Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	51598	9767361	4941	0.0022
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	9771895	9775286	2	-2.3316
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	9778175	16679811	3760	0.0082
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	16681281	16840798	48	-0.3428
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	16840961	46282940	16749	0.0051
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	46284862	46286413	2	2.2662
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	46292140	48609924	1404	0.0086
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	48614402	48617199	2	1.8357
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	48618068	72541504	16026	0.0066
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	72541524	72583736	45	-0.6933
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	72584492	75041872	1506	0.0055
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	75043660	75046454	2	1.8512
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	75046575	81661044	4277	0.0093
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	81661190	81661193	2	1.8219
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	81661255	83613577	1330	-0.0073
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	83622946	83622978	2	1.2864
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	83626239	89247843	3863	0.0085
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	89250546	89250793	2	-2.0611
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	89254112	104023054	9107	0.0126
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	104023154	104105162	26	0.6023
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	104108766	110022113	3588	5e-04
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	110022262	110044476	35	-0.4138
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	110046521	120888538	7094	-0.003
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	120888902	120894018	2	1.6344
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	120895123	145709220	1047	-0.0608
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	145710870	145711065	2	2.1654
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	145713527	150794433	1827	-0.0017
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	150796246	150857118	75	-0.8497
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	150857189	151029386	183	9e-04
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	151029514	151035324	23	0.4116
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	151040529	156790295	3314	1e-04
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	156792175	156792259	2	1.6356
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	156793208	173063956	11550	0.0089
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	173064008	173064071	2	1.5982
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	173064128	173684644	415	0.0093
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	173685720	173685824	2	-1.6799
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	173686100	191422415	11840	0.0038
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	191422902	191422955	3	1.7622
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	191422971	192035707	484	0.0139
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	192035944	192106629	57	-0.7625
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	192108682	192119178	4	-0.0877
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	192121603	192167439	43	-0.7676
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	192167689	195152308	1960	0.0254
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	195153332	195182982	12	0.534
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	195183422	196573483	755	0.0043
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	196573555	196574402	2	-2.1723
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	196577982	200833895	2868	-2e-04
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	200834176	200834409	3	1.2371
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	200835165	213558119	8848	0.0068
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	213560092	213562340	3	-2.0877
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	213562762	213927232	158	-0.0169
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	213927856	213928034	2	1.7048
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	213928092	224071185	6893	-0.0021
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	224072721	224074113	2	2.5528
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	1	224074724	247191011	16311	0.0037
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	2	2784	13447304	10177	-0.0024
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	2	13452427	13454841	3	1.8644
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	2	13455187	34536794	13902	0.0073
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	2	34538784	34594303	54	0.5544
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	2	34594531	40844166	4636	0.0148
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	2	40844256	40844942	2	2.0581
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	2	40845310	52607972	8387	0.0043
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	2	52607984	52635046	39	0.6369
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	2	52641453	89573808	22878	0.0012
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	2	89597067	89609986	3	1.879
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	2	89612925	127568491	19191	0.002
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	2	127573516	127574416	3	1.8563
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	2	127575116	129354548	1027	0.0039
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	2	129354948	129356767	14	-0.5928
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	2	129356785	134772954	3154	0.0087
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	2	134773145	134773340	2	2.0366
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	2	134774727	159664004	15129	0.0095
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	2	159664766	159672442	10	0.7598
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	2	159672762	185024921	15902	0.0066
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	2	185025125	185028304	4	1.719
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	2	185033764	242738129	35396	0.0069
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	3	35345	60474128	41262	2e-04
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	3	60475004	60475122	2	-2.0059
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	3	60475589	68828854	6551	0.005
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	3	68828949	68830103	14	0.7213
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	3	68831448	111400880	22525	0.0064
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	3	111401559	111418658	8	-0.836
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	3	111424797	116137241	2915	0.0088
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	3	116137672	116151640	9	-0.9938
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	3	116151708	131245549	9253	0.0078
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	3	131246388	131288926	52	0.4114
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	3	131289614	137501789	4032	-0.0015
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	3	137505641	137508116	2	-1.6095
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	3	137521231	162998291	15562	-0.0037
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	3	162998321	162998343	2	1.7364
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	3	162998638	163699715	477	2e-04
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	3	163701038	163701543	6	1.0298
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	3	163701563	163990962	195	-0.0132
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	3	163995351	164069972	43	-0.5699
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	3	164070261	164089906	16	0.1551
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	3	164096452	164108674	10	-0.6244
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	3	164108689	170212874	3441	-0.014
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	3	170216096	170221322	2	1.8104
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	3	170222521	189077988	11902	0.0022
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	3	189078072	189078407	2	2.053
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	3	189078434	199380515	6546	-0.0077
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	4	2281	9819488	5800	-0.0066
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	4	9832514	9840596	28	-1.5216
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	4	9843312	9999813	177	-0.0281
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	4	10001452	10009766	16	0.5445
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	4	10011816	34455449	16796	0.007
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	4	34462895	34506267	39	-0.3667
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	4	34506308	57944615	12716	0.0027
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	4	57951132	57953111	6	-1.1348
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	4	57958008	69057536	6761	-0.0012
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	4	69057550	69219747	70	0.3651
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	4	69222620	104965020	21414	0.0041
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	4	104971079	104971086	5	1.503
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	4	104971093	162093390	34352	0.0033
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	4	162093450	162104358	22	-0.6169
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	4	162104369	191261904	19202	-0.0023
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	5	68532	13051925	10277	-0.0069
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	5	13058214	13067507	3	-1.7957
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	5	13068045	31240468	11309	-0.001
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	5	31240600	31241092	2	-2.2063
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	5	31242358	46132644	9144	0.0033
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	5	46132816	46133510	3	1.1961
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	5	46134275	68860757	12450	3e-04
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	5	68864789	70689828	29	-0.4946
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	5	70696507	150182398	49343	0.0042
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	5	150185693	150198797	8	-0.9285
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	5	150203580	169303954	13307	0.0095
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	5	169304496	169307009	2	1.5323
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	5	169307427	173139959	2763	-0.0016
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	5	173141214	173141492	2	1.7551
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	5	173141606	180722926	4402	-0.0035
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	6	94661	366317	235	-0.0316
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	6	367408	367736	2	2.1207
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	6	368014	18447912	13955	-4e-04
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	6	18447985	18448277	3	1.4137
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	6	18450113	19148098	584	0.0074
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	6	19150160	19150797	3	-0.8974
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	6	19152681	22671867	2556	0.015
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	6	22673069	22673106	2	-1.6217
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	6	22673131	29945051	4383	-0.0015
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	6	29945166	29958345	19	-0.6417
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	6	29958359	32688595	1229	4e-04
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	6	32689816	32710085	11	-0.8423
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	6	32710247	69710480	21101	0.0034
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	6	69713776	69717962	2	2.2603
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	6	69719088	74648586	3167	0.0045
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	6	74648953	74658138	10	0.6309
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	6	74660283	79029340	2777	-0.0106
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	6	79029443	79080610	75	0.25
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	6	79080823	103841522	15501	-0.0011
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	6	103844669	103845026	8	-1.0897
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	6	103845099	103858257	12	0.0584
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	6	103858570	103868754	26	-0.9893
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	6	103872163	170892930	44192	0.0011
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	52911	6930549	3476	-0.0118
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	6931044	6932420	2	1.8824
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	6934712	22401305	12606	0.0046
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	22401997	22403012	2	-2.0526
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	22405279	26098815	2767	7e-04
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	26108917	26111938	4	-2.6684
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	26113744	54353999	19682	0.007
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	54354003	54354011	5	-1.4682
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	54360982	68346447	5281	-0.0152
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	68351859	68352255	2	-2.0259
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	68355947	91195805	13104	-6e-04
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	91196230	91196969	7	1.0482
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	91197272	95299204	2529	0.0054
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	95305557	95323291	13	-1.001
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	95325994	100921944	2812	0.0037
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	100922118	100924034	2	1.73
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	100928587	104646265	2081	-0.0079
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	104651112	104970246	148	0.4193
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	104985626	109224916	2822	0.0044
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	109224993	109240949	17	-0.4583
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	109240998	125831723	10032	0.0024
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	125831749	125833851	16	0.5675
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	125834112	125856083	24	-0.0405
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	125857178	125857447	2	1.5951
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	125863219	142154229	10398	0.0072
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	142154515	142165614	28	0.589
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	142165684	143540182	844	-0.0342
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	143540378	143697880	40	-0.7449
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	7	143705862	158819765	9683	-0.0084
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	8	21254	7158507	7816	-0.0184
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	8	7174042	7174056	2	2.318
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	8	7181231	25028104	13991	2e-04
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	8	25030360	25040250	27	0.4653
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	8	25047021	32803507	5446	0.0052
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	8	32803567	32806161	3	1.2869
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	8	32807001	39365832	3582	0.0067
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	8	39366268	39503281	53	0.6349
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	8	39503857	58336673	9237	0.0026
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	8	58338213	58352828	4	-1.0856
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	8	58356932	58505688	118	-0.0081
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	8	58505888	58511551	8	0.9262
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	8	58512321	86927516	17249	0.0071
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	8	86929219	86930596	4	0.6785
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	8	86930614	86933561	8	0.2887
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	8	86933883	86940725	4	0.713
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	8	86942476	107168335	12236	0.005
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	8	107168416	107170402	3	1.2849
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	8	107170756	107317406	93	-0.041
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	8	107317922	107318609	2	1.6039
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	8	107318735	112360670	3057	0.0052
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	8	112363455	112364436	10	1.1401
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	8	112369457	144770300	22396	-0.0021
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	8	144776300	144778951	9	-1.9063
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	8	144790132	146268959	506	-0.0299
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	9	36587	43575109	31373	0.0037
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	9	43590208	43712046	21	-0.6205
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	9	43716914	67673801	243	0.0752
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	9	67675871	67678367	8	1.4183
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	9	67699736	140211215	48198	0.0052
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	10	62759	4280814	3582	8e-04
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	10	4280838	4281016	3	2.0015
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	10	4284071	57257935	34374	0.0038
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	10	57258298	57260774	2	2.3527
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	10	57263103	135079131	52906	0.0032
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	10	135079709	135079858	2	-2.3882
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	10	135082644	135356694	151	-0.0709
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	11	188510	18897446	12748	-0.0028
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	11	18905648	18917754	40	-0.9067
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	11	18917857	25175687	4971	0.0059
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	11	25175721	25177588	2	1.7666
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	11	25180829	33369699	5391	0.0056
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	11	33370460	33371727	4	1.4228
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	11	33373919	48886497	10346	0.0109
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	11	48886708	48886904	2	1.9657
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	11	48921309	59981411	4123	-0.0029
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	11	59985323	59985970	10	-0.7692
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	11	59987642	64961542	2384	-0.0018
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	11	64962593	64965840	2	1.8983
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	11	64967595	80962410	9072	-7e-04
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	11	80962562	80968833	8	0.8419
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	11	80969022	84164365	2130	0.0123
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	11	84164651	84170883	2	2.0347
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	11	84171525	84213553	27	-0.0356
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	11	84214283	84214566	3	1.0895
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	11	84219622	85983465	1210	0.0173
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	11	85983523	85983702	3	-2.3293
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	11	85992822	91470137	3568	-6e-04
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	11	91470306	91470691	2	2.7019
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	11	91472352	134449982	31020	0.0077
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	12	20703	20912173	13893	0.0022
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	12	20912215	21301356	252	-0.6879
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	12	21306914	33278024	8772	0.0113
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	12	33280096	33286685	5	-1.862
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	12	33290320	130391312	61185	0.0059
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	12	130391644	130391708	2	-2.2886
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	12	130399163	132288262	882	-0.0167
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	13	17924949	36969135	13552	3e-04
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	13	36970036	36982757	16	-1.4211
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	13	36986330	50443055	9121	0.008
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	13	50444912	50447199	2	2.1384
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	13	50447558	56649097	3413	0.0074
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	13	56656271	56676381	34	-1.4095
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	13	56687715	82999192	16910	0.007
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	13	83003850	83054013	45	-0.911
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	13	83059130	94797015	7535	0.0014
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	13	94797159	94810757	12	0.508
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	13	94810791	104820723	7196	0.0052
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	13	104820987	104824556	2	2.099
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	13	104824859	114126499	6428	-0.004
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	14	18072124	19188667	77	0.0162
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	14	19205064	19490079	110	-0.2519
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	14	19492423	45879032	16627	0.01
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	14	45881685	45882211	2	1.7734
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	14	45882488	73076460	17502	0.002
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	14	73076604	73090732	7	-1.4744
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	14	73099653	97199755	16161	0.0068
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	14	97199805	97201645	10	0.7114
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	14	97201662	105786534	4703	-0.0017
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	14	105788401	105897157	49	0.4868
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	14	105897684	106356482	302	-0.0219
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	15	18276341	18476969	49	-0.1101
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	15	18491920	18838435	49	0.761
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	15	18841465	18841578	7	-0.7136
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	15	18846002	20088838	317	0.891
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	15	20224763	21934123	876	0.0059
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	15	21935658	21984678	29	-0.9039
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	15	21985041	28354194	3814	0.0071
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	15	28354232	28579861	58	-0.4269
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	15	28583081	32501415	2610	0.0015
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	15	32507087	32643110	73	-1.7667
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	15	32645302	32717043	51	-0.0362
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	15	32717219	32762085	53	-0.7079
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	15	32762728	36911307	2884	0.0091
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	15	36914039	36920838	5	1.2328
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	15	36923877	74678566	23459	0.0045
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	15	74678682	74682830	20	0.682
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	15	74689234	100286563	17670	-0.0018
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	16	777	76929109	41805	0.0037
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	16	76929941	76942239	15	0.8549
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	16	76942266	88815036	10622	3e-04
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	17	526	10828987	6415	-3e-04
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	17	10836404	10836761	2	-3.8782
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	17	10839544	36676583	14536	0.0012
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	17	36676603	36683976	20	0.9665
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	17	36684057	41785076	2644	-0.0035
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	17	41791196	42139861	43	0.5837
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	17	42140165	76243458	20634	0.0076
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	17	76244388	76248774	2	2.1763
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	17	76248895	78643088	961	-0.0233
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	18	1543	76116029	50777	0.0031
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	19	41910	56823625	24932	-0.0021
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	19	56834164	56848348	15	-0.6592
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	19	56849081	63789666	4377	-0.0115
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	20	9305	1508787	1201	0.0056
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	20	1508802	1530207	40	0.8882
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	20	1538257	62426597	41208	0.0055
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	21	9758742	13517615	164	-0.1607
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	21	13518903	13525448	3	1.7512
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	21	13534480	46921385	24232	0.0026
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	22	14432528	14441342	5	-1.1795
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	22	14457141	22674422	4613	-0.0354
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	22	22680529	22726814	19	0.5833
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	22	22731529	37681412	10861	-0.0018
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	22	37693565	37705253	24	-0.4179
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	22	37719574	49581321	8011	-0.0136
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	X	108477	64001692	34460	0.0036
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	X	64004051	64013786	4	-2.0554
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	X	64014496	154835548	50088	0.0034
CHEEP_p_TCGA_b120_121_SNP_N_GenomeWideSNP_6_A02_777592	Y	2710438	57427647	8589	-0.772
