNV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASMNV-09A-01R	RNA	EFO	SRS1284366	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASMNV-09A-01R SJALL015626_D1-TARGET-10-PASMNV-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	40.6	SJALL015626_D1-TARGET-10-PASMNV-09A-01	SRX1571450		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASMNV-09A-01R SJALL015626_D1-TARGET-10-PASMNV-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASMNV-09A-01R.fastq	SRR3162228	@dbgap@:reads/SRP011999/SRS1284366/SRX1571450/SRR3162228/SRR3162228.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASMNV-09A-01R.expression.txt	3			
TARGET-10-PASMNV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASMNV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASMNV-09A-01R	RNA	EFO	SRS1284366	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASMNV-09A-01R SJALL015626_D1-TARGET-10-PASMNV-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	40.6	SJALL015626_D1-TARGET-10-PASMNV-09A-01	SRX1571450		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASMNV-09A-01R SJALL015626_D1-TARGET-10-PASMNV-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASMNV-09A-01R.fastq	SRR3162228	@dbgap@:reads/SRP011999/SRS1284366/SRX1571450/SRR3162228/SRR3162228.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASNEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASNEH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASNEH-09A-01R	RNA	EFO	SRS1284365	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASNEH-09A-01R SJALL015627_D1-TARGET-10-PASNEH-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	38.5	SJALL015627_D1-TARGET-10-PASNEH-09A-01	SRX1571451		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASNEH-09A-01R SJALL015627_D1-TARGET-10-PASNEH-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASNEH-09A-01R.fastq	SRR3162229	@dbgap@:reads/SRP011999/SRS1284365/SRX1571451/SRR3162229/SRR3162229.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASNEH-09A-01R.expression.txt	3			
TARGET-10-PASNEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASNEH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASNEH-09A-01R	RNA	EFO	SRS1284365	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASNEH-09A-01R SJALL015627_D1-TARGET-10-PASNEH-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	38.5	SJALL015627_D1-TARGET-10-PASNEH-09A-01	SRX1571451		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASNEH-09A-01R SJALL015627_D1-TARGET-10-PASNEH-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASNEH-09A-01R.fastq	SRR3162229	@dbgap@:reads/SRP011999/SRS1284365/SRX1571451/SRR3162229/SRR3162229.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASNTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASNTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASNTZ-09A-01R	RNA	EFO	SRS1284364	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASNTZ-09A-01R SJALL016434_D1-TARGET-10-PASNTZ-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	39.7	SJALL016434_D1-TARGET-10-PASNTZ-09A-01	SRX1571452		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASNTZ-09A-01R SJALL016434_D1-TARGET-10-PASNTZ-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASNTZ-09A-01R.fastq	SRR3162230	@dbgap@:reads/SRP011999/SRS1284364/SRX1571452/SRR3162230/SRR3162230.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASNTZ-09A-01R.expression.txt	3			
TARGET-10-PASNTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASNTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASNTZ-09A-01R	RNA	EFO	SRS1284364	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASNTZ-09A-01R SJALL016434_D1-TARGET-10-PASNTZ-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	39.7	SJALL016434_D1-TARGET-10-PASNTZ-09A-01	SRX1571452		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASNTZ-09A-01R SJALL016434_D1-TARGET-10-PASNTZ-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASNTZ-09A-01R.fastq	SRR3162230	@dbgap@:reads/SRP011999/SRS1284364/SRX1571452/SRR3162230/SRR3162230.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASPBU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASPBU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASPBU-09A-01R	RNA	EFO	SRS1284363	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASPBU-09A-01R SJALL015277_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	39.3	SJALL015277_D1_RNASEQ_1	SRX1571453		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASPBU-09A-01R SJALL015277_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASPBU-09A-01R.fastq	SRR3162231	@dbgap@:reads/SRP011999/SRS1284363/SRX1571453/SRR3162231/SRR3162231.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASPBU-09A-01R.expression.txt	3			
TARGET-10-PASPBU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASPBU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASPBU-09A-01R	RNA	EFO	SRS1284363	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASPBU-09A-01R SJALL015277_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	39.3	SJALL015277_D1_RNASEQ_1	SRX1571453		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASPBU-09A-01R SJALL015277_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASPBU-09A-01R.fastq	SRR3162231	@dbgap@:reads/SRP011999/SRS1284363/SRX1571453/SRR3162231/SRR3162231.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASPDS-09A-01R	RNA	EFO	SRS1284362	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASPDS-09A-01R SJTALL022098_D2-TARGET-10-PASPDS-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	35.8	SJTALL022098_D2-TARGET-10-PASPDS-09A-01	SRX1571454		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASPDS-09A-01R SJTALL022098_D2-TARGET-10-PASPDS-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASPDS-09A-01R.fastq	SRR3162232	@dbgap@:reads/SRP011999/SRS1284362/SRX1571454/SRR3162232/SRR3162232.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASPDS-09A-01R.expression.txt	3			
TARGET-10-PASPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASPDS-09A-01R	RNA	EFO	SRS1284362	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASPDS-09A-01R SJTALL022098_D2-TARGET-10-PASPDS-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	35.8	SJTALL022098_D2-TARGET-10-PASPDS-09A-01	SRX1571454		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASPDS-09A-01R SJTALL022098_D2-TARGET-10-PASPDS-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASPDS-09A-01R.fastq	SRR3162232	@dbgap@:reads/SRP011999/SRS1284362/SRX1571454/SRR3162232/SRR3162232.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASPPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASPPN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASPPN-09A-01R	RNA	EFO	SRS1284361	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASPPN-09A-01R SJTALL022100_D2-TARGET-10-PASPPN-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	38.1	SJTALL022100_D2-TARGET-10-PASPPN-09A-01	SRX1571455		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASPPN-09A-01R SJTALL022100_D2-TARGET-10-PASPPN-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASPPN-09A-01R.fastq	SRR3162233	@dbgap@:reads/SRP011999/SRS1284361/SRX1571455/SRR3162233/SRR3162233.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASPPN-09A-01R.expression.txt	3			
TARGET-10-PASPPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASPPN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASPPN-09A-01R	RNA	EFO	SRS1284361	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASPPN-09A-01R SJTALL022100_D2-TARGET-10-PASPPN-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	38.1	SJTALL022100_D2-TARGET-10-PASPPN-09A-01	SRX1571455		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASPPN-09A-01R SJTALL022100_D2-TARGET-10-PASPPN-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASPPN-09A-01R.fastq	SRR3162233	@dbgap@:reads/SRP011999/SRS1284361/SRX1571455/SRR3162233/SRR3162233.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASRCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASRCV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASRCV-09A-01R	RNA	EFO	SRS1284360	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASRCV-09A-01R SJTALL001785_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	36.4	SJTALL001785_D1_RNASEQ_1	SRX1571456		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASRCV-09A-01R SJTALL001785_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASRCV-09A-01R.fastq	SRR3162234	@dbgap@:reads/SRP011999/SRS1284360/SRX1571456/SRR3162234/SRR3162234.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASRCV-09A-01R.expression.txt	3			
TARGET-10-PASRCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASRCV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASRCV-09A-01R	RNA	EFO	SRS1284360	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASRCV-09A-01R SJTALL001785_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	36.4	SJTALL001785_D1_RNASEQ_1	SRX1571456		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASRCV-09A-01R SJTALL001785_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASRCV-09A-01R.fastq	SRR3162234	@dbgap@:reads/SRP011999/SRS1284360/SRX1571456/SRR3162234/SRR3162234.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASRMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASRMM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASRMM-09A-01R	RNA	EFO	SRS1284359	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASRMM-09A-01R SJALL015628_D1-TARGET-10-PASRMM-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	36.4	SJALL015628_D1-TARGET-10-PASRMM-09A-01	SRX1571457		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASRMM-09A-01R SJALL015628_D1-TARGET-10-PASRMM-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASRMM-09A-01R.fastq	SRR3162235	@dbgap@:reads/SRP011999/SRS1284359/SRX1571457/SRR3162235/SRR3162235.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASRMM-09A-01R.expression.txt	3			
TARGET-10-PASRMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASRMM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASRMM-09A-01R	RNA	EFO	SRS1284359	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASRMM-09A-01R SJALL015628_D1-TARGET-10-PASRMM-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	36.4	SJALL015628_D1-TARGET-10-PASRMM-09A-01	SRX1571457		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASRMM-09A-01R SJALL015628_D1-TARGET-10-PASRMM-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASRMM-09A-01R.fastq	SRR3162235	@dbgap@:reads/SRP011999/SRS1284359/SRX1571457/SRR3162235/SRR3162235.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASSEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASSEF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASSEF-09A-01R	RNA	EFO	SRS1284358	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASSEF-09A-01R SJALL015629_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	40.2	SJALL015629_D1_RNASEQ_1	SRX1571458		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASSEF-09A-01R SJALL015629_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASSEF-09A-01R.fastq	SRR3162236	@dbgap@:reads/SRP011999/SRS1284358/SRX1571458/SRR3162236/SRR3162236.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASSEF-09A-01R.expression.txt	3			
TARGET-10-PASSEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASSEF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASSEF-09A-01R	RNA	EFO	SRS1284358	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASSEF-09A-01R SJALL015629_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	40.2	SJALL015629_D1_RNASEQ_1	SRX1571458		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASSEF-09A-01R SJALL015629_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASSEF-09A-01R.fastq	SRR3162236	@dbgap@:reads/SRP011999/SRS1284358/SRX1571458/SRR3162236/SRR3162236.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASSHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASSHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASSHC-09A-01R	RNA	EFO	SRS1284357	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASSHC-09A-01R SJALL015630_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	40.6	SJALL015630_D1_RNASEQ_1	SRX1571459		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASSHC-09A-01R SJALL015630_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASSHC-09A-01R.fastq	SRR3162237	@dbgap@:reads/SRP011999/SRS1284357/SRX1571459/SRR3162237/SRR3162237.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASSHC-09A-01R.expression.txt	3			
TARGET-10-PASSHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASSHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASSHC-09A-01R	RNA	EFO	SRS1284357	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASSHC-09A-01R SJALL015630_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	40.6	SJALL015630_D1_RNASEQ_1	SRX1571459		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASSHC-09A-01R SJALL015630_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASSHC-09A-01R.fastq	SRR3162237	@dbgap@:reads/SRP011999/SRS1284357/SRX1571459/SRR3162237/SRR3162237.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASSPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASSPP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASSPP-09A-01R	RNA	EFO	SRS1284356	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASSPP-09A-01R SJALL015631_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	37.9	SJALL015631_D1_RNASEQ_1	SRX1571460		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASSPP-09A-01R SJALL015631_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASSPP-09A-01R.fastq	SRR3162238	@dbgap@:reads/SRP011999/SRS1284356/SRX1571460/SRR3162238/SRR3162238.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASSPP-09A-01R.expression.txt	3			
TARGET-10-PASSPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASSPP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASSPP-09A-01R	RNA	EFO	SRS1284356	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASSPP-09A-01R SJALL015631_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	37.9	SJALL015631_D1_RNASEQ_1	SRX1571460		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASSPP-09A-01R SJALL015631_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASSPP-09A-01R.fastq	SRR3162238	@dbgap@:reads/SRP011999/SRS1284356/SRX1571460/SRR3162238/SRR3162238.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASSRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASSRP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASSRP-09A-01R	RNA	EFO	SRS1284355	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASSRP-09A-01R SJALL015632_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	38.1	SJALL015632_D1_RNASEQ_1	SRX1571461		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASSRP-09A-01R SJALL015632_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASSRP-09A-01R.fastq	SRR3162239	@dbgap@:reads/SRP011999/SRS1284355/SRX1571461/SRR3162239/SRR3162239.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASSRP-09A-01R.expression.txt	3			
TARGET-10-PASSRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASSRP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASSRP-09A-01R	RNA	EFO	SRS1284355	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASSRP-09A-01R SJALL015632_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	38.1	SJALL015632_D1_RNASEQ_1	SRX1571461		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASSRP-09A-01R SJALL015632_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASSRP-09A-01R.fastq	SRR3162239	@dbgap@:reads/SRP011999/SRS1284355/SRX1571461/SRR3162239/SRR3162239.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASSSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASSSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASSSR-09A-01R	RNA	EFO	SRS1284354	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASSSR-09A-01R SJALL015633_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	158	34.8	SJALL015633_D1_RNASEQ_1	SRX1571462		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASSSR-09A-01R SJALL015633_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASSSR-09A-01R.fastq	SRR3162240	@dbgap@:reads/SRP011999/SRS1284354/SRX1571462/SRR3162240/SRR3162240.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASSSR-09A-01R.expression.txt	3			
TARGET-10-PASSSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASSSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASSSR-09A-01R	RNA	EFO	SRS1284354	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASSSR-09A-01R SJALL015633_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	158	34.8	SJALL015633_D1_RNASEQ_1	SRX1571462		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASSSR-09A-01R SJALL015633_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASSSR-09A-01R.fastq	SRR3162240	@dbgap@:reads/SRP011999/SRS1284354/SRX1571462/SRR3162240/SRR3162240.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASSXJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASSXJ-03A-01R	RNA	EFO	SRS602134	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASSXJ-03A-01R A32770 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32770	SRX547609	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASSXJ-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PASSXJ-03A-01R A32770 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2296-1..1/A32770.fastq	SRR1797078	@dbgap@:reads/SRP011999/SRS602134/SRX547609/SRR1797078/SRR1797078.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_7_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292973	@dbgap@:reads/SRP011999/SRS602134/SRX547609/SRR1292973/SRR1292973.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASSXJ-03A-01R.exon.quantification.txt	3			
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASSXJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASSXJ-03A-01R	RNA	EFO	SRS602134	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASSXJ-03A-01R A32770 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32770	SRX547609	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASSXJ-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PASSXJ-03A-01R A32770 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2296-1..1/A32770.fastq	SRR1797078	@dbgap@:reads/SRP011999/SRS602134/SRX547609/SRR1797078/SRR1797078.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_7_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292973	@dbgap@:reads/SRP011999/SRS602134/SRX547609/SRR1292973/SRR1292973.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASSXJ-03A-01R.gene.quantification.txt	3			
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASSXJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASSXJ-03A-01R	RNA	EFO	SRS602134	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASSXJ-03A-01R A32770 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32770	SRX547609	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASSXJ-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PASSXJ-03A-01R A32770 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2296-1..1/A32770.fastq	SRR1797078	@dbgap@:reads/SRP011999/SRS602134/SRX547609/SRR1797078/SRR1797078.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_7_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292973	@dbgap@:reads/SRP011999/SRS602134/SRX547609/SRR1292973/SRR1292973.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASSXJ-03A-01R.isoform.quantification.txt	3			
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASSXJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASSXJ-03A-01R	RNA	EFO	SRS602134	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASSXJ-03A-01R A32770 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32770	SRX547609	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASSXJ-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PASSXJ-03A-01R A32770 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2296-1..1/A32770.fastq	SRR1797078	@dbgap@:reads/SRP011999/SRS602134/SRX547609/SRR1797078/SRR1797078.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_7_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292973	@dbgap@:reads/SRP011999/SRS602134/SRX547609/SRR1292973/SRR1292973.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASSXJ-03A-01R.fusion.vcf	3			
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASSXJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASSXJ-03A-01R	RNA	EFO	SRS602134	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASSXJ-03A-01R A32770 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32770	SRX547609	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASSXJ-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PASSXJ-03A-01R A32770 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2296-1..1/A32770.fastq	SRR1797078	@dbgap@:reads/SRP011999/SRS602134/SRX547609/SRR1797078/SRR1797078.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_7_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292973	@dbgap@:reads/SRP011999/SRS602134/SRX547609/SRR1292973/SRR1292973.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASSXJ-03A-01R.indel.vcf	3			
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASSXJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASSXJ-03A-01R	RNA	EFO	SRS602134	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASSXJ-03A-01R A32770 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32770	SRX547609	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASSXJ-03A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PASSXJ-03A-01R A32770 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2296-1..1/A32770.fastq	SRR1797078	@dbgap@:reads/SRP011999/SRS602134/SRX547609/SRR1797078/SRR1797078.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_7_TCGAAG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292973	@dbgap@:reads/SRP011999/SRS602134/SRX547609/SRR1292973/SRR1292973.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PASSXJ-03A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PASSZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASSZA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASSZA-09A-01R	RNA	EFO	SRS1284353	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASSZA-09A-01R SJALL015634_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	37.6	SJALL015634_D1_RNASEQ_1	SRX1571463		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASSZA-09A-01R SJALL015634_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASSZA-09A-01R.fastq	SRR3162241	@dbgap@:reads/SRP011999/SRS1284353/SRX1571463/SRR3162241/SRR3162241.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASSZA-09A-01R.expression.txt	3			
TARGET-10-PASSZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASSZA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASSZA-09A-01R	RNA	EFO	SRS1284353	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASSZA-09A-01R SJALL015634_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	37.6	SJALL015634_D1_RNASEQ_1	SRX1571463		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASSZA-09A-01R SJALL015634_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASSZA-09A-01R.fastq	SRR3162241	@dbgap@:reads/SRP011999/SRS1284353/SRX1571463/SRR3162241/SRR3162241.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASTDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASTDU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASTDU-09A-01R	RNA	EFO	SRS1284352	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASTDU-09A-01R SJALL016435_D1-TARGET-10-PASTDU-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	34.8	SJALL016435_D1-TARGET-10-PASTDU-09A-01	SRX1571464		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASTDU-09A-01R SJALL016435_D1-TARGET-10-PASTDU-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASTDU-09A-01R.fastq	SRR3162242	@dbgap@:reads/SRP011999/SRS1284352/SRX1571464/SRR3162242/SRR3162242.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASTDU-09A-01R.expression.txt	3			
TARGET-10-PASTDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASTDU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASTDU-09A-01R	RNA	EFO	SRS1284352	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASTDU-09A-01R SJALL016435_D1-TARGET-10-PASTDU-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	34.8	SJALL016435_D1-TARGET-10-PASTDU-09A-01	SRX1571464		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASTDU-09A-01R SJALL016435_D1-TARGET-10-PASTDU-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASTDU-09A-01R.fastq	SRR3162242	@dbgap@:reads/SRP011999/SRS1284352/SRX1571464/SRR3162242/SRR3162242.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASTHE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASTHE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASTHE-09A-01R	RNA	EFO	SRS1284351	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASTHE-09A-01R SJALL015635_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	37.4	SJALL015635_D1_RNASEQ_1	SRX1571465		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASTHE-09A-01R SJALL015635_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASTHE-09A-01R.fastq	SRR3162243	@dbgap@:reads/SRP011999/SRS1284351/SRX1571465/SRR3162243/SRR3162243.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASTHE-09A-01R.expression.txt	3			
TARGET-10-PASTHE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASTHE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASTHE-09A-01R	RNA	EFO	SRS1284351	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASTHE-09A-01R SJALL015635_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	37.4	SJALL015635_D1_RNASEQ_1	SRX1571465		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASTHE-09A-01R SJALL015635_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASTHE-09A-01R.fastq	SRR3162243	@dbgap@:reads/SRP011999/SRS1284351/SRX1571465/SRR3162243/SRR3162243.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASTLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASTLP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASTLP-09A-01R	RNA	EFO	SRS1284350	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASTLP-09A-01R SJTALL002065_D1-TARGET-10-PASTLP-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	37.3	SJTALL002065_D1-TARGET-10-PASTLP-09A-01	SRX1571466		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASTLP-09A-01R SJTALL002065_D1-TARGET-10-PASTLP-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASTLP-09A-01R.fastq	SRR3162244	@dbgap@:reads/SRP011999/SRS1284350/SRX1571466/SRR3162244/SRR3162244.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASTLP-09A-01R.expression.txt	3			
TARGET-10-PASTLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASTLP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASTLP-09A-01R	RNA	EFO	SRS1284350	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASTLP-09A-01R SJTALL002065_D1-TARGET-10-PASTLP-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	37.3	SJTALL002065_D1-TARGET-10-PASTLP-09A-01	SRX1571466		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASTLP-09A-01R SJTALL002065_D1-TARGET-10-PASTLP-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASTLP-09A-01R.fastq	SRR3162244	@dbgap@:reads/SRP011999/SRS1284350/SRX1571466/SRR3162244/SRR3162244.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASTPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASTPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASTPT-09A-01R	RNA	EFO	SRS1284349	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASTPT-09A-01R SJBALL001782_D1-TARGET-10-PASTPT-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	38	SJBALL001782_D1-TARGET-10-PASTPT-09A-01	SRX1571467		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASTPT-09A-01R SJBALL001782_D1-TARGET-10-PASTPT-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASTPT-09A-01R.fastq	SRR3162245	@dbgap@:reads/SRP011999/SRS1284349/SRX1571467/SRR3162245/SRR3162245.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASTPT-09A-01R.expression.txt	3			
TARGET-10-PASTPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASTPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASTPT-09A-01R	RNA	EFO	SRS1284349	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASTPT-09A-01R SJBALL001782_D1-TARGET-10-PASTPT-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	38	SJBALL001782_D1-TARGET-10-PASTPT-09A-01	SRX1571467		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASTPT-09A-01R SJBALL001782_D1-TARGET-10-PASTPT-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASTPT-09A-01R.fastq	SRR3162245	@dbgap@:reads/SRP011999/SRS1284349/SRX1571467/SRR3162245/SRR3162245.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASTXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASTXU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASTXU-09A-01R	RNA	EFO	SRS1284347	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASTXU-09A-01R SJTALL002069_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	39.1	SJTALL002069_D1_RNASEQ_1	SRX1571468		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASTXU-09A-01R SJTALL002069_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASTXU-09A-01R.fastq	SRR3162246	@dbgap@:reads/SRP011999/SRS1284347/SRX1571468/SRR3162246/SRR3162246.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASTXU-09A-01R.expression.txt	3			
TARGET-10-PASTXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASTXU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASTXU-09A-01R	RNA	EFO	SRS1284347	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASTXU-09A-01R SJTALL002069_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	39.1	SJTALL002069_D1_RNASEQ_1	SRX1571468		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASTXU-09A-01R SJTALL002069_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASTXU-09A-01R.fastq	SRR3162246	@dbgap@:reads/SRP011999/SRS1284347/SRX1571468/SRR3162246/SRR3162246.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASUBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUBW-09A-01R	RNA	EFO	SRS602119	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUBW-09A-01R A32781 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32781	SRX547599	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASUBW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PASUBW-09A-01R A32781 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2295-1..1/A32781.fastq	SRR1791059	@dbgap@:reads/SRP011999/SRS602119/SRX547599/SRR1791059/SRR1791059.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_6_ACTTGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292961	@dbgap@:reads/SRP011999/SRS602119/SRX547599/SRR1292961/SRR1292961.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASUBW-09A-01R.exon.quantification.txt	3			
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASUBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUBW-09A-01R	RNA	EFO	SRS602119	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUBW-09A-01R A32781 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32781	SRX547599	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASUBW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PASUBW-09A-01R A32781 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2295-1..1/A32781.fastq	SRR1791059	@dbgap@:reads/SRP011999/SRS602119/SRX547599/SRR1791059/SRR1791059.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_6_ACTTGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292961	@dbgap@:reads/SRP011999/SRS602119/SRX547599/SRR1292961/SRR1292961.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASUBW-09A-01R.gene.quantification.txt	3			
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASUBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUBW-09A-01R	RNA	EFO	SRS602119	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUBW-09A-01R A32781 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32781	SRX547599	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASUBW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PASUBW-09A-01R A32781 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2295-1..1/A32781.fastq	SRR1791059	@dbgap@:reads/SRP011999/SRS602119/SRX547599/SRR1791059/SRR1791059.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_6_ACTTGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292961	@dbgap@:reads/SRP011999/SRS602119/SRX547599/SRR1292961/SRR1292961.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASUBW-09A-01R.isoform.quantification.txt	3			
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASUBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUBW-09A-01R	RNA	EFO	SRS602119	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUBW-09A-01R A32781 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32781	SRX547599	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASUBW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PASUBW-09A-01R A32781 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2295-1..1/A32781.fastq	SRR1791059	@dbgap@:reads/SRP011999/SRS602119/SRX547599/SRR1791059/SRR1791059.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_6_ACTTGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292961	@dbgap@:reads/SRP011999/SRS602119/SRX547599/SRR1292961/SRR1292961.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASUBW-09A-01R.fusion.vcf	3			
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASUBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUBW-09A-01R	RNA	EFO	SRS602119	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUBW-09A-01R A32781 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32781	SRX547599	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASUBW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PASUBW-09A-01R A32781 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2295-1..1/A32781.fastq	SRR1791059	@dbgap@:reads/SRP011999/SRS602119/SRX547599/SRR1791059/SRR1791059.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_6_ACTTGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292961	@dbgap@:reads/SRP011999/SRS602119/SRX547599/SRR1292961/SRR1292961.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASUBW-09A-01R.indel.vcf	3			
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASUBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUBW-09A-01R	RNA	EFO	SRS602119	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUBW-09A-01R A32781 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32781	SRX547599	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASUBW-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PASUBW-09A-01R A32781 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2295-1..1/A32781.fastq	SRR1791059	@dbgap@:reads/SRP011999/SRS602119/SRX547599/SRR1791059/SRR1791059.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_6_ACTTGA_withJunctionsOnGenome_dupsFlagged.bam	SRR1292961	@dbgap@:reads/SRP011999/SRS602119/SRX547599/SRR1292961/SRR1292961.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PASUBW-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PASUGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASUGC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASUGC-09A-01R	RNA	EFO	SRS1284348	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASUGC-09A-01R SJTALL001780_D1-TARGET-10-PASUGC-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	38.8	SJTALL001780_D1-TARGET-10-PASUGC-09A-01	SRX1571469		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASUGC-09A-01R SJTALL001780_D1-TARGET-10-PASUGC-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASUGC-09A-01R.fastq	SRR3162247	@dbgap@:reads/SRP011999/SRS1284348/SRX1571469/SRR3162247/SRR3162247.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASUGC-09A-01R.expression.txt	3			
TARGET-10-PASUGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASUGC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASUGC-09A-01R	RNA	EFO	SRS1284348	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASUGC-09A-01R SJTALL001780_D1-TARGET-10-PASUGC-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	38.8	SJTALL001780_D1-TARGET-10-PASUGC-09A-01	SRX1571469		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASUGC-09A-01R SJTALL001780_D1-TARGET-10-PASUGC-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASUGC-09A-01R.fastq	SRR3162247	@dbgap@:reads/SRP011999/SRS1284348/SRX1571469/SRR3162247/SRR3162247.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASUIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASUIN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASUIN-09A-01R	RNA	EFO	SRS1284346	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASUIN-09A-01R SJALL015636_D1-TARGET-10-PASUIN-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	37.5	SJALL015636_D1-TARGET-10-PASUIN-09A-01	SRX1571470		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASUIN-09A-01R SJALL015636_D1-TARGET-10-PASUIN-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASUIN-09A-01R.fastq	SRR3162248	@dbgap@:reads/SRP011999/SRS1284346/SRX1571470/SRR3162248/SRR3162248.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASUIN-09A-01R.expression.txt	3			
TARGET-10-PASUIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASUIN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASUIN-09A-01R	RNA	EFO	SRS1284346	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASUIN-09A-01R SJALL015636_D1-TARGET-10-PASUIN-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	37.5	SJALL015636_D1-TARGET-10-PASUIN-09A-01	SRX1571470		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASUIN-09A-01R SJALL015636_D1-TARGET-10-PASUIN-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASUIN-09A-01R.fastq	SRR3162248	@dbgap@:reads/SRP011999/SRS1284346/SRX1571470/SRR3162248/SRR3162248.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASUSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASUSV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASUSV-09A-01R	RNA	EFO	SRS1284345	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASUSV-09A-01R SJALL015637_D1-TARGET-10-PASUSV-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	36.8	SJALL015637_D1-TARGET-10-PASUSV-09A-01	SRX1571471		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASUSV-09A-01R SJALL015637_D1-TARGET-10-PASUSV-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASUSV-09A-01R.fastq	SRR3162249	@dbgap@:reads/SRP011999/SRS1284345/SRX1571471/SRR3162249/SRR3162249.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASUSV-09A-01R.expression.txt	3			
TARGET-10-PASUSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASUSV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASUSV-09A-01R	RNA	EFO	SRS1284345	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASUSV-09A-01R SJALL015637_D1-TARGET-10-PASUSV-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	36.8	SJALL015637_D1-TARGET-10-PASUSV-09A-01	SRX1571471		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASUSV-09A-01R SJALL015637_D1-TARGET-10-PASUSV-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASUSV-09A-01R.fastq	SRR3162249	@dbgap@:reads/SRP011999/SRS1284345/SRX1571471/SRR3162249/SRR3162249.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASVIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASVIN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASVIN-09A-01R	RNA	EFO	SRS1284344	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASVIN-09A-01R SJALL015638_D1-TARGET-10-PASVIN-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	38.6	SJALL015638_D1-TARGET-10-PASVIN-09A-01	SRX1571472		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASVIN-09A-01R SJALL015638_D1-TARGET-10-PASVIN-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASVIN-09A-01R.fastq	SRR3162250	@dbgap@:reads/SRP011999/SRS1284344/SRX1571472/SRR3162250/SRR3162250.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASVIN-09A-01R.expression.txt	3			
TARGET-10-PASVIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASVIN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASVIN-09A-01R	RNA	EFO	SRS1284344	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASVIN-09A-01R SJALL015638_D1-TARGET-10-PASVIN-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	38.6	SJALL015638_D1-TARGET-10-PASVIN-09A-01	SRX1571472		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASVIN-09A-01R SJALL015638_D1-TARGET-10-PASVIN-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASVIN-09A-01R.fastq	SRR3162250	@dbgap@:reads/SRP011999/SRS1284344/SRX1571472/SRR3162250/SRR3162250.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASVPZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASVPZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASVPZ-09A-01R	RNA	EFO	SRS1284342	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASVPZ-09A-01R SJTALL002035_D1-TARGET-10-PASVPZ-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	36.3	SJTALL002035_D1-TARGET-10-PASVPZ-09A-01	SRX1571473		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASVPZ-09A-01R SJTALL002035_D1-TARGET-10-PASVPZ-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASVPZ-09A-01R.fastq	SRR3162251	@dbgap@:reads/SRP011999/SRS1284342/SRX1571473/SRR3162251/SRR3162251.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASVPZ-09A-01R.expression.txt	3			
TARGET-10-PASVPZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASVPZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASVPZ-09A-01R	RNA	EFO	SRS1284342	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASVPZ-09A-01R SJTALL002035_D1-TARGET-10-PASVPZ-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	36.3	SJTALL002035_D1-TARGET-10-PASVPZ-09A-01	SRX1571473		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASVPZ-09A-01R SJTALL002035_D1-TARGET-10-PASVPZ-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASVPZ-09A-01R.fastq	SRR3162251	@dbgap@:reads/SRP011999/SRS1284342/SRX1571473/SRR3162251/SRR3162251.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASWFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASWFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASWFN-09A-01R	RNA	EFO	SRS1284343	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASWFN-09A-01R SJTALL002039_D1-TARGET-10-PASWFN-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	40.8	SJTALL002039_D1-TARGET-10-PASWFN-09A-01	SRX1571474		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASWFN-09A-01R SJTALL002039_D1-TARGET-10-PASWFN-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASWFN-09A-01R.fastq	SRR3162252	@dbgap@:reads/SRP011999/SRS1284343/SRX1571474/SRR3162252/SRR3162252.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASWFN-09A-01R.expression.txt	3			
TARGET-10-PASWFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASWFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASWFN-09A-01R	RNA	EFO	SRS1284343	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASWFN-09A-01R SJTALL002039_D1-TARGET-10-PASWFN-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	40.8	SJTALL002039_D1-TARGET-10-PASWFN-09A-01	SRX1571474		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASWFN-09A-01R SJTALL002039_D1-TARGET-10-PASWFN-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASWFN-09A-01R.fastq	SRR3162252	@dbgap@:reads/SRP011999/SRS1284343/SRX1571474/SRR3162252/SRR3162252.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASWNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASWNU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASWNU-09A-01R	RNA	EFO	SRS1284341	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASWNU-09A-01R SJALL016436_D1-TARGET-10-PASWNU-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	38.7	SJALL016436_D1-TARGET-10-PASWNU-09A-01	SRX1571475		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASWNU-09A-01R SJALL016436_D1-TARGET-10-PASWNU-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASWNU-09A-01R.fastq	SRR3162253	@dbgap@:reads/SRP011999/SRS1284341/SRX1571475/SRR3162253/SRR3162253.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASWNU-09A-01R.expression.txt	3			
TARGET-10-PASWNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASWNU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASWNU-09A-01R	RNA	EFO	SRS1284341	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASWNU-09A-01R SJALL016436_D1-TARGET-10-PASWNU-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	38.7	SJALL016436_D1-TARGET-10-PASWNU-09A-01	SRX1571475		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASWNU-09A-01R SJALL016436_D1-TARGET-10-PASWNU-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASWNU-09A-01R.fastq	SRR3162253	@dbgap@:reads/SRP011999/SRS1284341/SRX1571475/SRR3162253/SRR3162253.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASWSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASWSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASWSR-09A-01R	RNA	EFO	SRS1284340	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASWSR-09A-01R SJTALL022107_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	38.7	SJTALL022107_D2_RNASEQ_1	SRX1571476		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASWSR-09A-01R SJTALL022107_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASWSR-09A-01R.fastq	SRR3162254	@dbgap@:reads/SRP011999/SRS1284340/SRX1571476/SRR3162254/SRR3162254.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASWSR-09A-01R.expression.txt	3			
TARGET-10-PASWSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASWSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASWSR-09A-01R	RNA	EFO	SRS1284340	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASWSR-09A-01R SJTALL022107_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	38.7	SJTALL022107_D2_RNASEQ_1	SRX1571476		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASWSR-09A-01R SJTALL022107_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASWSR-09A-01R.fastq	SRR3162254	@dbgap@:reads/SRP011999/SRS1284340/SRX1571476/SRR3162254/SRR3162254.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASWXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASWXB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASWXB-09A-01R	RNA	EFO	SRS1284339	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASWXB-09A-01R SJALL015639_D1-TARGET-10-PASWXB-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	36.8	SJALL015639_D1-TARGET-10-PASWXB-09A-01	SRX1571477		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASWXB-09A-01R SJALL015639_D1-TARGET-10-PASWXB-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASWXB-09A-01R.fastq	SRR3162255	@dbgap@:reads/SRP011999/SRS1284339/SRX1571477/SRR3162255/SRR3162255.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASWXB-09A-01R.expression.txt	3			
TARGET-10-PASWXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASWXB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASWXB-09A-01R	RNA	EFO	SRS1284339	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASWXB-09A-01R SJALL015639_D1-TARGET-10-PASWXB-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	36.8	SJALL015639_D1-TARGET-10-PASWXB-09A-01	SRX1571477		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASWXB-09A-01R SJALL015639_D1-TARGET-10-PASWXB-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASWXB-09A-01R.fastq	SRR3162255	@dbgap@:reads/SRP011999/SRS1284339/SRX1571477/SRR3162255/SRR3162255.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASWXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASWXZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASWXZ-09A-01R	RNA	EFO	SRS1284338	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASWXZ-09A-01R SJTALL001636_D1-TARGET-10-PASWXZ-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	38.9	SJTALL001636_D1-TARGET-10-PASWXZ-09A-01	SRX1571478		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASWXZ-09A-01R SJTALL001636_D1-TARGET-10-PASWXZ-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASWXZ-09A-01R.fastq	SRR3162256	@dbgap@:reads/SRP011999/SRS1284338/SRX1571478/SRR3162256/SRR3162256.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASWXZ-09A-01R.expression.txt	3			
TARGET-10-PASWXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASWXZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASWXZ-09A-01R	RNA	EFO	SRS1284338	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASWXZ-09A-01R SJTALL001636_D1-TARGET-10-PASWXZ-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	38.9	SJTALL001636_D1-TARGET-10-PASWXZ-09A-01	SRX1571478		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASWXZ-09A-01R SJTALL001636_D1-TARGET-10-PASWXZ-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASWXZ-09A-01R.fastq	SRR3162256	@dbgap@:reads/SRP011999/SRS1284338/SRX1571478/SRR3162256/SRR3162256.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASWZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASWZJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASWZJ-09A-01R	RNA	EFO	SRS1284337	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASWZJ-09A-01R SJALL015640_D1-TARGET-10-PASWZJ-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	38.5	SJALL015640_D1-TARGET-10-PASWZJ-09A-01	SRX1571479		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASWZJ-09A-01R SJALL015640_D1-TARGET-10-PASWZJ-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASWZJ-09A-01R.fastq	SRR3162257	@dbgap@:reads/SRP011999/SRS1284337/SRX1571479/SRR3162257/SRR3162257.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASWZJ-09A-01R.expression.txt	3			
TARGET-10-PASWZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASWZJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASWZJ-09A-01R	RNA	EFO	SRS1284337	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASWZJ-09A-01R SJALL015640_D1-TARGET-10-PASWZJ-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	38.5	SJALL015640_D1-TARGET-10-PASWZJ-09A-01	SRX1571479		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASWZJ-09A-01R SJALL015640_D1-TARGET-10-PASWZJ-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASWZJ-09A-01R.fastq	SRR3162257	@dbgap@:reads/SRP011999/SRS1284337/SRX1571479/SRR3162257/SRR3162257.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASXIL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXIL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASXIL-09A-01R	RNA	EFO	SRS1284336	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASXIL-09A-01R SJTALL002051_D1-TARGET-10-PASXIL-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	38.1	SJTALL002051_D1-TARGET-10-PASXIL-09A-01	SRX1571480		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASXIL-09A-01R SJTALL002051_D1-TARGET-10-PASXIL-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASXIL-09A-01R.fastq	SRR3162258	@dbgap@:reads/SRP011999/SRS1284336/SRX1571480/SRR3162258/SRR3162258.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASXIL-09A-01R.expression.txt	3			
TARGET-10-PASXIL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXIL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASXIL-09A-01R	RNA	EFO	SRS1284336	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASXIL-09A-01R SJTALL002051_D1-TARGET-10-PASXIL-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	38.1	SJTALL002051_D1-TARGET-10-PASXIL-09A-01	SRX1571480		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASXIL-09A-01R SJTALL002051_D1-TARGET-10-PASXIL-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASXIL-09A-01R.fastq	SRR3162258	@dbgap@:reads/SRP011999/SRS1284336/SRX1571480/SRR3162258/SRR3162258.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASXLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASXLT-09A-01R	RNA	EFO	SRS1284335	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASXLT-09A-01R SJALL015641_D1-TARGET-10-PASXLT-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	37.8	SJALL015641_D1-TARGET-10-PASXLT-09A-01	SRX1571481		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASXLT-09A-01R SJALL015641_D1-TARGET-10-PASXLT-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASXLT-09A-01R.fastq	SRR3162259	@dbgap@:reads/SRP011999/SRS1284335/SRX1571481/SRR3162259/SRR3162259.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASXLT-09A-01R.expression.txt	3			
TARGET-10-PASXLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASXLT-09A-01R	RNA	EFO	SRS1284335	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASXLT-09A-01R SJALL015641_D1-TARGET-10-PASXLT-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	37.8	SJALL015641_D1-TARGET-10-PASXLT-09A-01	SRX1571481		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASXLT-09A-01R SJALL015641_D1-TARGET-10-PASXLT-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASXLT-09A-01R.fastq	SRR3162259	@dbgap@:reads/SRP011999/SRS1284335/SRX1571481/SRR3162259/SRR3162259.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASXLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXLZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASXLZ-09A-01R	RNA	EFO	SRS1284334	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASXLZ-09A-01R SJTALL001639_D1-TARGET-10-PASXLZ-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	37.7	SJTALL001639_D1-TARGET-10-PASXLZ-09A-01	SRX1571482		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASXLZ-09A-01R SJTALL001639_D1-TARGET-10-PASXLZ-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASXLZ-09A-01R.fastq	SRR3162260	@dbgap@:reads/SRP011999/SRS1284334/SRX1571482/SRR3162260/SRR3162260.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASXLZ-09A-01R.expression.txt	3			
TARGET-10-PASXLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXLZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASXLZ-09A-01R	RNA	EFO	SRS1284334	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASXLZ-09A-01R SJTALL001639_D1-TARGET-10-PASXLZ-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	37.7	SJTALL001639_D1-TARGET-10-PASXLZ-09A-01	SRX1571482		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASXLZ-09A-01R SJTALL001639_D1-TARGET-10-PASXLZ-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASXLZ-09A-01R.fastq	SRR3162260	@dbgap@:reads/SRP011999/SRS1284334/SRX1571482/SRR3162260/SRR3162260.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASXMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXMF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASXMF-09A-01R	RNA	EFO	SRS1284333	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASXMF-09A-01R SJTALL002055_D1-TARGET-10-PASXMF-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	38.8	SJTALL002055_D1-TARGET-10-PASXMF-09A-01D	SRX1571483		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASXMF-09A-01R SJTALL002055_D1-TARGET-10-PASXMF-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASXMF-09A-01R.fastq	SRR3162261	@dbgap@:reads/SRP011999/SRS1284333/SRX1571483/SRR3162261/SRR3162261.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASXMF-09A-01R.expression.txt	3			
TARGET-10-PASXMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXMF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASXMF-09A-01R	RNA	EFO	SRS1284333	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASXMF-09A-01R SJTALL002055_D1-TARGET-10-PASXMF-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	38.8	SJTALL002055_D1-TARGET-10-PASXMF-09A-01D	SRX1571483		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASXMF-09A-01R SJTALL002055_D1-TARGET-10-PASXMF-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASXMF-09A-01R.fastq	SRR3162261	@dbgap@:reads/SRP011999/SRS1284333/SRX1571483/SRR3162261/SRR3162261.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASXSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASXSI-09A-01R	RNA	EFO	SRS1284332	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASXSI-09A-01R SJALL015642_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	38.7	SJALL015642_D1_RNASEQ_1	SRX1571484		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASXSI-09A-01R SJALL015642_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASXSI-09A-01R.fastq	SRR3162262	@dbgap@:reads/SRP011999/SRS1284332/SRX1571484/SRR3162262/SRR3162262.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASXSI-09A-01R.expression.txt	3			
TARGET-10-PASXSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASXSI-09A-01R	RNA	EFO	SRS1284332	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASXSI-09A-01R SJALL015642_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	38.7	SJALL015642_D1_RNASEQ_1	SRX1571484		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASXSI-09A-01R SJALL015642_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASXSI-09A-01R.fastq	SRR3162262	@dbgap@:reads/SRP011999/SRS1284332/SRX1571484/SRR3162262/SRR3162262.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASXUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXUC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASXUC-09A-01R	RNA	EFO	SRS1284331	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASXUC-09A-01R SJALL015643_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	37.6	SJALL015643_D1_RNASEQ_1	SRX1571485		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASXUC-09A-01R SJALL015643_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASXUC-09A-01R.fastq	SRR3162263	@dbgap@:reads/SRP011999/SRS1284331/SRX1571485/SRR3162263/SRR3162263.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASXUC-09A-01R.expression.txt	3			
TARGET-10-PASXUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXUC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASXUC-09A-01R	RNA	EFO	SRS1284331	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASXUC-09A-01R SJALL015643_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	37.6	SJALL015643_D1_RNASEQ_1	SRX1571485		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASXUC-09A-01R SJALL015643_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASXUC-09A-01R.fastq	SRR3162263	@dbgap@:reads/SRP011999/SRS1284331/SRX1571485/SRR3162263/SRR3162263.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASXUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASXUU-09A-01R	RNA	EFO	SRS1284330	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASXUU-09A-01R SJALL015644_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	158	34.6	SJALL015644_D1_RNASEQ_1	SRX1571486		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASXUU-09A-01R SJALL015644_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASXUU-09A-01R.fastq	SRR3162264	@dbgap@:reads/SRP011999/SRS1284330/SRX1571486/SRR3162264/SRR3162264.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASXUU-09A-01R.expression.txt	3			
TARGET-10-PASXUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASXUU-09A-01R	RNA	EFO	SRS1284330	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASXUU-09A-01R SJALL015644_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	158	34.6	SJALL015644_D1_RNASEQ_1	SRX1571486		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASXUU-09A-01R SJALL015644_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASXUU-09A-01R.fastq	SRR3162264	@dbgap@:reads/SRP011999/SRS1284330/SRX1571486/SRR3162264/SRR3162264.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASYAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASYAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASYAJ-09A-01R	RNA	EFO	SRS1284329	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASYAJ-09A-01R SJALL015645_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	38	SJALL015645_D1_RNASEQ_1	SRX1571487		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASYAJ-09A-01R SJALL015645_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASYAJ-09A-01R.fastq	SRR3162265	@dbgap@:reads/SRP011999/SRS1284329/SRX1571487/SRR3162265/SRR3162265.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASYAJ-09A-01R.expression.txt	3			
TARGET-10-PASYAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASYAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASYAJ-09A-01R	RNA	EFO	SRS1284329	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASYAJ-09A-01R SJALL015645_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	38	SJALL015645_D1_RNASEQ_1	SRX1571487		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASYAJ-09A-01R SJALL015645_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASYAJ-09A-01R.fastq	SRR3162265	@dbgap@:reads/SRP011999/SRS1284329/SRX1571487/SRR3162265/SRR3162265.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASYCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASYCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASYCN-09A-01R	RNA	EFO	SRS1284328	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASYCN-09A-01R SJBALL001653_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	153	29.7	SJBALL001653_D1_RNASEQ_1	SRX1571488		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASYCN-09A-01R SJBALL001653_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASYCN-09A-01R.fastq	SRR3162266	@dbgap@:reads/SRP011999/SRS1284328/SRX1571488/SRR3162266/SRR3162266.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASYCN-09A-01R.expression.txt	3			
TARGET-10-PASYCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASYCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASYCN-09A-01R	RNA	EFO	SRS1284328	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASYCN-09A-01R SJBALL001653_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	153	29.7	SJBALL001653_D1_RNASEQ_1	SRX1571488		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASYCN-09A-01R SJBALL001653_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASYCN-09A-01R.fastq	SRR3162266	@dbgap@:reads/SRP011999/SRS1284328/SRX1571488/SRR3162266/SRR3162266.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASYGM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASYGM-03A-02R	RNA	EFO	SRS602201	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASYGM-03A-02R A33595 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33595	SRX547641	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASYGM-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PASYGM-03A-02R A33595 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2190-1./A33595.fastq	SRR1797085	@dbgap@:reads/SRP011999/SRS602201/SRX547641/SRR1797085/SRR1797085.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_6_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293021	@dbgap@:reads/SRP011999/SRS602201/SRX547641/SRR1293021/SRR1293021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASYGM-03A-02R.exon.quantification.txt	3			
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASYGM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASYGM-03A-02R	RNA	EFO	SRS602201	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASYGM-03A-02R A33595 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33595	SRX547641	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASYGM-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PASYGM-03A-02R A33595 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2190-1./A33595.fastq	SRR1797085	@dbgap@:reads/SRP011999/SRS602201/SRX547641/SRR1797085/SRR1797085.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_6_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293021	@dbgap@:reads/SRP011999/SRS602201/SRX547641/SRR1293021/SRR1293021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASYGM-03A-02R.gene.quantification.txt	3			
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASYGM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASYGM-03A-02R	RNA	EFO	SRS602201	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASYGM-03A-02R A33595 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33595	SRX547641	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASYGM-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PASYGM-03A-02R A33595 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2190-1./A33595.fastq	SRR1797085	@dbgap@:reads/SRP011999/SRS602201/SRX547641/SRR1797085/SRR1797085.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_6_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293021	@dbgap@:reads/SRP011999/SRS602201/SRX547641/SRR1293021/SRR1293021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PASYGM-03A-02R.isoform.quantification.txt	3			
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASYGM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASYGM-03A-02R	RNA	EFO	SRS602201	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASYGM-03A-02R A33595 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33595	SRX547641	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASYGM-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PASYGM-03A-02R A33595 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2190-1./A33595.fastq	SRR1797085	@dbgap@:reads/SRP011999/SRS602201/SRX547641/SRR1797085/SRR1797085.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_6_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293021	@dbgap@:reads/SRP011999/SRS602201/SRX547641/SRR1293021/SRR1293021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASYGM-03A-02R.fusion.vcf	3			
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASYGM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASYGM-03A-02R	RNA	EFO	SRS602201	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASYGM-03A-02R A33595 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33595	SRX547641	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASYGM-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PASYGM-03A-02R A33595 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2190-1./A33595.fastq	SRR1797085	@dbgap@:reads/SRP011999/SRS602201/SRX547641/SRR1797085/SRR1797085.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_6_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293021	@dbgap@:reads/SRP011999/SRS602201/SRX547641/SRR1293021/SRR1293021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PASYGM-03A-02R.indel.vcf	3			
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASYGM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASYGM-03A-02R	RNA	EFO	SRS602201	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASYGM-03A-02R A33595 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33595	SRX547641	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PASYGM-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PASYGM-03A-02R A33595 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2190-1./A33595.fastq	SRR1797085	@dbgap@:reads/SRP011999/SRS602201/SRX547641/SRR1797085/SRR1797085.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_6_ACCGGC_withJunctionsOnGenome_dupsFlagged.bam	SRR1293021	@dbgap@:reads/SRP011999/SRS602201/SRX547641/SRR1293021/SRR1293021.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PASYGM-03A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PASYHN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASYHN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASYHN-09A-01R	RNA	EFO	SRS1284327	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASYHN-09A-01R SJTALL021669_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	38.4	SJTALL021669_D2_RNASEQ_1	SRX1571489		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASYHN-09A-01R SJTALL021669_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASYHN-09A-01R.fastq	SRR3162267	@dbgap@:reads/SRP011999/SRS1284327/SRX1571489/SRR3162267/SRR3162267.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASYHN-09A-01R.expression.txt	3			
TARGET-10-PASYHN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASYHN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASYHN-09A-01R	RNA	EFO	SRS1284327	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASYHN-09A-01R SJTALL021669_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	38.4	SJTALL021669_D2_RNASEQ_1	SRX1571489		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASYHN-09A-01R SJTALL021669_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASYHN-09A-01R.fastq	SRR3162267	@dbgap@:reads/SRP011999/SRS1284327/SRX1571489/SRR3162267/SRR3162267.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASYIS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASYIS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASYIS-09A-01R	RNA	EFO	SRS1284326	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASYIS-09A-01R SJALL015646_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	36	SJALL015646_D1_RNASEQ_1	SRX1571490		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASYIS-09A-01R SJALL015646_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASYIS-09A-01R.fastq	SRR3162177	@dbgap@:reads/SRP011999/SRS1284326/SRX1571490/SRR3162177/SRR3162177.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASYIS-09A-01R.expression.txt	3			
TARGET-10-PASYIS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASYIS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASYIS-09A-01R	RNA	EFO	SRS1284326	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASYIS-09A-01R SJALL015646_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	36	SJALL015646_D1_RNASEQ_1	SRX1571490		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASYIS-09A-01R SJALL015646_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASYIS-09A-01R.fastq	SRR3162177	@dbgap@:reads/SRP011999/SRS1284326/SRX1571490/SRR3162177/SRR3162177.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASYSJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASYSJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASYSJ-09A-01R	RNA	EFO	SRS1284325	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASYSJ-09A-01R SJALL015647_D1-TARGET-10-PASYSJ-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	39.2	SJALL015647_D1-TARGET-10-PASYSJ-09A-01	SRX1571491		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASYSJ-09A-01R SJALL015647_D1-TARGET-10-PASYSJ-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASYSJ-09A-01R.fastq	SRR3162178	@dbgap@:reads/SRP011999/SRS1284325/SRX1571491/SRR3162178/SRR3162178.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASYSJ-09A-01R.expression.txt	3			
TARGET-10-PASYSJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASYSJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASYSJ-09A-01R	RNA	EFO	SRS1284325	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASYSJ-09A-01R SJALL015647_D1-TARGET-10-PASYSJ-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	39.2	SJALL015647_D1-TARGET-10-PASYSJ-09A-01	SRX1571491		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASYSJ-09A-01R SJALL015647_D1-TARGET-10-PASYSJ-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASYSJ-09A-01R.fastq	SRR3162178	@dbgap@:reads/SRP011999/SRS1284325/SRX1571491/SRR3162178/SRR3162178.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASYWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASYWF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASYWF-03A-01R	RNA	EFO	SRS1284324	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASYWF-03A-01R SJALL015648_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	37.6	SJALL015648_D1_RNASEQ_1	SRX1571492		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASYWF-03A-01R SJALL015648_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASYWF-03A-01R.fastq	SRR3162179	@dbgap@:reads/SRP011999/SRS1284324/SRX1571492/SRR3162179/SRR3162179.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASYWF-03A-01R.expression.txt	3			
TARGET-10-PASYWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASYWF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASYWF-03A-01R	RNA	EFO	SRS1284324	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASYWF-03A-01R SJALL015648_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	37.6	SJALL015648_D1_RNASEQ_1	SRX1571492		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASYWF-03A-01R SJALL015648_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASYWF-03A-01R.fastq	SRR3162179	@dbgap@:reads/SRP011999/SRS1284324/SRX1571492/SRR3162179/SRR3162179.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASZEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASZEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASZEW-09A-01R	RNA	EFO	SRS1284323	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASZEW-09A-01R SJALL015649_D1-TARGET-10-PASZEW-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	40.9	SJALL015649_D1-TARGET-10-PASZEW-09A-01	SRX1571493		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASZEW-09A-01R SJALL015649_D1-TARGET-10-PASZEW-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASZEW-09A-01R.fastq	SRR3162180	@dbgap@:reads/SRP011999/SRS1284323/SRX1571493/SRR3162180/SRR3162180.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASZEW-09A-01R.expression.txt	3			
TARGET-10-PASZEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASZEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASZEW-09A-01R	RNA	EFO	SRS1284323	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASZEW-09A-01R SJALL015649_D1-TARGET-10-PASZEW-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	40.9	SJALL015649_D1-TARGET-10-PASZEW-09A-01	SRX1571493		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASZEW-09A-01R SJALL015649_D1-TARGET-10-PASZEW-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASZEW-09A-01R.fastq	SRR3162180	@dbgap@:reads/SRP011999/SRS1284323/SRX1571493/SRR3162180/SRR3162180.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASZIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASZIY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASZIY-09A-01R	RNA	EFO	SRS1284322	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASZIY-09A-01R SJALL015650_D1-TARGET-10-PASZIY-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	38	SJALL015650_D1-TARGET-10-PASZIY-09A-01	SRX1571494		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASZIY-09A-01R SJALL015650_D1-TARGET-10-PASZIY-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASZIY-09A-01R.fastq	SRR3162181	@dbgap@:reads/SRP011999/SRS1284322/SRX1571494/SRR3162181/SRR3162181.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASZIY-09A-01R.expression.txt	3			
TARGET-10-PASZIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASZIY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASZIY-09A-01R	RNA	EFO	SRS1284322	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASZIY-09A-01R SJALL015650_D1-TARGET-10-PASZIY-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	38	SJALL015650_D1-TARGET-10-PASZIY-09A-01	SRX1571494		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASZIY-09A-01R SJALL015650_D1-TARGET-10-PASZIY-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASZIY-09A-01R.fastq	SRR3162181	@dbgap@:reads/SRP011999/SRS1284322/SRX1571494/SRR3162181/SRR3162181.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PASZJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASZJW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASZJW-03A-01R	RNA	EFO	SRS1284321	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASZJW-03A-01R SJTALL021672_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	41.5	SJTALL021672_D2_RNASEQ_1	SRX1571495		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASZJW-03A-01R SJTALL021672_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASZJW-03A-01R.fastq	SRR3162189	@dbgap@:reads/SRP011999/SRS1284321/SRX1571495/SRR3162189/SRR3162189.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PASZJW-03A-01R.expression.txt	3			
TARGET-10-PASZJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASZJW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PASZJW-03A-01R	RNA	EFO	SRS1284321	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PASZJW-03A-01R SJTALL021672_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	41.5	SJTALL021672_D2_RNASEQ_1	SRX1571495		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PASZJW-03A-01R SJTALL021672_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PASZJW-03A-01R.fastq	SRR3162189	@dbgap@:reads/SRP011999/SRS1284321/SRX1571495/SRR3162189/SRR3162189.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATALJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATALJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATALJ-09A-01R	RNA	EFO	SRS1284320	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATALJ-09A-01R SJALL015651_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	39.9	SJALL015651_D1_RNASEQ_1	SRX1571496		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATALJ-09A-01R SJALL015651_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATALJ-09A-01R.fastq	SRR3162190	@dbgap@:reads/SRP011999/SRS1284320/SRX1571496/SRR3162190/SRR3162190.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATALJ-09A-01R.expression.txt	3			
TARGET-10-PATALJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATALJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATALJ-09A-01R	RNA	EFO	SRS1284320	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATALJ-09A-01R SJALL015651_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	39.9	SJALL015651_D1_RNASEQ_1	SRX1571496		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATALJ-09A-01R SJALL015651_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATALJ-09A-01R.fastq	SRR3162190	@dbgap@:reads/SRP011999/SRS1284320/SRX1571496/SRR3162190/SRR3162190.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATAXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATAXS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATAXS-09A-01R	RNA	EFO	SRS1284319	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATAXS-09A-01R SJTALL002075_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	39.5	SJTALL002075_D1_RNASEQ_1	SRX1571497		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATAXS-09A-01R SJTALL002075_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATAXS-09A-01R.fastq	SRR3162191	@dbgap@:reads/SRP011999/SRS1284319/SRX1571497/SRR3162191/SRR3162191.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATAXS-09A-01R.expression.txt	3			
TARGET-10-PATAXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATAXS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATAXS-09A-01R	RNA	EFO	SRS1284319	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATAXS-09A-01R SJTALL002075_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	39.5	SJTALL002075_D1_RNASEQ_1	SRX1571497		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATAXS-09A-01R SJTALL002075_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATAXS-09A-01R.fastq	SRR3162191	@dbgap@:reads/SRP011999/SRS1284319/SRX1571497/SRR3162191/SRR3162191.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATAYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATAYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATAYT-09A-01R	RNA	EFO	SRS1284317	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATAYT-09A-01R SJALL016437_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	159	36.6	SJALL016437_D1_RNASEQ_1	SRX1571498		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATAYT-09A-01R SJALL016437_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATAYT-09A-01R.fastq	SRR3162192	@dbgap@:reads/SRP011999/SRS1284317/SRX1571498/SRR3162192/SRR3162192.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATAYT-09A-01R.expression.txt	3			
TARGET-10-PATAYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATAYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATAYT-09A-01R	RNA	EFO	SRS1284317	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATAYT-09A-01R SJALL016437_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	159	36.6	SJALL016437_D1_RNASEQ_1	SRX1571498		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATAYT-09A-01R SJALL016437_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATAYT-09A-01R.fastq	SRR3162192	@dbgap@:reads/SRP011999/SRS1284317/SRX1571498/SRR3162192/SRR3162192.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATBDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBDJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATBDJ-09A-01R	RNA	EFO	SRS1284318	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATBDJ-09A-01R SJALL015652_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	39.9	SJALL015652_D1_RNASEQ_1	SRX1571499		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATBDJ-09A-01R SJALL015652_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATBDJ-09A-01R.fastq	SRR3162193	@dbgap@:reads/SRP011999/SRS1284318/SRX1571499/SRR3162193/SRR3162193.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATBDJ-09A-01R.expression.txt	3			
TARGET-10-PATBDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBDJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATBDJ-09A-01R	RNA	EFO	SRS1284318	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATBDJ-09A-01R SJALL015652_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	39.9	SJALL015652_D1_RNASEQ_1	SRX1571499		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATBDJ-09A-01R SJALL015652_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATBDJ-09A-01R.fastq	SRR3162193	@dbgap@:reads/SRP011999/SRS1284318/SRX1571499/SRR3162193/SRR3162193.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATBDK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBDK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATBDK-09A-01R	RNA	EFO	SRS1284316	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATBDK-09A-01R SJALL015653_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	38.4	SJALL015653_D1_RNASEQ_1	SRX1571500		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATBDK-09A-01R SJALL015653_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATBDK-09A-01R.fastq	SRR3162194	@dbgap@:reads/SRP011999/SRS1284316/SRX1571500/SRR3162194/SRR3162194.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATBDK-09A-01R.expression.txt	3			
TARGET-10-PATBDK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBDK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATBDK-09A-01R	RNA	EFO	SRS1284316	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATBDK-09A-01R SJALL015653_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	38.4	SJALL015653_D1_RNASEQ_1	SRX1571500		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATBDK-09A-01R SJALL015653_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATBDK-09A-01R.fastq	SRR3162194	@dbgap@:reads/SRP011999/SRS1284316/SRX1571500/SRR3162194/SRR3162194.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATBGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBGC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATBGC-09A-01R	RNA	EFO	SRS1284315	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATBGC-09A-01R SJALL016438_D1-TARGET-10-PATBGC-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	36.9	SJALL016438_D1-TARGET-10-PATBGC-09A-01	SRX1571501		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATBGC-09A-01R SJALL016438_D1-TARGET-10-PATBGC-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATBGC-09A-01R.fastq	SRR3162268	@dbgap@:reads/SRP011999/SRS1284315/SRX1571501/SRR3162268/SRR3162268.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATBGC-09A-01R.expression.txt	3			
TARGET-10-PATBGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBGC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATBGC-09A-01R	RNA	EFO	SRS1284315	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATBGC-09A-01R SJALL016438_D1-TARGET-10-PATBGC-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	36.9	SJALL016438_D1-TARGET-10-PATBGC-09A-01	SRX1571501		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATBGC-09A-01R SJALL016438_D1-TARGET-10-PATBGC-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATBGC-09A-01R.fastq	SRR3162268	@dbgap@:reads/SRP011999/SRS1284315/SRX1571501/SRR3162268/SRR3162268.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATBNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBNT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATBNT-09A-01R	RNA	EFO	SRS1284314	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATBNT-09A-01R SJALL016439_D1-TARGET-10-PATBNT-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	39.2	SJALL016439_D1-TARGET-10-PATBNT-09A-01	SRX1571502		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATBNT-09A-01R SJALL016439_D1-TARGET-10-PATBNT-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATBNT-09A-01R.fastq	SRR3162269	@dbgap@:reads/SRP011999/SRS1284314/SRX1571502/SRR3162269/SRR3162269.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATBNT-09A-01R.expression.txt	3			
TARGET-10-PATBNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBNT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATBNT-09A-01R	RNA	EFO	SRS1284314	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATBNT-09A-01R SJALL016439_D1-TARGET-10-PATBNT-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	39.2	SJALL016439_D1-TARGET-10-PATBNT-09A-01	SRX1571502		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATBNT-09A-01R SJALL016439_D1-TARGET-10-PATBNT-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATBNT-09A-01R.fastq	SRR3162269	@dbgap@:reads/SRP011999/SRS1284314/SRX1571502/SRR3162269/SRR3162269.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATBRV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBRV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATBRV-09A-01R	RNA	EFO	SRS1284312	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATBRV-09A-01R SJALL016440_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	173	40.9	SJALL016440_D1_RNASEQ_1	SRX1571503		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATBRV-09A-01R SJALL016440_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATBRV-09A-01R.fastq	SRR3162270	@dbgap@:reads/SRP011999/SRS1284312/SRX1571503/SRR3162270/SRR3162270.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATBRV-09A-01R.expression.txt	3			
TARGET-10-PATBRV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBRV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATBRV-09A-01R	RNA	EFO	SRS1284312	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATBRV-09A-01R SJALL016440_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	173	40.9	SJALL016440_D1_RNASEQ_1	SRX1571503		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATBRV-09A-01R SJALL016440_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATBRV-09A-01R.fastq	SRR3162270	@dbgap@:reads/SRP011999/SRS1284312/SRX1571503/SRR3162270/SRR3162270.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATBTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBTX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATBTX-09A-01R	RNA	EFO	SRS1284313	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATBTX-09A-01R SJALL016441_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	171	40.6	SJALL016441_D1_RNASEQ_1	SRX1571504		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATBTX-09A-01R SJALL016441_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATBTX-09A-01R.fastq	SRR3162271	@dbgap@:reads/SRP011999/SRS1284313/SRX1571504/SRR3162271/SRR3162271.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATBTX-09A-01R.expression.txt	3			
TARGET-10-PATBTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBTX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATBTX-09A-01R	RNA	EFO	SRS1284313	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATBTX-09A-01R SJALL016441_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	171	40.6	SJALL016441_D1_RNASEQ_1	SRX1571504		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATBTX-09A-01R SJALL016441_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATBTX-09A-01R.fastq	SRR3162271	@dbgap@:reads/SRP011999/SRS1284313/SRX1571504/SRR3162271/SRR3162271.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATBYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATBYK-09A-01R	RNA	EFO	SRS1284310	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATBYK-09A-01R SJTALL021674_D2-TARGET-10-PATBYK-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	39.6	SJTALL021674_D2-TARGET-10-PATBYK-09A-01	SRX1571505		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATBYK-09A-01R SJTALL021674_D2-TARGET-10-PATBYK-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATBYK-09A-01R.fastq	SRR3162272	@dbgap@:reads/SRP011999/SRS1284310/SRX1571505/SRR3162272/SRR3162272.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATBYK-09A-01R.expression.txt	3			
TARGET-10-PATBYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATBYK-09A-01R	RNA	EFO	SRS1284310	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATBYK-09A-01R SJTALL021674_D2-TARGET-10-PATBYK-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	39.6	SJTALL021674_D2-TARGET-10-PATBYK-09A-01	SRX1571505		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATBYK-09A-01R SJTALL021674_D2-TARGET-10-PATBYK-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATBYK-09A-01R.fastq	SRR3162272	@dbgap@:reads/SRP011999/SRS1284310/SRX1571505/SRR3162272/SRR3162272.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATCDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATCDM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATCDM-09A-01R	RNA	EFO	SRS1284309	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATCDM-09A-01R SJALL015989_D1-TARGET-10-PATCDM-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	36.9	SJALL015989_D1-TARGET-10-PATCDM-09A-01	SRX1571506		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATCDM-09A-01R SJALL015989_D1-TARGET-10-PATCDM-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATCDM-09A-01R.fastq	SRR3162273	@dbgap@:reads/SRP011999/SRS1284309/SRX1571506/SRR3162273/SRR3162273.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATCDM-09A-01R.expression.txt	3			
TARGET-10-PATCDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATCDM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATCDM-09A-01R	RNA	EFO	SRS1284309	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATCDM-09A-01R SJALL015989_D1-TARGET-10-PATCDM-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	36.9	SJALL015989_D1-TARGET-10-PATCDM-09A-01	SRX1571506		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATCDM-09A-01R SJALL015989_D1-TARGET-10-PATCDM-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATCDM-09A-01R.fastq	SRR3162273	@dbgap@:reads/SRP011999/SRS1284309/SRX1571506/SRR3162273/SRR3162273.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATCDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATCDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATCDZ-09A-01R	RNA	EFO	SRS1284311	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATCDZ-09A-01R SJALL015990_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	40.8	SJALL015990_D1_RNASEQ_1	SRX1571507		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATCDZ-09A-01R SJALL015990_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATCDZ-09A-01R.fastq	SRR3162274	@dbgap@:reads/SRP011999/SRS1284311/SRX1571507/SRR3162274/SRR3162274.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATCDZ-09A-01R.expression.txt	3			
TARGET-10-PATCDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATCDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATCDZ-09A-01R	RNA	EFO	SRS1284311	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATCDZ-09A-01R SJALL015990_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	40.8	SJALL015990_D1_RNASEQ_1	SRX1571507		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATCDZ-09A-01R SJALL015990_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATCDZ-09A-01R.fastq	SRR3162274	@dbgap@:reads/SRP011999/SRS1284311/SRX1571507/SRR3162274/SRR3162274.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATCKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATCKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATCKV-09A-01R	RNA	EFO	SRS1284308	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATCKV-09A-01R SJTALL022647_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	38	SJTALL022647_D2_RNASEQ_1	SRX1571508		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATCKV-09A-01R SJTALL022647_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATCKV-09A-01R.fastq	SRR3162275	@dbgap@:reads/SRP011999/SRS1284308/SRX1571508/SRR3162275/SRR3162275.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATCKV-09A-01R.expression.txt	3			
TARGET-10-PATCKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATCKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATCKV-09A-01R	RNA	EFO	SRS1284308	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATCKV-09A-01R SJTALL022647_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	38	SJTALL022647_D2_RNASEQ_1	SRX1571508		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATCKV-09A-01R SJTALL022647_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATCKV-09A-01R.fastq	SRR3162275	@dbgap@:reads/SRP011999/SRS1284308/SRX1571508/SRR3162275/SRR3162275.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATCNI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATCNI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATCNI-09A-01R	RNA	EFO	SRS1284307	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATCNI-09A-01R SJALL015991_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	38.5	SJALL015991_D1_RNASEQ_1	SRX1571509		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATCNI-09A-01R SJALL015991_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATCNI-09A-01R.fastq	SRR3162276	@dbgap@:reads/SRP011999/SRS1284307/SRX1571509/SRR3162276/SRR3162276.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATCNI-09A-01R.expression.txt	3			
TARGET-10-PATCNI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATCNI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATCNI-09A-01R	RNA	EFO	SRS1284307	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATCNI-09A-01R SJALL015991_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	38.5	SJALL015991_D1_RNASEQ_1	SRX1571509		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATCNI-09A-01R SJALL015991_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATCNI-09A-01R.fastq	SRR3162276	@dbgap@:reads/SRP011999/SRS1284307/SRX1571509/SRR3162276/SRR3162276.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PATCTI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCTI-04A-01R	RNA	EFO	SRS602114	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCTI-04A-01R A32765 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32765	SRX547610	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PATCTI-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PATCTI-04A-01R A32765 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2297-1..1/A32765.fastq	SRR1797123	@dbgap@:reads/SRP011999/SRS602114/SRX547610/SRR1797123/SRR1797123.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_8_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292957	@dbgap@:reads/SRP011999/SRS602114/SRX547610/SRR1292957/SRR1292957.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PATCTI-04A-01R.exon.quantification.txt	3			
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PATCTI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCTI-04A-01R	RNA	EFO	SRS602114	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCTI-04A-01R A32765 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32765	SRX547610	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PATCTI-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PATCTI-04A-01R A32765 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2297-1..1/A32765.fastq	SRR1797123	@dbgap@:reads/SRP011999/SRS602114/SRX547610/SRR1797123/SRR1797123.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_8_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292957	@dbgap@:reads/SRP011999/SRS602114/SRX547610/SRR1292957/SRR1292957.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PATCTI-04A-01R.gene.quantification.txt	3			
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PATCTI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCTI-04A-01R	RNA	EFO	SRS602114	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCTI-04A-01R A32765 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32765	SRX547610	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PATCTI-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PATCTI-04A-01R A32765 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2297-1..1/A32765.fastq	SRR1797123	@dbgap@:reads/SRP011999/SRS602114/SRX547610/SRR1797123/SRR1797123.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_8_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292957	@dbgap@:reads/SRP011999/SRS602114/SRX547610/SRR1292957/SRR1292957.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PATCTI-04A-01R.isoform.quantification.txt	3			
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PATCTI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCTI-04A-01R	RNA	EFO	SRS602114	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCTI-04A-01R A32765 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32765	SRX547610	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PATCTI-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PATCTI-04A-01R A32765 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2297-1..1/A32765.fastq	SRR1797123	@dbgap@:reads/SRP011999/SRS602114/SRX547610/SRR1797123/SRR1797123.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_8_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292957	@dbgap@:reads/SRP011999/SRS602114/SRX547610/SRR1292957/SRR1292957.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PATCTI-04A-01R.fusion.vcf	3			
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PATCTI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCTI-04A-01R	RNA	EFO	SRS602114	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCTI-04A-01R A32765 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32765	SRX547610	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PATCTI-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PATCTI-04A-01R A32765 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2297-1..1/A32765.fastq	SRR1797123	@dbgap@:reads/SRP011999/SRS602114/SRX547610/SRR1797123/SRR1797123.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_8_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292957	@dbgap@:reads/SRP011999/SRS602114/SRX547610/SRR1292957/SRR1292957.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PATCTI-04A-01R.indel.vcf	3			
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PATCTI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCTI-04A-01R	RNA	EFO	SRS602114	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCTI-04A-01R A32765 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32765	SRX547610	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PATCTI-04A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PATCTI-04A-01R A32765 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2297-1..1/A32765.fastq	SRR1797123	@dbgap@:reads/SRP011999/SRS602114/SRX547610/SRR1797123/SRR1797123.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GEJACXX_8_ATCTAT_withJunctionsOnGenome_dupsFlagged.bam	SRR1292957	@dbgap@:reads/SRP011999/SRS602114/SRX547610/SRR1292957/SRR1292957.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PATCTI-04A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PATCTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCTI-09A-01R	RNA	EFO	SRS602116	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCTI-09A-01R A32766 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32766	SRX547594	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PATCTI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PATCTI-09A-01R A32766 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2289-1./A32766.fastq	SRR1791066	@dbgap@:reads/SRP011999/SRS602116/SRX547594/SRR1791066/SRR1791066.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_8_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292992	@dbgap@:reads/SRP011999/SRS602116/SRX547594/SRR1292992/SRR1292992.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PATCTI-09A-01R.exon.quantification.txt	3			
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PATCTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCTI-09A-01R	RNA	EFO	SRS602116	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCTI-09A-01R A32766 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32766	SRX547594	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PATCTI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PATCTI-09A-01R A32766 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2289-1./A32766.fastq	SRR1791066	@dbgap@:reads/SRP011999/SRS602116/SRX547594/SRR1791066/SRR1791066.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_8_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292992	@dbgap@:reads/SRP011999/SRS602116/SRX547594/SRR1292992/SRR1292992.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PATCTI-09A-01R.gene.quantification.txt	3			
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PATCTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCTI-09A-01R	RNA	EFO	SRS602116	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCTI-09A-01R A32766 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32766	SRX547594	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PATCTI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PATCTI-09A-01R A32766 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2289-1./A32766.fastq	SRR1791066	@dbgap@:reads/SRP011999/SRS602116/SRX547594/SRR1791066/SRR1791066.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_8_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292992	@dbgap@:reads/SRP011999/SRS602116/SRX547594/SRR1292992/SRR1292992.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PATCTI-09A-01R.isoform.quantification.txt	3			
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PATCTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCTI-09A-01R	RNA	EFO	SRS602116	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCTI-09A-01R A32766 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32766	SRX547594	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PATCTI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PATCTI-09A-01R A32766 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2289-1./A32766.fastq	SRR1791066	@dbgap@:reads/SRP011999/SRS602116/SRX547594/SRR1791066/SRR1791066.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_8_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292992	@dbgap@:reads/SRP011999/SRS602116/SRX547594/SRR1292992/SRR1292992.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PATCTI-09A-01R.fusion.vcf	3			
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PATCTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCTI-09A-01R	RNA	EFO	SRS602116	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCTI-09A-01R A32766 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32766	SRX547594	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PATCTI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PATCTI-09A-01R A32766 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2289-1./A32766.fastq	SRR1791066	@dbgap@:reads/SRP011999/SRS602116/SRX547594/SRR1791066/SRR1791066.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_8_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292992	@dbgap@:reads/SRP011999/SRS602116/SRX547594/SRR1292992/SRR1292992.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PATCTI-09A-01R.indel.vcf	3			
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PATCTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCTI-09A-01R	RNA	EFO	SRS602116	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCTI-09A-01R A32766 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A32766	SRX547594	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PATCTI-09A-01R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-29	TARGET-10-PATCTI-09A-01R A32766 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2289-1./A32766.fastq	SRR1791066	@dbgap@:reads/SRP011999/SRS602116/SRX547594/SRR1791066/SRR1791066.sra	1		bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C3GVCACXX_8_CAGGCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1292992	@dbgap@:reads/SRP011999/SRS602116/SRX547594/SRR1292992/SRR1292992.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PATCTI-09A-01R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PATCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATCUK-09A-01R	RNA	EFO	SRS1284306	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATCUK-09A-01R SJALL015654_D1-TARGET-10-PATCUK-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	38.9	SJALL015654_D1-TARGET-10-PATCUK-09A-01	SRX1571510		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATCUK-09A-01R SJALL015654_D1-TARGET-10-PATCUK-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATCUK-09A-01R.fastq	SRR3162277	@dbgap@:reads/SRP011999/SRS1284306/SRX1571510/SRR3162277/SRR3162277.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATCUK-09A-01R.expression.txt	3			
TARGET-10-PATCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATCUK-09A-01R	RNA	EFO	SRS1284306	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATCUK-09A-01R SJALL015654_D1-TARGET-10-PATCUK-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	38.9	SJALL015654_D1-TARGET-10-PATCUK-09A-01	SRX1571510		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATCUK-09A-01R SJALL015654_D1-TARGET-10-PATCUK-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATCUK-09A-01R.fastq	SRR3162277	@dbgap@:reads/SRP011999/SRS1284306/SRX1571510/SRR3162277/SRR3162277.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATCZN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATCZN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATCZN-09A-01R	RNA	EFO	SRS1284305	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATCZN-09A-01R SJTALL022113_D2-TARGET-10-PATCZN-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	159	33.9	SJTALL022113_D2-TARGET-10-PATCZN-09A-01	SRX1571511		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATCZN-09A-01R SJTALL022113_D2-TARGET-10-PATCZN-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATCZN-09A-01R.fastq	SRR3162278	@dbgap@:reads/SRP011999/SRS1284305/SRX1571511/SRR3162278/SRR3162278.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATCZN-09A-01R.expression.txt	3			
TARGET-10-PATCZN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATCZN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATCZN-09A-01R	RNA	EFO	SRS1284305	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATCZN-09A-01R SJTALL022113_D2-TARGET-10-PATCZN-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	159	33.9	SJTALL022113_D2-TARGET-10-PATCZN-09A-01	SRX1571511		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATCZN-09A-01R SJTALL022113_D2-TARGET-10-PATCZN-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATCZN-09A-01R.fastq	SRR3162278	@dbgap@:reads/SRP011999/SRS1284305/SRX1571511/SRR3162278/SRR3162278.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATDBU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDBU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATDBU-09A-01R	RNA	EFO	SRS1284304	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATDBU-09A-01R SJALL015992_D1-TARGET-10-PATDBU-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	36	SJALL015992_D1-TARGET-10-PATDBU-09A-01	SRX1571512		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATDBU-09A-01R SJALL015992_D1-TARGET-10-PATDBU-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATDBU-09A-01R.fastq	SRR3162279	@dbgap@:reads/SRP011999/SRS1284304/SRX1571512/SRR3162279/SRR3162279.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATDBU-09A-01R.expression.txt	3			
TARGET-10-PATDBU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDBU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATDBU-09A-01R	RNA	EFO	SRS1284304	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATDBU-09A-01R SJALL015992_D1-TARGET-10-PATDBU-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	36	SJALL015992_D1-TARGET-10-PATDBU-09A-01	SRX1571512		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATDBU-09A-01R SJALL015992_D1-TARGET-10-PATDBU-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATDBU-09A-01R.fastq	SRR3162279	@dbgap@:reads/SRP011999/SRS1284304/SRX1571512/SRR3162279/SRR3162279.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATDDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATDDZ-09A-01R	RNA	EFO	SRS1284303	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATDDZ-09A-01R SJALL015993_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	37.5	SJALL015993_D1_RNASEQ_1	SRX1571513		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATDDZ-09A-01R SJALL015993_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATDDZ-09A-01R.fastq	SRR3162280	@dbgap@:reads/SRP011999/SRS1284303/SRX1571513/SRR3162280/SRR3162280.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATDDZ-09A-01R.expression.txt	3			
TARGET-10-PATDDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATDDZ-09A-01R	RNA	EFO	SRS1284303	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATDDZ-09A-01R SJALL015993_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	37.5	SJALL015993_D1_RNASEQ_1	SRX1571513		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATDDZ-09A-01R SJALL015993_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATDDZ-09A-01R.fastq	SRR3162280	@dbgap@:reads/SRP011999/SRS1284303/SRX1571513/SRR3162280/SRR3162280.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATDFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATDFE-09A-01R	RNA	EFO	SRS1284302	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATDFE-09A-01R SJALL015994_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	145	28.3	SJALL015994_D1_RNASEQ_1	SRX1571514		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATDFE-09A-01R SJALL015994_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATDFE-09A-01R.fastq	SRR3162281	@dbgap@:reads/SRP011999/SRS1284302/SRX1571514/SRR3162281/SRR3162281.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATDFE-09A-01R.expression.txt	3			
TARGET-10-PATDFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATDFE-09A-01R	RNA	EFO	SRS1284302	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATDFE-09A-01R SJALL015994_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	145	28.3	SJALL015994_D1_RNASEQ_1	SRX1571514		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATDFE-09A-01R SJALL015994_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATDFE-09A-01R.fastq	SRR3162281	@dbgap@:reads/SRP011999/SRS1284302/SRX1571514/SRR3162281/SRR3162281.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATDGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATDGZ-09A-01R	RNA	EFO	SRS1284300	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATDGZ-09A-01R SJALL015655_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	41	SJALL015655_D1_RNASEQ_1	SRX1571515		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATDGZ-09A-01R SJALL015655_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATDGZ-09A-01R.fastq	SRR3162282	@dbgap@:reads/SRP011999/SRS1284300/SRX1571515/SRR3162282/SRR3162282.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATDGZ-09A-01R.expression.txt	3			
TARGET-10-PATDGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATDGZ-09A-01R	RNA	EFO	SRS1284300	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATDGZ-09A-01R SJALL015655_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	41	SJALL015655_D1_RNASEQ_1	SRX1571515		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATDGZ-09A-01R SJALL015655_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATDGZ-09A-01R.fastq	SRR3162282	@dbgap@:reads/SRP011999/SRS1284300/SRX1571515/SRR3162282/SRR3162282.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATDKT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDKT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATDKT-09A-01R	RNA	EFO	SRS1284301	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATDKT-09A-01R SJTALL021675_D2-TARGET-10-PATDKT-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	35.9	SJTALL021675_D2-TARGET-10-PATDKT-09A-01	SRX1571516		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATDKT-09A-01R SJTALL021675_D2-TARGET-10-PATDKT-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATDKT-09A-01R.fastq	SRR3162283	@dbgap@:reads/SRP011999/SRS1284301/SRX1571516/SRR3162283/SRR3162283.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATDKT-09A-01R.expression.txt	3			
TARGET-10-PATDKT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDKT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATDKT-09A-01R	RNA	EFO	SRS1284301	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATDKT-09A-01R SJTALL021675_D2-TARGET-10-PATDKT-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	35.9	SJTALL021675_D2-TARGET-10-PATDKT-09A-01	SRX1571516		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATDKT-09A-01R SJTALL021675_D2-TARGET-10-PATDKT-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATDKT-09A-01R.fastq	SRR3162283	@dbgap@:reads/SRP011999/SRS1284301/SRX1571516/SRR3162283/SRR3162283.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATDLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDLG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATDLG-09A-01R	RNA	EFO	SRS1284299	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATDLG-09A-01R SJBALL001675_D1-TARGET-10-PATDLG-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	37.3	SJBALL001675_D1-TARGET-10-PATDLG-09A-01	SRX1571517		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATDLG-09A-01R SJBALL001675_D1-TARGET-10-PATDLG-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATDLG-09A-01R.fastq	SRR3162284	@dbgap@:reads/SRP011999/SRS1284299/SRX1571517/SRR3162284/SRR3162284.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATDLG-09A-01R.expression.txt	3			
TARGET-10-PATDLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDLG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATDLG-09A-01R	RNA	EFO	SRS1284299	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATDLG-09A-01R SJBALL001675_D1-TARGET-10-PATDLG-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	37.3	SJBALL001675_D1-TARGET-10-PATDLG-09A-01	SRX1571517		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATDLG-09A-01R SJBALL001675_D1-TARGET-10-PATDLG-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATDLG-09A-01R.fastq	SRR3162284	@dbgap@:reads/SRP011999/SRS1284299/SRX1571517/SRR3162284/SRR3162284.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATDMN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDMN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATDMN-09A-01R	RNA	EFO	SRS1284298	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATDMN-09A-01R SJALL015995_D1-TARGET-10-PATDMN-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	33.3	SJALL015995_D1-TARGET-10-PATDMN-09A-01	SRX1571518		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATDMN-09A-01R SJALL015995_D1-TARGET-10-PATDMN-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATDMN-09A-01R.fastq	SRR3162285	@dbgap@:reads/SRP011999/SRS1284298/SRX1571518/SRR3162285/SRR3162285.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATDMN-09A-01R.expression.txt	3			
TARGET-10-PATDMN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDMN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATDMN-09A-01R	RNA	EFO	SRS1284298	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATDMN-09A-01R SJALL015995_D1-TARGET-10-PATDMN-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	33.3	SJALL015995_D1-TARGET-10-PATDMN-09A-01	SRX1571518		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATDMN-09A-01R SJALL015995_D1-TARGET-10-PATDMN-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATDMN-09A-01R.fastq	SRR3162285	@dbgap@:reads/SRP011999/SRS1284298/SRX1571518/SRR3162285/SRR3162285.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATDRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDRC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATDRC-03A-01R	RNA	EFO	SRS1284297	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATDRC-03A-01R SJTALL002091_D1-TARGET-10-PATDRC-03A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	35.5	SJTALL002091_D1-TARGET-10-PATDRC-03A-01D	SRX1571519		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATDRC-03A-01R SJTALL002091_D1-TARGET-10-PATDRC-03A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATDRC-03A-01R.fastq	SRR3162286	@dbgap@:reads/SRP011999/SRS1284297/SRX1571519/SRR3162286/SRR3162286.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATDRC-03A-01R.expression.txt	3			
TARGET-10-PATDRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDRC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATDRC-03A-01R	RNA	EFO	SRS1284297	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATDRC-03A-01R SJTALL002091_D1-TARGET-10-PATDRC-03A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	35.5	SJTALL002091_D1-TARGET-10-PATDRC-03A-01D	SRX1571519		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATDRC-03A-01R SJTALL002091_D1-TARGET-10-PATDRC-03A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATDRC-03A-01R.fastq	SRR3162286	@dbgap@:reads/SRP011999/SRS1284297/SRX1571519/SRR3162286/SRR3162286.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATEAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATEAK-09A-01R	RNA	EFO	SRS1284296	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATEAK-09A-01R SJTALL001677_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	40.3	SJTALL001677_D1_RNASEQ_1	SRX1571520		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATEAK-09A-01R SJTALL001677_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATEAK-09A-01R.fastq	SRR3162287	@dbgap@:reads/SRP011999/SRS1284296/SRX1571520/SRR3162287/SRR3162287.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATEAK-09A-01R.expression.txt	3			
TARGET-10-PATEAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATEAK-09A-01R	RNA	EFO	SRS1284296	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATEAK-09A-01R SJTALL001677_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	40.3	SJTALL001677_D1_RNASEQ_1	SRX1571520		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATEAK-09A-01R SJTALL001677_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATEAK-09A-01R.fastq	SRR3162287	@dbgap@:reads/SRP011999/SRS1284296/SRX1571520/SRR3162287/SRR3162287.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATEFF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEFF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATEFF-09A-01R	RNA	EFO	SRS1284295	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATEFF-09A-01R SJALL015656_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	169	39.9	SJALL015656_D1_RNASEQ_1	SRX1571521		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATEFF-09A-01R SJALL015656_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATEFF-09A-01R.fastq	SRR3162288	@dbgap@:reads/SRP011999/SRS1284295/SRX1571521/SRR3162288/SRR3162288.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATEFF-09A-01R.expression.txt	3			
TARGET-10-PATEFF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEFF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATEFF-09A-01R	RNA	EFO	SRS1284295	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATEFF-09A-01R SJALL015656_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	169	39.9	SJALL015656_D1_RNASEQ_1	SRX1571521		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATEFF-09A-01R SJALL015656_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATEFF-09A-01R.fastq	SRR3162288	@dbgap@:reads/SRP011999/SRS1284295/SRX1571521/SRR3162288/SRR3162288.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATEHZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEHZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATEHZ-03A-01R	RNA	EFO	SRS1284294	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATEHZ-03A-01R SJALL015657_D1-TARGET-10-PATEHZ-03A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	36.1	SJALL015657_D1-TARGET-10-PATEHZ-03A-01	SRX1571522		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATEHZ-03A-01R SJALL015657_D1-TARGET-10-PATEHZ-03A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATEHZ-03A-01R.fastq	SRR3162289	@dbgap@:reads/SRP011999/SRS1284294/SRX1571522/SRR3162289/SRR3162289.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATEHZ-03A-01R.expression.txt	3			
TARGET-10-PATEHZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEHZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATEHZ-03A-01R	RNA	EFO	SRS1284294	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATEHZ-03A-01R SJALL015657_D1-TARGET-10-PATEHZ-03A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	36.1	SJALL015657_D1-TARGET-10-PATEHZ-03A-01	SRX1571522		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATEHZ-03A-01R SJALL015657_D1-TARGET-10-PATEHZ-03A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATEHZ-03A-01R.fastq	SRR3162289	@dbgap@:reads/SRP011999/SRS1284294/SRX1571522/SRR3162289/SRR3162289.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATEIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEIT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATEIT-09A-01R	RNA	EFO	SRS1284293	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATEIT-09A-01R SJALL015658_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	40.5	SJALL015658_D1_RNASEQ_1	SRX1571523		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATEIT-09A-01R SJALL015658_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATEIT-09A-01R.fastq	SRR3162290	@dbgap@:reads/SRP011999/SRS1284293/SRX1571523/SRR3162290/SRR3162290.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATEIT-09A-01R.expression.txt	3			
TARGET-10-PATEIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEIT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATEIT-09A-01R	RNA	EFO	SRS1284293	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATEIT-09A-01R SJALL015658_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	40.5	SJALL015658_D1_RNASEQ_1	SRX1571523		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATEIT-09A-01R SJALL015658_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATEIT-09A-01R.fastq	SRR3162290	@dbgap@:reads/SRP011999/SRS1284293/SRX1571523/SRR3162290/SRR3162290.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATEMI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEMI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATEMI-09A-01R	RNA	EFO	SRS1284292	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATEMI-09A-01R SJTALL021678_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	38.8	SJTALL021678_D2_RNASEQ_1	SRX1571524		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATEMI-09A-01R SJTALL021678_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATEMI-09A-01R.fastq	SRR3162291	@dbgap@:reads/SRP011999/SRS1284292/SRX1571524/SRR3162291/SRR3162291.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATEMI-09A-01R.expression.txt	3			
TARGET-10-PATEMI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEMI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATEMI-09A-01R	RNA	EFO	SRS1284292	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATEMI-09A-01R SJTALL021678_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	38.8	SJTALL021678_D2_RNASEQ_1	SRX1571524		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATEMI-09A-01R SJTALL021678_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATEMI-09A-01R.fastq	SRR3162291	@dbgap@:reads/SRP011999/SRS1284292/SRX1571524/SRR3162291/SRR3162291.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATENL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATENL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATENL-09A-01R	RNA	EFO	SRS1284291	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATENL-09A-01R SJALL015659_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	39	SJALL015659_D1_RNASEQ_1	SRX1571525		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATENL-09A-01R SJALL015659_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATENL-09A-01R.fastq	SRR3162292	@dbgap@:reads/SRP011999/SRS1284291/SRX1571525/SRR3162292/SRR3162292.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATENL-09A-01R.expression.txt	3			
TARGET-10-PATENL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATENL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATENL-09A-01R	RNA	EFO	SRS1284291	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATENL-09A-01R SJALL015659_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	39	SJALL015659_D1_RNASEQ_1	SRX1571525		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATENL-09A-01R SJALL015659_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATENL-09A-01R.fastq	SRR3162292	@dbgap@:reads/SRP011999/SRS1284291/SRX1571525/SRR3162292/SRR3162292.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATEVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATEVL-09A-01R	RNA	EFO	SRS1284290	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATEVL-09A-01R SJALL015996_D1-TARGET-10-PATEVL-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	157	33.3	SJALL015996_D1-TARGET-10-PATEVL-09A-01	SRX1571526		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATEVL-09A-01R SJALL015996_D1-TARGET-10-PATEVL-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATEVL-09A-01R.fastq	SRR3162293	@dbgap@:reads/SRP011999/SRS1284290/SRX1571526/SRR3162293/SRR3162293.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATEVL-09A-01R.expression.txt	3			
TARGET-10-PATEVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATEVL-09A-01R	RNA	EFO	SRS1284290	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATEVL-09A-01R SJALL015996_D1-TARGET-10-PATEVL-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	157	33.3	SJALL015996_D1-TARGET-10-PATEVL-09A-01	SRX1571526		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATEVL-09A-01R SJALL015996_D1-TARGET-10-PATEVL-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATEVL-09A-01R.fastq	SRR3162293	@dbgap@:reads/SRP011999/SRS1284290/SRX1571526/SRR3162293/SRR3162293.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATEYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATEYS-09A-01R	RNA	EFO	SRS1284289	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATEYS-09A-01R SJALL015997_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	37	SJALL015997_D1_RNASEQ_1	SRX1571527		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATEYS-09A-01R SJALL015997_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATEYS-09A-01R.fastq	SRR3162294	@dbgap@:reads/SRP011999/SRS1284289/SRX1571527/SRR3162294/SRR3162294.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATEYS-09A-01R.expression.txt	3			
TARGET-10-PATEYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATEYS-09A-01R	RNA	EFO	SRS1284289	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATEYS-09A-01R SJALL015997_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	37	SJALL015997_D1_RNASEQ_1	SRX1571527		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATEYS-09A-01R SJALL015997_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATEYS-09A-01R.fastq	SRR3162294	@dbgap@:reads/SRP011999/SRS1284289/SRX1571527/SRR3162294/SRR3162294.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATFJD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATFJD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATFJD-09A-01R	RNA	EFO	SRS1284287	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATFJD-09A-01R SJALL016442_D1-TARGET-10-PATFJD-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	156	32.1	SJALL016442_D1-TARGET-10-PATFJD-09A-01	SRX1571528		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATFJD-09A-01R SJALL016442_D1-TARGET-10-PATFJD-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATFJD-09A-01R.fastq	SRR3162295	@dbgap@:reads/SRP011999/SRS1284287/SRX1571528/SRR3162295/SRR3162295.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATFJD-09A-01R.expression.txt	3			
TARGET-10-PATFJD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATFJD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATFJD-09A-01R	RNA	EFO	SRS1284287	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATFJD-09A-01R SJALL016442_D1-TARGET-10-PATFJD-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	156	32.1	SJALL016442_D1-TARGET-10-PATFJD-09A-01	SRX1571528		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATFJD-09A-01R SJALL016442_D1-TARGET-10-PATFJD-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATFJD-09A-01R.fastq	SRR3162295	@dbgap@:reads/SRP011999/SRS1284287/SRX1571528/SRR3162295/SRR3162295.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATFJP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATFJP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATFJP-09A-01R	RNA	EFO	SRS1284288	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATFJP-09A-01R SJALL015998_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	35.6	SJALL015998_D1_RNASEQ_1	SRX1571529		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATFJP-09A-01R SJALL015998_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATFJP-09A-01R.fastq	SRR3162296	@dbgap@:reads/SRP011999/SRS1284288/SRX1571529/SRR3162296/SRR3162296.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATFJP-09A-01R.expression.txt	3			
TARGET-10-PATFJP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATFJP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATFJP-09A-01R	RNA	EFO	SRS1284288	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATFJP-09A-01R SJALL015998_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	35.6	SJALL015998_D1_RNASEQ_1	SRX1571529		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATFJP-09A-01R SJALL015998_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATFJP-09A-01R.fastq	SRR3162296	@dbgap@:reads/SRP011999/SRS1284288/SRX1571529/SRR3162296/SRR3162296.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATFRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATFRM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATFRM-09A-01R	RNA	EFO	SRS1284286	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATFRM-09A-01R SJTALL022442_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	148	28.6	SJTALL022442_D2_RNASEQ_1	SRX1571530		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATFRM-09A-01R SJTALL022442_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATFRM-09A-01R.fastq	SRR3162297	@dbgap@:reads/SRP011999/SRS1284286/SRX1571530/SRR3162297/SRR3162297.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATFRM-09A-01R.expression.txt	3			
TARGET-10-PATFRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATFRM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATFRM-09A-01R	RNA	EFO	SRS1284286	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATFRM-09A-01R SJTALL022442_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	148	28.6	SJTALL022442_D2_RNASEQ_1	SRX1571530		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATFRM-09A-01R SJTALL022442_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATFRM-09A-01R.fastq	SRR3162297	@dbgap@:reads/SRP011999/SRS1284286/SRX1571530/SRR3162297/SRR3162297.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATFVG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATFVG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATFVG-09A-01R	RNA	EFO	SRS1284284	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATFVG-09A-01R SJALL015660_D1-TARGET-10-PATFVG-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	38.7	SJALL015660_D1-TARGET-10-PATFVG-09A-01	SRX1571531		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATFVG-09A-01R SJALL015660_D1-TARGET-10-PATFVG-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATFVG-09A-01R.fastq	SRR3162298	@dbgap@:reads/SRP011999/SRS1284284/SRX1571531/SRR3162298/SRR3162298.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATFVG-09A-01R.expression.txt	3			
TARGET-10-PATFVG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATFVG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATFVG-09A-01R	RNA	EFO	SRS1284284	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATFVG-09A-01R SJALL015660_D1-TARGET-10-PATFVG-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	38.7	SJALL015660_D1-TARGET-10-PATFVG-09A-01	SRX1571531		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATFVG-09A-01R SJALL015660_D1-TARGET-10-PATFVG-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATFVG-09A-01R.fastq	SRR3162298	@dbgap@:reads/SRP011999/SRS1284284/SRX1571531/SRR3162298/SRR3162298.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATFWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATFWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATFWF-09A-01R	RNA	EFO	SRS1284285	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATFWF-09A-01R SJTALL021682_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	169	40.2	SJTALL021682_D2_RNASEQ_1	SRX1571532		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATFWF-09A-01R SJTALL021682_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATFWF-09A-01R.fastq	SRR3162299	@dbgap@:reads/SRP011999/SRS1284285/SRX1571532/SRR3162299/SRR3162299.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATFWF-09A-01R.expression.txt	3			
TARGET-10-PATFWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATFWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATFWF-09A-01R	RNA	EFO	SRS1284285	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATFWF-09A-01R SJTALL021682_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	169	40.2	SJTALL021682_D2_RNASEQ_1	SRX1571532		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATFWF-09A-01R SJTALL021682_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATFWF-09A-01R.fastq	SRR3162299	@dbgap@:reads/SRP011999/SRS1284285/SRX1571532/SRR3162299/SRR3162299.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATFYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATFYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATFYZ-09A-01R	RNA	EFO	SRS1284282	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATFYZ-09A-01R SJTALL022658_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	39.3	SJTALL022658_D2_RNASEQ_1	SRX1571533		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATFYZ-09A-01R SJTALL022658_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATFYZ-09A-01R.fastq	SRR3162300	@dbgap@:reads/SRP011999/SRS1284282/SRX1571533/SRR3162300/SRR3162300.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATFYZ-09A-01R.expression.txt	3			
TARGET-10-PATFYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATFYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATFYZ-09A-01R	RNA	EFO	SRS1284282	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATFYZ-09A-01R SJTALL022658_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	39.3	SJTALL022658_D2_RNASEQ_1	SRX1571533		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATFYZ-09A-01R SJTALL022658_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATFYZ-09A-01R.fastq	SRR3162300	@dbgap@:reads/SRP011999/SRS1284282/SRX1571533/SRR3162300/SRR3162300.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATGBY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGBY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATGBY-09A-01R	RNA	EFO	SRS1284283	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATGBY-09A-01R SJTALL021684_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	40.2	SJTALL021684_D2_RNASEQ_1	SRX1571534		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATGBY-09A-01R SJTALL021684_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATGBY-09A-01R.fastq	SRR3162301	@dbgap@:reads/SRP011999/SRS1284283/SRX1571534/SRR3162301/SRR3162301.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATGBY-09A-01R.expression.txt	3			
TARGET-10-PATGBY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGBY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATGBY-09A-01R	RNA	EFO	SRS1284283	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATGBY-09A-01R SJTALL021684_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	40.2	SJTALL021684_D2_RNASEQ_1	SRX1571534		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATGBY-09A-01R SJTALL021684_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATGBY-09A-01R.fastq	SRR3162301	@dbgap@:reads/SRP011999/SRS1284283/SRX1571534/SRR3162301/SRR3162301.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATGKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATGKE-09A-01R	RNA	EFO	SRS1284281	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATGKE-09A-01R SJALL015661_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	176	41.9	SJALL015661_D1_RNASEQ_1	SRX1571535		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATGKE-09A-01R SJALL015661_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATGKE-09A-01R.fastq	SRR3162302	@dbgap@:reads/SRP011999/SRS1284281/SRX1571535/SRR3162302/SRR3162302.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATGKE-09A-01R.expression.txt	3			
TARGET-10-PATGKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATGKE-09A-01R	RNA	EFO	SRS1284281	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATGKE-09A-01R SJALL015661_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	176	41.9	SJALL015661_D1_RNASEQ_1	SRX1571535		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATGKE-09A-01R SJALL015661_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATGKE-09A-01R.fastq	SRR3162302	@dbgap@:reads/SRP011999/SRS1284281/SRX1571535/SRR3162302/SRR3162302.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATGLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGLV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATGLV-09A-01R	RNA	EFO	SRS1284280	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATGLV-09A-01R SJALL015999_D1-TARGET-10-PATGLV-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	36.5	SJALL015999_D1-TARGET-10-PATGLV-09A-01	SRX1571536		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATGLV-09A-01R SJALL015999_D1-TARGET-10-PATGLV-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATGLV-09A-01R.fastq	SRR3162303	@dbgap@:reads/SRP011999/SRS1284280/SRX1571536/SRR3162303/SRR3162303.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATGLV-09A-01R.expression.txt	3			
TARGET-10-PATGLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGLV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATGLV-09A-01R	RNA	EFO	SRS1284280	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATGLV-09A-01R SJALL015999_D1-TARGET-10-PATGLV-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	36.5	SJALL015999_D1-TARGET-10-PATGLV-09A-01	SRX1571536		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATGLV-09A-01R SJALL015999_D1-TARGET-10-PATGLV-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATGLV-09A-01R.fastq	SRR3162303	@dbgap@:reads/SRP011999/SRS1284280/SRX1571536/SRR3162303/SRR3162303.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATGMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATGMP-09A-01R	RNA	EFO	SRS1284279	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATGMP-09A-01R SJALL016000_D1-TARGET-10-PATGMP-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	36	SJALL016000_D1-TARGET-10-PATGMP-09A-01	SRX1571537		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATGMP-09A-01R SJALL016000_D1-TARGET-10-PATGMP-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATGMP-09A-01R.fastq	SRR3162304	@dbgap@:reads/SRP011999/SRS1284279/SRX1571537/SRR3162304/SRR3162304.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATGMP-09A-01R.expression.txt	3			
TARGET-10-PATGMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATGMP-09A-01R	RNA	EFO	SRS1284279	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATGMP-09A-01R SJALL016000_D1-TARGET-10-PATGMP-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	36	SJALL016000_D1-TARGET-10-PATGMP-09A-01	SRX1571537		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATGMP-09A-01R SJALL016000_D1-TARGET-10-PATGMP-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATGMP-09A-01R.fastq	SRR3162304	@dbgap@:reads/SRP011999/SRS1284279/SRX1571537/SRR3162304/SRR3162304.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATGVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGVX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATGVX-09A-01R	RNA	EFO	SRS1284278	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATGVX-09A-01R SJALL016001_D1-TARGET-10-PATGVX-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	159	33.3	SJALL016001_D1-TARGET-10-PATGVX-09A-01	SRX1571538		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATGVX-09A-01R SJALL016001_D1-TARGET-10-PATGVX-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATGVX-09A-01R.fastq	SRR3162305	@dbgap@:reads/SRP011999/SRS1284278/SRX1571538/SRR3162305/SRR3162305.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATGVX-09A-01R.expression.txt	3			
TARGET-10-PATGVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGVX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATGVX-09A-01R	RNA	EFO	SRS1284278	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATGVX-09A-01R SJALL016001_D1-TARGET-10-PATGVX-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	159	33.3	SJALL016001_D1-TARGET-10-PATGVX-09A-01	SRX1571538		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATGVX-09A-01R SJALL016001_D1-TARGET-10-PATGVX-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATGVX-09A-01R.fastq	SRR3162305	@dbgap@:reads/SRP011999/SRS1284278/SRX1571538/SRR3162305/SRR3162305.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATGWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGWP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATGWP-09A-01R	RNA	EFO	SRS1284277	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATGWP-09A-01R SJALL016002_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	38.4	SJALL016002_D1_RNASEQ_1	SRX1571539		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATGWP-09A-01R SJALL016002_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATGWP-09A-01R.fastq	SRR3162306	@dbgap@:reads/SRP011999/SRS1284277/SRX1571539/SRR3162306/SRR3162306.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATGWP-09A-01R.expression.txt	3			
TARGET-10-PATGWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGWP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATGWP-09A-01R	RNA	EFO	SRS1284277	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATGWP-09A-01R SJALL016002_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	38.4	SJALL016002_D1_RNASEQ_1	SRX1571539		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATGWP-09A-01R SJALL016002_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATGWP-09A-01R.fastq	SRR3162306	@dbgap@:reads/SRP011999/SRS1284277/SRX1571539/SRR3162306/SRR3162306.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATGYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATGYH-09A-01R	RNA	EFO	SRS1284275	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATGYH-09A-01R SJTALL021685_D2-TARGET-10-PATGYH-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	35.9	SJTALL021685_D2-TARGET-10-PATGYH-09A-01	SRX1571541		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATGYH-09A-01R SJTALL021685_D2-TARGET-10-PATGYH-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATGYH-09A-01R.fastq	SRR3162308	@dbgap@:reads/SRP011999/SRS1284275/SRX1571541/SRR3162308/SRR3162308.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATGYH-09A-01R.expression.txt	3			
TARGET-10-PATGYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATGYH-09A-01R	RNA	EFO	SRS1284275	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATGYH-09A-01R SJTALL021685_D2-TARGET-10-PATGYH-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	35.9	SJTALL021685_D2-TARGET-10-PATGYH-09A-01	SRX1571541		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATGYH-09A-01R SJTALL021685_D2-TARGET-10-PATGYH-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATGYH-09A-01R.fastq	SRR3162308	@dbgap@:reads/SRP011999/SRS1284275/SRX1571541/SRR3162308/SRR3162308.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATGZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGZA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATGZA-09A-01R	RNA	EFO	SRS1284274	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATGZA-09A-01R SJALL016443_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	178	44	SJALL016443_D1_RNASEQ_1	SRX1571542		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATGZA-09A-01R SJALL016443_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATGZA-09A-01R.fastq	SRR3162309	@dbgap@:reads/SRP011999/SRS1284274/SRX1571542/SRR3162309/SRR3162309.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATGZA-09A-01R.expression.txt	3			
TARGET-10-PATGZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGZA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATGZA-09A-01R	RNA	EFO	SRS1284274	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATGZA-09A-01R SJALL016443_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	178	44	SJALL016443_D1_RNASEQ_1	SRX1571542		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATGZA-09A-01R SJALL016443_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATGZA-09A-01R.fastq	SRR3162309	@dbgap@:reads/SRP011999/SRS1284274/SRX1571542/SRR3162309/SRR3162309.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATHBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATHBG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATHBG-09A-01R	RNA	EFO	SRS1284273	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATHBG-09A-01R SJTALL012398_D1-TARGET-10-PATHBG-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	35.4	SJTALL012398_D1-TARGET-10-PATHBG-09A-01	SRX1571543		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATHBG-09A-01R SJTALL012398_D1-TARGET-10-PATHBG-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATHBG-09A-01R.fastq	SRR3162310	@dbgap@:reads/SRP011999/SRS1284273/SRX1571543/SRR3162310/SRR3162310.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATHBG-09A-01R.expression.txt	3			
TARGET-10-PATHBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATHBG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATHBG-09A-01R	RNA	EFO	SRS1284273	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATHBG-09A-01R SJTALL012398_D1-TARGET-10-PATHBG-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	35.4	SJTALL012398_D1-TARGET-10-PATHBG-09A-01	SRX1571543		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATHBG-09A-01R SJTALL012398_D1-TARGET-10-PATHBG-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATHBG-09A-01R.fastq	SRR3162310	@dbgap@:reads/SRP011999/SRS1284273/SRX1571543/SRR3162310/SRR3162310.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATHFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATHFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATHFE-09A-01R	RNA	EFO	SRS1284271	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATHFE-09A-01R SJALL016003_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	39.6	SJALL016003_D1_RNASEQ_1	SRX1571544		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATHFE-09A-01R SJALL016003_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATHFE-09A-01R.fastq	SRR3162311	@dbgap@:reads/SRP011999/SRS1284271/SRX1571544/SRR3162311/SRR3162311.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATHFE-09A-01R.expression.txt	3			
TARGET-10-PATHFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATHFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATHFE-09A-01R	RNA	EFO	SRS1284271	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATHFE-09A-01R SJALL016003_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	39.6	SJALL016003_D1_RNASEQ_1	SRX1571544		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATHFE-09A-01R SJALL016003_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATHFE-09A-01R.fastq	SRR3162311	@dbgap@:reads/SRP011999/SRS1284271/SRX1571544/SRR3162311/SRR3162311.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATHGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATHGY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATHGY-09A-01R	RNA	EFO	SRS1284272	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATHGY-09A-01R SJTALL022118_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	37.9	SJTALL022118_D2_RNASEQ_1	SRX1571545		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATHGY-09A-01R SJTALL022118_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATHGY-09A-01R.fastq	SRR3162312	@dbgap@:reads/SRP011999/SRS1284272/SRX1571545/SRR3162312/SRR3162312.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATHGY-09A-01R.expression.txt	3			
TARGET-10-PATHGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATHGY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATHGY-09A-01R	RNA	EFO	SRS1284272	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATHGY-09A-01R SJTALL022118_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	37.9	SJTALL022118_D2_RNASEQ_1	SRX1571545		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATHGY-09A-01R SJTALL022118_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATHGY-09A-01R.fastq	SRR3162312	@dbgap@:reads/SRP011999/SRS1284272/SRX1571545/SRR3162312/SRR3162312.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATHJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATHJF-09A-01R	RNA	EFO	SRS1284270	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATHJF-09A-01R SJTALL002072_D1-TARGET-10-PATHJF-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	36.1	SJTALL002072_D1-TARGET-10-PATHJF-09A-01D	SRX1571546		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATHJF-09A-01R SJTALL002072_D1-TARGET-10-PATHJF-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATHJF-09A-01R.fastq	SRR3162326	@dbgap@:reads/SRP011999/SRS1284270/SRX1571546/SRR3162326/SRR3162326.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATHJF-09A-01R.expression.txt	3			
TARGET-10-PATHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATHJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATHJF-09A-01R	RNA	EFO	SRS1284270	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATHJF-09A-01R SJTALL002072_D1-TARGET-10-PATHJF-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	36.1	SJTALL002072_D1-TARGET-10-PATHJF-09A-01D	SRX1571546		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATHJF-09A-01R SJTALL002072_D1-TARGET-10-PATHJF-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATHJF-09A-01R.fastq	SRR3162326	@dbgap@:reads/SRP011999/SRS1284270/SRX1571546/SRR3162326/SRR3162326.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATHRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATHRF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATHRF-09A-01R	RNA	EFO	SRS1284269	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATHRF-09A-01R SJALL015662_D1-TARGET-10-PATHRF-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	35.1	SJALL015662_D1-TARGET-10-PATHRF-09A-01	SRX1571547		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATHRF-09A-01R SJALL015662_D1-TARGET-10-PATHRF-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATHRF-09A-01R.fastq	SRR3162327	@dbgap@:reads/SRP011999/SRS1284269/SRX1571547/SRR3162327/SRR3162327.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATHRF-09A-01R.expression.txt	3			
TARGET-10-PATHRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATHRF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATHRF-09A-01R	RNA	EFO	SRS1284269	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATHRF-09A-01R SJALL015662_D1-TARGET-10-PATHRF-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	35.1	SJALL015662_D1-TARGET-10-PATHRF-09A-01	SRX1571547		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATHRF-09A-01R SJALL015662_D1-TARGET-10-PATHRF-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATHRF-09A-01R.fastq	SRR3162327	@dbgap@:reads/SRP011999/SRS1284269/SRX1571547/SRR3162327/SRR3162327.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATHWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATHWV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATHWV-09A-01R	RNA	EFO	SRS1284268	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATHWV-09A-01R SJTALL002080_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	38.3	SJTALL002080_D1_RNASEQ_1	SRX1571548		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATHWV-09A-01R SJTALL002080_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATHWV-09A-01R.fastq	SRR3162328	@dbgap@:reads/SRP011999/SRS1284268/SRX1571548/SRR3162328/SRR3162328.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATHWV-09A-01R.expression.txt	3			
TARGET-10-PATHWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATHWV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATHWV-09A-01R	RNA	EFO	SRS1284268	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATHWV-09A-01R SJTALL002080_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	38.3	SJTALL002080_D1_RNASEQ_1	SRX1571548		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATHWV-09A-01R SJTALL002080_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATHWV-09A-01R.fastq	SRR3162328	@dbgap@:reads/SRP011999/SRS1284268/SRX1571548/SRR3162328/SRR3162328.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATIBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATIBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATIBE-09A-01R	RNA	EFO	SRS1284267	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATIBE-09A-01R SJALL015663_D1-TARGET-10-PATIBE-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	36.7	SJALL015663_D1-TARGET-10-PATIBE-09A-01	SRX1571549		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATIBE-09A-01R SJALL015663_D1-TARGET-10-PATIBE-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATIBE-09A-01R.fastq	SRR3162329	@dbgap@:reads/SRP011999/SRS1284267/SRX1571549/SRR3162329/SRR3162329.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATIBE-09A-01R.expression.txt	3			
TARGET-10-PATIBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATIBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATIBE-09A-01R	RNA	EFO	SRS1284267	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATIBE-09A-01R SJALL015663_D1-TARGET-10-PATIBE-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	36.7	SJALL015663_D1-TARGET-10-PATIBE-09A-01	SRX1571549		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATIBE-09A-01R SJALL015663_D1-TARGET-10-PATIBE-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATIBE-09A-01R.fastq	SRR3162329	@dbgap@:reads/SRP011999/SRS1284267/SRX1571549/SRR3162329/SRR3162329.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATIKN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATIKN-03A-01R	RNA	EFO	SRS1284266	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATIKN-03A-01R SJALL015664_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	171	40.8	SJALL015664_D1_RNASEQ_1	SRX1571550		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATIKN-03A-01R SJALL015664_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATIKN-03A-01R.fastq	SRR3162330	@dbgap@:reads/SRP011999/SRS1284266/SRX1571550/SRR3162330/SRR3162330.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATIKN-03A-01R.expression.txt	3			
TARGET-10-PATIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATIKN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATIKN-03A-01R	RNA	EFO	SRS1284266	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATIKN-03A-01R SJALL015664_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	171	40.8	SJALL015664_D1_RNASEQ_1	SRX1571550		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATIKN-03A-01R SJALL015664_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATIKN-03A-01R.fastq	SRR3162330	@dbgap@:reads/SRP011999/SRS1284266/SRX1571550/SRR3162330/SRR3162330.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATITB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATITB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATITB-09A-01R	RNA	EFO	SRS1284265	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATITB-09A-01R SJALL015665_D1-TARGET-10-PATITB-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	33.9	SJALL015665_D1-TARGET-10-PATITB-09A-01	SRX1571551		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATITB-09A-01R SJALL015665_D1-TARGET-10-PATITB-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATITB-09A-01R.fastq	SRR3162331	@dbgap@:reads/SRP011999/SRS1284265/SRX1571551/SRR3162331/SRR3162331.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATITB-09A-01R.expression.txt	3			
TARGET-10-PATITB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATITB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATITB-09A-01R	RNA	EFO	SRS1284265	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATITB-09A-01R SJALL015665_D1-TARGET-10-PATITB-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	33.9	SJALL015665_D1-TARGET-10-PATITB-09A-01	SRX1571551		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATITB-09A-01R SJALL015665_D1-TARGET-10-PATITB-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATITB-09A-01R.fastq	SRR3162331	@dbgap@:reads/SRP011999/SRS1284265/SRX1571551/SRR3162331/SRR3162331.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATITY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATITY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATITY-09A-01R	RNA	EFO	SRS1284264	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATITY-09A-01R SJTALL002096_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	41.6	SJTALL002096_D1_RNASEQ_1	SRX1571552		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATITY-09A-01R SJTALL002096_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATITY-09A-01R.fastq	SRR3162332	@dbgap@:reads/SRP011999/SRS1284264/SRX1571552/SRR3162332/SRR3162332.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATITY-09A-01R.expression.txt	3			
TARGET-10-PATITY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATITY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATITY-09A-01R	RNA	EFO	SRS1284264	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATITY-09A-01R SJTALL002096_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	41.6	SJTALL002096_D1_RNASEQ_1	SRX1571552		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATITY-09A-01R SJTALL002096_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATITY-09A-01R.fastq	SRR3162332	@dbgap@:reads/SRP011999/SRS1284264/SRX1571552/SRR3162332/SRR3162332.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATJBC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATJBC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATJBC-09A-01R	RNA	EFO	SRS1284263	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATJBC-09A-01R SJALL015667_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	39.8	SJALL015667_D1_RNASEQ_1	SRX1571553		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATJBC-09A-01R SJALL015667_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATJBC-09A-01R.fastq	SRR3162333	@dbgap@:reads/SRP011999/SRS1284263/SRX1571553/SRR3162333/SRR3162333.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATJBC-09A-01R.expression.txt	3			
TARGET-10-PATJBC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATJBC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATJBC-09A-01R	RNA	EFO	SRS1284263	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATJBC-09A-01R SJALL015667_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	39.8	SJALL015667_D1_RNASEQ_1	SRX1571553		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATJBC-09A-01R SJALL015667_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATJBC-09A-01R.fastq	SRR3162333	@dbgap@:reads/SRP011999/SRS1284263/SRX1571553/SRR3162333/SRR3162333.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATJLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATJLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATJLT-09A-01R	RNA	EFO	SRS1284262	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATJLT-09A-01R SJALL015668_D1-TARGET-10-PATJLT-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	36.7	SJALL015668_D1-TARGET-10-PATJLT-09A-01	SRX1571554		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATJLT-09A-01R SJALL015668_D1-TARGET-10-PATJLT-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATJLT-09A-01R.fastq	SRR3162334	@dbgap@:reads/SRP011999/SRS1284262/SRX1571554/SRR3162334/SRR3162334.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATJLT-09A-01R.expression.txt	3			
TARGET-10-PATJLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATJLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATJLT-09A-01R	RNA	EFO	SRS1284262	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATJLT-09A-01R SJALL015668_D1-TARGET-10-PATJLT-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	36.7	SJALL015668_D1-TARGET-10-PATJLT-09A-01	SRX1571554		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATJLT-09A-01R SJALL015668_D1-TARGET-10-PATJLT-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATJLT-09A-01R.fastq	SRR3162334	@dbgap@:reads/SRP011999/SRS1284262/SRX1571554/SRR3162334/SRR3162334.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATJZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATJZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATJZK-09A-01R	RNA	EFO	SRS1284261	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATJZK-09A-01R SJTALL021689_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	169	39.8	SJTALL021689_D2_RNASEQ_1	SRX1571555		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATJZK-09A-01R SJTALL021689_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATJZK-09A-01R.fastq	SRR3162335	@dbgap@:reads/SRP011999/SRS1284261/SRX1571555/SRR3162335/SRR3162335.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATJZK-09A-01R.expression.txt	3			
TARGET-10-PATJZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATJZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATJZK-09A-01R	RNA	EFO	SRS1284261	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATJZK-09A-01R SJTALL021689_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	169	39.8	SJTALL021689_D2_RNASEQ_1	SRX1571555		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATJZK-09A-01R SJTALL021689_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATJZK-09A-01R.fastq	SRR3162335	@dbgap@:reads/SRP011999/SRS1284261/SRX1571555/SRR3162335/SRR3162335.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATKGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATKGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATKGP-09A-01R	RNA	EFO	SRS1284260	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATKGP-09A-01R SJALL015669_D1-TARGET-10-PATKGP-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	36.3	SJALL015669_D1-TARGET-10-PATKGP-09A-01	SRX1571556		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATKGP-09A-01R SJALL015669_D1-TARGET-10-PATKGP-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATKGP-09A-01R.fastq	SRR3162339	@dbgap@:reads/SRP011999/SRS1284260/SRX1571556/SRR3162339/SRR3162339.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATKGP-09A-01R.expression.txt	3			
TARGET-10-PATKGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATKGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATKGP-09A-01R	RNA	EFO	SRS1284260	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATKGP-09A-01R SJALL015669_D1-TARGET-10-PATKGP-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	36.3	SJALL015669_D1-TARGET-10-PATKGP-09A-01	SRX1571556		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATKGP-09A-01R SJALL015669_D1-TARGET-10-PATKGP-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATKGP-09A-01R.fastq	SRR3162339	@dbgap@:reads/SRP011999/SRS1284260/SRX1571556/SRR3162339/SRR3162339.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATKVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATKVD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATKVD-09A-01R	RNA	EFO	SRS1284259	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATKVD-09A-01R SJALL015670_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	39.8	SJALL015670_D1_RNASEQ_1	SRX1571557		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATKVD-09A-01R SJALL015670_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATKVD-09A-01R.fastq	SRR3162340	@dbgap@:reads/SRP011999/SRS1284259/SRX1571557/SRR3162340/SRR3162340.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATKVD-09A-01R.expression.txt	3			
TARGET-10-PATKVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATKVD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATKVD-09A-01R	RNA	EFO	SRS1284259	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATKVD-09A-01R SJALL015670_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	39.8	SJALL015670_D1_RNASEQ_1	SRX1571557		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATKVD-09A-01R SJALL015670_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATKVD-09A-01R.fastq	SRR3162340	@dbgap@:reads/SRP011999/SRS1284259/SRX1571557/SRR3162340/SRR3162340.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATKWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATKWU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATKWU-09A-01R	RNA	EFO	SRS1284258	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATKWU-09A-01R SJALL015671_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	40.6	SJALL015671_D1_RNASEQ_1	SRX1571558		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATKWU-09A-01R SJALL015671_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATKWU-09A-01R.fastq	SRR3162341	@dbgap@:reads/SRP011999/SRS1284258/SRX1571558/SRR3162341/SRR3162341.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATKWU-09A-01R.expression.txt	3			
TARGET-10-PATKWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATKWU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATKWU-09A-01R	RNA	EFO	SRS1284258	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATKWU-09A-01R SJALL015671_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	172	40.6	SJALL015671_D1_RNASEQ_1	SRX1571558		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATKWU-09A-01R SJALL015671_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATKWU-09A-01R.fastq	SRR3162341	@dbgap@:reads/SRP011999/SRS1284258/SRX1571558/SRR3162341/SRR3162341.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATKYI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATKYI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATKYI-09A-01R	RNA	EFO	SRS1284257	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATKYI-09A-01R SJALL016444_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	36.8	SJALL016444_D1_RNASEQ_1	SRX1571559		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATKYI-09A-01R SJALL016444_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATKYI-09A-01R.fastq	SRR3162342	@dbgap@:reads/SRP011999/SRS1284257/SRX1571559/SRR3162342/SRR3162342.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATKYI-09A-01R.expression.txt	3			
TARGET-10-PATKYI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATKYI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATKYI-09A-01R	RNA	EFO	SRS1284257	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATKYI-09A-01R SJALL016444_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	36.8	SJALL016444_D1_RNASEQ_1	SRX1571559		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATKYI-09A-01R SJALL016444_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATKYI-09A-01R.fastq	SRR3162342	@dbgap@:reads/SRP011999/SRS1284257/SRX1571559/SRR3162342/SRR3162342.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATLGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLGU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATLGU-09A-01R	RNA	EFO	SRS1284256	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATLGU-09A-01R SJTALL002077_D1-TARGET-10-PATLGU-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	38	SJTALL002077_D1-TARGET-10-PATLGU-09A-01D	SRX1571560		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATLGU-09A-01R SJTALL002077_D1-TARGET-10-PATLGU-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATLGU-09A-01R.fastq	SRR3162343	@dbgap@:reads/SRP011999/SRS1284256/SRX1571560/SRR3162343/SRR3162343.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATLGU-09A-01R.expression.txt	3			
TARGET-10-PATLGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLGU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATLGU-09A-01R	RNA	EFO	SRS1284256	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATLGU-09A-01R SJTALL002077_D1-TARGET-10-PATLGU-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	38	SJTALL002077_D1-TARGET-10-PATLGU-09A-01D	SRX1571560		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATLGU-09A-01R SJTALL002077_D1-TARGET-10-PATLGU-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATLGU-09A-01R.fastq	SRR3162343	@dbgap@:reads/SRP011999/SRS1284256/SRX1571560/SRR3162343/SRR3162343.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATLHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLHH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATLHH-09A-01R	RNA	EFO	SRS1284255	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATLHH-09A-01R SJALL015672_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	169	40.2	SJALL015672_D1_RNASEQ_1	SRX1571561		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATLHH-09A-01R SJALL015672_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATLHH-09A-01R.fastq	SRR3162344	@dbgap@:reads/SRP011999/SRS1284255/SRX1571561/SRR3162344/SRR3162344.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATLHH-09A-01R.expression.txt	3			
TARGET-10-PATLHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLHH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATLHH-09A-01R	RNA	EFO	SRS1284255	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATLHH-09A-01R SJALL015672_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	169	40.2	SJALL015672_D1_RNASEQ_1	SRX1571561		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATLHH-09A-01R SJALL015672_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATLHH-09A-01R.fastq	SRR3162344	@dbgap@:reads/SRP011999/SRS1284255/SRX1571561/SRR3162344/SRR3162344.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATLHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATLHS-09A-01R	RNA	EFO	SRS1284254	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATLHS-09A-01R SJTALL022123_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	34.4	SJTALL022123_D2_RNASEQ_1	SRX1571562		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATLHS-09A-01R SJTALL022123_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATLHS-09A-01R.fastq	SRR3162345	@dbgap@:reads/SRP011999/SRS1284254/SRX1571562/SRR3162345/SRR3162345.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATLHS-09A-01R.expression.txt	3			
TARGET-10-PATLHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATLHS-09A-01R	RNA	EFO	SRS1284254	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATLHS-09A-01R SJTALL022123_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	34.4	SJTALL022123_D2_RNASEQ_1	SRX1571562		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATLHS-09A-01R SJTALL022123_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATLHS-09A-01R.fastq	SRR3162345	@dbgap@:reads/SRP011999/SRS1284254/SRX1571562/SRR3162345/SRR3162345.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATLMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLMA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATLMA-03A-01R	RNA	EFO	SRS1284253	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATLMA-03A-01R SJTALL002089_D1-TARGET-10-PATLMA-03A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	169	38.9	SJTALL002089_D1-TARGET-10-PATLMA-03A-01D	SRX1571563		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATLMA-03A-01R SJTALL002089_D1-TARGET-10-PATLMA-03A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATLMA-03A-01R.fastq	SRR3162346	@dbgap@:reads/SRP011999/SRS1284253/SRX1571563/SRR3162346/SRR3162346.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATLMA-03A-01R.expression.txt	3			
TARGET-10-PATLMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLMA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATLMA-03A-01R	RNA	EFO	SRS1284253	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATLMA-03A-01R SJTALL002089_D1-TARGET-10-PATLMA-03A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	169	38.9	SJTALL002089_D1-TARGET-10-PATLMA-03A-01D	SRX1571563		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATLMA-03A-01R SJTALL002089_D1-TARGET-10-PATLMA-03A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATLMA-03A-01R.fastq	SRR3162346	@dbgap@:reads/SRP011999/SRS1284253/SRX1571563/SRR3162346/SRR3162346.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATLNS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLNS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATLNS-09A-01R	RNA	EFO	SRS1284252	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATLNS-09A-01R SJALL015673_D1-TARGET-10-PATLNS-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	35.7	SJALL015673_D1-TARGET-10-PATLNS-09A-01	SRX1571564		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATLNS-09A-01R SJALL015673_D1-TARGET-10-PATLNS-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATLNS-09A-01R.fastq	SRR3162347	@dbgap@:reads/SRP011999/SRS1284252/SRX1571564/SRR3162347/SRR3162347.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATLNS-09A-01R.expression.txt	3			
TARGET-10-PATLNS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLNS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATLNS-09A-01R	RNA	EFO	SRS1284252	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATLNS-09A-01R SJALL015673_D1-TARGET-10-PATLNS-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	35.7	SJALL015673_D1-TARGET-10-PATLNS-09A-01	SRX1571564		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATLNS-09A-01R SJALL015673_D1-TARGET-10-PATLNS-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATLNS-09A-01R.fastq	SRR3162347	@dbgap@:reads/SRP011999/SRS1284252/SRX1571564/SRR3162347/SRR3162347.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATLNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLNZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATLNZ-09A-01R	RNA	EFO	SRS1284251	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATLNZ-09A-01R SJALL015674_D1-TARGET-10-PATLNZ-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	155	31.5	SJALL015674_D1-TARGET-10-PATLNZ-09A-01	SRX1571565		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATLNZ-09A-01R SJALL015674_D1-TARGET-10-PATLNZ-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATLNZ-09A-01R.fastq	SRR3162348	@dbgap@:reads/SRP011999/SRS1284251/SRX1571565/SRR3162348/SRR3162348.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATLNZ-09A-01R.expression.txt	3			
TARGET-10-PATLNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLNZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATLNZ-09A-01R	RNA	EFO	SRS1284251	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATLNZ-09A-01R SJALL015674_D1-TARGET-10-PATLNZ-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	155	31.5	SJALL015674_D1-TARGET-10-PATLNZ-09A-01	SRX1571565		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATLNZ-09A-01R SJALL015674_D1-TARGET-10-PATLNZ-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATLNZ-09A-01R.fastq	SRR3162348	@dbgap@:reads/SRP011999/SRS1284251/SRX1571565/SRR3162348/SRR3162348.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATLPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLPN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATLPN-03A-01R	RNA	EFO	SRS1284250	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATLPN-03A-01R SJALL015675_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	39.6	SJALL015675_D1_RNASEQ_1	SRX1571566		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATLPN-03A-01R SJALL015675_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATLPN-03A-01R.fastq	SRR3162349	@dbgap@:reads/SRP011999/SRS1284250/SRX1571566/SRR3162349/SRR3162349.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATLPN-03A-01R.expression.txt	3			
TARGET-10-PATLPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLPN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATLPN-03A-01R	RNA	EFO	SRS1284250	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATLPN-03A-01R SJALL015675_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	39.6	SJALL015675_D1_RNASEQ_1	SRX1571566		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATLPN-03A-01R SJALL015675_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATLPN-03A-01R.fastq	SRR3162349	@dbgap@:reads/SRP011999/SRS1284250/SRX1571566/SRR3162349/SRR3162349.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATLRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATLRZ-09A-01R	RNA	EFO	SRS1284249	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATLRZ-09A-01R SJTALL002105_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	174	39.6	SJTALL002105_D1_RNASEQ_1	SRX1571567		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATLRZ-09A-01R SJTALL002105_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATLRZ-09A-01R.fastq	SRR3162350	@dbgap@:reads/SRP011999/SRS1284249/SRX1571567/SRR3162350/SRR3162350.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATLRZ-09A-01R.expression.txt	3			
TARGET-10-PATLRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATLRZ-09A-01R	RNA	EFO	SRS1284249	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATLRZ-09A-01R SJTALL002105_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	174	39.6	SJTALL002105_D1_RNASEQ_1	SRX1571567		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATLRZ-09A-01R SJTALL002105_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATLRZ-09A-01R.fastq	SRR3162350	@dbgap@:reads/SRP011999/SRS1284249/SRX1571567/SRR3162350/SRR3162350.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATMAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATMAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATMAF-09A-01R	RNA	EFO	SRS1284248	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATMAF-09A-01R SJTALL002109_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	171	38.4	SJTALL002109_D1_RNASEQ_1	SRX1571568		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATMAF-09A-01R SJTALL002109_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATMAF-09A-01R.fastq	SRR3162351	@dbgap@:reads/SRP011999/SRS1284248/SRX1571568/SRR3162351/SRR3162351.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATMAF-09A-01R.expression.txt	3			
TARGET-10-PATMAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATMAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATMAF-09A-01R	RNA	EFO	SRS1284248	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATMAF-09A-01R SJTALL002109_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	171	38.4	SJTALL002109_D1_RNASEQ_1	SRX1571568		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATMAF-09A-01R SJTALL002109_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATMAF-09A-01R.fastq	SRR3162351	@dbgap@:reads/SRP011999/SRS1284248/SRX1571568/SRR3162351/SRR3162351.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATMRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATMRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATMRE-09A-01R	RNA	EFO	SRS1284247	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATMRE-09A-01R SJTALL002113_D1-TARGET-10-PATMRE-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	34.7	SJTALL002113_D1-TARGET-10-PATMRE-09A-01	SRX1571569		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATMRE-09A-01R SJTALL002113_D1-TARGET-10-PATMRE-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATMRE-09A-01R.fastq	SRR3162352	@dbgap@:reads/SRP011999/SRS1284247/SRX1571569/SRR3162352/SRR3162352.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATMRE-09A-01R.expression.txt	3			
TARGET-10-PATMRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATMRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATMRE-09A-01R	RNA	EFO	SRS1284247	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATMRE-09A-01R SJTALL002113_D1-TARGET-10-PATMRE-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	160	34.7	SJTALL002113_D1-TARGET-10-PATMRE-09A-01	SRX1571569		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATMRE-09A-01R SJTALL002113_D1-TARGET-10-PATMRE-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATMRE-09A-01R.fastq	SRR3162352	@dbgap@:reads/SRP011999/SRS1284247/SRX1571569/SRR3162352/SRR3162352.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATMTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATMTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATMTV-09A-01R	RNA	EFO	SRS1284246	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATMTV-09A-01R SJALL015678_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	169	38.3	SJALL015678_D1_RNASEQ_1	SRX1571570		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATMTV-09A-01R SJALL015678_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATMTV-09A-01R.fastq	SRR3162353	@dbgap@:reads/SRP011999/SRS1284246/SRX1571570/SRR3162353/SRR3162353.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATMTV-09A-01R.expression.txt	3			
TARGET-10-PATMTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATMTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATMTV-09A-01R	RNA	EFO	SRS1284246	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATMTV-09A-01R SJALL015678_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	169	38.3	SJALL015678_D1_RNASEQ_1	SRX1571570		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATMTV-09A-01R SJALL015678_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATMTV-09A-01R.fastq	SRR3162353	@dbgap@:reads/SRP011999/SRS1284246/SRX1571570/SRR3162353/SRR3162353.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATMVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATMVH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATMVH-09A-01R	RNA	EFO	SRS1284245	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATMVH-09A-01R SJTALL021697_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	38	SJTALL021697_D2_RNASEQ_1	SRX1571571		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATMVH-09A-01R SJTALL021697_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATMVH-09A-01R.fastq	SRR3162354	@dbgap@:reads/SRP011999/SRS1284245/SRX1571571/SRR3162354/SRR3162354.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATMVH-09A-01R.expression.txt	3			
TARGET-10-PATMVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATMVH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATMVH-09A-01R	RNA	EFO	SRS1284245	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATMVH-09A-01R SJTALL021697_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	38	SJTALL021697_D2_RNASEQ_1	SRX1571571		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATMVH-09A-01R SJTALL021697_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATMVH-09A-01R.fastq	SRR3162354	@dbgap@:reads/SRP011999/SRS1284245/SRX1571571/SRR3162354/SRR3162354.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATMXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATMXN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATMXN-09A-01R	RNA	EFO	SRS1284244	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATMXN-09A-01R SJTALL002078_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	40.5	SJTALL002078_D1_RNASEQ_1	SRX1571572		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATMXN-09A-01R SJTALL002078_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATMXN-09A-01R.fastq	SRR3162355	@dbgap@:reads/SRP011999/SRS1284244/SRX1571572/SRR3162355/SRR3162355.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATMXN-09A-01R.expression.txt	3			
TARGET-10-PATMXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATMXN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATMXN-09A-01R	RNA	EFO	SRS1284244	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATMXN-09A-01R SJTALL002078_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	40.5	SJTALL002078_D1_RNASEQ_1	SRX1571572		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATMXN-09A-01R SJTALL002078_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATMXN-09A-01R.fastq	SRR3162355	@dbgap@:reads/SRP011999/SRS1284244/SRX1571572/SRR3162355/SRR3162355.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATMYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATMYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATMYZ-09A-01R	RNA	EFO	SRS1284243	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATMYZ-09A-01R SJALL015679_D1-TARGET-10-PATMYZ-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	158	34.1	SJALL015679_D1-TARGET-10-PATMYZ-09A-01	SRX1571573		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATMYZ-09A-01R SJALL015679_D1-TARGET-10-PATMYZ-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATMYZ-09A-01R.fastq	SRR3162356	@dbgap@:reads/SRP011999/SRS1284243/SRX1571573/SRR3162356/SRR3162356.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATMYZ-09A-01R.expression.txt	3			
TARGET-10-PATMYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATMYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATMYZ-09A-01R	RNA	EFO	SRS1284243	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATMYZ-09A-01R SJALL015679_D1-TARGET-10-PATMYZ-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	158	34.1	SJALL015679_D1-TARGET-10-PATMYZ-09A-01	SRX1571573		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATMYZ-09A-01R SJALL015679_D1-TARGET-10-PATMYZ-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATMYZ-09A-01R.fastq	SRR3162356	@dbgap@:reads/SRP011999/SRS1284243/SRX1571573/SRR3162356/SRR3162356.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATNAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATNAM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATNAM-09A-01R	RNA	EFO	SRS1284242	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATNAM-09A-01R SJALL015680_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	39.1	SJALL015680_D1_RNASEQ_1	SRX1571574		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATNAM-09A-01R SJALL015680_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATNAM-09A-01R.fastq	SRR3162357	@dbgap@:reads/SRP011999/SRS1284242/SRX1571574/SRR3162357/SRR3162357.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATNAM-09A-01R.expression.txt	3			
TARGET-10-PATNAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATNAM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATNAM-09A-01R	RNA	EFO	SRS1284242	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATNAM-09A-01R SJALL015680_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	39.1	SJALL015680_D1_RNASEQ_1	SRX1571574		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATNAM-09A-01R SJALL015680_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATNAM-09A-01R.fastq	SRR3162357	@dbgap@:reads/SRP011999/SRS1284242/SRX1571574/SRR3162357/SRR3162357.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATNIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATNIA-09A-01R	RNA	EFO	SRS1284241	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATNIA-09A-01R SJALL015681_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	169	39.3	SJALL015681_D1_RNASEQ_1	SRX1571575		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATNIA-09A-01R SJALL015681_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATNIA-09A-01R.fastq	SRR3162358	@dbgap@:reads/SRP011999/SRS1284241/SRX1571575/SRR3162358/SRR3162358.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATNIA-09A-01R.expression.txt	3			
TARGET-10-PATNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATNIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATNIA-09A-01R	RNA	EFO	SRS1284241	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATNIA-09A-01R SJALL015681_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	169	39.3	SJALL015681_D1_RNASEQ_1	SRX1571575		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATNIA-09A-01R SJALL015681_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATNIA-09A-01R.fastq	SRR3162358	@dbgap@:reads/SRP011999/SRS1284241/SRX1571575/SRR3162358/SRR3162358.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATPDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATPDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATPDA-09A-01R	RNA	EFO	SRS1284240	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATPDA-09A-01R SJALL015682_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	38.1	SJALL015682_D1_RNASEQ_1	SRX1571576		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATPDA-09A-01R SJALL015682_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATPDA-09A-01R.fastq	SRR3162359	@dbgap@:reads/SRP011999/SRS1284240/SRX1571576/SRR3162359/SRR3162359.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATPDA-09A-01R.expression.txt	3			
TARGET-10-PATPDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATPDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATPDA-09A-01R	RNA	EFO	SRS1284240	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATPDA-09A-01R SJALL015682_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	38.1	SJALL015682_D1_RNASEQ_1	SRX1571576		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATPDA-09A-01R SJALL015682_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATPDA-09A-01R.fastq	SRR3162359	@dbgap@:reads/SRP011999/SRS1284240/SRX1571576/SRR3162359/SRR3162359.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATPGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATPGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATPGE-09A-01R	RNA	EFO	SRS1284239	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATPGE-09A-01R SJTALL021698_D2-TARGET-10-PATPGE-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	36.1	SJTALL021698_D2-TARGET-10-PATPGE-09A-01	SRX1571577		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATPGE-09A-01R SJTALL021698_D2-TARGET-10-PATPGE-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATPGE-09A-01R.fastq	SRR3162360	@dbgap@:reads/SRP011999/SRS1284239/SRX1571577/SRR3162360/SRR3162360.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATPGE-09A-01R.expression.txt	3			
TARGET-10-PATPGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATPGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATPGE-09A-01R	RNA	EFO	SRS1284239	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATPGE-09A-01R SJTALL021698_D2-TARGET-10-PATPGE-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	36.1	SJTALL021698_D2-TARGET-10-PATPGE-09A-01	SRX1571577		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATPGE-09A-01R SJTALL021698_D2-TARGET-10-PATPGE-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATPGE-09A-01R.fastq	SRR3162360	@dbgap@:reads/SRP011999/SRS1284239/SRX1571577/SRR3162360/SRR3162360.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATPWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATPWF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATPWF-03A-01R	RNA	EFO	SRS1284238	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATPWF-03A-01R SJALL015683_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	38.2	SJALL015683_D1_RNASEQ_1	SRX1571578		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATPWF-03A-01R SJALL015683_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATPWF-03A-01R.fastq	SRR3162361	@dbgap@:reads/SRP011999/SRS1284238/SRX1571578/SRR3162361/SRR3162361.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATPWF-03A-01R.expression.txt	3			
TARGET-10-PATPWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATPWF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATPWF-03A-01R	RNA	EFO	SRS1284238	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATPWF-03A-01R SJALL015683_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	38.2	SJALL015683_D1_RNASEQ_1	SRX1571578		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATPWF-03A-01R SJALL015683_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATPWF-03A-01R.fastq	SRR3162361	@dbgap@:reads/SRP011999/SRS1284238/SRX1571578/SRR3162361/SRR3162361.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATRAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATRAB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATRAB-09A-01R	RNA	EFO	SRS1284237	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATRAB-09A-01R SJALL015684_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	38.9	SJALL015684_D1_RNASEQ_1	SRX1571579		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATRAB-09A-01R SJALL015684_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATRAB-09A-01R.fastq	SRR3162362	@dbgap@:reads/SRP011999/SRS1284237/SRX1571579/SRR3162362/SRR3162362.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATRAB-09A-01R.expression.txt	3			
TARGET-10-PATRAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATRAB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATRAB-09A-01R	RNA	EFO	SRS1284237	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATRAB-09A-01R SJALL015684_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	38.9	SJALL015684_D1_RNASEQ_1	SRX1571579		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATRAB-09A-01R SJALL015684_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATRAB-09A-01R.fastq	SRR3162362	@dbgap@:reads/SRP011999/SRS1284237/SRX1571579/SRR3162362/SRR3162362.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATRGV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATRGV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATRGV-09A-01R	RNA	EFO	SRS1284236	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATRGV-09A-01R SJTALL002110_D1-TARGET-10-PATRGV-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	35.9	SJTALL002110_D1-TARGET-10-PATRGV-09A-01D	SRX1571580		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATRGV-09A-01R SJTALL002110_D1-TARGET-10-PATRGV-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATRGV-09A-01R.fastq	SRR3162363	@dbgap@:reads/SRP011999/SRS1284236/SRX1571580/SRR3162363/SRR3162363.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATRGV-09A-01R.expression.txt	3			
TARGET-10-PATRGV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATRGV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATRGV-09A-01R	RNA	EFO	SRS1284236	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATRGV-09A-01R SJTALL002110_D1-TARGET-10-PATRGV-09A-01D library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	35.9	SJTALL002110_D1-TARGET-10-PATRGV-09A-01D	SRX1571580		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATRGV-09A-01R SJTALL002110_D1-TARGET-10-PATRGV-09A-01D run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATRGV-09A-01R.fastq	SRR3162363	@dbgap@:reads/SRP011999/SRS1284236/SRX1571580/SRR3162363/SRR3162363.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATRHL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATRHL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATRHL-09A-01R	RNA	EFO	SRS1284235	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATRHL-09A-01R SJALL015685_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	171	39.2	SJALL015685_D1_RNASEQ_1	SRX1571581		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATRHL-09A-01R SJALL015685_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATRHL-09A-01R.fastq	SRR3162364	@dbgap@:reads/SRP011999/SRS1284235/SRX1571581/SRR3162364/SRR3162364.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATRHL-09A-01R.expression.txt	3			
TARGET-10-PATRHL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATRHL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATRHL-09A-01R	RNA	EFO	SRS1284235	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATRHL-09A-01R SJALL015685_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	171	39.2	SJALL015685_D1_RNASEQ_1	SRX1571581		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATRHL-09A-01R SJALL015685_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATRHL-09A-01R.fastq	SRR3162364	@dbgap@:reads/SRP011999/SRS1284235/SRX1571581/SRR3162364/SRR3162364.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATRNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATRNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATRNA-09A-01R	RNA	EFO	SRS1284234	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATRNA-09A-01R SJTALL002118_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	36.9	SJTALL002118_D1_RNASEQ_1	SRX1571582		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATRNA-09A-01R SJTALL002118_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATRNA-09A-01R.fastq	SRR3162365	@dbgap@:reads/SRP011999/SRS1284234/SRX1571582/SRR3162365/SRR3162365.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATRNA-09A-01R.expression.txt	3			
TARGET-10-PATRNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATRNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATRNA-09A-01R	RNA	EFO	SRS1284234	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATRNA-09A-01R SJTALL002118_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	36.9	SJTALL002118_D1_RNASEQ_1	SRX1571582		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATRNA-09A-01R SJTALL002118_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATRNA-09A-01R.fastq	SRR3162365	@dbgap@:reads/SRP011999/SRS1284234/SRX1571582/SRR3162365/SRR3162365.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATRUN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATRUN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATRUN-09A-01R	RNA	EFO	SRS1284233	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATRUN-09A-01R SJALL015686_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	37.7	SJALL015686_D1_RNASEQ_1	SRX1571583		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATRUN-09A-01R SJALL015686_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATRUN-09A-01R.fastq	SRR3162366	@dbgap@:reads/SRP011999/SRS1284233/SRX1571583/SRR3162366/SRR3162366.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATRUN-09A-01R.expression.txt	3			
TARGET-10-PATRUN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATRUN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATRUN-09A-01R	RNA	EFO	SRS1284233	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATRUN-09A-01R SJALL015686_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	37.7	SJALL015686_D1_RNASEQ_1	SRX1571583		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATRUN-09A-01R SJALL015686_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATRUN-09A-01R.fastq	SRR3162366	@dbgap@:reads/SRP011999/SRS1284233/SRX1571583/SRR3162366/SRR3162366.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATRXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATRXL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATRXL-09A-01R	RNA	EFO	SRS1284232	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATRXL-09A-01R SJTALL022659_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	171	38.1	SJTALL022659_D2_RNASEQ_1	SRX1571584		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATRXL-09A-01R SJTALL022659_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATRXL-09A-01R.fastq	SRR3162367	@dbgap@:reads/SRP011999/SRS1284232/SRX1571584/SRR3162367/SRR3162367.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATRXL-09A-01R.expression.txt	3			
TARGET-10-PATRXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATRXL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATRXL-09A-01R	RNA	EFO	SRS1284232	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATRXL-09A-01R SJTALL022659_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	171	38.1	SJTALL022659_D2_RNASEQ_1	SRX1571584		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATRXL-09A-01R SJTALL022659_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATRXL-09A-01R.fastq	SRR3162367	@dbgap@:reads/SRP011999/SRS1284232/SRX1571584/SRR3162367/SRR3162367.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATSDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATSDS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATSDS-03A-01R	RNA	EFO	SRS1284231	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATSDS-03A-01R SJALL015687_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	36.9	SJALL015687_D1_RNASEQ_1	SRX1571585		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATSDS-03A-01R SJALL015687_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATSDS-03A-01R.fastq	SRR3162368	@dbgap@:reads/SRP011999/SRS1284231/SRX1571585/SRR3162368/SRR3162368.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATSDS-03A-01R.expression.txt	3			
TARGET-10-PATSDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATSDS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATSDS-03A-01R	RNA	EFO	SRS1284231	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATSDS-03A-01R SJALL015687_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	36.9	SJALL015687_D1_RNASEQ_1	SRX1571585		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATSDS-03A-01R SJALL015687_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATSDS-03A-01R.fastq	SRR3162368	@dbgap@:reads/SRP011999/SRS1284231/SRX1571585/SRR3162368/SRR3162368.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATSIL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATSIL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATSIL-09A-01R	RNA	EFO	SRS1284230	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATSIL-09A-01R SJALL015688_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	174	40.7	SJALL015688_D1_RNASEQ_1	SRX1571586		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATSIL-09A-01R SJALL015688_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATSIL-09A-01R.fastq	SRR3162313	@dbgap@:reads/SRP011999/SRS1284230/SRX1571586/SRR3162313/SRR3162313.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATSIL-09A-01R.expression.txt	3			
TARGET-10-PATSIL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATSIL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATSIL-09A-01R	RNA	EFO	SRS1284230	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATSIL-09A-01R SJALL015688_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	174	40.7	SJALL015688_D1_RNASEQ_1	SRX1571586		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATSIL-09A-01R SJALL015688_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATSIL-09A-01R.fastq	SRR3162313	@dbgap@:reads/SRP011999/SRS1284230/SRX1571586/SRR3162313/SRR3162313.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATSIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATSIY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATSIY-09A-01R	RNA	EFO	SRS1284229	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATSIY-09A-01R SJALL015689_D1-TARGET-10-PATSIY-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	159	34.2	SJALL015689_D1-TARGET-10-PATSIY-09A-01	SRX1571587		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATSIY-09A-01R SJALL015689_D1-TARGET-10-PATSIY-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATSIY-09A-01R.fastq	SRR3162369	@dbgap@:reads/SRP011999/SRS1284229/SRX1571587/SRR3162369/SRR3162369.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATSIY-09A-01R.expression.txt	3			
TARGET-10-PATSIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATSIY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATSIY-09A-01R	RNA	EFO	SRS1284229	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATSIY-09A-01R SJALL015689_D1-TARGET-10-PATSIY-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	159	34.2	SJALL015689_D1-TARGET-10-PATSIY-09A-01	SRX1571587		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATSIY-09A-01R SJALL015689_D1-TARGET-10-PATSIY-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATSIY-09A-01R.fastq	SRR3162369	@dbgap@:reads/SRP011999/SRS1284229/SRX1571587/SRR3162369/SRR3162369.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATSLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATSLH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATSLH-09A-01R	RNA	EFO	SRS1284228	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATSLH-09A-01R SJALL015690_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	37	SJALL015690_D1_RNASEQ_1	SRX1571588		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATSLH-09A-01R SJALL015690_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATSLH-09A-01R.fastq	SRR3162370	@dbgap@:reads/SRP011999/SRS1284228/SRX1571588/SRR3162370/SRR3162370.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATSLH-09A-01R.expression.txt	3			
TARGET-10-PATSLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATSLH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATSLH-09A-01R	RNA	EFO	SRS1284228	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATSLH-09A-01R SJALL015690_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	37	SJALL015690_D1_RNASEQ_1	SRX1571588		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATSLH-09A-01R SJALL015690_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATSLH-09A-01R.fastq	SRR3162370	@dbgap@:reads/SRP011999/SRS1284228/SRX1571588/SRR3162370/SRR3162370.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PATTEE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATTEE-03A-02R	RNA	EFO	SRS602213	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATTEE-03A-02R A33596 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33596	SRX547676	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PATTEE-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PATTEE-03A-02R A33596 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2192-1./A33596.fastq	SRR1791014	@dbgap@:reads/SRP011999/SRS602213/SRX547676/SRR1791014/SRR1791014.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_8_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293025	@dbgap@:reads/SRP011999/SRS602213/SRX547676/SRR1293025/SRR1293025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PATTEE-03A-02R.exon.quantification.txt	3			
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PATTEE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATTEE-03A-02R	RNA	EFO	SRS602213	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATTEE-03A-02R A33596 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33596	SRX547676	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PATTEE-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PATTEE-03A-02R A33596 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2192-1./A33596.fastq	SRR1791014	@dbgap@:reads/SRP011999/SRS602213/SRX547676/SRR1791014/SRR1791014.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_8_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293025	@dbgap@:reads/SRP011999/SRS602213/SRX547676/SRR1293025/SRR1293025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PATTEE-03A-02R.gene.quantification.txt	3			
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PATTEE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATTEE-03A-02R	RNA	EFO	SRS602213	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATTEE-03A-02R A33596 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33596	SRX547676	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PATTEE-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PATTEE-03A-02R A33596 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2192-1./A33596.fastq	SRR1791014	@dbgap@:reads/SRP011999/SRS602213/SRX547676/SRR1791014/SRR1791014.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_8_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293025	@dbgap@:reads/SRP011999/SRS602213/SRX547676/SRR1293025/SRR1293025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-Expression:01		TARGET-10-PATTEE-03A-02R.isoform.quantification.txt	3			
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PATTEE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATTEE-03A-02R	RNA	EFO	SRS602213	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATTEE-03A-02R A33596 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33596	SRX547676	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PATTEE-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PATTEE-03A-02R A33596 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2192-1./A33596.fastq	SRR1791014	@dbgap@:reads/SRP011999/SRS602213/SRX547676/SRR1791014/SRR1791014.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_8_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293025	@dbgap@:reads/SRP011999/SRS602213/SRX547676/SRR1293025/SRR1293025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PATTEE-03A-02R.fusion.vcf	3			
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PATTEE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATTEE-03A-02R	RNA	EFO	SRS602213	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATTEE-03A-02R A33596 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33596	SRX547676	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PATTEE-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PATTEE-03A-02R A33596 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2192-1./A33596.fastq	SRR1791014	@dbgap@:reads/SRP011999/SRS602213/SRX547676/SRR1791014/SRR1791014.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_8_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293025	@dbgap@:reads/SRP011999/SRS602213/SRX547676/SRR1293025/SRR1293025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-StructVariant-TransABySS:01		TARGET-10-PATTEE-03A-02R.indel.vcf	3			
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PATTEE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATTEE-03A-02R	RNA	EFO	SRS602213	bcgsc.ca:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATTEE-03A-02R A33596 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA			A33596	SRX547676	"RNA-Seq analysis of acute lymphoblastic leukemia sample TARGET-10-PATTEE-03A-02R using Illumina HiSeq 2000"	bcgsc.ca:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-11-19	TARGET-10-PATTEE-03A-02R A33596 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:mRNAseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	IX2192-1./A33596.fastq	SRR1791014	@dbgap@:reads/SRP011999/SRS602213/SRX547676/SRR1791014/SRR1791014.sra	1	"LOW SEQUENCE YIELD/DIVERSITY (genes detected < 17000)"	bcgsc.ca:Protocol:mRNAseq-ReadAlign-BWA-Picard:01	C34UCACXX_8_AGGCCG_withJunctionsOnGenome_dupsFlagged.bam	SRR1293025	@dbgap@:reads/SRP011999/SRS602213/SRX547676/SRR1293025/SRR1293025.sra	2	GRCh37-lite	bcgsc.ca:Protocol:mRNAseq-VariantCall-SNVMix2:01	bcgsc.ca:Protocol:mRNAseq-SNVMix2-Vcf2Maf:01	TARGET-10-PATTEE-03A-02R.format_1.1.rna_tumor.maf.txt	3			
TARGET-10-PATTHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATTHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATTHR-09A-01R	RNA	EFO	SRS1284227	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATTHR-09A-01R SJTALL002142_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	36.7	SJTALL002142_D1_RNASEQ_1	SRX1571589		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATTHR-09A-01R SJTALL002142_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATTHR-09A-01R.fastq	SRR3162371	@dbgap@:reads/SRP011999/SRS1284227/SRX1571589/SRR3162371/SRR3162371.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATTHR-09A-01R.expression.txt	3			
TARGET-10-PATTHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATTHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATTHR-09A-01R	RNA	EFO	SRS1284227	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATTHR-09A-01R SJTALL002142_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	36.7	SJTALL002142_D1_RNASEQ_1	SRX1571589		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATTHR-09A-01R SJTALL002142_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATTHR-09A-01R.fastq	SRR3162371	@dbgap@:reads/SRP011999/SRS1284227/SRX1571589/SRR3162371/SRR3162371.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATVDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATVDA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATVDA-03A-01R	RNA	EFO	SRS1284226	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATVDA-03A-01R SJTALL002146_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	36.1	SJTALL002146_D1_RNASEQ_1	SRX1571590		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATVDA-03A-01R SJTALL002146_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATVDA-03A-01R.fastq	SRR3162372	@dbgap@:reads/SRP011999/SRS1284226/SRX1571590/SRR3162372/SRR3162372.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATVDA-03A-01R.expression.txt	3			
TARGET-10-PATVDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATVDA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATVDA-03A-01R	RNA	EFO	SRS1284226	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATVDA-03A-01R SJTALL002146_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	36.1	SJTALL002146_D1_RNASEQ_1	SRX1571590		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATVDA-03A-01R SJTALL002146_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATVDA-03A-01R.fastq	SRR3162372	@dbgap@:reads/SRP011999/SRS1284226/SRX1571590/SRR3162372/SRR3162372.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATWHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATWHB-09A-01R	RNA	EFO	SRS1284225	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATWHB-09A-01R SJALL015691_D1-TARGET-10-PATWHB-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	34.9	SJALL015691_D1-TARGET-10-PATWHB-09A-01	SRX1571591		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATWHB-09A-01R SJALL015691_D1-TARGET-10-PATWHB-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATWHB-09A-01R.fastq	SRR3162373	@dbgap@:reads/SRP011999/SRS1284225/SRX1571591/SRR3162373/SRR3162373.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATWHB-09A-01R.expression.txt	3			
TARGET-10-PATWHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATWHB-09A-01R	RNA	EFO	SRS1284225	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATWHB-09A-01R SJALL015691_D1-TARGET-10-PATWHB-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	34.9	SJALL015691_D1-TARGET-10-PATWHB-09A-01	SRX1571591		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATWHB-09A-01R SJALL015691_D1-TARGET-10-PATWHB-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATWHB-09A-01R.fastq	SRR3162373	@dbgap@:reads/SRP011999/SRS1284225/SRX1571591/SRR3162373/SRR3162373.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATWIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWIJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATWIJ-09A-01R	RNA	EFO	SRS1284224	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATWIJ-09A-01R SJTALL002154_D1-TARGET-10-PATWIJ-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	34.7	SJTALL002154_D1-TARGET-10-PATWIJ-09A-01	SRX1571592		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATWIJ-09A-01R SJTALL002154_D1-TARGET-10-PATWIJ-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATWIJ-09A-01R.fastq	SRR3162374	@dbgap@:reads/SRP011999/SRS1284224/SRX1571592/SRR3162374/SRR3162374.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATWIJ-09A-01R.expression.txt	3			
TARGET-10-PATWIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWIJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATWIJ-09A-01R	RNA	EFO	SRS1284224	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATWIJ-09A-01R SJTALL002154_D1-TARGET-10-PATWIJ-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	34.7	SJTALL002154_D1-TARGET-10-PATWIJ-09A-01	SRX1571592		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATWIJ-09A-01R SJTALL002154_D1-TARGET-10-PATWIJ-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATWIJ-09A-01R.fastq	SRR3162374	@dbgap@:reads/SRP011999/SRS1284224/SRX1571592/SRR3162374/SRR3162374.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATWJU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWJU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATWJU-09A-01R	RNA	EFO	SRS1284223	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATWJU-09A-01R SJTALL022660_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	35.7	SJTALL022660_D2_RNASEQ_1	SRX1571593		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATWJU-09A-01R SJTALL022660_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATWJU-09A-01R.fastq	SRR3162375	@dbgap@:reads/SRP011999/SRS1284223/SRX1571593/SRR3162375/SRR3162375.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATWJU-09A-01R.expression.txt	3			
TARGET-10-PATWJU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWJU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATWJU-09A-01R	RNA	EFO	SRS1284223	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATWJU-09A-01R SJTALL022660_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	35.7	SJTALL022660_D2_RNASEQ_1	SRX1571593		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATWJU-09A-01R SJTALL022660_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATWJU-09A-01R.fastq	SRR3162375	@dbgap@:reads/SRP011999/SRS1284223/SRX1571593/SRR3162375/SRR3162375.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATWNL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWNL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATWNL-09A-01R	RNA	EFO	SRS1284222	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATWNL-09A-01R SJALL015693_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	38.9	SJALL015693_D1_RNASEQ_1	SRX1571594		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATWNL-09A-01R SJALL015693_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATWNL-09A-01R.fastq	SRR3162376	@dbgap@:reads/SRP011999/SRS1284222/SRX1571594/SRR3162376/SRR3162376.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATWNL-09A-01R.expression.txt	3			
TARGET-10-PATWNL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWNL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATWNL-09A-01R	RNA	EFO	SRS1284222	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATWNL-09A-01R SJALL015693_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	38.9	SJALL015693_D1_RNASEQ_1	SRX1571594		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATWNL-09A-01R SJALL015693_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATWNL-09A-01R.fastq	SRR3162376	@dbgap@:reads/SRP011999/SRS1284222/SRX1571594/SRR3162376/SRR3162376.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATWXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATWXC-09A-01R	RNA	EFO	SRS1284221	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATWXC-09A-01R SJALL015694_D1-TARGET-10-PATWXC-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	34.9	SJALL015694_D1-TARGET-10-PATWXC-09A-01	SRX1571595		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATWXC-09A-01R SJALL015694_D1-TARGET-10-PATWXC-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATWXC-09A-01R.fastq	SRR3162377	@dbgap@:reads/SRP011999/SRS1284221/SRX1571595/SRR3162377/SRR3162377.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATWXC-09A-01R.expression.txt	3			
TARGET-10-PATWXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATWXC-09A-01R	RNA	EFO	SRS1284221	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATWXC-09A-01R SJALL015694_D1-TARGET-10-PATWXC-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	34.9	SJALL015694_D1-TARGET-10-PATWXC-09A-01	SRX1571595		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATWXC-09A-01R SJALL015694_D1-TARGET-10-PATWXC-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATWXC-09A-01R.fastq	SRR3162377	@dbgap@:reads/SRP011999/SRS1284221/SRX1571595/SRR3162377/SRR3162377.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATWYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATWYL-09A-01R	RNA	EFO	SRS1284220	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATWYL-09A-01R SJTALL002124_D1-TARGET-10-PATWYL-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	37.4	SJTALL002124_D1-TARGET-10-PATWYL-09A-01	SRX1571596		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATWYL-09A-01R SJTALL002124_D1-TARGET-10-PATWYL-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATWYL-09A-01R.fastq	SRR3162378	@dbgap@:reads/SRP011999/SRS1284220/SRX1571596/SRR3162378/SRR3162378.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATWYL-09A-01R.expression.txt	3			
TARGET-10-PATWYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATWYL-09A-01R	RNA	EFO	SRS1284220	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATWYL-09A-01R SJTALL002124_D1-TARGET-10-PATWYL-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	37.4	SJTALL002124_D1-TARGET-10-PATWYL-09A-01	SRX1571596		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATWYL-09A-01R SJTALL002124_D1-TARGET-10-PATWYL-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATWYL-09A-01R.fastq	SRR3162378	@dbgap@:reads/SRP011999/SRS1284220/SRX1571596/SRR3162378/SRR3162378.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATWYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATWYZ-09A-01R	RNA	EFO	SRS1284219	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATWYZ-09A-01R SJALL015695_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	35.2	SJALL015695_D1_RNASEQ_1	SRX1571597		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATWYZ-09A-01R SJALL015695_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATWYZ-09A-01R.fastq	SRR3162379	@dbgap@:reads/SRP011999/SRS1284219/SRX1571597/SRR3162379/SRR3162379.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATWYZ-09A-01R.expression.txt	3			
TARGET-10-PATWYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATWYZ-09A-01R	RNA	EFO	SRS1284219	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATWYZ-09A-01R SJALL015695_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	35.2	SJALL015695_D1_RNASEQ_1	SRX1571597		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATWYZ-09A-01R SJALL015695_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATWYZ-09A-01R.fastq	SRR3162379	@dbgap@:reads/SRP011999/SRS1284219/SRX1571597/SRR3162379/SRR3162379.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATXAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATXAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATXAL-09A-01R	RNA	EFO	SRS1284218	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATXAL-09A-01R SJTALL022447_D2_TRANSCRIPTOME_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	35.9	SJTALL022447_D2_TRANSCRIPTOME_1	SRX1571598		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATXAL-09A-01R SJTALL022447_D2_TRANSCRIPTOME_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATXAL-09A-01R.fastq	SRR3162380	@dbgap@:reads/SRP011999/SRS1284218/SRX1571598/SRR3162380/SRR3162380.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATXAL-09A-01R.expression.txt	3			
TARGET-10-PATXAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATXAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATXAL-09A-01R	RNA	EFO	SRS1284218	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATXAL-09A-01R SJTALL022447_D2_TRANSCRIPTOME_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	35.9	SJTALL022447_D2_TRANSCRIPTOME_1	SRX1571598		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATXAL-09A-01R SJTALL022447_D2_TRANSCRIPTOME_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATXAL-09A-01R.fastq	SRR3162380	@dbgap@:reads/SRP011999/SRS1284218/SRX1571598/SRR3162380/SRR3162380.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATXKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATXKW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATXKW-03A-01R	RNA	EFO	SRS1284217	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATXKW-03A-01R SJTALL022649_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	38.5	SJTALL022649_D2_RNASEQ_1	SRX1571599		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATXKW-03A-01R SJTALL022649_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATXKW-03A-01R.fastq	SRR3162381	@dbgap@:reads/SRP011999/SRS1284217/SRX1571599/SRR3162381/SRR3162381.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATXKW-03A-01R.expression.txt	3			
TARGET-10-PATXKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATXKW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATXKW-03A-01R	RNA	EFO	SRS1284217	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATXKW-03A-01R SJTALL022649_D2_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	167	38.5	SJTALL022649_D2_RNASEQ_1	SRX1571599		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATXKW-03A-01R SJTALL022649_D2_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATXKW-03A-01R.fastq	SRR3162381	@dbgap@:reads/SRP011999/SRS1284217/SRX1571599/SRR3162381/SRR3162381.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATXNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATXNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATXNK-09A-01R	RNA	EFO	SRS1284216	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATXNK-09A-01R SJALL015696_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	38.6	SJALL015696_D1_RNASEQ_1	SRX1571600		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATXNK-09A-01R SJALL015696_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATXNK-09A-01R.fastq	SRR3162382	@dbgap@:reads/SRP011999/SRS1284216/SRX1571600/SRR3162382/SRR3162382.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATXNK-09A-01R.expression.txt	3			
TARGET-10-PATXNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATXNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATXNK-09A-01R	RNA	EFO	SRS1284216	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATXNK-09A-01R SJALL015696_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	38.6	SJALL015696_D1_RNASEQ_1	SRX1571600		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATXNK-09A-01R SJALL015696_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATXNK-09A-01R.fastq	SRR3162382	@dbgap@:reads/SRP011999/SRS1284216/SRX1571600/SRR3162382/SRR3162382.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATXNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATXNR-09A-01R	RNA	EFO	SRS1284215	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATXNR-09A-01R SJALL015697_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	41.2	SJALL015697_D1_RNASEQ_1	SRX1571601		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATXNR-09A-01R SJALL015697_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATXNR-09A-01R.fastq	SRR3162383	@dbgap@:reads/SRP011999/SRS1284215/SRX1571601/SRR3162383/SRR3162383.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATXNR-09A-01R.expression.txt	3			
TARGET-10-PATXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATXNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATXNR-09A-01R	RNA	EFO	SRS1284215	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATXNR-09A-01R SJALL015697_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	41.2	SJALL015697_D1_RNASEQ_1	SRX1571601		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATXNR-09A-01R SJALL015697_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATXNR-09A-01R.fastq	SRR3162383	@dbgap@:reads/SRP011999/SRS1284215/SRX1571601/SRR3162383/SRR3162383.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATXSK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATXSK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATXSK-09A-01R	RNA	EFO	SRS1284214	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATXSK-09A-01R SJALL015698_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	171	41.1	SJALL015698_D1_RNASEQ_1	SRX1571602		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATXSK-09A-01R SJALL015698_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATXSK-09A-01R.fastq	SRR3162384	@dbgap@:reads/SRP011999/SRS1284214/SRX1571602/SRR3162384/SRR3162384.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATXSK-09A-01R.expression.txt	3			
TARGET-10-PATXSK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATXSK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATXSK-09A-01R	RNA	EFO	SRS1284214	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATXSK-09A-01R SJALL015698_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	171	41.1	SJALL015698_D1_RNASEQ_1	SRX1571602		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATXSK-09A-01R SJALL015698_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATXSK-09A-01R.fastq	SRR3162384	@dbgap@:reads/SRP011999/SRS1284214/SRX1571602/SRR3162384/SRR3162384.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATYCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATYCH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATYCH-09A-01R	RNA	EFO	SRS1284213	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATYCH-09A-01R SJTALL002151_D1_TRANSCRIPTOME_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	38.1	SJTALL002151_D1_TRANSCRIPTOME_1	SRX1571603		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATYCH-09A-01R SJTALL002151_D1_TRANSCRIPTOME_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATYCH-09A-01R.fastq	SRR3162314	@dbgap@:reads/SRP011999/SRS1284213/SRX1571603/SRR3162314/SRR3162314.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATYCH-09A-01R.expression.txt	3			
TARGET-10-PATYCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATYCH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATYCH-09A-01R	RNA	EFO	SRS1284213	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATYCH-09A-01R SJTALL002151_D1_TRANSCRIPTOME_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	166	38.1	SJTALL002151_D1_TRANSCRIPTOME_1	SRX1571603		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATYCH-09A-01R SJTALL002151_D1_TRANSCRIPTOME_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATYCH-09A-01R.fastq	SRR3162314	@dbgap@:reads/SRP011999/SRS1284213/SRX1571603/SRR3162314/SRR3162314.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATYJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATYJK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATYJK-09A-01R	RNA	EFO	SRS1284212	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATYJK-09A-01R SJALL016445_D1-TARGET-10-PATYJK-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	39.5	SJALL016445_D1-TARGET-10-PATYJK-09A-01	SRX1571604		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATYJK-09A-01R SJALL016445_D1-TARGET-10-PATYJK-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATYJK-09A-01R.fastq	SRR3162385	@dbgap@:reads/SRP011999/SRS1284212/SRX1571604/SRR3162385/SRR3162385.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATYJK-09A-01R.expression.txt	3			
TARGET-10-PATYJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATYJK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATYJK-09A-01R	RNA	EFO	SRS1284212	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATYJK-09A-01R SJALL016445_D1-TARGET-10-PATYJK-09A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	39.5	SJALL016445_D1-TARGET-10-PATYJK-09A-01	SRX1571604		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATYJK-09A-01R SJALL016445_D1-TARGET-10-PATYJK-09A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATYJK-09A-01R.fastq	SRR3162385	@dbgap@:reads/SRP011999/SRS1284212/SRX1571604/SRR3162385/SRR3162385.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATYMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATYMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATYMP-09A-01R	RNA	EFO	SRS1284211	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATYMP-09A-01R SJALL015699_D1_TRANSCRIPTOME_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	35.8	SJALL015699_D1_TRANSCRIPTOME_1	SRX1571605		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATYMP-09A-01R SJALL015699_D1_TRANSCRIPTOME_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATYMP-09A-01R.fastq	SRR3162386	@dbgap@:reads/SRP011999/SRS1284211/SRX1571605/SRR3162386/SRR3162386.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATYMP-09A-01R.expression.txt	3			
TARGET-10-PATYMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATYMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATYMP-09A-01R	RNA	EFO	SRS1284211	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATYMP-09A-01R SJALL015699_D1_TRANSCRIPTOME_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	35.8	SJALL015699_D1_TRANSCRIPTOME_1	SRX1571605		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATYMP-09A-01R SJALL015699_D1_TRANSCRIPTOME_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATYMP-09A-01R.fastq	SRR3162386	@dbgap@:reads/SRP011999/SRS1284211/SRX1571605/SRR3162386/SRR3162386.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATYWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATYWV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATYWV-09A-01R	RNA	EFO	SRS1284210	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATYWV-09A-01R SJALL015700_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	38.1	SJALL015700_D1_RNASEQ_1	SRX1571606		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATYWV-09A-01R SJALL015700_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATYWV-09A-01R.fastq	SRR3162387	@dbgap@:reads/SRP011999/SRS1284210/SRX1571606/SRR3162387/SRR3162387.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATYWV-09A-01R.expression.txt	3			
TARGET-10-PATYWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATYWV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATYWV-09A-01R	RNA	EFO	SRS1284210	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATYWV-09A-01R SJALL015700_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	38.1	SJALL015700_D1_RNASEQ_1	SRX1571606		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATYWV-09A-01R SJALL015700_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATYWV-09A-01R.fastq	SRR3162387	@dbgap@:reads/SRP011999/SRS1284210/SRX1571606/SRR3162387/SRR3162387.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATZFF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATZFF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATZFF-09A-01R	RNA	EFO	SRS1284209	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATZFF-09A-01R SJALL015701_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	37.5	SJALL015701_D1_RNASEQ_1	SRX1571607		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATZFF-09A-01R SJALL015701_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATZFF-09A-01R.fastq	SRR3162388	@dbgap@:reads/SRP011999/SRS1284209/SRX1571607/SRR3162388/SRR3162388.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATZFF-09A-01R.expression.txt	3			
TARGET-10-PATZFF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATZFF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATZFF-09A-01R	RNA	EFO	SRS1284209	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATZFF-09A-01R SJALL015701_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	37.5	SJALL015701_D1_RNASEQ_1	SRX1571607		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATZFF-09A-01R SJALL015701_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATZFF-09A-01R.fastq	SRR3162388	@dbgap@:reads/SRP011999/SRS1284209/SRX1571607/SRR3162388/SRR3162388.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATZSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATZSL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATZSL-09A-01R	RNA	EFO	SRS1284208	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATZSL-09A-01R SJALL015702_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	37.2	SJALL015702_D1_RNASEQ_1	SRX1571608		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATZSL-09A-01R SJALL015702_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATZSL-09A-01R.fastq	SRR3162389	@dbgap@:reads/SRP011999/SRS1284208/SRX1571608/SRR3162389/SRR3162389.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATZSL-09A-01R.expression.txt	3			
TARGET-10-PATZSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATZSL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATZSL-09A-01R	RNA	EFO	SRS1284208	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATZSL-09A-01R SJALL015702_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	37.2	SJALL015702_D1_RNASEQ_1	SRX1571608		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATZSL-09A-01R SJALL015702_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATZSL-09A-01R.fastq	SRR3162389	@dbgap@:reads/SRP011999/SRS1284208/SRX1571608/SRR3162389/SRR3162389.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATZVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATZVD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATZVD-09A-01R	RNA	EFO	SRS1284207	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATZVD-09A-01R SJTALL002125_D1_TRANSCRIPTOME_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	35.8	SJTALL002125_D1_TRANSCRIPTOME_1	SRX1571609		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATZVD-09A-01R SJTALL002125_D1_TRANSCRIPTOME_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATZVD-09A-01R.fastq	SRR3162390	@dbgap@:reads/SRP011999/SRS1284207/SRX1571609/SRR3162390/SRR3162390.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATZVD-09A-01R.expression.txt	3			
TARGET-10-PATZVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATZVD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATZVD-09A-01R	RNA	EFO	SRS1284207	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATZVD-09A-01R SJTALL002125_D1_TRANSCRIPTOME_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	35.8	SJTALL002125_D1_TRANSCRIPTOME_1	SRX1571609		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATZVD-09A-01R SJTALL002125_D1_TRANSCRIPTOME_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATZVD-09A-01R.fastq	SRR3162390	@dbgap@:reads/SRP011999/SRS1284207/SRX1571609/SRR3162390/SRR3162390.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATZWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATZWA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATZWA-03A-01R	RNA	EFO	SRS1284206	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATZWA-03A-01R SJALL015703_D1-TARGET-10-PATZWA-03A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	39	SJALL015703_D1-TARGET-10-PATZWA-03A-01	SRX1571610		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATZWA-03A-01R SJALL015703_D1-TARGET-10-PATZWA-03A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATZWA-03A-01R.fastq	SRR3162391	@dbgap@:reads/SRP011999/SRS1284206/SRX1571610/SRR3162391/SRR3162391.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATZWA-03A-01R.expression.txt	3			
TARGET-10-PATZWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATZWA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATZWA-03A-01R	RNA	EFO	SRS1284206	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATZWA-03A-01R SJALL015703_D1-TARGET-10-PATZWA-03A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	39	SJALL015703_D1-TARGET-10-PATZWA-03A-01	SRX1571610		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATZWA-03A-01R SJALL015703_D1-TARGET-10-PATZWA-03A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATZWA-03A-01R.fastq	SRR3162391	@dbgap@:reads/SRP011999/SRS1284206/SRX1571610/SRR3162391/SRR3162391.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATZYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATZYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATZYC-09A-01R	RNA	EFO	SRS1284205	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATZYC-09A-01R SJALL015704_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	35.3	SJALL015704_D1_RNASEQ_1	SRX1571611		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATZYC-09A-01R SJALL015704_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATZYC-09A-01R.fastq	SRR3162392	@dbgap@:reads/SRP011999/SRS1284205/SRX1571611/SRR3162392/SRR3162392.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATZYC-09A-01R.expression.txt	3			
TARGET-10-PATZYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATZYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATZYC-09A-01R	RNA	EFO	SRS1284205	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATZYC-09A-01R SJALL015704_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	35.3	SJALL015704_D1_RNASEQ_1	SRX1571611		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATZYC-09A-01R SJALL015704_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATZYC-09A-01R.fastq	SRR3162392	@dbgap@:reads/SRP011999/SRS1284205/SRX1571611/SRR3162392/SRR3162392.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PATZYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATZYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATZYR-03A-01R	RNA	EFO	SRS1284204	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATZYR-03A-01R SJALL015705_D1-TARGET-10-PATZYR-03A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	171	40.7	SJALL015705_D1-TARGET-10-PATZYR-03A-01	SRX1571612		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATZYR-03A-01R SJALL015705_D1-TARGET-10-PATZYR-03A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATZYR-03A-01R.fastq	SRR3162393	@dbgap@:reads/SRP011999/SRS1284204/SRX1571612/SRR3162393/SRR3162393.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PATZYR-03A-01R.expression.txt	3			
TARGET-10-PATZYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATZYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PATZYR-03A-01R	RNA	EFO	SRS1284204	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PATZYR-03A-01R SJALL015705_D1-TARGET-10-PATZYR-03A-01 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	171	40.7	SJALL015705_D1-TARGET-10-PATZYR-03A-01	SRX1571612		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PATZYR-03A-01R SJALL015705_D1-TARGET-10-PATZYR-03A-01 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PATZYR-03A-01R.fastq	SRR3162393	@dbgap@:reads/SRP011999/SRS1284204/SRX1571612/SRR3162393/SRR3162393.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PAUACG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUACG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUACG-09A-01R	RNA	EFO	SRS1284203	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUACG-09A-01R SJTALL002140_D1_TRANSCRIPTOME_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	36.1	SJTALL002140_D1_TRANSCRIPTOME_1	SRX1571613		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUACG-09A-01R SJTALL002140_D1_TRANSCRIPTOME_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUACG-09A-01R.fastq	SRR3162315	@dbgap@:reads/SRP011999/SRS1284203/SRX1571613/SRR3162315/SRR3162315.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PAUACG-09A-01R.expression.txt	3			
TARGET-10-PAUACG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUACG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUACG-09A-01R	RNA	EFO	SRS1284203	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUACG-09A-01R SJTALL002140_D1_TRANSCRIPTOME_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	164	36.1	SJTALL002140_D1_TRANSCRIPTOME_1	SRX1571613		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUACG-09A-01R SJTALL002140_D1_TRANSCRIPTOME_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUACG-09A-01R.fastq	SRR3162315	@dbgap@:reads/SRP011999/SRS1284203/SRX1571613/SRR3162315/SRR3162315.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PAUAFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUAFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUAFN-09A-01R	RNA	EFO	SRS1284202	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUAFN-09A-01R SJALL015706_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	36	SJALL015706_D1_RNASEQ_1	SRX1571614		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUAFN-09A-01R SJALL015706_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUAFN-09A-01R.fastq	SRR3162316	@dbgap@:reads/SRP011999/SRS1284202/SRX1571614/SRR3162316/SRR3162316.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PAUAFN-09A-01R.expression.txt	3			
TARGET-10-PAUAFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUAFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUAFN-09A-01R	RNA	EFO	SRS1284202	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUAFN-09A-01R SJALL015706_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	36	SJALL015706_D1_RNASEQ_1	SRX1571614		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUAFN-09A-01R SJALL015706_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUAFN-09A-01R.fastq	SRR3162316	@dbgap@:reads/SRP011999/SRS1284202/SRX1571614/SRR3162316/SRR3162316.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PAUAJA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUAJA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUAJA-09A-01R	RNA	EFO	SRS1284201	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUAJA-09A-01R SJALL015707_D1_TRANSCRIPTOME_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	35.5	SJALL015707_D1_TRANSCRIPTOME_1	SRX1571615		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUAJA-09A-01R SJALL015707_D1_TRANSCRIPTOME_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUAJA-09A-01R.fastq	SRR3162317	@dbgap@:reads/SRP011999/SRS1284201/SRX1571615/SRR3162317/SRR3162317.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PAUAJA-09A-01R.expression.txt	3			
TARGET-10-PAUAJA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUAJA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUAJA-09A-01R	RNA	EFO	SRS1284201	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUAJA-09A-01R SJALL015707_D1_TRANSCRIPTOME_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	161	35.5	SJALL015707_D1_TRANSCRIPTOME_1	SRX1571615		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUAJA-09A-01R SJALL015707_D1_TRANSCRIPTOME_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUAJA-09A-01R.fastq	SRR3162317	@dbgap@:reads/SRP011999/SRS1284201/SRX1571615/SRR3162317/SRR3162317.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PAUAYB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUAYB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUAYB-09A-01R	RNA	EFO	SRS1284200	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUAYB-09A-01R SJALL016446_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	171	39.5	SJALL016446_D1_RNASEQ_1	SRX1571616		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUAYB-09A-01R SJALL016446_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUAYB-09A-01R.fastq	SRR3162318	@dbgap@:reads/SRP011999/SRS1284200/SRX1571616/SRR3162318/SRR3162318.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PAUAYB-09A-01R.expression.txt	3			
TARGET-10-PAUAYB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUAYB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUAYB-09A-01R	RNA	EFO	SRS1284200	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUAYB-09A-01R SJALL016446_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	171	39.5	SJALL016446_D1_RNASEQ_1	SRX1571616		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUAYB-09A-01R SJALL016446_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUAYB-09A-01R.fastq	SRR3162318	@dbgap@:reads/SRP011999/SRS1284200/SRX1571616/SRR3162318/SRR3162318.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PAUAZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUAZV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUAZV-09A-01R	RNA	EFO	SRS1284199	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUAZV-09A-01R SJALL015708_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	40.4	SJALL015708_D1_RNASEQ_1	SRX1571617		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUAZV-09A-01R SJALL015708_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUAZV-09A-01R.fastq	SRR3162319	@dbgap@:reads/SRP011999/SRS1284199/SRX1571617/SRR3162319/SRR3162319.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PAUAZV-09A-01R.expression.txt	3			
TARGET-10-PAUAZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUAZV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUAZV-09A-01R	RNA	EFO	SRS1284199	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUAZV-09A-01R SJALL015708_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	40.4	SJALL015708_D1_RNASEQ_1	SRX1571617		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUAZV-09A-01R SJALL015708_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUAZV-09A-01R.fastq	SRR3162319	@dbgap@:reads/SRP011999/SRS1284199/SRX1571617/SRR3162319/SRR3162319.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PAUBCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBCB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUBCB-09A-01R	RNA	EFO	SRS1284198	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUBCB-09A-01R SJALL015709_D1_TRANSCRIPTOME_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	36	SJALL015709_D1_TRANSCRIPTOME_1	SRX1571618		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUBCB-09A-01R SJALL015709_D1_TRANSCRIPTOME_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUBCB-09A-01R.fastq	SRR3162320	@dbgap@:reads/SRP011999/SRS1284198/SRX1571618/SRR3162320/SRR3162320.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PAUBCB-09A-01R.expression.txt	3			
TARGET-10-PAUBCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBCB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUBCB-09A-01R	RNA	EFO	SRS1284198	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUBCB-09A-01R SJALL015709_D1_TRANSCRIPTOME_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	36	SJALL015709_D1_TRANSCRIPTOME_1	SRX1571618		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUBCB-09A-01R SJALL015709_D1_TRANSCRIPTOME_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUBCB-09A-01R.fastq	SRR3162320	@dbgap@:reads/SRP011999/SRS1284198/SRX1571618/SRR3162320/SRR3162320.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PAUBCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBCT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUBCT-09A-01R	RNA	EFO	SRS1284197	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUBCT-09A-01R SJALL015710_D1_TRANSCRIPTOME_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	36.9	SJALL015710_D1_TRANSCRIPTOME_1	SRX1571619		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUBCT-09A-01R SJALL015710_D1_TRANSCRIPTOME_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUBCT-09A-01R.fastq	SRR3162321	@dbgap@:reads/SRP011999/SRS1284197/SRX1571619/SRR3162321/SRR3162321.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PAUBCT-09A-01R.expression.txt	3			
TARGET-10-PAUBCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBCT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUBCT-09A-01R	RNA	EFO	SRS1284197	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUBCT-09A-01R SJALL015710_D1_TRANSCRIPTOME_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	36.9	SJALL015710_D1_TRANSCRIPTOME_1	SRX1571619		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUBCT-09A-01R SJALL015710_D1_TRANSCRIPTOME_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUBCT-09A-01R.fastq	SRR3162321	@dbgap@:reads/SRP011999/SRS1284197/SRX1571619/SRR3162321/SRR3162321.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PAUBLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBLL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUBLL-09A-01R	RNA	EFO	SRS1284196	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUBLL-09A-01R SJALL015711_D1_TRANSCRIPTOME_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	36.1	SJALL015711_D1_TRANSCRIPTOME_1	SRX1571620		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUBLL-09A-01R SJALL015711_D1_TRANSCRIPTOME_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUBLL-09A-01R.fastq	SRR3162322	@dbgap@:reads/SRP011999/SRS1284196/SRX1571620/SRR3162322/SRR3162322.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PAUBLL-09A-01R.expression.txt	3			
TARGET-10-PAUBLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBLL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUBLL-09A-01R	RNA	EFO	SRS1284196	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUBLL-09A-01R SJALL015711_D1_TRANSCRIPTOME_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	162	36.1	SJALL015711_D1_TRANSCRIPTOME_1	SRX1571620		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUBLL-09A-01R SJALL015711_D1_TRANSCRIPTOME_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUBLL-09A-01R.fastq	SRR3162322	@dbgap@:reads/SRP011999/SRS1284196/SRX1571620/SRR3162322/SRR3162322.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PAUBPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBPY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUBPY-09A-01R	RNA	EFO	SRS1284195	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUBPY-09A-01R SJALL015712_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	176	43.5	SJALL015712_D1_RNASEQ_1	SRX1571621		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUBPY-09A-01R SJALL015712_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUBPY-09A-01R.fastq	SRR3162323	@dbgap@:reads/SRP011999/SRS1284195/SRX1571621/SRR3162323/SRR3162323.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PAUBPY-09A-01R.expression.txt	3			
TARGET-10-PAUBPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBPY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUBPY-09A-01R	RNA	EFO	SRS1284195	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUBPY-09A-01R SJALL015712_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	176	43.5	SJALL015712_D1_RNASEQ_1	SRX1571621		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUBPY-09A-01R SJALL015712_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUBPY-09A-01R.fastq	SRR3162323	@dbgap@:reads/SRP011999/SRS1284195/SRX1571621/SRR3162323/SRR3162323.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PAUBRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBRD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUBRD-09A-01R	RNA	EFO	SRS1284194	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUBRD-09A-01R SJTALL002126_D1_TRANSCRIPTOME_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	35.7	SJTALL002126_D1_TRANSCRIPTOME_1	SRX1571622		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUBRD-09A-01R SJTALL002126_D1_TRANSCRIPTOME_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUBRD-09A-01R.fastq	SRR3162324	@dbgap@:reads/SRP011999/SRS1284194/SRX1571622/SRR3162324/SRR3162324.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PAUBRD-09A-01R.expression.txt	3			
TARGET-10-PAUBRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBRD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUBRD-09A-01R	RNA	EFO	SRS1284194	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUBRD-09A-01R SJTALL002126_D1_TRANSCRIPTOME_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	165	35.7	SJTALL002126_D1_TRANSCRIPTOME_1	SRX1571622		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUBRD-09A-01R SJTALL002126_D1_TRANSCRIPTOME_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUBRD-09A-01R.fastq	SRR3162324	@dbgap@:reads/SRP011999/SRS1284194/SRX1571622/SRR3162324/SRR3162324.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PAUBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBTC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUBTC-09A-01R	RNA	EFO	SRS1284193	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUBTC-09A-01R SJTALL002130_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	38	SJTALL002130_D1_RNASEQ_1	SRX1571623		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUBTC-09A-01R SJTALL002130_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUBTC-09A-01R.fastq	SRR3162325	@dbgap@:reads/SRP011999/SRS1284193/SRX1571623/SRR3162325/SRR3162325.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PAUBTC-09A-01R.expression.txt	3			
TARGET-10-PAUBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBTC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUBTC-09A-01R	RNA	EFO	SRS1284193	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUBTC-09A-01R SJTALL002130_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	168	38	SJTALL002130_D1_RNASEQ_1	SRX1571623		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUBTC-09A-01R SJTALL002130_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUBTC-09A-01R.fastq	SRR3162325	@dbgap@:reads/SRP011999/SRS1284193/SRX1571623/SRR3162325/SRR3162325.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PAUBXP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBXP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUBXP-09A-01R	RNA	EFO	SRS1284192	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUBXP-09A-01R SJALL015713_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	38	SJALL015713_D1_RNASEQ_1	SRX1571624		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUBXP-09A-01R SJALL015713_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUBXP-09A-01R.fastq	SRR3162336	@dbgap@:reads/SRP011999/SRS1284192/SRX1571624/SRR3162336/SRR3162336.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PAUBXP-09A-01R.expression.txt	3			
TARGET-10-PAUBXP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBXP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUBXP-09A-01R	RNA	EFO	SRS1284192	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUBXP-09A-01R SJALL015713_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	170	38	SJALL015713_D1_RNASEQ_1	SRX1571624		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUBXP-09A-01R SJALL015713_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUBXP-09A-01R.fastq	SRR3162336	@dbgap@:reads/SRP011999/SRS1284192/SRX1571624/SRR3162336/SRR3162336.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PAUCDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUCDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUCDC-09A-01R	RNA	EFO	SRS1284191	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUCDC-09A-01R SJALL015714_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	34.9	SJALL015714_D1_RNASEQ_1	SRX1571625		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUCDC-09A-01R SJALL015714_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUCDC-09A-01R.fastq	SRR3162337	@dbgap@:reads/SRP011999/SRS1284191/SRX1571625/SRR3162337/SRR3162337.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PAUCDC-09A-01R.expression.txt	3			
TARGET-10-PAUCDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUCDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUCDC-09A-01R	RNA	EFO	SRS1284191	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUCDC-09A-01R SJALL015714_D1_RNASEQ_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	163	34.9	SJALL015714_D1_RNASEQ_1	SRX1571625		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUCDC-09A-01R SJALL015714_D1_RNASEQ_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUCDC-09A-01R.fastq	SRR3162337	@dbgap@:reads/SRP011999/SRS1284191/SRX1571625/SRR3162337/SRR3162337.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
TARGET-10-PAUCDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUCDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUCDY-09A-01R	RNA	EFO	SRS1284190	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUCDY-09A-01R SJTALL002141_D1_TRANSCRIPTOME_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	159	34.3	SJTALL002141_D1_TRANSCRIPTOME_1	SRX1571626		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUCDY-09A-01R SJTALL002141_D1_TRANSCRIPTOME_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUCDY-09A-01R.fastq	SRR3162338	@dbgap@:reads/SRP011999/SRS1284190/SRX1571626/SRR3162338/SRR3162338.sra	1								stjude.org:Protocol:mRNAseq-Expression-HTSeq:01		TARGET-10-PAUCDY-09A-01R.expression.txt	3			
TARGET-10-PAUCDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUCDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:RNA-Extraction-TRIzol:01	St Jude Children's Research Hospital	TARGET-10-PAUCDY-09A-01R	RNA	EFO	SRS1284190	stjude.org:Protocol:mRNAseq-LibraryPrep-Illumina-StrandSpecific:01	St Jude Children's Research Hospital	TARGET-10-PAUCDY-09A-01R SJTALL002141_D1_TRANSCRIPTOME_1 library	PAIRED	TRANSCRIPTOMIC	RNA-Seq	cDNA	159	34.3	SJTALL002141_D1_TRANSCRIPTOME_1	SRX1571626		stjude.org:Protocol:mRNAseq-Sequence-Illumina-HiSeq2000:01	StJude		TARGET-10-PAUCDY-09A-01R SJTALL002141_D1_TRANSCRIPTOME_1 run	sequencing assay	EFO	202	stjude.org:Protocol:mRNAseq-BaseCall-Illumina:01	CASAVA 1.8	TARGET-10-PAUCDY-09A-01R.fastq	SRR3162338	@dbgap@:reads/SRP011999/SRS1284190/SRX1571626/SRR3162338/SRR3162338.sra	1								stjude.org:Protocol:mRNAseq-Fusion-StrongArm-CICERO:01		TARGET_TALL_mRNA-seq_sv.tsv	3			
