# Created: Sat Dec 03 01:12:38 EST 2011 by achernia
# Job: 2042928    server:  http://cga-genepattern:8090/gp/
# Module: Gistic2_Analysis urn:lsid:broadinstitute.org:cancer.genome.analysis:00264:95
# Parameters: 
#    seg_file = freeze_brca19.seg   /gp/getFile.jsp?job=2042928&file=achernia_run8746718093406872522.tmp%2Ffreeze_brca19.seg
#    markers_file = /xchip/tcga/CancerGenomeAnalysisData/trunk/SNP6_annotations/genome.info.6.0_hg19.na31.minus_autosomal_cnvs.txt
#    refgene_file = /xchip/gistic/variables/GAFs/hg19.gaf.June2011.mat
#    cnv_files = /xchip/gistic/CNV/CNV.hg19.XandYchrom.txt
#    amp_thresh = 0.3
#    del_thresh = 0.3
