Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	1	61735	25595881	14155	-3e-04
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	1	25595947	25618931	14	0.7187
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	1	25619040	72768916	28866	0.0079
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	1	72768936	72811148	45	-0.9571
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	1	72811904	104159384	20082	0.0058
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	1	104163499	104225568	14	-0.7283
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	1	104239689	106013376	933	0.0137
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	1	106019205	106024055	18	0.5187
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	1	106024070	110232974	2671	0.0033
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	1	110233037	110240178	16	-0.9294
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	1	110242953	144593253	7218	0.0104
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	1	144842558	144868360	6	-0.6922
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	1	144869084	148585337	1092	-0.0044
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	1	148627569	148636769	4	-1.3895
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	1	148636891	152555706	1697	-0.0032
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	1	152555767	152586594	34	0.2751
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	1	152590494	152759678	170	0.0358
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	1	152761923	152768281	33	-0.3136
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	1	152768338	174796266	14873	0.0042
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	1	174796405	174801840	17	-0.6791
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	1	174801854	196709760	14651	0.0085
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	1	196711067	196823317	102	0.2826
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	1	196823613	248725234	35743	0.0079
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	1	248736075	248805339	36	-0.5255
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	1	248808557	249224388	144	0.0348
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	2	12784	34520473	23990	0.0065
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	2	34523978	34525580	2	-2.0314
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	2	34525967	34652579	83	0.0161
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	2	34652871	34737057	58	0.5375
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	2	34737163	98118212	37147	0.0043
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	2	98140747	98162189	9	-0.9501
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	2	98166878	117588586	11377	0.0058
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	2	117589767	117589853	2	-1.8607
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	2	117591245	129638078	7652	0.0047
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	2	129638478	129640297	14	-2.0582
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	2	129640315	133401746	1888	-0.0022
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	2	133401976	133402224	2	-1.1911
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	2	133404586	136462831	2033	0.0038
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	2	136464818	136465142	3	-1.7963
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	2	136465856	219938004	50967	0.0053
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	2	219938588	220280974	178	0.4995
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	2	220282170	227342038	4757	0.0077
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	2	227342788	227346068	5	-1.2195
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	2	227347799	238190533	7013	2e-04
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	2	238192552	238192670	2	-1.655
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	2	238194122	243089456	2788	0.0159
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	3	60345	6646543	5838	0.012
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	3	6651128	6653332	23	-0.6128
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	3	6655078	162714517	97179	0.0061
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	3	162717727	162719562	2	-2.688
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	3	162726159	195390680	20622	0.0092
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	3	195399075	195474763	45	0.3974
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	3	195478694	197838578	1153	0.0133
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	3	197845216	197849705	11	-0.5181
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	3	197851225	197896118	9	0.0695
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	12281	59072	50	-0.2363
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	61775	3110895	1206	-0.0018
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	3113569	3114501	3	-1.5234
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	3114730	9456977	3987	0.0028
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	9461230	9509619	15	-0.6776
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	9509887	9859897	158	-0.0271
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	9859901	9864227	3	-1.036
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	9865042	10390715	584	0.0456
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	10392354	10402718	17	0.4724
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	10402746	34779054	16800	0.005
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	34786500	34824725	38	0.4694
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	34829872	49267848	8984	0.0082
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	49291192	49291355	2	-1.5538
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	49297220	58811798	4200	0.0012
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	58812378	58816810	8	-0.8461
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	58829546	61936938	1887	0.004
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	61940935	61941952	2	-1.3015
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	61945686	64131169	1188	-2e-04
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	64131238	64154567	8	-0.6506
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	64154838	66989877	1838	0.0086
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	66992238	66995900	3	-0.8824
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	66997556	69360489	1376	0.0059
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	69367142	69505115	69	0.3902
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	69506334	130062751	36493	0.0054
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	130067546	130068160	2	-2.0931
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	130072563	138092239	4517	0.0101
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	138092420	138095121	17	-0.5603
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	138108363	161946759	14835	0.0072
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	161952228	162003266	43	0.5289
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	162006824	172369346	6574	0.0064
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	172374884	172377710	10	1.1981
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	4	172377724	191027923	12524	0.0033
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	5	15532	32101400	22361	0.0086
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	5	32102731	32172493	45	0.7343
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	5	32177784	57321646	13477	0.0021
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	5	57326027	57333533	32	1.201
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	5	57338357	180790320	77189	0.0045
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	6	149661	257353	102	-0.0323
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	6	258265	365720	91	0.2074
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	6	366333	6026211	4667	-0.0032
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	6	6033931	6034436	3	-2.6126
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	6	6037045	17101664	8552	0.0066
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	6	17102758	17102858	2	-2.736
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	6	17102997	31286276	9010	0.0096
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	6	31286305	31296451	10	-1.3643
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	6	31309924	53931151	14317	-0.0021
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	6	53931230	53931855	6	1.303
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	6	53935348	67008262	5460	0.0118
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	6	67008286	67049599	58	-0.5447
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	6	67051202	69560086	1773	0.005
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	6	69560139	69560780	5	-0.7096
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	6	69561272	77429695	4999	0.003
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	6	77429730	77452641	21	-0.3748
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	6	77452673	78227120	511	0.0191
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	6	78227714	78227749	2	-1.0152
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	6	78234301	78971712	473	-0.0144
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	6	78971781	79035185	109	-0.5208
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	6	79039234	165298816	55800	0.0049
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	6	165299302	165309456	2	-1.5583
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	6	165309528	171051005	3944	0.0081
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	7	43355	8998665	5250	0
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	7	8998850	9001776	5	-0.9908
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	7	9001963	38322918	22181	0.0087
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	7	38323485	38332164	43	-0.2953
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	7	38332294	54380373	11070	0.0047
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	7	54386505	54386517	6	-1.4471
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	7	54393488	62156637	2198	-0.0042
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	7	62156731	62162274	9	-0.7004
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	7	62181110	64568852	932	-0.0114
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	7	64594065	64595698	6	0.9728
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	7	64637128	109433777	25660	0.0056
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	7	109433785	109453910	37	-0.281
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	7	109453982	115582082	3643	0.008
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	7	115583457	115586294	5	-0.8862
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	7	115586434	126044974	6385	0.0052
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	7	126045482	126046876	13	0.8846
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	7	126046877	133785177	4706	0.0063
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	7	133785195	133798053	29	0.372
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	7	133798067	141763124	5203	0.0074
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	7	141769643	141787899	34	0.3716
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	7	141787973	159127004	11057	-0.0015
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	8	31254	594973	329	0.017
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	8	595220	595875	6	0.6374
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	8	595892	595908	2	3.1637
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	8	601043	5598735	5757	0.0135
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	8	5598764	5604495	25	-0.6049
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	8	5607088	7238019	1733	0.0015
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	8	7250380	7787685	141	-0.4531
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	8	7787714	7990294	58	-0.137
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	8	7997031	8017932	11	-0.5382
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	8	8018036	12233754	3250	0.0111
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	8	12234217	12507071	110	-0.2952
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	8	12528428	13603476	1045	0.0017
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	8	13609668	13609690	2	1.1216
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	8	13609764	14509568	902	0.0111
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	8	14510032	14510074	3	-1.1673
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	8	14510396	144705157	82037	0.0075
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	8	144705197	144707021	7	-1.5035
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	8	144718989	146298155	506	-0.0239
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	9	46587	23361805	20455	0.0082
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	9	23363115	23373484	8	-1.9391
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	9	23378488	41846811	10887	0.009
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	9	41892866	44114872	73	0.3977
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	9	44136790	44446136	46	-0.1788
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	9	44469328	44866028	39	0.4624
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	9	44873200	78002560	5357	0.0125
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	9	78005177	78008161	3	-0.9612
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	9	78012459	90815688	9422	0.0114
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	9	90819763	90820542	4	-0.8245
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	9	90822113	105118621	9464	0.0047
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	9	105122034	105129880	11	0.6315
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	9	105129994	112941881	6026	0.005
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	9	112945405	112945724	2	-1.2943
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	9	112945774	128013234	10931	0.0078
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	9	128025999	128033329	2	1.4085
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	9	128036193	141091394	7167	0.0051
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	10	72759	791623	418	-0.0184
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	10	797490	800177	5	-0.8011
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	10	800213	46256781	31142	0.0047
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	10	46293619	46312487	2	-1.5023
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	10	46485761	48771950	671	-0.0517
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	10	48837810	48840627	2	2.1061
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	10	48883402	49731201	284	0.0148
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	10	49732975	49732988	2	-1.8953
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	10	49733261	51197138	1089	0.0062
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	10	51231576	51397071	3	1.6951
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	10	51449369	61358267	7088	0.0142
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	10	61364115	61365074	6	-0.8267
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	10	61365182	67306158	4021	0.0063
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	10	67306276	67314430	28	0.3659
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	10	67314446	90938673	15861	0.007
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	10	90942967	90948030	11	-0.7289
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	10	90948090	135506704	30423	0.0055
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	11	198510	3282568	1272	-0.0201
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	11	3286016	3363846	7	0.5889
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	11	3364167	3486724	66	-0.0623
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	11	3487665	3488541	3	-0.9971
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	11	3506526	4250013	439	-0.0143
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	11	4256129	4336529	27	0.4974
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	11	4346809	5787405	1484	0.011
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	11	5788080	5808340	29	-0.677
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	11	5808376	6107790	243	0.0119
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	11	6108269	6122094	8	0.656
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	11	6122503	20843891	10902	0.0038
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	11	20844852	20849758	3	-1.0723
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	11	20850230	24442174	2687	0.0041
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	11	24444249	24450257	6	-0.9895
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	11	24455176	134944770	69917	0.0027
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	12	150442	865970	418	0.0031
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	12	869109	874029	18	-0.663
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	12	875354	8357507	5113	0.0093
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	12	8362050	8378251	11	0.7349
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	12	8393828	30235421	15008	0.0068
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	12	30235581	30241370	16	-0.4434
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	12	30243454	31269298	886	0.0103
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	12	31278031	31410284	92	0.5071
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	12	31410821	37982640	2170	0.0068
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	12	37987726	38014018	3	-1.165
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	12	38034358	70871858	19960	0.0053
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	12	70872675	70877750	5	-0.8176
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	12	70877765	78291366	4765	0
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	12	78291904	78293181	2	-1.2292
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	12	78293483	84163187	3679	0.0026
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	12	84163290	84165241	3	-1.1613
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	12	84165279	99791792	10083	0.0075
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	12	99791814	99798720	31	-0.3925
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	12	99798734	133778189	22759	5e-04
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	13	19026949	115108397	64288	0.0081
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	14	19002124	20420239	187	-0.228
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	14	20422583	70018047	31495	0.0051
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	14	70018368	70018678	2	-1.4901
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	14	70022221	74006707	2630	0.0053
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	14	74006851	74020979	7	-1.4429
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	14	74029900	106526966	20802	0.0066
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	14	106530364	106547314	8	-0.6589
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	14	106547507	106561441	9	-2.174
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	14	106567100	106783044	103	-0.0236
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	14	106796025	106820744	10	-1.7772
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	14	106821736	106889379	34	0.0197
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	14	106890808	106918649	48	0.2388
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	14	106922531	107153173	133	-0.0138
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	14	107160325	107179847	21	-0.3816
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	14	107184184	107285437	69	0.1072
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	15	20016328	20440538	68	-0.039
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	15	20446138	20578421	30	0.5048
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	15	20581451	20581455	5	-0.5076
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	15	20581562	20586912	12	0.0797
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	15	20586942	20627492	29	0.6069
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	15	20646575	20843562	15	-0.0892
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	15	20847933	22681076	265	0.613
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	15	22681250	54194989	19422	0.0081
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	15	54200350	54201360	2	-1.9788
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	15	54204228	76878362	14493	0.0061
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	15	76891241	76895774	21	-1.5378
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	15	76895775	84540717	4432	0.0113
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	15	84540738	84543550	6	-0.6074
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	15	84547277	85811623	597	0.0215
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	15	85811696	86134553	214	0.5371
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	15	86138860	102469040	12431	0.0066
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	16	60777	12648859	9422	-3e-04
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	16	12648978	12648995	2	1.5795
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	16	12650247	19944363	4096	2e-04
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	16	19945650	19965875	28	-0.5874
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	16	19967362	22431370	1293	-0.0067
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	16	22441974	22704520	74	-0.3603
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	16	22710742	32158852	5170	0.0065
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	16	32158862	32180976	6	0.7674
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	16	32208746	32483006	39	-0.0659
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	16	32483550	32588622	22	0.2088
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	16	32588901	32614875	7	0.8951
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	16	32614891	32655239	21	0.2294
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	16	32655295	33241953	54	-0.0292
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	16	33300894	33773972	108	0.2994
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	16	33776085	34459037	191	-0.0162
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	16	34459527	34765093	174	0.4302
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	16	34765216	78371608	21051	0.0059
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	16	78372440	78385001	17	0.8633
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	16	78385437	90287535	10627	0.0011
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	17	526	65431265	35906	0.0046
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	17	65440366	65444493	8	-0.9899
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	17	65444882	81049726	9358	0.0045
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	18	11543	14406969	10141	0.0068
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	18	14407179	14440584	18	-0.4166
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	18	14446236	38260420	12673	0.007
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	18	38260434	38265389	18	0.4855
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	18	38268024	63200466	17128	0.0067
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	18	63200479	63209293	27	0.3893
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	18	63212324	78015057	10792	0.0122
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	19	90910	43697333	20755	-0.0041
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	19	43703033	43753510	21	-0.7148
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	19	43756237	50585888	3317	-0.0097
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	19	50592114	50592124	2	-1.7121
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	19	50592237	56282070	3389	-0.0096
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	19	56282369	56286293	5	0.9938
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	19	56288941	59097854	1847	0.003
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	20	61305	1582207	1242	-0.0121
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	20	1590257	1593893	5	-0.9292
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	20	1597946	62956153	41232	0.0043
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	21	10736871	10953424	36	0.3282
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	21	10954126	48096957	24373	0.0052
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	22	16052528	24330218	4615	-0.0146
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	22	24330269	24337949	6	-0.971
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	22	24344422	24394015	19	0.6775
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	22	24396814	25082115	356	0.0088
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	22	25082515	25082534	2	-1.61
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	22	25087674	51234455	18549	0.0021
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	X	168477	9372167	5147	0.0089
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	X	9375009	9376235	3	-1.3904
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	X	9384230	34042254	16184	0.0089
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	X	34044373	34070287	24	-0.8805
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	X	34073425	74447423	17813	0.0091
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	X	74463003	74654336	96	0.4804
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	X	74661245	76349873	869	-0.0124
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	X	76353650	76523952	17	-0.5946
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	X	76545159	154913205	44385	0.0054
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	X	154915975	154929498	16	-0.5451
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	X	154964055	155182354	18	0.0362
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A01_777758	Y	2650438	59018259	8635	-0.9755
