Source Name	Provider	Material Type	Term Source REF	Characteristics[Organism]	Term Source REF	Characteristics[Sex]	Term Source REF	Characteristics[DiseaseState]	Term Source REF	Comment[OCG Cohort]	Sample Name	Material Type	Term Source REF	Characteristics[OrganismPart]	Term Source REF	Description	Protocol REF	Performer	Extract Name	Material Type	Term Source REF	Comment[SRA_SAMPLE]	Protocol REF	Protocol REF	Performer	Extract Name	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[LIBRARY_SELECTION]	Comment[NOMINAL_LENGTH]	Comment[NOMINAL_SDEV]	Comment[LIBRARY_NAME]	Comment[SRA_EXPERIMENT]	Description	Protocol REF	Performer	Assay Name	Technology Type	Term Source REF	Comment[SPOT_LENGTH]	Protocol REF	Parameter Value[Software Versions]	Protocol REF	Parameter Value[Software Versions]	Derived Array Data File	Comment[SRA_RUN]	Comment[SRA_FILE_URI]	Comment[OCG Data Level]	Comment[ASSEMBLY_NAME]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]
TARGET-20-PAEEYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEEYP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEEYP-04A-01D	DNA	EFO	SRS160264	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAEEYP-04A-01D ING_AMLSRG.PAEEYP04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAEEYP04-1_1pA	SRX100067	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAEEYP-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAEEYP-04A-01D ING_AMLSRG.PAEEYP04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_1.bam	SRR563875	@dbgap@:reads/SRP012000/SRS160264/SRX100067/SRR563875/SRR563875.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAEEYP-04A-01D.VAF_Comparison.png	3
TARGET-20-PAEEYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEEYP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEEYP-04A-01D	DNA	EFO	SRS160264	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAEEYP-04A-01D ING_AMLSRG.PAEEYP04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAEEYP04-1_1pA	SRX100067	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAEEYP-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAEEYP-04A-01D ING_AMLSRG.PAEEYP04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_1.bam	SRR563875	@dbgap@:reads/SRP012000/SRS160264/SRX100067/SRR563875/SRR563875.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAEEYP-04A-01D.VAF_GenomeWide_Relapse.png	3
TARGET-20-PAEEYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEEYP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEEYP-04A-01D	DNA	EFO	SRS160264	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAEEYP-04A-01D ING_AMLSRG.PAEEYP04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAEEYP04-1_1pA	SRX100067	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAEEYP-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAEEYP-04A-01D ING_AMLSRG.PAEEYP04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_1.bam	SRR563875	@dbgap@:reads/SRP012000/SRS160264/SRX100067/SRR563875/SRR563875.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PAEEYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEEYP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEEYP-04A-01D	DNA	EFO	SRS160264	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAEEYP-04A-01D ING_AMLSRG.PAEEYP04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAEEYP04-1_1pA	SRX100067	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAEEYP-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAEEYP-04A-01D ING_AMLSRG.PAEEYP04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_1.bam	SRR563875	@dbgap@:reads/SRP012000/SRS160264/SRX100067/SRR563875/SRR563875.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PAEEYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEEYP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEEYP-04A-01D	DNA	EFO	SRS160264	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAEEYP-04A-01D ING_AMLSRG.PAEEYP04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAEEYP04-1_1pA	SRX100067	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAEEYP-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAEEYP-04A-01D ING_AMLSRG.PAEEYP04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_1.bam	SRR563875	@dbgap@:reads/SRP012000/SRS160264/SRX100067/SRR563875/SRR563875.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PAEEYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEEYP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEEYP-09A-01D	DNA	EFO	SRS287471	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAEEYP-09A-01D ING_AMLSRG.PAEEYP03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PAEEYP03-1_1pA	SRX100066		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAEEYP-09A-01D ING_AMLSRG.PAEEYP03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_3.bam	SRR563908	@dbgap@:reads/SRP012000/SRS287471/SRX100066/SRR563908/SRR563908.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAEEYP-09A-01D.VAF_Comparison.png	3
TARGET-20-PAEEYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEEYP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEEYP-09A-01D	DNA	EFO	SRS287471	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAEEYP-09A-01D ING_AMLSRG.PAEEYP03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PAEEYP03-1_1pA	SRX100066		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAEEYP-09A-01D ING_AMLSRG.PAEEYP03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_3.bam	SRR563908	@dbgap@:reads/SRP012000/SRS287471/SRX100066/SRR563908/SRR563908.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAEEYP-09A-01D.VAF_GenomeWide_Primary.png	3
TARGET-20-PAEEYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEEYP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEEYP-09A-01D	DNA	EFO	SRS287471	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAEEYP-09A-01D ING_AMLSRG.PAEEYP03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PAEEYP03-1_1pA	SRX100066		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAEEYP-09A-01D ING_AMLSRG.PAEEYP03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_3.bam	SRR563908	@dbgap@:reads/SRP012000/SRS287471/SRX100066/SRR563908/SRR563908.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PAEEYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEEYP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEEYP-09A-01D	DNA	EFO	SRS287471	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAEEYP-09A-01D ING_AMLSRG.PAEEYP03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PAEEYP03-1_1pA	SRX100066		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAEEYP-09A-01D ING_AMLSRG.PAEEYP03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_3.bam	SRR563908	@dbgap@:reads/SRP012000/SRS287471/SRX100066/SRR563908/SRR563908.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PAEEYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEEYP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEEYP-09A-01D	DNA	EFO	SRS287471	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAEEYP-09A-01D ING_AMLSRG.PAEEYP03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PAEEYP03-1_1pA	SRX100066		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAEEYP-09A-01D ING_AMLSRG.PAEEYP03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_3.bam	SRR563908	@dbgap@:reads/SRP012000/SRS287471/SRX100066/SRR563908/SRR563908.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PAEEYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEEYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEEYP-14A-01D	DNA	EFO	SRS160265	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAEEYP-14A-01D ING_AMLSRG.PAEEYP14-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAEEYP14-1_2pA	SRX100068	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAEEYP-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAEEYP-14A-01D ING_AMLSRG.PAEEYP14-1_2pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_2.bam	SRR563874	@dbgap@:reads/SRP012000/SRS160265/SRX100068/SRR563874/SRR563874.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAEEYP-04A-01D.VAF_Comparison.png	3
TARGET-20-PAEEYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEEYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEEYP-14A-01D	DNA	EFO	SRS160265	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAEEYP-14A-01D ING_AMLSRG.PAEEYP14-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAEEYP14-1_2pA	SRX100068	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAEEYP-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAEEYP-14A-01D ING_AMLSRG.PAEEYP14-1_2pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_2.bam	SRR563874	@dbgap@:reads/SRP012000/SRS160265/SRX100068/SRR563874/SRR563874.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAEEYP-04A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PAEEYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEEYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEEYP-14A-01D	DNA	EFO	SRS160265	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAEEYP-14A-01D ING_AMLSRG.PAEEYP14-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAEEYP14-1_2pA	SRX100068	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAEEYP-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAEEYP-14A-01D ING_AMLSRG.PAEEYP14-1_2pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_2.bam	SRR563874	@dbgap@:reads/SRP012000/SRS160265/SRX100068/SRR563874/SRR563874.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAEEYP-09A-01D.VAF_Comparison.png	3
TARGET-20-PAEEYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEEYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEEYP-14A-01D	DNA	EFO	SRS160265	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAEEYP-14A-01D ING_AMLSRG.PAEEYP14-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAEEYP14-1_2pA	SRX100068	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAEEYP-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAEEYP-14A-01D ING_AMLSRG.PAEEYP14-1_2pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_2.bam	SRR563874	@dbgap@:reads/SRP012000/SRS160265/SRX100068/SRR563874/SRR563874.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAEEYP-09A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PAEEYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEEYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEEYP-14A-01D	DNA	EFO	SRS160265	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAEEYP-14A-01D ING_AMLSRG.PAEEYP14-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAEEYP14-1_2pA	SRX100068	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAEEYP-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAEEYP-14A-01D ING_AMLSRG.PAEEYP14-1_2pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_2.bam	SRR563874	@dbgap@:reads/SRP012000/SRS160265/SRX100068/SRR563874/SRR563874.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PAEEYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEEYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEEYP-14A-01D	DNA	EFO	SRS160265	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAEEYP-14A-01D ING_AMLSRG.PAEEYP14-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAEEYP14-1_2pA	SRX100068	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAEEYP-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAEEYP-14A-01D ING_AMLSRG.PAEEYP14-1_2pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_2.bam	SRR563874	@dbgap@:reads/SRP012000/SRS160265/SRX100068/SRR563874/SRR563874.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PAEEYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEEYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEEYP-14A-01D	DNA	EFO	SRS160265	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAEEYP-14A-01D ING_AMLSRG.PAEEYP14-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAEEYP14-1_2pA	SRX100068	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAEEYP-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAEEYP-14A-01D ING_AMLSRG.PAEEYP14-1_2pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_2.bam	SRR563874	@dbgap@:reads/SRP012000/SRS160265/SRX100068/SRR563874/SRR563874.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PAEEYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAEEYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAEEYP-14A-01D	DNA	EFO	SRS160265	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAEEYP-14A-01D ING_AMLSRG.PAEEYP14-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAEEYP14-1_2pA	SRX100068	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAEEYP-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAEEYP-14A-01D ING_AMLSRG.PAEEYP14-1_2pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_2.bam	SRR563874	@dbgap@:reads/SRP012000/SRS160265/SRX100068/SRR563874/SRR563874.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-04A-01D	DNA	EFO	SRS160267	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAERAH-04A-01D ING_AMLSRG.PAERAH04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAERAH04-1_1pA	SRX100032	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAERAH-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAERAH-04A-01D ING_AMLSRG.PAERAH04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_6.bam	SRR563983	@dbgap@:reads/SRP012000/SRS160267/SRX100032/SRR563983/SRR563983.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAERAH-04A-01D.VAF_Comparison.png	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-04A-01D	DNA	EFO	SRS160267	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAERAH-04A-01D ING_AMLSRG.PAERAH04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAERAH04-1_1pA	SRX100032	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAERAH-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAERAH-04A-01D ING_AMLSRG.PAERAH04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_6.bam	SRR563983	@dbgap@:reads/SRP012000/SRS160267/SRX100032/SRR563983/SRR563983.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAERAH-04A-01D.VAF_GenomeWide_Relapse.png	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-04A-01D	DNA	EFO	SRS160267	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAERAH-04A-01D ING_AMLSRG.PAERAH04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAERAH04-1_1pA	SRX100032	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAERAH-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAERAH-04A-01D ING_AMLSRG.PAERAH04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_6.bam	SRR563983	@dbgap@:reads/SRP012000/SRS160267/SRX100032/SRR563983/SRR563983.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-04A-01D	DNA	EFO	SRS160267	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAERAH-04A-01D ING_AMLSRG.PAERAH04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAERAH04-1_1pA	SRX100032	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAERAH-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAERAH-04A-01D ING_AMLSRG.PAERAH04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_6.bam	SRR563983	@dbgap@:reads/SRP012000/SRS160267/SRX100032/SRR563983/SRR563983.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-04A-01D	DNA	EFO	SRS160267	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAERAH-04A-01D ING_AMLSRG.PAERAH04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAERAH04-1_1pA	SRX100032	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAERAH-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAERAH-04A-01D ING_AMLSRG.PAERAH04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_6.bam	SRR563983	@dbgap@:reads/SRP012000/SRS160267/SRX100032/SRR563983/SRR563983.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-01D	DNA	EFO	SRS287472	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAERAH-09A-01D ING_AMLSRG.PAERAH03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PAERAH03-1_1pA	SRX100016		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAERAH-09A-01D ING_AMLSRG.PAERAH03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_5.bam	SRR563914	@dbgap@:reads/SRP012000/SRS287472/SRX100016/SRR563914/SRR563914.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAERAH-09A-01D.VAF_Comparison.png	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-01D	DNA	EFO	SRS287472	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAERAH-09A-01D ING_AMLSRG.PAERAH03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PAERAH03-1_1pA	SRX100016		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAERAH-09A-01D ING_AMLSRG.PAERAH03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_5.bam	SRR563914	@dbgap@:reads/SRP012000/SRS287472/SRX100016/SRR563914/SRR563914.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAERAH-09A-01D.VAF_GenomeWide_Primary.png	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-01D	DNA	EFO	SRS287472	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAERAH-09A-01D ING_AMLSRG.PAERAH03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PAERAH03-1_1pA	SRX100016		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAERAH-09A-01D ING_AMLSRG.PAERAH03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_5.bam	SRR563914	@dbgap@:reads/SRP012000/SRS287472/SRX100016/SRR563914/SRR563914.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-01D	DNA	EFO	SRS287472	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAERAH-09A-01D ING_AMLSRG.PAERAH03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PAERAH03-1_1pA	SRX100016		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAERAH-09A-01D ING_AMLSRG.PAERAH03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_5.bam	SRR563914	@dbgap@:reads/SRP012000/SRS287472/SRX100016/SRR563914/SRR563914.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-09A-01D	DNA	EFO	SRS287472	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAERAH-09A-01D ING_AMLSRG.PAERAH03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PAERAH03-1_1pA	SRX100016		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAERAH-09A-01D ING_AMLSRG.PAERAH03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_5.bam	SRR563914	@dbgap@:reads/SRP012000/SRS287472/SRX100016/SRR563914/SRR563914.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-14A-01D	DNA	EFO	SRS160268	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAERAH-14A-01D ING_AMLSRG.PAERAH14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAERAH14-1_1pA	SRX100017	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAERAH-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAERAH-14A-01D ING_AMLSRG.PAERAH14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_4.bam	SRR564077	@dbgap@:reads/SRP012000/SRS160268/SRX100017/SRR564077/SRR564077.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAERAH-04A-01D.VAF_Comparison.png	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-14A-01D	DNA	EFO	SRS160268	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAERAH-14A-01D ING_AMLSRG.PAERAH14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAERAH14-1_1pA	SRX100017	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAERAH-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAERAH-14A-01D ING_AMLSRG.PAERAH14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_4.bam	SRR564077	@dbgap@:reads/SRP012000/SRS160268/SRX100017/SRR564077/SRR564077.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAERAH-04A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-14A-01D	DNA	EFO	SRS160268	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAERAH-14A-01D ING_AMLSRG.PAERAH14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAERAH14-1_1pA	SRX100017	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAERAH-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAERAH-14A-01D ING_AMLSRG.PAERAH14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_4.bam	SRR564077	@dbgap@:reads/SRP012000/SRS160268/SRX100017/SRR564077/SRR564077.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAERAH-09A-01D.VAF_Comparison.png	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-14A-01D	DNA	EFO	SRS160268	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAERAH-14A-01D ING_AMLSRG.PAERAH14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAERAH14-1_1pA	SRX100017	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAERAH-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAERAH-14A-01D ING_AMLSRG.PAERAH14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_4.bam	SRR564077	@dbgap@:reads/SRP012000/SRS160268/SRX100017/SRR564077/SRR564077.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAERAH-09A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-14A-01D	DNA	EFO	SRS160268	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAERAH-14A-01D ING_AMLSRG.PAERAH14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAERAH14-1_1pA	SRX100017	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAERAH-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAERAH-14A-01D ING_AMLSRG.PAERAH14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_4.bam	SRR564077	@dbgap@:reads/SRP012000/SRS160268/SRX100017/SRR564077/SRR564077.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-14A-01D	DNA	EFO	SRS160268	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAERAH-14A-01D ING_AMLSRG.PAERAH14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAERAH14-1_1pA	SRX100017	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAERAH-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAERAH-14A-01D ING_AMLSRG.PAERAH14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_4.bam	SRR564077	@dbgap@:reads/SRP012000/SRS160268/SRX100017/SRR564077/SRR564077.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-14A-01D	DNA	EFO	SRS160268	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAERAH-14A-01D ING_AMLSRG.PAERAH14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAERAH14-1_1pA	SRX100017	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAERAH-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAERAH-14A-01D ING_AMLSRG.PAERAH14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_4.bam	SRR564077	@dbgap@:reads/SRP012000/SRS160268/SRX100017/SRR564077/SRR564077.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PAERAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAERAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAERAH-14A-01D	DNA	EFO	SRS160268	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAERAH-14A-01D ING_AMLSRG.PAERAH14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAERAH14-1_1pA	SRX100017	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAERAH-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAERAH-14A-01D ING_AMLSRG.PAERAH14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_4.bam	SRR564077	@dbgap@:reads/SRP012000/SRS160268/SRX100017/SRR564077/SRR564077.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PAKKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKKBK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKKBK-04A-01D	DNA	EFO	SRS160270	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAKKBK-04A-01D ING_AMLSRG.PAKKBK04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAKKBK04-1_1pA	SRX100048	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAKKBK-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAKKBK-04A-01D ING_AMLSRG.PAKKBK04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_8.bam	SRR564079	@dbgap@:reads/SRP012000/SRS160270/SRX100048/SRR564079/SRR564079.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAKKBK-04A-01D.VAF_Comparison.png	3
TARGET-20-PAKKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKKBK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKKBK-04A-01D	DNA	EFO	SRS160270	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAKKBK-04A-01D ING_AMLSRG.PAKKBK04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAKKBK04-1_1pA	SRX100048	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAKKBK-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAKKBK-04A-01D ING_AMLSRG.PAKKBK04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_8.bam	SRR564079	@dbgap@:reads/SRP012000/SRS160270/SRX100048/SRR564079/SRR564079.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAKKBK-04A-01D.VAF_GenomeWide_Relapse.png	3
TARGET-20-PAKKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKKBK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKKBK-04A-01D	DNA	EFO	SRS160270	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAKKBK-04A-01D ING_AMLSRG.PAKKBK04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAKKBK04-1_1pA	SRX100048	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAKKBK-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAKKBK-04A-01D ING_AMLSRG.PAKKBK04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_8.bam	SRR564079	@dbgap@:reads/SRP012000/SRS160270/SRX100048/SRR564079/SRR564079.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PAKKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKKBK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKKBK-04A-01D	DNA	EFO	SRS160270	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAKKBK-04A-01D ING_AMLSRG.PAKKBK04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAKKBK04-1_1pA	SRX100048	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAKKBK-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAKKBK-04A-01D ING_AMLSRG.PAKKBK04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_8.bam	SRR564079	@dbgap@:reads/SRP012000/SRS160270/SRX100048/SRR564079/SRR564079.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PAKKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKKBK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKKBK-04A-01D	DNA	EFO	SRS160270	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAKKBK-04A-01D ING_AMLSRG.PAKKBK04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAKKBK04-1_1pA	SRX100048	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAKKBK-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAKKBK-04A-01D ING_AMLSRG.PAKKBK04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_8.bam	SRR564079	@dbgap@:reads/SRP012000/SRS160270/SRX100048/SRR564079/SRR564079.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PAKKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKKBK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKKBK-09A-01D	DNA	EFO	SRS287473	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAKKBK-09A-01D ING_AMLSRG.PAKKBK03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PAKKBK03-1_1pA	SRX100033		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAKKBK-09A-01D ING_AMLSRG.PAKKBK03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_7.bam	SRR564018	@dbgap@:reads/SRP012000/SRS287473/SRX100033/SRR564018/SRR564018.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAKKBK-09A-01D.VAF_Comparison.png	3
TARGET-20-PAKKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKKBK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKKBK-09A-01D	DNA	EFO	SRS287473	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAKKBK-09A-01D ING_AMLSRG.PAKKBK03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PAKKBK03-1_1pA	SRX100033		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAKKBK-09A-01D ING_AMLSRG.PAKKBK03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_7.bam	SRR564018	@dbgap@:reads/SRP012000/SRS287473/SRX100033/SRR564018/SRR564018.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAKKBK-09A-01D.VAF_GenomeWide_Primary.png	3
TARGET-20-PAKKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKKBK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKKBK-09A-01D	DNA	EFO	SRS287473	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAKKBK-09A-01D ING_AMLSRG.PAKKBK03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PAKKBK03-1_1pA	SRX100033		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAKKBK-09A-01D ING_AMLSRG.PAKKBK03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_7.bam	SRR564018	@dbgap@:reads/SRP012000/SRS287473/SRX100033/SRR564018/SRR564018.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PAKKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKKBK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKKBK-09A-01D	DNA	EFO	SRS287473	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAKKBK-09A-01D ING_AMLSRG.PAKKBK03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PAKKBK03-1_1pA	SRX100033		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAKKBK-09A-01D ING_AMLSRG.PAKKBK03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_7.bam	SRR564018	@dbgap@:reads/SRP012000/SRS287473/SRX100033/SRR564018/SRR564018.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PAKKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKKBK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKKBK-09A-01D	DNA	EFO	SRS287473	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAKKBK-09A-01D ING_AMLSRG.PAKKBK03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PAKKBK03-1_1pA	SRX100033		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAKKBK-09A-01D ING_AMLSRG.PAKKBK03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_7.bam	SRR564018	@dbgap@:reads/SRP012000/SRS287473/SRX100033/SRR564018/SRR564018.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PAKKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKKBK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKKBK-14A-01D	DNA	EFO	SRS160271	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAKKBK-14A-01D ING_AMLSRG.PAKKBK14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAKKBK14-1_1pA	SRX100049	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAKKBK-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAKKBK-14A-01D ING_AMLSRG.PAKKBK14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_3.bam	SRR563638	@dbgap@:reads/SRP012000/SRS160271/SRX100049/SRR563638/SRR563638.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAKKBK-04A-01D.VAF_Comparison.png	3
TARGET-20-PAKKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKKBK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKKBK-14A-01D	DNA	EFO	SRS160271	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAKKBK-14A-01D ING_AMLSRG.PAKKBK14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAKKBK14-1_1pA	SRX100049	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAKKBK-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAKKBK-14A-01D ING_AMLSRG.PAKKBK14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_3.bam	SRR563638	@dbgap@:reads/SRP012000/SRS160271/SRX100049/SRR563638/SRR563638.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAKKBK-04A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PAKKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKKBK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKKBK-14A-01D	DNA	EFO	SRS160271	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAKKBK-14A-01D ING_AMLSRG.PAKKBK14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAKKBK14-1_1pA	SRX100049	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAKKBK-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAKKBK-14A-01D ING_AMLSRG.PAKKBK14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_3.bam	SRR563638	@dbgap@:reads/SRP012000/SRS160271/SRX100049/SRR563638/SRR563638.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAKKBK-09A-01D.VAF_Comparison.png	3
TARGET-20-PAKKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKKBK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKKBK-14A-01D	DNA	EFO	SRS160271	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAKKBK-14A-01D ING_AMLSRG.PAKKBK14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAKKBK14-1_1pA	SRX100049	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAKKBK-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAKKBK-14A-01D ING_AMLSRG.PAKKBK14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_3.bam	SRR563638	@dbgap@:reads/SRP012000/SRS160271/SRX100049/SRR563638/SRR563638.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAKKBK-09A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PAKKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKKBK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKKBK-14A-01D	DNA	EFO	SRS160271	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAKKBK-14A-01D ING_AMLSRG.PAKKBK14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAKKBK14-1_1pA	SRX100049	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAKKBK-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAKKBK-14A-01D ING_AMLSRG.PAKKBK14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_3.bam	SRR563638	@dbgap@:reads/SRP012000/SRS160271/SRX100049/SRR563638/SRR563638.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PAKKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKKBK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKKBK-14A-01D	DNA	EFO	SRS160271	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAKKBK-14A-01D ING_AMLSRG.PAKKBK14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAKKBK14-1_1pA	SRX100049	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAKKBK-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAKKBK-14A-01D ING_AMLSRG.PAKKBK14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_3.bam	SRR563638	@dbgap@:reads/SRP012000/SRS160271/SRX100049/SRR563638/SRR563638.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PAKKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKKBK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKKBK-14A-01D	DNA	EFO	SRS160271	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAKKBK-14A-01D ING_AMLSRG.PAKKBK14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAKKBK14-1_1pA	SRX100049	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAKKBK-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAKKBK-14A-01D ING_AMLSRG.PAKKBK14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_3.bam	SRR563638	@dbgap@:reads/SRP012000/SRS160271/SRX100049/SRR563638/SRR563638.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PAKKBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAKKBK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAKKBK-14A-01D	DNA	EFO	SRS160271	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAKKBK-14A-01D ING_AMLSRG.PAKKBK14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PAKKBK14-1_1pA	SRX100049	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAKKBK-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAKKBK-14A-01D ING_AMLSRG.PAKKBK14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_3.bam	SRR563638	@dbgap@:reads/SRP012000/SRS160271/SRX100049/SRR563638/SRR563638.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-01D	DNA	EFO	SRS160273	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAMYAS-04A-01D ING_AMLSRG.PAMYAS04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	180	18	ING_AMLSRG.PAMYAS04-1_1pA	SRX155119	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAMYAS-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAMYAS-04A-01D ING_AMLSRG.PAMYAS04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_5_1.bam	SRR566178	@dbgap@:reads/SRP012000/SRS160273/SRX155119/SRR566178/SRR566178.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAMYAS-04A-01D.VAF_Comparison.png	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-01D	DNA	EFO	SRS160273	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAMYAS-04A-01D ING_AMLSRG.PAMYAS04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	180	18	ING_AMLSRG.PAMYAS04-1_1pA	SRX155119	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAMYAS-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAMYAS-04A-01D ING_AMLSRG.PAMYAS04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_5_1.bam	SRR566178	@dbgap@:reads/SRP012000/SRS160273/SRX155119/SRR566178/SRR566178.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAMYAS-04A-01D.VAF_GenomeWide_Relapse.png	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-01D	DNA	EFO	SRS160273	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAMYAS-04A-01D ING_AMLSRG.PAMYAS04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	180	18	ING_AMLSRG.PAMYAS04-1_1pA	SRX155119	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAMYAS-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAMYAS-04A-01D ING_AMLSRG.PAMYAS04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_5_1.bam	SRR566178	@dbgap@:reads/SRP012000/SRS160273/SRX155119/SRR566178/SRR566178.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-01D	DNA	EFO	SRS160273	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAMYAS-04A-01D ING_AMLSRG.PAMYAS04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	180	18	ING_AMLSRG.PAMYAS04-1_1pA	SRX155119	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAMYAS-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAMYAS-04A-01D ING_AMLSRG.PAMYAS04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_5_1.bam	SRR566178	@dbgap@:reads/SRP012000/SRS160273/SRX155119/SRR566178/SRR566178.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-04A-01D	DNA	EFO	SRS160273	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAMYAS-04A-01D ING_AMLSRG.PAMYAS04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	180	18	ING_AMLSRG.PAMYAS04-1_1pA	SRX155119	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAMYAS-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAMYAS-04A-01D ING_AMLSRG.PAMYAS04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_5_1.bam	SRR566178	@dbgap@:reads/SRP012000/SRS160273/SRX155119/SRR566178/SRR566178.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-01D	DNA	EFO	SRS287474	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAMYAS-09A-01D ING_AMLSRG.PAMYAS03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	164		ING_AMLSRG.PAMYAS03-1_1pA	SRX155118		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAMYAS-09A-01D ING_AMLSRG.PAMYAS03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_4_1.bam	SRR566176	@dbgap@:reads/SRP012000/SRS287474/SRX155118/SRR566176/SRR566176.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAMYAS-09A-01D.VAF_Comparison.png	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-01D	DNA	EFO	SRS287474	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAMYAS-09A-01D ING_AMLSRG.PAMYAS03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	164		ING_AMLSRG.PAMYAS03-1_1pA	SRX155118		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAMYAS-09A-01D ING_AMLSRG.PAMYAS03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_4_1.bam	SRR566176	@dbgap@:reads/SRP012000/SRS287474/SRX155118/SRR566176/SRR566176.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAMYAS-09A-01D.VAF_GenomeWide_Primary.png	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-01D	DNA	EFO	SRS287474	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAMYAS-09A-01D ING_AMLSRG.PAMYAS03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	164		ING_AMLSRG.PAMYAS03-1_1pA	SRX155118		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAMYAS-09A-01D ING_AMLSRG.PAMYAS03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_4_1.bam	SRR566176	@dbgap@:reads/SRP012000/SRS287474/SRX155118/SRR566176/SRR566176.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-01D	DNA	EFO	SRS287474	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAMYAS-09A-01D ING_AMLSRG.PAMYAS03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	164		ING_AMLSRG.PAMYAS03-1_1pA	SRX155118		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAMYAS-09A-01D ING_AMLSRG.PAMYAS03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_4_1.bam	SRR566176	@dbgap@:reads/SRP012000/SRS287474/SRX155118/SRR566176/SRR566176.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-09A-01D	DNA	EFO	SRS287474	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAMYAS-09A-01D ING_AMLSRG.PAMYAS03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	164		ING_AMLSRG.PAMYAS03-1_1pA	SRX155118		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAMYAS-09A-01D ING_AMLSRG.PAMYAS03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_4_1.bam	SRR566176	@dbgap@:reads/SRP012000/SRS287474/SRX155118/SRR566176/SRR566176.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-01D	DNA	EFO	SRS160274	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAMYAS-14A-01D ING_AMLSRG.PAMYAS14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	175	17.5	ING_AMLSRG.PAMYAS14-1_1pA	SRX155120	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAMYAS-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAMYAS-14A-01D ING_AMLSRG.PAMYAS14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_4_1.bam	SRR566189	@dbgap@:reads/SRP012000/SRS160274/SRX155120/SRR566189/SRR566189.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAMYAS-04A-01D.VAF_Comparison.png	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-01D	DNA	EFO	SRS160274	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAMYAS-14A-01D ING_AMLSRG.PAMYAS14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	175	17.5	ING_AMLSRG.PAMYAS14-1_1pA	SRX155120	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAMYAS-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAMYAS-14A-01D ING_AMLSRG.PAMYAS14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_4_1.bam	SRR566189	@dbgap@:reads/SRP012000/SRS160274/SRX155120/SRR566189/SRR566189.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAMYAS-04A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-01D	DNA	EFO	SRS160274	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAMYAS-14A-01D ING_AMLSRG.PAMYAS14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	175	17.5	ING_AMLSRG.PAMYAS14-1_1pA	SRX155120	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAMYAS-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAMYAS-14A-01D ING_AMLSRG.PAMYAS14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_4_1.bam	SRR566189	@dbgap@:reads/SRP012000/SRS160274/SRX155120/SRR566189/SRR566189.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAMYAS-09A-01D.VAF_Comparison.png	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-01D	DNA	EFO	SRS160274	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAMYAS-14A-01D ING_AMLSRG.PAMYAS14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	175	17.5	ING_AMLSRG.PAMYAS14-1_1pA	SRX155120	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAMYAS-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAMYAS-14A-01D ING_AMLSRG.PAMYAS14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_4_1.bam	SRR566189	@dbgap@:reads/SRP012000/SRS160274/SRX155120/SRR566189/SRR566189.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PAMYAS-09A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-01D	DNA	EFO	SRS160274	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAMYAS-14A-01D ING_AMLSRG.PAMYAS14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	175	17.5	ING_AMLSRG.PAMYAS14-1_1pA	SRX155120	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAMYAS-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAMYAS-14A-01D ING_AMLSRG.PAMYAS14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_4_1.bam	SRR566189	@dbgap@:reads/SRP012000/SRS160274/SRX155120/SRR566189/SRR566189.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-01D	DNA	EFO	SRS160274	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAMYAS-14A-01D ING_AMLSRG.PAMYAS14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	175	17.5	ING_AMLSRG.PAMYAS14-1_1pA	SRX155120	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAMYAS-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAMYAS-14A-01D ING_AMLSRG.PAMYAS14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_4_1.bam	SRR566189	@dbgap@:reads/SRP012000/SRS160274/SRX155120/SRR566189/SRR566189.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-01D	DNA	EFO	SRS160274	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAMYAS-14A-01D ING_AMLSRG.PAMYAS14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	175	17.5	ING_AMLSRG.PAMYAS14-1_1pA	SRX155120	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAMYAS-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAMYAS-14A-01D ING_AMLSRG.PAMYAS14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_4_1.bam	SRR566189	@dbgap@:reads/SRP012000/SRS160274/SRX155120/SRR566189/SRR566189.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PAMYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PAMYAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PAMYAS-14A-01D	DNA	EFO	SRS160274	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PAMYAS-14A-01D ING_AMLSRG.PAMYAS14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	175	17.5	ING_AMLSRG.PAMYAS14-1_1pA	SRX155120	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PAMYAS-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PAMYAS-14A-01D ING_AMLSRG.PAMYAS14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_4_1.bam	SRR566189	@dbgap@:reads/SRP012000/SRS160274/SRX155120/SRR566189/SRR566189.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-04A-01D	DNA	EFO	SRS160276	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANGTF-04A-01D ING_AMLSRG.PANGTF04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANGTF04-1_1pA	SRX100058	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANGTF-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANGTF-04A-01D ING_AMLSRG.PANGTF04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_5.bam	SRR563636	@dbgap@:reads/SRP012000/SRS160276/SRX100058/SRR563636/SRR563636.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANGTF-04A-01D.VAF_Comparison.png	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-04A-01D	DNA	EFO	SRS160276	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANGTF-04A-01D ING_AMLSRG.PANGTF04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANGTF04-1_1pA	SRX100058	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANGTF-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANGTF-04A-01D ING_AMLSRG.PANGTF04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_5.bam	SRR563636	@dbgap@:reads/SRP012000/SRS160276/SRX100058/SRR563636/SRR563636.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANGTF-04A-01D.VAF_GenomeWide_Relapse.png	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-04A-01D	DNA	EFO	SRS160276	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANGTF-04A-01D ING_AMLSRG.PANGTF04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANGTF04-1_1pA	SRX100058	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANGTF-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANGTF-04A-01D ING_AMLSRG.PANGTF04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_5.bam	SRR563636	@dbgap@:reads/SRP012000/SRS160276/SRX100058/SRR563636/SRR563636.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-04A-01D	DNA	EFO	SRS160276	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANGTF-04A-01D ING_AMLSRG.PANGTF04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANGTF04-1_1pA	SRX100058	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANGTF-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANGTF-04A-01D ING_AMLSRG.PANGTF04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_5.bam	SRR563636	@dbgap@:reads/SRP012000/SRS160276/SRX100058/SRR563636/SRR563636.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-04A-01D	DNA	EFO	SRS160276	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANGTF-04A-01D ING_AMLSRG.PANGTF04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANGTF04-1_1pA	SRX100058	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANGTF-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANGTF-04A-01D ING_AMLSRG.PANGTF04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_5.bam	SRR563636	@dbgap@:reads/SRP012000/SRS160276/SRX100058/SRR563636/SRR563636.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-01D	DNA	EFO	SRS287477	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANGTF-09A-01D ING_AMLSRG.PANGTF03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PANGTF03-1_1pA	SRX100057		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANGTF-09A-01D ING_AMLSRG.PANGTF03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_1.bam	SRR563747	@dbgap@:reads/SRP012000/SRS287477/SRX100057/SRR563747/SRR563747.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANGTF-09A-01D.VAF_Comparison.png	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-01D	DNA	EFO	SRS287477	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANGTF-09A-01D ING_AMLSRG.PANGTF03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PANGTF03-1_1pA	SRX100057		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANGTF-09A-01D ING_AMLSRG.PANGTF03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_1.bam	SRR563747	@dbgap@:reads/SRP012000/SRS287477/SRX100057/SRR563747/SRR563747.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANGTF-09A-01D.VAF_GenomeWide_Primary.png	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-01D	DNA	EFO	SRS287477	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANGTF-09A-01D ING_AMLSRG.PANGTF03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PANGTF03-1_1pA	SRX100057		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANGTF-09A-01D ING_AMLSRG.PANGTF03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_1.bam	SRR563747	@dbgap@:reads/SRP012000/SRS287477/SRX100057/SRR563747/SRR563747.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-01D	DNA	EFO	SRS287477	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANGTF-09A-01D ING_AMLSRG.PANGTF03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PANGTF03-1_1pA	SRX100057		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANGTF-09A-01D ING_AMLSRG.PANGTF03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_1.bam	SRR563747	@dbgap@:reads/SRP012000/SRS287477/SRX100057/SRR563747/SRR563747.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-09A-01D	DNA	EFO	SRS287477	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANGTF-09A-01D ING_AMLSRG.PANGTF03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PANGTF03-1_1pA	SRX100057		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANGTF-09A-01D ING_AMLSRG.PANGTF03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_1.bam	SRR563747	@dbgap@:reads/SRP012000/SRS287477/SRX100057/SRR563747/SRR563747.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANGTF-14A-01D ING_AMLSRG.PANGTF14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANGTF14-1_1pA	SRX100059	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANGTF-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANGTF-14A-01D ING_AMLSRG.PANGTF14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_2.bam	SRR563637	@dbgap@:reads/SRP012000/SRS160277/SRX100059/SRR563637/SRR563637.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANGTF-04A-01D.VAF_Comparison.png	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANGTF-14A-01D ING_AMLSRG.PANGTF14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANGTF14-1_1pA	SRX100059	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANGTF-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANGTF-14A-01D ING_AMLSRG.PANGTF14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_2.bam	SRR563637	@dbgap@:reads/SRP012000/SRS160277/SRX100059/SRR563637/SRR563637.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANGTF-04A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANGTF-14A-01D ING_AMLSRG.PANGTF14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANGTF14-1_1pA	SRX100059	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANGTF-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANGTF-14A-01D ING_AMLSRG.PANGTF14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_2.bam	SRR563637	@dbgap@:reads/SRP012000/SRS160277/SRX100059/SRR563637/SRR563637.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANGTF-09A-01D.VAF_Comparison.png	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANGTF-14A-01D ING_AMLSRG.PANGTF14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANGTF14-1_1pA	SRX100059	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANGTF-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANGTF-14A-01D ING_AMLSRG.PANGTF14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_2.bam	SRR563637	@dbgap@:reads/SRP012000/SRS160277/SRX100059/SRR563637/SRR563637.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANGTF-09A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANGTF-14A-01D ING_AMLSRG.PANGTF14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANGTF14-1_1pA	SRX100059	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANGTF-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANGTF-14A-01D ING_AMLSRG.PANGTF14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_2.bam	SRR563637	@dbgap@:reads/SRP012000/SRS160277/SRX100059/SRR563637/SRR563637.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANGTF-14A-01D ING_AMLSRG.PANGTF14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANGTF14-1_1pA	SRX100059	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANGTF-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANGTF-14A-01D ING_AMLSRG.PANGTF14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_2.bam	SRR563637	@dbgap@:reads/SRP012000/SRS160277/SRX100059/SRR563637/SRR563637.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANGTF-14A-01D ING_AMLSRG.PANGTF14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANGTF14-1_1pA	SRX100059	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANGTF-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANGTF-14A-01D ING_AMLSRG.PANGTF14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_2.bam	SRR563637	@dbgap@:reads/SRP012000/SRS160277/SRX100059/SRR563637/SRR563637.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PANGTF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANGTF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANGTF-14A-01D	DNA	EFO	SRS160277	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANGTF-14A-01D ING_AMLSRG.PANGTF14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANGTF14-1_1pA	SRX100059	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANGTF-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANGTF-14A-01D ING_AMLSRG.PANGTF14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_2.bam	SRR563637	@dbgap@:reads/SRP012000/SRS160277/SRX100059/SRR563637/SRR563637.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-01D	DNA	EFO	SRS160279	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLIZ-04A-01D ING_AMLSRG.PANLIZ04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	176	17.6	ING_AMLSRG.PANLIZ04-1_1pA	SRX155117	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANLIZ-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLIZ-04A-01D ING_AMLSRG.PANLIZ04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_6_1.bam	SRR566202	@dbgap@:reads/SRP012000/SRS160279/SRX155117/SRR566202/SRR566202.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANLIZ-04A-01D.VAF_Comparison.png	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-01D	DNA	EFO	SRS160279	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLIZ-04A-01D ING_AMLSRG.PANLIZ04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	176	17.6	ING_AMLSRG.PANLIZ04-1_1pA	SRX155117	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANLIZ-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLIZ-04A-01D ING_AMLSRG.PANLIZ04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_6_1.bam	SRR566202	@dbgap@:reads/SRP012000/SRS160279/SRX155117/SRR566202/SRR566202.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANLIZ-04A-01D.VAF_GenomeWide_Relapse.png	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-01D	DNA	EFO	SRS160279	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLIZ-04A-01D ING_AMLSRG.PANLIZ04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	176	17.6	ING_AMLSRG.PANLIZ04-1_1pA	SRX155117	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANLIZ-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLIZ-04A-01D ING_AMLSRG.PANLIZ04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_6_1.bam	SRR566202	@dbgap@:reads/SRP012000/SRS160279/SRX155117/SRR566202/SRR566202.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-01D	DNA	EFO	SRS160279	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLIZ-04A-01D ING_AMLSRG.PANLIZ04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	176	17.6	ING_AMLSRG.PANLIZ04-1_1pA	SRX155117	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANLIZ-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLIZ-04A-01D ING_AMLSRG.PANLIZ04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_6_1.bam	SRR566202	@dbgap@:reads/SRP012000/SRS160279/SRX155117/SRR566202/SRR566202.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-04A-01D	DNA	EFO	SRS160279	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLIZ-04A-01D ING_AMLSRG.PANLIZ04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	176	17.6	ING_AMLSRG.PANLIZ04-1_1pA	SRX155117	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANLIZ-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLIZ-04A-01D ING_AMLSRG.PANLIZ04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_6_1.bam	SRR566202	@dbgap@:reads/SRP012000/SRS160279/SRX155117/SRR566202/SRR566202.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-01D	DNA	EFO	SRS287479	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLIZ-09A-01D ING_AMLSRG.PANLIZ03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	168		ING_AMLSRG.PANLIZ03-1_1pA	SRX155121		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLIZ-09A-01D ING_AMLSRG.PANLIZ03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_3_1.bam	SRR568026	@dbgap@:reads/SRP012000/SRS287479/SRX155121/SRR568026/SRR568026.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANLIZ-09A-01D.VAF_Comparison.png	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-01D	DNA	EFO	SRS287479	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLIZ-09A-01D ING_AMLSRG.PANLIZ03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	168		ING_AMLSRG.PANLIZ03-1_1pA	SRX155121		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLIZ-09A-01D ING_AMLSRG.PANLIZ03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_3_1.bam	SRR568026	@dbgap@:reads/SRP012000/SRS287479/SRX155121/SRR568026/SRR568026.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANLIZ-09A-01D.VAF_GenomeWide_Primary.png	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-01D	DNA	EFO	SRS287479	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLIZ-09A-01D ING_AMLSRG.PANLIZ03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	168		ING_AMLSRG.PANLIZ03-1_1pA	SRX155121		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLIZ-09A-01D ING_AMLSRG.PANLIZ03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_3_1.bam	SRR568026	@dbgap@:reads/SRP012000/SRS287479/SRX155121/SRR568026/SRR568026.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-01D	DNA	EFO	SRS287479	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLIZ-09A-01D ING_AMLSRG.PANLIZ03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	168		ING_AMLSRG.PANLIZ03-1_1pA	SRX155121		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLIZ-09A-01D ING_AMLSRG.PANLIZ03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_3_1.bam	SRR568026	@dbgap@:reads/SRP012000/SRS287479/SRX155121/SRR568026/SRR568026.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-09A-01D	DNA	EFO	SRS287479	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLIZ-09A-01D ING_AMLSRG.PANLIZ03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	168		ING_AMLSRG.PANLIZ03-1_1pA	SRX155121		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLIZ-09A-01D ING_AMLSRG.PANLIZ03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_3_1.bam	SRR568026	@dbgap@:reads/SRP012000/SRS287479/SRX155121/SRR568026/SRR568026.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-01D	DNA	EFO	SRS160280	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLIZ-14A-01D ING_AMLSRG.PANLIZ14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	157	15.7	ING_AMLSRG.PANLIZ14-1_1pA	SRX155116	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANLIZ-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLIZ-14A-01D ING_AMLSRG.PANLIZ14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_4_1.bam	SRR566193	@dbgap@:reads/SRP012000/SRS160280/SRX155116/SRR566193/SRR566193.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANLIZ-04A-01D.VAF_Comparison.png	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-01D	DNA	EFO	SRS160280	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLIZ-14A-01D ING_AMLSRG.PANLIZ14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	157	15.7	ING_AMLSRG.PANLIZ14-1_1pA	SRX155116	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANLIZ-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLIZ-14A-01D ING_AMLSRG.PANLIZ14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_4_1.bam	SRR566193	@dbgap@:reads/SRP012000/SRS160280/SRX155116/SRR566193/SRR566193.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANLIZ-04A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-01D	DNA	EFO	SRS160280	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLIZ-14A-01D ING_AMLSRG.PANLIZ14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	157	15.7	ING_AMLSRG.PANLIZ14-1_1pA	SRX155116	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANLIZ-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLIZ-14A-01D ING_AMLSRG.PANLIZ14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_4_1.bam	SRR566193	@dbgap@:reads/SRP012000/SRS160280/SRX155116/SRR566193/SRR566193.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANLIZ-09A-01D.VAF_Comparison.png	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-01D	DNA	EFO	SRS160280	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLIZ-14A-01D ING_AMLSRG.PANLIZ14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	157	15.7	ING_AMLSRG.PANLIZ14-1_1pA	SRX155116	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANLIZ-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLIZ-14A-01D ING_AMLSRG.PANLIZ14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_4_1.bam	SRR566193	@dbgap@:reads/SRP012000/SRS160280/SRX155116/SRR566193/SRR566193.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANLIZ-09A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-01D	DNA	EFO	SRS160280	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLIZ-14A-01D ING_AMLSRG.PANLIZ14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	157	15.7	ING_AMLSRG.PANLIZ14-1_1pA	SRX155116	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANLIZ-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLIZ-14A-01D ING_AMLSRG.PANLIZ14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_4_1.bam	SRR566193	@dbgap@:reads/SRP012000/SRS160280/SRX155116/SRR566193/SRR566193.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-01D	DNA	EFO	SRS160280	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLIZ-14A-01D ING_AMLSRG.PANLIZ14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	157	15.7	ING_AMLSRG.PANLIZ14-1_1pA	SRX155116	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANLIZ-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLIZ-14A-01D ING_AMLSRG.PANLIZ14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_4_1.bam	SRR566193	@dbgap@:reads/SRP012000/SRS160280/SRX155116/SRR566193/SRR566193.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-01D	DNA	EFO	SRS160280	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLIZ-14A-01D ING_AMLSRG.PANLIZ14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	157	15.7	ING_AMLSRG.PANLIZ14-1_1pA	SRX155116	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANLIZ-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLIZ-14A-01D ING_AMLSRG.PANLIZ14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_4_1.bam	SRR566193	@dbgap@:reads/SRP012000/SRS160280/SRX155116/SRR566193/SRR566193.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PANLIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLIZ-14A-01D	DNA	EFO	SRS160280	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLIZ-14A-01D ING_AMLSRG.PANLIZ14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	157	15.7	ING_AMLSRG.PANLIZ14-1_1pA	SRX155116	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANLIZ-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLIZ-14A-01D ING_AMLSRG.PANLIZ14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_4_1.bam	SRR566193	@dbgap@:reads/SRP012000/SRS160280/SRX155116/SRR566193/SRR566193.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-04A-01D	DNA	EFO	SRS160282	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLRE-04A-01D ING_AMLSRG.PANLRE04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANLRE04-1_1pA	SRX100008	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANLRE-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLRE-04A-01D ING_AMLSRG.PANLRE04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110113_SN142_0313_B81B5HABXX_8.bam	SRR563981	@dbgap@:reads/SRP012000/SRS160282/SRX100008/SRR563981/SRR563981.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANLRE-04A-01D.VAF_Comparison.png	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-04A-01D	DNA	EFO	SRS160282	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLRE-04A-01D ING_AMLSRG.PANLRE04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANLRE04-1_1pA	SRX100008	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANLRE-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLRE-04A-01D ING_AMLSRG.PANLRE04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110113_SN142_0313_B81B5HABXX_8.bam	SRR563981	@dbgap@:reads/SRP012000/SRS160282/SRX100008/SRR563981/SRR563981.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANLRE-04A-01D.VAF_GenomeWide_Relapse.png	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-04A-01D	DNA	EFO	SRS160282	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLRE-04A-01D ING_AMLSRG.PANLRE04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANLRE04-1_1pA	SRX100008	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANLRE-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLRE-04A-01D ING_AMLSRG.PANLRE04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110113_SN142_0313_B81B5HABXX_8.bam	SRR563981	@dbgap@:reads/SRP012000/SRS160282/SRX100008/SRR563981/SRR563981.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-04A-01D	DNA	EFO	SRS160282	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLRE-04A-01D ING_AMLSRG.PANLRE04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANLRE04-1_1pA	SRX100008	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANLRE-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLRE-04A-01D ING_AMLSRG.PANLRE04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110113_SN142_0313_B81B5HABXX_8.bam	SRR563981	@dbgap@:reads/SRP012000/SRS160282/SRX100008/SRR563981/SRR563981.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-01D	DNA	EFO	SRS287481	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLRE-09A-01D ING_AMLSRG.PANLRE03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PANLRE03-1_1pA	SRX100024		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLRE-09A-01D ING_AMLSRG.PANLRE03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_3.bam	SRR564078	@dbgap@:reads/SRP012000/SRS287481/SRX100024/SRR564078/SRR564078.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANLRE-09A-01D.VAF_Comparison.png	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-01D	DNA	EFO	SRS287481	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLRE-09A-01D ING_AMLSRG.PANLRE03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PANLRE03-1_1pA	SRX100024		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLRE-09A-01D ING_AMLSRG.PANLRE03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_3.bam	SRR564078	@dbgap@:reads/SRP012000/SRS287481/SRX100024/SRR564078/SRR564078.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANLRE-09A-01D.VAF_GenomeWide_Primary.png	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-01D	DNA	EFO	SRS287481	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLRE-09A-01D ING_AMLSRG.PANLRE03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PANLRE03-1_1pA	SRX100024		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLRE-09A-01D ING_AMLSRG.PANLRE03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_3.bam	SRR564078	@dbgap@:reads/SRP012000/SRS287481/SRX100024/SRR564078/SRR564078.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-01D	DNA	EFO	SRS287481	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLRE-09A-01D ING_AMLSRG.PANLRE03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PANLRE03-1_1pA	SRX100024		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLRE-09A-01D ING_AMLSRG.PANLRE03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_3.bam	SRR564078	@dbgap@:reads/SRP012000/SRS287481/SRX100024/SRR564078/SRR564078.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-09A-01D	DNA	EFO	SRS287481	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLRE-09A-01D ING_AMLSRG.PANLRE03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PANLRE03-1_1pA	SRX100024		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLRE-09A-01D ING_AMLSRG.PANLRE03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_3.bam	SRR564078	@dbgap@:reads/SRP012000/SRS287481/SRX100024/SRR564078/SRR564078.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-14A-01D	DNA	EFO	SRS160283	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLRE-14A-01D ING_AMLSRG.PANLRE14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANLRE14-1_1pA	SRX100025	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANLRE-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLRE-14A-01D ING_AMLSRG.PANLRE14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_3.bam	SRR564076	@dbgap@:reads/SRP012000/SRS160283/SRX100025/SRR564076/SRR564076.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANLRE-04A-01D.VAF_Comparison.png	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-14A-01D	DNA	EFO	SRS160283	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLRE-14A-01D ING_AMLSRG.PANLRE14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANLRE14-1_1pA	SRX100025	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANLRE-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLRE-14A-01D ING_AMLSRG.PANLRE14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_3.bam	SRR564076	@dbgap@:reads/SRP012000/SRS160283/SRX100025/SRR564076/SRR564076.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANLRE-04A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-14A-01D	DNA	EFO	SRS160283	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLRE-14A-01D ING_AMLSRG.PANLRE14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANLRE14-1_1pA	SRX100025	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANLRE-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLRE-14A-01D ING_AMLSRG.PANLRE14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_3.bam	SRR564076	@dbgap@:reads/SRP012000/SRS160283/SRX100025/SRR564076/SRR564076.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANLRE-09A-01D.VAF_Comparison.png	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-14A-01D	DNA	EFO	SRS160283	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLRE-14A-01D ING_AMLSRG.PANLRE14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANLRE14-1_1pA	SRX100025	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANLRE-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLRE-14A-01D ING_AMLSRG.PANLRE14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_3.bam	SRR564076	@dbgap@:reads/SRP012000/SRS160283/SRX100025/SRR564076/SRR564076.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANLRE-09A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-14A-01D	DNA	EFO	SRS160283	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLRE-14A-01D ING_AMLSRG.PANLRE14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANLRE14-1_1pA	SRX100025	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANLRE-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLRE-14A-01D ING_AMLSRG.PANLRE14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_3.bam	SRR564076	@dbgap@:reads/SRP012000/SRS160283/SRX100025/SRR564076/SRR564076.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-14A-01D	DNA	EFO	SRS160283	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLRE-14A-01D ING_AMLSRG.PANLRE14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANLRE14-1_1pA	SRX100025	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANLRE-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLRE-14A-01D ING_AMLSRG.PANLRE14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_3.bam	SRR564076	@dbgap@:reads/SRP012000/SRS160283/SRX100025/SRR564076/SRR564076.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PANLRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANLRE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANLRE-14A-01D	DNA	EFO	SRS160283	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANLRE-14A-01D ING_AMLSRG.PANLRE14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANLRE14-1_1pA	SRX100025	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANLRE-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANLRE-14A-01D ING_AMLSRG.PANLRE14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_3.bam	SRR564076	@dbgap@:reads/SRP012000/SRS160283/SRX100025/SRR564076/SRR564076.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-04A-01D	DNA	EFO	SRS160285	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANSBH-04A-01D ING_AMLSRG.PANSBH04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANSBH04-1_1pA	SRX100040	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANSBH-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANSBH-04A-01D ING_AMLSRG.PANSBH04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_5.bam	SRR563876	@dbgap@:reads/SRP012000/SRS160285/SRX100040/SRR563876/SRR563876.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANSBH-04A-01D.VAF_Comparison.png	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-04A-01D	DNA	EFO	SRS160285	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANSBH-04A-01D ING_AMLSRG.PANSBH04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANSBH04-1_1pA	SRX100040	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANSBH-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANSBH-04A-01D ING_AMLSRG.PANSBH04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_5.bam	SRR563876	@dbgap@:reads/SRP012000/SRS160285/SRX100040/SRR563876/SRR563876.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANSBH-04A-01D.VAF_GenomeWide_Relapse.png	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-04A-01D	DNA	EFO	SRS160285	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANSBH-04A-01D ING_AMLSRG.PANSBH04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANSBH04-1_1pA	SRX100040	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANSBH-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANSBH-04A-01D ING_AMLSRG.PANSBH04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_5.bam	SRR563876	@dbgap@:reads/SRP012000/SRS160285/SRX100040/SRR563876/SRR563876.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-04A-01D	DNA	EFO	SRS160285	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANSBH-04A-01D ING_AMLSRG.PANSBH04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANSBH04-1_1pA	SRX100040	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANSBH-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANSBH-04A-01D ING_AMLSRG.PANSBH04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_5.bam	SRR563876	@dbgap@:reads/SRP012000/SRS160285/SRX100040/SRR563876/SRR563876.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-04A-01D	DNA	EFO	SRS160285	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANSBH-04A-01D ING_AMLSRG.PANSBH04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANSBH04-1_1pA	SRX100040	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANSBH-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANSBH-04A-01D ING_AMLSRG.PANSBH04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_5.bam	SRR563876	@dbgap@:reads/SRP012000/SRS160285/SRX100040/SRR563876/SRR563876.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-01D	DNA	EFO	SRS287484	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANSBH-09A-01D ING_AMLSRG.PANSBH03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PANSBH03-1_1pA	SRX100009		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANSBH-09A-01D ING_AMLSRG.PANSBH03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_4.bam	SRR563982	@dbgap@:reads/SRP012000/SRS287484/SRX100009/SRR563982/SRR563982.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANSBH-09A-01D.VAF_Comparison.png	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-01D	DNA	EFO	SRS287484	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANSBH-09A-01D ING_AMLSRG.PANSBH03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PANSBH03-1_1pA	SRX100009		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANSBH-09A-01D ING_AMLSRG.PANSBH03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_4.bam	SRR563982	@dbgap@:reads/SRP012000/SRS287484/SRX100009/SRR563982/SRR563982.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANSBH-09A-01D.VAF_GenomeWide_Primary.png	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-01D	DNA	EFO	SRS287484	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANSBH-09A-01D ING_AMLSRG.PANSBH03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PANSBH03-1_1pA	SRX100009		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANSBH-09A-01D ING_AMLSRG.PANSBH03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_4.bam	SRR563982	@dbgap@:reads/SRP012000/SRS287484/SRX100009/SRR563982/SRR563982.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-01D	DNA	EFO	SRS287484	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANSBH-09A-01D ING_AMLSRG.PANSBH03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PANSBH03-1_1pA	SRX100009		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANSBH-09A-01D ING_AMLSRG.PANSBH03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_4.bam	SRR563982	@dbgap@:reads/SRP012000/SRS287484/SRX100009/SRR563982/SRR563982.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-09A-01D	DNA	EFO	SRS287484	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANSBH-09A-01D ING_AMLSRG.PANSBH03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PANSBH03-1_1pA	SRX100009		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANSBH-09A-01D ING_AMLSRG.PANSBH03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_4.bam	SRR563982	@dbgap@:reads/SRP012000/SRS287484/SRX100009/SRR563982/SRR563982.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-01D	DNA	EFO	SRS160286	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANSBH-14A-01D ING_AMLSRG.PANSBH14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANSBH14-1_1pA	SRX100041	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANSBH-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANSBH-14A-01D ING_AMLSRG.PANSBH14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_6.bam	SRR563909	@dbgap@:reads/SRP012000/SRS160286/SRX100041/SRR563909/SRR563909.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANSBH-04A-01D.VAF_Comparison.png	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-01D	DNA	EFO	SRS160286	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANSBH-14A-01D ING_AMLSRG.PANSBH14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANSBH14-1_1pA	SRX100041	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANSBH-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANSBH-14A-01D ING_AMLSRG.PANSBH14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_6.bam	SRR563909	@dbgap@:reads/SRP012000/SRS160286/SRX100041/SRR563909/SRR563909.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANSBH-04A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-01D	DNA	EFO	SRS160286	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANSBH-14A-01D ING_AMLSRG.PANSBH14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANSBH14-1_1pA	SRX100041	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANSBH-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANSBH-14A-01D ING_AMLSRG.PANSBH14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_6.bam	SRR563909	@dbgap@:reads/SRP012000/SRS160286/SRX100041/SRR563909/SRR563909.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANSBH-09A-01D.VAF_Comparison.png	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-01D	DNA	EFO	SRS160286	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANSBH-14A-01D ING_AMLSRG.PANSBH14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANSBH14-1_1pA	SRX100041	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANSBH-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANSBH-14A-01D ING_AMLSRG.PANSBH14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_6.bam	SRR563909	@dbgap@:reads/SRP012000/SRS160286/SRX100041/SRR563909/SRR563909.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANSBH-09A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-01D	DNA	EFO	SRS160286	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANSBH-14A-01D ING_AMLSRG.PANSBH14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANSBH14-1_1pA	SRX100041	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANSBH-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANSBH-14A-01D ING_AMLSRG.PANSBH14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_6.bam	SRR563909	@dbgap@:reads/SRP012000/SRS160286/SRX100041/SRR563909/SRR563909.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-01D	DNA	EFO	SRS160286	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANSBH-14A-01D ING_AMLSRG.PANSBH14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANSBH14-1_1pA	SRX100041	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANSBH-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANSBH-14A-01D ING_AMLSRG.PANSBH14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_6.bam	SRR563909	@dbgap@:reads/SRP012000/SRS160286/SRX100041/SRR563909/SRR563909.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-01D	DNA	EFO	SRS160286	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANSBH-14A-01D ING_AMLSRG.PANSBH14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANSBH14-1_1pA	SRX100041	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANSBH-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANSBH-14A-01D ING_AMLSRG.PANSBH14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_6.bam	SRR563909	@dbgap@:reads/SRP012000/SRS160286/SRX100041/SRR563909/SRR563909.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PANSBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANSBH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANSBH-14A-01D	DNA	EFO	SRS160286	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANSBH-14A-01D ING_AMLSRG.PANSBH14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANSBH14-1_1pA	SRX100041	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANSBH-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANSBH-14A-01D ING_AMLSRG.PANSBH14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_6.bam	SRR563909	@dbgap@:reads/SRP012000/SRS160286/SRX100041/SRR563909/SRR563909.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PANTWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTWV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTWV-04A-01D	DNA	EFO	SRS160288	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANTWV-04A-01D ING_AMLSRG.PANTWV04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANTWV04-1_1pA	SRX100043	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANTWV-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANTWV-04A-01D ING_AMLSRG.PANTWV04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_1.bam	SRR563879	@dbgap@:reads/SRP012000/SRS160288/SRX100043/SRR563879/SRR563879.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANTWV-04A-01D.VAF_Comparison.png	3
TARGET-20-PANTWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTWV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTWV-04A-01D	DNA	EFO	SRS160288	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANTWV-04A-01D ING_AMLSRG.PANTWV04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANTWV04-1_1pA	SRX100043	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANTWV-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANTWV-04A-01D ING_AMLSRG.PANTWV04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_1.bam	SRR563879	@dbgap@:reads/SRP012000/SRS160288/SRX100043/SRR563879/SRR563879.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANTWV-04A-01D.VAF_GenomeWide_Relapse.png	3
TARGET-20-PANTWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTWV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTWV-04A-01D	DNA	EFO	SRS160288	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANTWV-04A-01D ING_AMLSRG.PANTWV04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANTWV04-1_1pA	SRX100043	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANTWV-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANTWV-04A-01D ING_AMLSRG.PANTWV04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_1.bam	SRR563879	@dbgap@:reads/SRP012000/SRS160288/SRX100043/SRR563879/SRR563879.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PANTWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTWV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTWV-04A-01D	DNA	EFO	SRS160288	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANTWV-04A-01D ING_AMLSRG.PANTWV04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANTWV04-1_1pA	SRX100043	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANTWV-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANTWV-04A-01D ING_AMLSRG.PANTWV04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_1.bam	SRR563879	@dbgap@:reads/SRP012000/SRS160288/SRX100043/SRR563879/SRR563879.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PANTWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTWV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTWV-04A-01D	DNA	EFO	SRS160288	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANTWV-04A-01D ING_AMLSRG.PANTWV04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANTWV04-1_1pA	SRX100043	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANTWV-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANTWV-04A-01D ING_AMLSRG.PANTWV04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_1.bam	SRR563879	@dbgap@:reads/SRP012000/SRS160288/SRX100043/SRR563879/SRR563879.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PANTWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTWV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTWV-09A-01D	DNA	EFO	SRS287486	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANTWV-09A-01D ING_AMLSRG.PANTWV03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PANTWV03-1_1pA	SRX100042		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANTWV-09A-01D ING_AMLSRG.PANTWV03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_7.bam	SRR563877	@dbgap@:reads/SRP012000/SRS287486/SRX100042/SRR563877/SRR563877.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANTWV-09A-01D.VAF_Comparison.png	3
TARGET-20-PANTWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTWV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTWV-09A-01D	DNA	EFO	SRS287486	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANTWV-09A-01D ING_AMLSRG.PANTWV03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PANTWV03-1_1pA	SRX100042		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANTWV-09A-01D ING_AMLSRG.PANTWV03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_7.bam	SRR563877	@dbgap@:reads/SRP012000/SRS287486/SRX100042/SRR563877/SRR563877.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANTWV-09A-01D.VAF_GenomeWide_Primary.png	3
TARGET-20-PANTWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTWV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTWV-09A-01D	DNA	EFO	SRS287486	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANTWV-09A-01D ING_AMLSRG.PANTWV03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PANTWV03-1_1pA	SRX100042		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANTWV-09A-01D ING_AMLSRG.PANTWV03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_7.bam	SRR563877	@dbgap@:reads/SRP012000/SRS287486/SRX100042/SRR563877/SRR563877.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PANTWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTWV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTWV-09A-01D	DNA	EFO	SRS287486	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANTWV-09A-01D ING_AMLSRG.PANTWV03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PANTWV03-1_1pA	SRX100042		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANTWV-09A-01D ING_AMLSRG.PANTWV03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_7.bam	SRR563877	@dbgap@:reads/SRP012000/SRS287486/SRX100042/SRR563877/SRR563877.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PANTWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTWV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTWV-09A-01D	DNA	EFO	SRS287486	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANTWV-09A-01D ING_AMLSRG.PANTWV03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PANTWV03-1_1pA	SRX100042		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANTWV-09A-01D ING_AMLSRG.PANTWV03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110119_SN601_0072_B819YPABXX_7.bam	SRR563877	@dbgap@:reads/SRP012000/SRS287486/SRX100042/SRR563877/SRR563877.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PANTWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTWV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTWV-14A-01D	DNA	EFO	SRS160289	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANTWV-14A-01D ING_AMLSRG.PANTWV14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANTWV14-1_1pA	SRX100010	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANTWV-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANTWV-14A-01D ING_AMLSRG.PANTWV14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_3.bam	SRR563910	@dbgap@:reads/SRP012000/SRS160289/SRX100010/SRR563910/SRR563910.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANTWV-04A-01D.VAF_Comparison.png	3
TARGET-20-PANTWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTWV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTWV-14A-01D	DNA	EFO	SRS160289	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANTWV-14A-01D ING_AMLSRG.PANTWV14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANTWV14-1_1pA	SRX100010	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANTWV-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANTWV-14A-01D ING_AMLSRG.PANTWV14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_3.bam	SRR563910	@dbgap@:reads/SRP012000/SRS160289/SRX100010/SRR563910/SRR563910.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANTWV-04A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PANTWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTWV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTWV-14A-01D	DNA	EFO	SRS160289	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANTWV-14A-01D ING_AMLSRG.PANTWV14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANTWV14-1_1pA	SRX100010	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANTWV-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANTWV-14A-01D ING_AMLSRG.PANTWV14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_3.bam	SRR563910	@dbgap@:reads/SRP012000/SRS160289/SRX100010/SRR563910/SRR563910.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANTWV-09A-01D.VAF_Comparison.png	3
TARGET-20-PANTWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTWV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTWV-14A-01D	DNA	EFO	SRS160289	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANTWV-14A-01D ING_AMLSRG.PANTWV14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANTWV14-1_1pA	SRX100010	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANTWV-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANTWV-14A-01D ING_AMLSRG.PANTWV14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_3.bam	SRR563910	@dbgap@:reads/SRP012000/SRS160289/SRX100010/SRR563910/SRR563910.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANTWV-09A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PANTWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTWV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTWV-14A-01D	DNA	EFO	SRS160289	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANTWV-14A-01D ING_AMLSRG.PANTWV14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANTWV14-1_1pA	SRX100010	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANTWV-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANTWV-14A-01D ING_AMLSRG.PANTWV14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_3.bam	SRR563910	@dbgap@:reads/SRP012000/SRS160289/SRX100010/SRR563910/SRR563910.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PANTWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTWV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTWV-14A-01D	DNA	EFO	SRS160289	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANTWV-14A-01D ING_AMLSRG.PANTWV14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANTWV14-1_1pA	SRX100010	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANTWV-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANTWV-14A-01D ING_AMLSRG.PANTWV14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_3.bam	SRR563910	@dbgap@:reads/SRP012000/SRS160289/SRX100010/SRR563910/SRR563910.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PANTWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTWV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTWV-14A-01D	DNA	EFO	SRS160289	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANTWV-14A-01D ING_AMLSRG.PANTWV14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANTWV14-1_1pA	SRX100010	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANTWV-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANTWV-14A-01D ING_AMLSRG.PANTWV14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_3.bam	SRR563910	@dbgap@:reads/SRP012000/SRS160289/SRX100010/SRR563910/SRR563910.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PANTWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANTWV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANTWV-14A-01D	DNA	EFO	SRS160289	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANTWV-14A-01D ING_AMLSRG.PANTWV14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANTWV14-1_1pA	SRX100010	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANTWV-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANTWV-14A-01D ING_AMLSRG.PANTWV14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_3.bam	SRR563910	@dbgap@:reads/SRP012000/SRS160289/SRX100010/SRR563910/SRR563910.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-04A-01D	DNA	EFO	SRS160291	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANVGP-04A-01D ING_AMLSRG.PANVGP04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANVGP04-1_1pA	SRX100011	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANVGP-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANVGP-04A-01D ING_AMLSRG.PANVGP04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_4.bam	SRR563985	@dbgap@:reads/SRP012000/SRS160291/SRX100011/SRR563985/SRR563985.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANVGP-04A-01D.VAF_Comparison.png	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-04A-01D	DNA	EFO	SRS160291	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANVGP-04A-01D ING_AMLSRG.PANVGP04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANVGP04-1_1pA	SRX100011	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANVGP-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANVGP-04A-01D ING_AMLSRG.PANVGP04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_4.bam	SRR563985	@dbgap@:reads/SRP012000/SRS160291/SRX100011/SRR563985/SRR563985.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANVGP-04A-01D.VAF_GenomeWide_Relapse.png	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-04A-01D	DNA	EFO	SRS160291	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANVGP-04A-01D ING_AMLSRG.PANVGP04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANVGP04-1_1pA	SRX100011	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANVGP-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANVGP-04A-01D ING_AMLSRG.PANVGP04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_4.bam	SRR563985	@dbgap@:reads/SRP012000/SRS160291/SRX100011/SRR563985/SRR563985.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-04A-01D	DNA	EFO	SRS160291	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANVGP-04A-01D ING_AMLSRG.PANVGP04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANVGP04-1_1pA	SRX100011	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANVGP-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANVGP-04A-01D ING_AMLSRG.PANVGP04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_4.bam	SRR563985	@dbgap@:reads/SRP012000/SRS160291/SRX100011/SRR563985/SRR563985.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-04A-01D	DNA	EFO	SRS160291	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANVGP-04A-01D ING_AMLSRG.PANVGP04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANVGP04-1_1pA	SRX100011	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANVGP-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANVGP-04A-01D ING_AMLSRG.PANVGP04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_4.bam	SRR563985	@dbgap@:reads/SRP012000/SRS160291/SRX100011/SRR563985/SRR563985.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-01D	DNA	EFO	SRS287487	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANVGP-09A-01D ING_AMLSRG.PANVGP03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PANVGP03-1_1pA	SRX100026		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANVGP-09A-01D ING_AMLSRG.PANVGP03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_4.bam	SRR564080	@dbgap@:reads/SRP012000/SRS287487/SRX100026/SRR564080/SRR564080.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANVGP-09A-01D.VAF_Comparison.png	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-01D	DNA	EFO	SRS287487	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANVGP-09A-01D ING_AMLSRG.PANVGP03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PANVGP03-1_1pA	SRX100026		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANVGP-09A-01D ING_AMLSRG.PANVGP03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_4.bam	SRR564080	@dbgap@:reads/SRP012000/SRS287487/SRX100026/SRR564080/SRR564080.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANVGP-09A-01D.VAF_GenomeWide_Primary.png	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-01D	DNA	EFO	SRS287487	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANVGP-09A-01D ING_AMLSRG.PANVGP03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PANVGP03-1_1pA	SRX100026		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANVGP-09A-01D ING_AMLSRG.PANVGP03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_4.bam	SRR564080	@dbgap@:reads/SRP012000/SRS287487/SRX100026/SRR564080/SRR564080.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-01D	DNA	EFO	SRS287487	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANVGP-09A-01D ING_AMLSRG.PANVGP03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PANVGP03-1_1pA	SRX100026		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANVGP-09A-01D ING_AMLSRG.PANVGP03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_4.bam	SRR564080	@dbgap@:reads/SRP012000/SRS287487/SRX100026/SRR564080/SRR564080.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-09A-01D	DNA	EFO	SRS287487	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANVGP-09A-01D ING_AMLSRG.PANVGP03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PANVGP03-1_1pA	SRX100026		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANVGP-09A-01D ING_AMLSRG.PANVGP03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_4.bam	SRR564080	@dbgap@:reads/SRP012000/SRS287487/SRX100026/SRR564080/SRR564080.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-01D	DNA	EFO	SRS160292	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANVGP-14A-01D ING_AMLSRG.PANVGP14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANVGP14-1_1pA	SRX100027	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANVGP-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANVGP-14A-01D ING_AMLSRG.PANVGP14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_5.bam	SRR564089	@dbgap@:reads/SRP012000/SRS160292/SRX100027/SRR564089/SRR564089.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANVGP-04A-01D.VAF_Comparison.png	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-01D	DNA	EFO	SRS160292	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANVGP-14A-01D ING_AMLSRG.PANVGP14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANVGP14-1_1pA	SRX100027	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANVGP-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANVGP-14A-01D ING_AMLSRG.PANVGP14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_5.bam	SRR564089	@dbgap@:reads/SRP012000/SRS160292/SRX100027/SRR564089/SRR564089.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANVGP-04A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-01D	DNA	EFO	SRS160292	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANVGP-14A-01D ING_AMLSRG.PANVGP14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANVGP14-1_1pA	SRX100027	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANVGP-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANVGP-14A-01D ING_AMLSRG.PANVGP14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_5.bam	SRR564089	@dbgap@:reads/SRP012000/SRS160292/SRX100027/SRR564089/SRR564089.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANVGP-09A-01D.VAF_Comparison.png	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-01D	DNA	EFO	SRS160292	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANVGP-14A-01D ING_AMLSRG.PANVGP14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANVGP14-1_1pA	SRX100027	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANVGP-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANVGP-14A-01D ING_AMLSRG.PANVGP14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_5.bam	SRR564089	@dbgap@:reads/SRP012000/SRS160292/SRX100027/SRR564089/SRR564089.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PANVGP-09A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-01D	DNA	EFO	SRS160292	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANVGP-14A-01D ING_AMLSRG.PANVGP14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANVGP14-1_1pA	SRX100027	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANVGP-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANVGP-14A-01D ING_AMLSRG.PANVGP14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_5.bam	SRR564089	@dbgap@:reads/SRP012000/SRS160292/SRX100027/SRR564089/SRR564089.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-01D	DNA	EFO	SRS160292	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANVGP-14A-01D ING_AMLSRG.PANVGP14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANVGP14-1_1pA	SRX100027	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANVGP-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANVGP-14A-01D ING_AMLSRG.PANVGP14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_5.bam	SRR564089	@dbgap@:reads/SRP012000/SRS160292/SRX100027/SRR564089/SRR564089.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-01D	DNA	EFO	SRS160292	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANVGP-14A-01D ING_AMLSRG.PANVGP14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANVGP14-1_1pA	SRX100027	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANVGP-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANVGP-14A-01D ING_AMLSRG.PANVGP14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_5.bam	SRR564089	@dbgap@:reads/SRP012000/SRS160292/SRX100027/SRR564089/SRR564089.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PANVGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PANVGP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PANVGP-14A-01D	DNA	EFO	SRS160292	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PANVGP-14A-01D ING_AMLSRG.PANVGP14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PANVGP14-1_1pA	SRX100027	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PANVGP-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PANVGP-14A-01D ING_AMLSRG.PANVGP14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_5.bam	SRR564089	@dbgap@:reads/SRP012000/SRS160292/SRX100027/SRR564089/SRR564089.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-01D	DNA	EFO	SRS160293	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARGVC-03A-01D ING_AMLSRG.PARGVC03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARGVC03-1_1pA	SRX100060	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARGVC-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARGVC-03A-01D ING_AMLSRG.PARGVC03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_5.bam	SRR563984	@dbgap@:reads/SRP012000/SRS160293/SRX100060/SRR563984/SRR563984.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARGVC-03A-01D.VAF_Comparison.png	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-01D	DNA	EFO	SRS160293	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARGVC-03A-01D ING_AMLSRG.PARGVC03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARGVC03-1_1pA	SRX100060	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARGVC-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARGVC-03A-01D ING_AMLSRG.PARGVC03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_5.bam	SRR563984	@dbgap@:reads/SRP012000/SRS160293/SRX100060/SRR563984/SRR563984.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARGVC-03A-01D.VAF_GenomeWide_Primary.png	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-01D	DNA	EFO	SRS160293	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARGVC-03A-01D ING_AMLSRG.PARGVC03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARGVC03-1_1pA	SRX100060	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARGVC-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARGVC-03A-01D ING_AMLSRG.PARGVC03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_5.bam	SRR563984	@dbgap@:reads/SRP012000/SRS160293/SRX100060/SRR563984/SRR563984.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-01D	DNA	EFO	SRS160293	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARGVC-03A-01D ING_AMLSRG.PARGVC03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARGVC03-1_1pA	SRX100060	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARGVC-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARGVC-03A-01D ING_AMLSRG.PARGVC03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_5.bam	SRR563984	@dbgap@:reads/SRP012000/SRS160293/SRX100060/SRR563984/SRR563984.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-03A-01D	DNA	EFO	SRS160293	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARGVC-03A-01D ING_AMLSRG.PARGVC03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARGVC03-1_1pA	SRX100060	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARGVC-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARGVC-03A-01D ING_AMLSRG.PARGVC03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_5.bam	SRR563984	@dbgap@:reads/SRP012000/SRS160293/SRX100060/SRR563984/SRR563984.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-04A-01D	DNA	EFO	SRS160294	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARGVC-04A-01D ING_AMLSRG.PARGVC04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARGVC04-1_1pA	SRX100061	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARGVC-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARGVC-04A-01D ING_AMLSRG.PARGVC04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_6.bam	SRR563639	@dbgap@:reads/SRP012000/SRS160294/SRX100061/SRR563639/SRR563639.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARGVC-04A-01D.VAF_Comparison.png	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-04A-01D	DNA	EFO	SRS160294	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARGVC-04A-01D ING_AMLSRG.PARGVC04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARGVC04-1_1pA	SRX100061	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARGVC-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARGVC-04A-01D ING_AMLSRG.PARGVC04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_6.bam	SRR563639	@dbgap@:reads/SRP012000/SRS160294/SRX100061/SRR563639/SRR563639.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARGVC-04A-01D.VAF_GenomeWide_Relapse.png	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-04A-01D	DNA	EFO	SRS160294	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARGVC-04A-01D ING_AMLSRG.PARGVC04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARGVC04-1_1pA	SRX100061	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARGVC-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARGVC-04A-01D ING_AMLSRG.PARGVC04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_6.bam	SRR563639	@dbgap@:reads/SRP012000/SRS160294/SRX100061/SRR563639/SRR563639.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-04A-01D	DNA	EFO	SRS160294	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARGVC-04A-01D ING_AMLSRG.PARGVC04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARGVC04-1_1pA	SRX100061	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARGVC-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARGVC-04A-01D ING_AMLSRG.PARGVC04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_6.bam	SRR563639	@dbgap@:reads/SRP012000/SRS160294/SRX100061/SRR563639/SRR563639.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-04A-01D	DNA	EFO	SRS160294	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARGVC-04A-01D ING_AMLSRG.PARGVC04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARGVC04-1_1pA	SRX100061	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARGVC-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARGVC-04A-01D ING_AMLSRG.PARGVC04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_6.bam	SRR563639	@dbgap@:reads/SRP012000/SRS160294/SRX100061/SRR563639/SRR563639.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-01D	DNA	EFO	SRS160295	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARGVC-14A-01D ING_AMLSRG.PARGVC14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARGVC14-1_1pA	SRX100062	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARGVC-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARGVC-14A-01D ING_AMLSRG.PARGVC14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_7.bam	SRR563748	@dbgap@:reads/SRP012000/SRS160295/SRX100062/SRR563748/SRR563748.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARGVC-03A-01D.VAF_Comparison.png	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-01D	DNA	EFO	SRS160295	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARGVC-14A-01D ING_AMLSRG.PARGVC14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARGVC14-1_1pA	SRX100062	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARGVC-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARGVC-14A-01D ING_AMLSRG.PARGVC14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_7.bam	SRR563748	@dbgap@:reads/SRP012000/SRS160295/SRX100062/SRR563748/SRR563748.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARGVC-03A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-01D	DNA	EFO	SRS160295	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARGVC-14A-01D ING_AMLSRG.PARGVC14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARGVC14-1_1pA	SRX100062	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARGVC-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARGVC-14A-01D ING_AMLSRG.PARGVC14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_7.bam	SRR563748	@dbgap@:reads/SRP012000/SRS160295/SRX100062/SRR563748/SRR563748.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARGVC-04A-01D.VAF_Comparison.png	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-01D	DNA	EFO	SRS160295	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARGVC-14A-01D ING_AMLSRG.PARGVC14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARGVC14-1_1pA	SRX100062	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARGVC-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARGVC-14A-01D ING_AMLSRG.PARGVC14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_7.bam	SRR563748	@dbgap@:reads/SRP012000/SRS160295/SRX100062/SRR563748/SRR563748.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARGVC-04A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-01D	DNA	EFO	SRS160295	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARGVC-14A-01D ING_AMLSRG.PARGVC14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARGVC14-1_1pA	SRX100062	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARGVC-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARGVC-14A-01D ING_AMLSRG.PARGVC14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_7.bam	SRR563748	@dbgap@:reads/SRP012000/SRS160295/SRX100062/SRR563748/SRR563748.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-01D	DNA	EFO	SRS160295	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARGVC-14A-01D ING_AMLSRG.PARGVC14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARGVC14-1_1pA	SRX100062	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARGVC-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARGVC-14A-01D ING_AMLSRG.PARGVC14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_7.bam	SRR563748	@dbgap@:reads/SRP012000/SRS160295/SRX100062/SRR563748/SRR563748.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-01D	DNA	EFO	SRS160295	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARGVC-14A-01D ING_AMLSRG.PARGVC14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARGVC14-1_1pA	SRX100062	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARGVC-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARGVC-14A-01D ING_AMLSRG.PARGVC14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_7.bam	SRR563748	@dbgap@:reads/SRP012000/SRS160295/SRX100062/SRR563748/SRR563748.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARGVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARGVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARGVC-14A-01D	DNA	EFO	SRS160295	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARGVC-14A-01D ING_AMLSRG.PARGVC14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARGVC14-1_1pA	SRX100062	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARGVC-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARGVC-14A-01D ING_AMLSRG.PARGVC14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_7.bam	SRR563748	@dbgap@:reads/SRP012000/SRS160295/SRX100062/SRR563748/SRR563748.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-04A-01D	DNA	EFO	SRS160297	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARIEG-04A-01D ING_AMLSRG.PARIEG04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARIEG04-1_1pA	SRX100064	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARIEG-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARIEG-04A-01D ING_AMLSRG.PARIEG04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_1.bam	SRR563641	@dbgap@:reads/SRP012000/SRS160297/SRX100064/SRR563641/SRR563641.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARIEG-04A-01D.VAF_Comparison.png	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-04A-01D	DNA	EFO	SRS160297	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARIEG-04A-01D ING_AMLSRG.PARIEG04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARIEG04-1_1pA	SRX100064	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARIEG-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARIEG-04A-01D ING_AMLSRG.PARIEG04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_1.bam	SRR563641	@dbgap@:reads/SRP012000/SRS160297/SRX100064/SRR563641/SRR563641.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARIEG-04A-01D.VAF_GenomeWide_Relapse.png	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-04A-01D	DNA	EFO	SRS160297	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARIEG-04A-01D ING_AMLSRG.PARIEG04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARIEG04-1_1pA	SRX100064	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARIEG-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARIEG-04A-01D ING_AMLSRG.PARIEG04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_1.bam	SRR563641	@dbgap@:reads/SRP012000/SRS160297/SRX100064/SRR563641/SRR563641.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-04A-01D	DNA	EFO	SRS160297	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARIEG-04A-01D ING_AMLSRG.PARIEG04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARIEG04-1_1pA	SRX100064	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARIEG-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARIEG-04A-01D ING_AMLSRG.PARIEG04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_1.bam	SRR563641	@dbgap@:reads/SRP012000/SRS160297/SRX100064/SRR563641/SRR563641.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-04A-01D	DNA	EFO	SRS160297	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARIEG-04A-01D ING_AMLSRG.PARIEG04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARIEG04-1_1pA	SRX100064	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARIEG-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARIEG-04A-01D ING_AMLSRG.PARIEG04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_1.bam	SRR563641	@dbgap@:reads/SRP012000/SRS160297/SRX100064/SRR563641/SRR563641.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-09A-01D	DNA	EFO	SRS287498	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARIEG-09A-01D ING_AMLSRG.PARIEG03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PARIEG03-1_1pA	SRX100063		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARIEG-09A-01D ING_AMLSRG.PARIEG03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_8.bam	SRR563640	@dbgap@:reads/SRP012000/SRS287498/SRX100063/SRR563640/SRR563640.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARIEG-09A-01D.VAF_Comparison.png	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-09A-01D	DNA	EFO	SRS287498	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARIEG-09A-01D ING_AMLSRG.PARIEG03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PARIEG03-1_1pA	SRX100063		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARIEG-09A-01D ING_AMLSRG.PARIEG03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_8.bam	SRR563640	@dbgap@:reads/SRP012000/SRS287498/SRX100063/SRR563640/SRR563640.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARIEG-09A-01D.VAF_GenomeWide_Primary.png	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-09A-01D	DNA	EFO	SRS287498	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARIEG-09A-01D ING_AMLSRG.PARIEG03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PARIEG03-1_1pA	SRX100063		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARIEG-09A-01D ING_AMLSRG.PARIEG03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_8.bam	SRR563640	@dbgap@:reads/SRP012000/SRS287498/SRX100063/SRR563640/SRR563640.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-09A-01D	DNA	EFO	SRS287498	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARIEG-09A-01D ING_AMLSRG.PARIEG03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PARIEG03-1_1pA	SRX100063		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARIEG-09A-01D ING_AMLSRG.PARIEG03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_8.bam	SRR563640	@dbgap@:reads/SRP012000/SRS287498/SRX100063/SRR563640/SRR563640.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-09A-01D	DNA	EFO	SRS287498	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARIEG-09A-01D ING_AMLSRG.PARIEG03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PARIEG03-1_1pA	SRX100063		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARIEG-09A-01D ING_AMLSRG.PARIEG03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0040_B81AC8ABXX_8.bam	SRR563640	@dbgap@:reads/SRP012000/SRS287498/SRX100063/SRR563640/SRR563640.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-01D	DNA	EFO	SRS160298	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARIEG-14A-01D ING_AMLSRG.PARIEG14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARIEG14-1_1pA	SRX100012	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARIEG-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARIEG-14A-01D ING_AMLSRG.PARIEG14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_2.bam	SRR564019	@dbgap@:reads/SRP012000/SRS160298/SRX100012/SRR564019/SRR564019.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARIEG-04A-01D.VAF_Comparison.png	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-01D	DNA	EFO	SRS160298	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARIEG-14A-01D ING_AMLSRG.PARIEG14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARIEG14-1_1pA	SRX100012	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARIEG-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARIEG-14A-01D ING_AMLSRG.PARIEG14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_2.bam	SRR564019	@dbgap@:reads/SRP012000/SRS160298/SRX100012/SRR564019/SRR564019.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARIEG-04A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-01D	DNA	EFO	SRS160298	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARIEG-14A-01D ING_AMLSRG.PARIEG14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARIEG14-1_1pA	SRX100012	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARIEG-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARIEG-14A-01D ING_AMLSRG.PARIEG14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_2.bam	SRR564019	@dbgap@:reads/SRP012000/SRS160298/SRX100012/SRR564019/SRR564019.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARIEG-09A-01D.VAF_Comparison.png	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-01D	DNA	EFO	SRS160298	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARIEG-14A-01D ING_AMLSRG.PARIEG14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARIEG14-1_1pA	SRX100012	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARIEG-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARIEG-14A-01D ING_AMLSRG.PARIEG14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_2.bam	SRR564019	@dbgap@:reads/SRP012000/SRS160298/SRX100012/SRR564019/SRR564019.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARIEG-09A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-01D	DNA	EFO	SRS160298	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARIEG-14A-01D ING_AMLSRG.PARIEG14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARIEG14-1_1pA	SRX100012	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARIEG-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARIEG-14A-01D ING_AMLSRG.PARIEG14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_2.bam	SRR564019	@dbgap@:reads/SRP012000/SRS160298/SRX100012/SRR564019/SRR564019.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-01D	DNA	EFO	SRS160298	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARIEG-14A-01D ING_AMLSRG.PARIEG14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARIEG14-1_1pA	SRX100012	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARIEG-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARIEG-14A-01D ING_AMLSRG.PARIEG14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_2.bam	SRR564019	@dbgap@:reads/SRP012000/SRS160298/SRX100012/SRR564019/SRR564019.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-01D	DNA	EFO	SRS160298	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARIEG-14A-01D ING_AMLSRG.PARIEG14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARIEG14-1_1pA	SRX100012	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARIEG-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARIEG-14A-01D ING_AMLSRG.PARIEG14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_2.bam	SRR564019	@dbgap@:reads/SRP012000/SRS160298/SRX100012/SRR564019/SRR564019.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARIEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARIEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARIEG-14A-01D	DNA	EFO	SRS160298	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARIEG-14A-01D ING_AMLSRG.PARIEG14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARIEG14-1_1pA	SRX100012	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARIEG-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARIEG-14A-01D ING_AMLSRG.PARIEG14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_2.bam	SRR564019	@dbgap@:reads/SRP012000/SRS160298/SRX100012/SRR564019/SRR564019.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-04A-01D	DNA	EFO	SRS160300	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUCB-04A-01D ING_AMLSRG.PARUCB04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUCB04-1_1pA	SRX100013	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUCB-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUCB-04A-01D ING_AMLSRG.PARUCB04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_6.bam	SRR563986	@dbgap@:reads/SRP012000/SRS160300/SRX100013/SRR563986/SRR563986.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARUCB-04A-01D.VAF_Comparison.png	3
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-04A-01D	DNA	EFO	SRS160300	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUCB-04A-01D ING_AMLSRG.PARUCB04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUCB04-1_1pA	SRX100013	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUCB-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUCB-04A-01D ING_AMLSRG.PARUCB04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_6.bam	SRR563986	@dbgap@:reads/SRP012000/SRS160300/SRX100013/SRR563986/SRR563986.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARUCB-04A-01D.VAF_GenomeWide_Relapse.png	3
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-04A-01D	DNA	EFO	SRS160300	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUCB-04A-01D ING_AMLSRG.PARUCB04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUCB04-1_1pA	SRX100013	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUCB-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUCB-04A-01D ING_AMLSRG.PARUCB04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_6.bam	SRR563986	@dbgap@:reads/SRP012000/SRS160300/SRX100013/SRR563986/SRR563986.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-04A-01D	DNA	EFO	SRS160300	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUCB-04A-01D ING_AMLSRG.PARUCB04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUCB04-1_1pA	SRX100013	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUCB-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUCB-04A-01D ING_AMLSRG.PARUCB04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_6.bam	SRR563986	@dbgap@:reads/SRP012000/SRS160300/SRX100013/SRR563986/SRR563986.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-04A-01D	DNA	EFO	SRS160300	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUCB-04A-01D ING_AMLSRG.PARUCB04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUCB04-1_1pA	SRX100013	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUCB-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUCB-04A-01D ING_AMLSRG.PARUCB04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_6.bam	SRR563986	@dbgap@:reads/SRP012000/SRS160300/SRX100013/SRR563986/SRR563986.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-09A-01D	DNA	EFO	SRS287502	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUCB-09A-01D ING_AMLSRG.PARUCB03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PARUCB03-1_1pA	SRX100028		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUCB-09A-01D ING_AMLSRG.PARUCB03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_3.bam	SRR564081	@dbgap@:reads/SRP012000/SRS287502/SRX100028/SRR564081/SRR564081.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARUCB-09A-01D.VAF_Comparison.png	3
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-09A-01D	DNA	EFO	SRS287502	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUCB-09A-01D ING_AMLSRG.PARUCB03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PARUCB03-1_1pA	SRX100028		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUCB-09A-01D ING_AMLSRG.PARUCB03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_3.bam	SRR564081	@dbgap@:reads/SRP012000/SRS287502/SRX100028/SRR564081/SRR564081.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARUCB-09A-01D.VAF_GenomeWide_Primary.png	3
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-09A-01D	DNA	EFO	SRS287502	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUCB-09A-01D ING_AMLSRG.PARUCB03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PARUCB03-1_1pA	SRX100028		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUCB-09A-01D ING_AMLSRG.PARUCB03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_3.bam	SRR564081	@dbgap@:reads/SRP012000/SRS287502/SRX100028/SRR564081/SRR564081.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-09A-01D	DNA	EFO	SRS287502	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUCB-09A-01D ING_AMLSRG.PARUCB03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PARUCB03-1_1pA	SRX100028		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUCB-09A-01D ING_AMLSRG.PARUCB03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_3.bam	SRR564081	@dbgap@:reads/SRP012000/SRS287502/SRX100028/SRR564081/SRR564081.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-09A-01D	DNA	EFO	SRS287502	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUCB-09A-01D ING_AMLSRG.PARUCB03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PARUCB03-1_1pA	SRX100028		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUCB-09A-01D ING_AMLSRG.PARUCB03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_3.bam	SRR564081	@dbgap@:reads/SRP012000/SRS287502/SRX100028/SRR564081/SRR564081.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-14A-01D	DNA	EFO	SRS160301	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUCB-14A-01D ING_AMLSRG.PARUCB14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUCB14-1_1pA	SRX100029	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUCB-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUCB-14A-01D ING_AMLSRG.PARUCB14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_3.bam	SRR564082	@dbgap@:reads/SRP012000/SRS160301/SRX100029/SRR564082/SRR564082.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARUCB-04A-01D.VAF_Comparison.png	3
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-14A-01D	DNA	EFO	SRS160301	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUCB-14A-01D ING_AMLSRG.PARUCB14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUCB14-1_1pA	SRX100029	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUCB-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUCB-14A-01D ING_AMLSRG.PARUCB14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_3.bam	SRR564082	@dbgap@:reads/SRP012000/SRS160301/SRX100029/SRR564082/SRR564082.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARUCB-04A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-14A-01D	DNA	EFO	SRS160301	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUCB-14A-01D ING_AMLSRG.PARUCB14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUCB14-1_1pA	SRX100029	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUCB-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUCB-14A-01D ING_AMLSRG.PARUCB14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_3.bam	SRR564082	@dbgap@:reads/SRP012000/SRS160301/SRX100029/SRR564082/SRR564082.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARUCB-09A-01D.VAF_Comparison.png	3
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-14A-01D	DNA	EFO	SRS160301	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUCB-14A-01D ING_AMLSRG.PARUCB14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUCB14-1_1pA	SRX100029	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUCB-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUCB-14A-01D ING_AMLSRG.PARUCB14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_3.bam	SRR564082	@dbgap@:reads/SRP012000/SRS160301/SRX100029/SRR564082/SRR564082.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARUCB-09A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-14A-01D	DNA	EFO	SRS160301	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUCB-14A-01D ING_AMLSRG.PARUCB14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUCB14-1_1pA	SRX100029	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUCB-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUCB-14A-01D ING_AMLSRG.PARUCB14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_3.bam	SRR564082	@dbgap@:reads/SRP012000/SRS160301/SRX100029/SRR564082/SRR564082.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-14A-01D	DNA	EFO	SRS160301	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUCB-14A-01D ING_AMLSRG.PARUCB14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUCB14-1_1pA	SRX100029	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUCB-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUCB-14A-01D ING_AMLSRG.PARUCB14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_3.bam	SRR564082	@dbgap@:reads/SRP012000/SRS160301/SRX100029/SRR564082/SRR564082.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-14A-01D	DNA	EFO	SRS160301	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUCB-14A-01D ING_AMLSRG.PARUCB14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUCB14-1_1pA	SRX100029	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUCB-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUCB-14A-01D ING_AMLSRG.PARUCB14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_3.bam	SRR564082	@dbgap@:reads/SRP012000/SRS160301/SRX100029/SRR564082/SRR564082.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARUCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUCB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUCB-14A-01D	DNA	EFO	SRS160301	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUCB-14A-01D ING_AMLSRG.PARUCB14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUCB14-1_1pA	SRX100029	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUCB-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUCB-14A-01D ING_AMLSRG.PARUCB14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_3.bam	SRR564082	@dbgap@:reads/SRP012000/SRS160301/SRX100029/SRR564082/SRR564082.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01D	DNA	EFO	SRS160303	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUNX-04A-01D ING_AMLSRG.PARUNX04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUNX04-1_1pA	SRX100072	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUNX-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUNX-04A-01D ING_AMLSRG.PARUNX04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_4.bam	SRR563881	@dbgap@:reads/SRP012000/SRS160303/SRX100072/SRR563881/SRR563881.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARUNX-04A-01D.VAF_Comparison.png	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01D	DNA	EFO	SRS160303	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUNX-04A-01D ING_AMLSRG.PARUNX04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUNX04-1_1pA	SRX100072	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUNX-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUNX-04A-01D ING_AMLSRG.PARUNX04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_4.bam	SRR563881	@dbgap@:reads/SRP012000/SRS160303/SRX100072/SRR563881/SRR563881.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARUNX-04A-01D.VAF_GenomeWide_Relapse.png	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01D	DNA	EFO	SRS160303	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUNX-04A-01D ING_AMLSRG.PARUNX04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUNX04-1_1pA	SRX100072	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUNX-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUNX-04A-01D ING_AMLSRG.PARUNX04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_4.bam	SRR563881	@dbgap@:reads/SRP012000/SRS160303/SRX100072/SRR563881/SRR563881.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01D	DNA	EFO	SRS160303	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUNX-04A-01D ING_AMLSRG.PARUNX04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUNX04-1_1pA	SRX100072	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUNX-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUNX-04A-01D ING_AMLSRG.PARUNX04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_4.bam	SRR563881	@dbgap@:reads/SRP012000/SRS160303/SRX100072/SRR563881/SRR563881.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-04A-01D	DNA	EFO	SRS160303	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUNX-04A-01D ING_AMLSRG.PARUNX04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUNX04-1_1pA	SRX100072	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUNX-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUNX-04A-01D ING_AMLSRG.PARUNX04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_4.bam	SRR563881	@dbgap@:reads/SRP012000/SRS160303/SRX100072/SRR563881/SRR563881.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-01D	DNA	EFO	SRS287503	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUNX-09A-01D ING_AMLSRG.PARUNX03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PARUNX03-1_1pA	SRX100071		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUNX-09A-01D ING_AMLSRG.PARUNX03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_4.bam	SRR563880	@dbgap@:reads/SRP012000/SRS287503/SRX100071/SRR563880/SRR563880.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARUNX-09A-01D.VAF_Comparison.png	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-01D	DNA	EFO	SRS287503	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUNX-09A-01D ING_AMLSRG.PARUNX03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PARUNX03-1_1pA	SRX100071		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUNX-09A-01D ING_AMLSRG.PARUNX03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_4.bam	SRR563880	@dbgap@:reads/SRP012000/SRS287503/SRX100071/SRR563880/SRR563880.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARUNX-09A-01D.VAF_GenomeWide_Primary.png	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-01D	DNA	EFO	SRS287503	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUNX-09A-01D ING_AMLSRG.PARUNX03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PARUNX03-1_1pA	SRX100071		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUNX-09A-01D ING_AMLSRG.PARUNX03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_4.bam	SRR563880	@dbgap@:reads/SRP012000/SRS287503/SRX100071/SRR563880/SRR563880.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-01D	DNA	EFO	SRS287503	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUNX-09A-01D ING_AMLSRG.PARUNX03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PARUNX03-1_1pA	SRX100071		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUNX-09A-01D ING_AMLSRG.PARUNX03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_4.bam	SRR563880	@dbgap@:reads/SRP012000/SRS287503/SRX100071/SRR563880/SRR563880.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-09A-01D	DNA	EFO	SRS287503	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUNX-09A-01D ING_AMLSRG.PARUNX03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PARUNX03-1_1pA	SRX100071		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUNX-09A-01D ING_AMLSRG.PARUNX03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_4.bam	SRR563880	@dbgap@:reads/SRP012000/SRS287503/SRX100071/SRR563880/SRR563880.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-01D	DNA	EFO	SRS160304	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUNX-14A-01D ING_AMLSRG.PARUNX14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUNX14-1_1pA	SRX100036	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUNX-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUNX-14A-01D ING_AMLSRG.PARUNX14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_5.bam	SRR563878	@dbgap@:reads/SRP012000/SRS160304/SRX100036/SRR563878/SRR563878.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARUNX-04A-01D.VAF_Comparison.png	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-01D	DNA	EFO	SRS160304	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUNX-14A-01D ING_AMLSRG.PARUNX14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUNX14-1_1pA	SRX100036	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUNX-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUNX-14A-01D ING_AMLSRG.PARUNX14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_5.bam	SRR563878	@dbgap@:reads/SRP012000/SRS160304/SRX100036/SRR563878/SRR563878.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARUNX-04A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-01D	DNA	EFO	SRS160304	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUNX-14A-01D ING_AMLSRG.PARUNX14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUNX14-1_1pA	SRX100036	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUNX-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUNX-14A-01D ING_AMLSRG.PARUNX14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_5.bam	SRR563878	@dbgap@:reads/SRP012000/SRS160304/SRX100036/SRR563878/SRR563878.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARUNX-09A-01D.VAF_Comparison.png	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-01D	DNA	EFO	SRS160304	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUNX-14A-01D ING_AMLSRG.PARUNX14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUNX14-1_1pA	SRX100036	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUNX-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUNX-14A-01D ING_AMLSRG.PARUNX14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_5.bam	SRR563878	@dbgap@:reads/SRP012000/SRS160304/SRX100036/SRR563878/SRR563878.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARUNX-09A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-01D	DNA	EFO	SRS160304	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUNX-14A-01D ING_AMLSRG.PARUNX14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUNX14-1_1pA	SRX100036	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUNX-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUNX-14A-01D ING_AMLSRG.PARUNX14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_5.bam	SRR563878	@dbgap@:reads/SRP012000/SRS160304/SRX100036/SRR563878/SRR563878.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-01D	DNA	EFO	SRS160304	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUNX-14A-01D ING_AMLSRG.PARUNX14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUNX14-1_1pA	SRX100036	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUNX-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUNX-14A-01D ING_AMLSRG.PARUNX14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_5.bam	SRR563878	@dbgap@:reads/SRP012000/SRS160304/SRX100036/SRR563878/SRR563878.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-01D	DNA	EFO	SRS160304	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUNX-14A-01D ING_AMLSRG.PARUNX14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUNX14-1_1pA	SRX100036	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUNX-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUNX-14A-01D ING_AMLSRG.PARUNX14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_5.bam	SRR563878	@dbgap@:reads/SRP012000/SRS160304/SRX100036/SRR563878/SRR563878.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARUNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARUNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARUNX-14A-01D	DNA	EFO	SRS160304	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARUNX-14A-01D ING_AMLSRG.PARUNX14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARUNX14-1_1pA	SRX100036	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARUNX-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARUNX-14A-01D ING_AMLSRG.PARUNX14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_5.bam	SRR563878	@dbgap@:reads/SRP012000/SRS160304/SRX100036/SRR563878/SRR563878.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-03A-01D	DNA	EFO	SRS160305	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARVUA-03A-01D ING_AMLSRG.PARVUA03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARVUA03-1_1pA	SRX100020	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARVUA-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARVUA-03A-01D ING_AMLSRG.PARVUA03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_6.bam	SRR563882	@dbgap@:reads/SRP012000/SRS160305/SRX100020/SRR563882/SRR563882.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARVUA-03A-01D.VAF_Comparison.png	3
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-03A-01D	DNA	EFO	SRS160305	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARVUA-03A-01D ING_AMLSRG.PARVUA03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARVUA03-1_1pA	SRX100020	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARVUA-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARVUA-03A-01D ING_AMLSRG.PARVUA03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_6.bam	SRR563882	@dbgap@:reads/SRP012000/SRS160305/SRX100020/SRR563882/SRR563882.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARVUA-03A-01D.VAF_GenomeWide_Primary.png	3
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-03A-01D	DNA	EFO	SRS160305	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARVUA-03A-01D ING_AMLSRG.PARVUA03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARVUA03-1_1pA	SRX100020	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARVUA-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARVUA-03A-01D ING_AMLSRG.PARVUA03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_6.bam	SRR563882	@dbgap@:reads/SRP012000/SRS160305/SRX100020/SRR563882/SRR563882.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-03A-01D	DNA	EFO	SRS160305	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARVUA-03A-01D ING_AMLSRG.PARVUA03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARVUA03-1_1pA	SRX100020	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARVUA-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARVUA-03A-01D ING_AMLSRG.PARVUA03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_6.bam	SRR563882	@dbgap@:reads/SRP012000/SRS160305/SRX100020/SRR563882/SRR563882.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-03A-01D	DNA	EFO	SRS160305	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARVUA-03A-01D ING_AMLSRG.PARVUA03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARVUA03-1_1pA	SRX100020	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARVUA-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARVUA-03A-01D ING_AMLSRG.PARVUA03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_6.bam	SRR563882	@dbgap@:reads/SRP012000/SRS160305/SRX100020/SRR563882/SRR563882.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-04A-01D	DNA	EFO	SRS160306	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARVUA-04A-01D ING_AMLSRG.PARVUA04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARVUA04-1_1pA	SRX100037	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARVUA-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARVUA-04A-01D ING_AMLSRG.PARVUA04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_7.bam	SRR564090	@dbgap@:reads/SRP012000/SRS160306/SRX100037/SRR564090/SRR564090.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARVUA-04A-01D.VAF_Comparison.png	3
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-04A-01D	DNA	EFO	SRS160306	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARVUA-04A-01D ING_AMLSRG.PARVUA04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARVUA04-1_1pA	SRX100037	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARVUA-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARVUA-04A-01D ING_AMLSRG.PARVUA04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_7.bam	SRR564090	@dbgap@:reads/SRP012000/SRS160306/SRX100037/SRR564090/SRR564090.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARVUA-04A-01D.VAF_GenomeWide_Relapse.png	3
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-04A-01D	DNA	EFO	SRS160306	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARVUA-04A-01D ING_AMLSRG.PARVUA04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARVUA04-1_1pA	SRX100037	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARVUA-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARVUA-04A-01D ING_AMLSRG.PARVUA04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_7.bam	SRR564090	@dbgap@:reads/SRP012000/SRS160306/SRX100037/SRR564090/SRR564090.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-04A-01D	DNA	EFO	SRS160306	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARVUA-04A-01D ING_AMLSRG.PARVUA04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARVUA04-1_1pA	SRX100037	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARVUA-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARVUA-04A-01D ING_AMLSRG.PARVUA04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_7.bam	SRR564090	@dbgap@:reads/SRP012000/SRS160306/SRX100037/SRR564090/SRR564090.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-04A-01D	DNA	EFO	SRS160306	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARVUA-04A-01D ING_AMLSRG.PARVUA04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARVUA04-1_1pA	SRX100037	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARVUA-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARVUA-04A-01D ING_AMLSRG.PARVUA04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_7.bam	SRR564090	@dbgap@:reads/SRP012000/SRS160306/SRX100037/SRR564090/SRR564090.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-14A-01D	DNA	EFO	SRS160307	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARVUA-14A-01D ING_AMLSRG.PARVUA14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARVUA14-1_1pA	SRX100021	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARVUA-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARVUA-14A-01D ING_AMLSRG.PARVUA14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_8.bam	SRR563980	@dbgap@:reads/SRP012000/SRS160307/SRX100021/SRR563980/SRR563980.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARVUA-03A-01D.VAF_Comparison.png	3
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-14A-01D	DNA	EFO	SRS160307	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARVUA-14A-01D ING_AMLSRG.PARVUA14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARVUA14-1_1pA	SRX100021	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARVUA-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARVUA-14A-01D ING_AMLSRG.PARVUA14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_8.bam	SRR563980	@dbgap@:reads/SRP012000/SRS160307/SRX100021/SRR563980/SRR563980.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARVUA-03A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-14A-01D	DNA	EFO	SRS160307	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARVUA-14A-01D ING_AMLSRG.PARVUA14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARVUA14-1_1pA	SRX100021	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARVUA-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARVUA-14A-01D ING_AMLSRG.PARVUA14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_8.bam	SRR563980	@dbgap@:reads/SRP012000/SRS160307/SRX100021/SRR563980/SRR563980.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARVUA-04A-01D.VAF_Comparison.png	3
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-14A-01D	DNA	EFO	SRS160307	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARVUA-14A-01D ING_AMLSRG.PARVUA14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARVUA14-1_1pA	SRX100021	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARVUA-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARVUA-14A-01D ING_AMLSRG.PARVUA14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_8.bam	SRR563980	@dbgap@:reads/SRP012000/SRS160307/SRX100021/SRR563980/SRR563980.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARVUA-04A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-14A-01D	DNA	EFO	SRS160307	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARVUA-14A-01D ING_AMLSRG.PARVUA14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARVUA14-1_1pA	SRX100021	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARVUA-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARVUA-14A-01D ING_AMLSRG.PARVUA14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_8.bam	SRR563980	@dbgap@:reads/SRP012000/SRS160307/SRX100021/SRR563980/SRR563980.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-14A-01D	DNA	EFO	SRS160307	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARVUA-14A-01D ING_AMLSRG.PARVUA14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARVUA14-1_1pA	SRX100021	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARVUA-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARVUA-14A-01D ING_AMLSRG.PARVUA14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_8.bam	SRR563980	@dbgap@:reads/SRP012000/SRS160307/SRX100021/SRR563980/SRR563980.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-14A-01D	DNA	EFO	SRS160307	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARVUA-14A-01D ING_AMLSRG.PARVUA14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARVUA14-1_1pA	SRX100021	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARVUA-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARVUA-14A-01D ING_AMLSRG.PARVUA14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_8.bam	SRR563980	@dbgap@:reads/SRP012000/SRS160307/SRX100021/SRR563980/SRR563980.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARVUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARVUA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARVUA-14A-01D	DNA	EFO	SRS160307	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARVUA-14A-01D ING_AMLSRG.PARVUA14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARVUA14-1_1pA	SRX100021	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARVUA-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARVUA-14A-01D ING_AMLSRG.PARVUA14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110114_SN580_0039_A81AD9ABXX_8.bam	SRR563980	@dbgap@:reads/SRP012000/SRS160307/SRX100021/SRR563980/SRR563980.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARWAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWAS-09A-01D	DNA	EFO	SRS287505	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWAS-09A-01D ING_AMLSRG.PARWAS03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PARWAS03-1_1pA	SRX100053		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWAS-09A-01D ING_AMLSRG.PARWAS03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_5.bam	SRR563987	@dbgap@:reads/SRP012000/SRS287505/SRX100053/SRR563987/SRR563987.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARWAS-09A-01D.VAF_Comparison.png	3
TARGET-20-PARWAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWAS-09A-01D	DNA	EFO	SRS287505	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWAS-09A-01D ING_AMLSRG.PARWAS03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PARWAS03-1_1pA	SRX100053		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWAS-09A-01D ING_AMLSRG.PARWAS03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_5.bam	SRR563987	@dbgap@:reads/SRP012000/SRS287505/SRX100053/SRR563987/SRR563987.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARWAS-09A-01D.VAF_GenomeWide_Primary.png	3
TARGET-20-PARWAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWAS-09A-01D	DNA	EFO	SRS287505	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWAS-09A-01D ING_AMLSRG.PARWAS03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PARWAS03-1_1pA	SRX100053		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWAS-09A-01D ING_AMLSRG.PARWAS03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_5.bam	SRR563987	@dbgap@:reads/SRP012000/SRS287505/SRX100053/SRR563987/SRR563987.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PARWAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWAS-09A-01D	DNA	EFO	SRS287505	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWAS-09A-01D ING_AMLSRG.PARWAS03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PARWAS03-1_1pA	SRX100053		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWAS-09A-01D ING_AMLSRG.PARWAS03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_5.bam	SRR563987	@dbgap@:reads/SRP012000/SRS287505/SRX100053/SRR563987/SRR563987.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PARWAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWAS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWAS-09A-01D	DNA	EFO	SRS287505	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWAS-09A-01D ING_AMLSRG.PARWAS03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PARWAS03-1_1pA	SRX100053		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWAS-09A-01D ING_AMLSRG.PARWAS03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_5.bam	SRR563987	@dbgap@:reads/SRP012000/SRS287505/SRX100053/SRR563987/SRR563987.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARWAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWAS-14A-01D	DNA	EFO	SRS160309	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWAS-14A-01D ING_AMLSRG.PARWAS14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARWAS14-1_1pA	SRX100054	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARWAS-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWAS-14A-01D ING_AMLSRG.PARWAS14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_6.bam	SRR564084	@dbgap@:reads/SRP012000/SRS160309/SRX100054/SRR564084/SRR564084.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARWAS-09A-01D.VAF_Comparison.png	3
TARGET-20-PARWAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWAS-14A-01D	DNA	EFO	SRS160309	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWAS-14A-01D ING_AMLSRG.PARWAS14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARWAS14-1_1pA	SRX100054	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARWAS-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWAS-14A-01D ING_AMLSRG.PARWAS14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_6.bam	SRR564084	@dbgap@:reads/SRP012000/SRS160309/SRX100054/SRR564084/SRR564084.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARWAS-09A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PARWAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWAS-14A-01D	DNA	EFO	SRS160309	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWAS-14A-01D ING_AMLSRG.PARWAS14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARWAS14-1_1pA	SRX100054	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARWAS-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWAS-14A-01D ING_AMLSRG.PARWAS14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_6.bam	SRR564084	@dbgap@:reads/SRP012000/SRS160309/SRX100054/SRR564084/SRR564084.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PARWAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWAS-14A-01D	DNA	EFO	SRS160309	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWAS-14A-01D ING_AMLSRG.PARWAS14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARWAS14-1_1pA	SRX100054	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARWAS-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWAS-14A-01D ING_AMLSRG.PARWAS14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_6.bam	SRR564084	@dbgap@:reads/SRP012000/SRS160309/SRX100054/SRR564084/SRR564084.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PARWAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWAS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWAS-14A-01D	DNA	EFO	SRS160309	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWAS-14A-01D ING_AMLSRG.PARWAS14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARWAS14-1_1pA	SRX100054	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARWAS-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWAS-14A-01D ING_AMLSRG.PARWAS14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_6.bam	SRR564084	@dbgap@:reads/SRP012000/SRS160309/SRX100054/SRR564084/SRR564084.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-04A-01D	DNA	EFO	SRS160311	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWXU-04A-01D ING_AMLSRG.PARWXU04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARWXU04-1_1pA	SRX100056	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARWXU-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWXU-04A-01D ING_AMLSRG.PARWXU04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_7.bam	SRR564083	@dbgap@:reads/SRP012000/SRS160311/SRX100056/SRR564083/SRR564083.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARWXU-04A-01D.VAF_Comparison.png	3
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-04A-01D	DNA	EFO	SRS160311	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWXU-04A-01D ING_AMLSRG.PARWXU04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARWXU04-1_1pA	SRX100056	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARWXU-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWXU-04A-01D ING_AMLSRG.PARWXU04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_7.bam	SRR564083	@dbgap@:reads/SRP012000/SRS160311/SRX100056/SRR564083/SRR564083.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARWXU-04A-01D.VAF_GenomeWide_Relapse.png	3
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-04A-01D	DNA	EFO	SRS160311	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWXU-04A-01D ING_AMLSRG.PARWXU04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARWXU04-1_1pA	SRX100056	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARWXU-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWXU-04A-01D ING_AMLSRG.PARWXU04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_7.bam	SRR564083	@dbgap@:reads/SRP012000/SRS160311/SRX100056/SRR564083/SRR564083.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-04A-01D	DNA	EFO	SRS160311	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWXU-04A-01D ING_AMLSRG.PARWXU04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARWXU04-1_1pA	SRX100056	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARWXU-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWXU-04A-01D ING_AMLSRG.PARWXU04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_7.bam	SRR564083	@dbgap@:reads/SRP012000/SRS160311/SRX100056/SRR564083/SRR564083.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-04A-01D	DNA	EFO	SRS160311	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWXU-04A-01D ING_AMLSRG.PARWXU04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARWXU04-1_1pA	SRX100056	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARWXU-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWXU-04A-01D ING_AMLSRG.PARWXU04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_7.bam	SRR564083	@dbgap@:reads/SRP012000/SRS160311/SRX100056/SRR564083/SRR564083.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-09A-01D	DNA	EFO	SRS287506	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWXU-09A-01D ING_AMLSRG.PARWXU03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PARWXU03-1_1pA	SRX100055		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWXU-09A-01D ING_AMLSRG.PARWXU03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_7.bam	SRR563993	@dbgap@:reads/SRP012000/SRS287506/SRX100055/SRR563993/SRR563993.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARWXU-09A-01D.VAF_Comparison.png	3
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-09A-01D	DNA	EFO	SRS287506	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWXU-09A-01D ING_AMLSRG.PARWXU03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PARWXU03-1_1pA	SRX100055		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWXU-09A-01D ING_AMLSRG.PARWXU03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_7.bam	SRR563993	@dbgap@:reads/SRP012000/SRS287506/SRX100055/SRR563993/SRR563993.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARWXU-09A-01D.VAF_GenomeWide_Primary.png	3
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-09A-01D	DNA	EFO	SRS287506	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWXU-09A-01D ING_AMLSRG.PARWXU03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PARWXU03-1_1pA	SRX100055		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWXU-09A-01D ING_AMLSRG.PARWXU03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_7.bam	SRR563993	@dbgap@:reads/SRP012000/SRS287506/SRX100055/SRR563993/SRR563993.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-09A-01D	DNA	EFO	SRS287506	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWXU-09A-01D ING_AMLSRG.PARWXU03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PARWXU03-1_1pA	SRX100055		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWXU-09A-01D ING_AMLSRG.PARWXU03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_7.bam	SRR563993	@dbgap@:reads/SRP012000/SRS287506/SRX100055/SRR563993/SRR563993.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-09A-01D	DNA	EFO	SRS287506	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWXU-09A-01D ING_AMLSRG.PARWXU03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PARWXU03-1_1pA	SRX100055		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWXU-09A-01D ING_AMLSRG.PARWXU03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_7.bam	SRR563993	@dbgap@:reads/SRP012000/SRS287506/SRX100055/SRR563993/SRR563993.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-14A-01D	DNA	EFO	SRS160312	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWXU-14A-01D ING_AMLSRG.PARWXU14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARWXU14-1_1pA	SRX100022	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARWXU-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWXU-14A-01D ING_AMLSRG.PARWXU14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_5.bam	SRR563642	@dbgap@:reads/SRP012000/SRS160312/SRX100022/SRR563642/SRR563642.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARWXU-04A-01D.VAF_Comparison.png	3
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-14A-01D	DNA	EFO	SRS160312	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWXU-14A-01D ING_AMLSRG.PARWXU14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARWXU14-1_1pA	SRX100022	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARWXU-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWXU-14A-01D ING_AMLSRG.PARWXU14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_5.bam	SRR563642	@dbgap@:reads/SRP012000/SRS160312/SRX100022/SRR563642/SRR563642.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARWXU-04A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-14A-01D	DNA	EFO	SRS160312	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWXU-14A-01D ING_AMLSRG.PARWXU14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARWXU14-1_1pA	SRX100022	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARWXU-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWXU-14A-01D ING_AMLSRG.PARWXU14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_5.bam	SRR563642	@dbgap@:reads/SRP012000/SRS160312/SRX100022/SRR563642/SRR563642.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARWXU-09A-01D.VAF_Comparison.png	3
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-14A-01D	DNA	EFO	SRS160312	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWXU-14A-01D ING_AMLSRG.PARWXU14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARWXU14-1_1pA	SRX100022	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARWXU-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWXU-14A-01D ING_AMLSRG.PARWXU14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_5.bam	SRR563642	@dbgap@:reads/SRP012000/SRS160312/SRX100022/SRR563642/SRR563642.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PARWXU-09A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-14A-01D	DNA	EFO	SRS160312	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWXU-14A-01D ING_AMLSRG.PARWXU14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARWXU14-1_1pA	SRX100022	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARWXU-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWXU-14A-01D ING_AMLSRG.PARWXU14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_5.bam	SRR563642	@dbgap@:reads/SRP012000/SRS160312/SRX100022/SRR563642/SRR563642.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-14A-01D	DNA	EFO	SRS160312	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWXU-14A-01D ING_AMLSRG.PARWXU14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARWXU14-1_1pA	SRX100022	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARWXU-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWXU-14A-01D ING_AMLSRG.PARWXU14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_5.bam	SRR563642	@dbgap@:reads/SRP012000/SRS160312/SRX100022/SRR563642/SRR563642.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-14A-01D	DNA	EFO	SRS160312	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWXU-14A-01D ING_AMLSRG.PARWXU14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARWXU14-1_1pA	SRX100022	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARWXU-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWXU-14A-01D ING_AMLSRG.PARWXU14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_5.bam	SRR563642	@dbgap@:reads/SRP012000/SRS160312/SRX100022/SRR563642/SRR563642.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PARWXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PARWXU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PARWXU-14A-01D	DNA	EFO	SRS160312	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PARWXU-14A-01D ING_AMLSRG.PARWXU14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PARWXU14-1_1pA	SRX100022	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PARWXU-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PARWXU-14A-01D ING_AMLSRG.PARWXU14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_5.bam	SRR563642	@dbgap@:reads/SRP012000/SRS160312/SRX100022/SRR563642/SRR563642.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PASCGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGC-03A-01D	DNA	EFO	SRS160313	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASCGC-03A-01D ING_AMLSRG.PASCGC03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASCGC03-1_1pA	SRX100038	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASCGC-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASCGC-03A-01D ING_AMLSRG.PASCGC03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_8.bam	SRR563669	@dbgap@:reads/SRP012000/SRS160313/SRX100038/SRR563669/SRR563669.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PASCGC-03A-01D.VAF_Comparison.png	3
TARGET-20-PASCGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGC-03A-01D	DNA	EFO	SRS160313	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASCGC-03A-01D ING_AMLSRG.PASCGC03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASCGC03-1_1pA	SRX100038	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASCGC-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASCGC-03A-01D ING_AMLSRG.PASCGC03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_8.bam	SRR563669	@dbgap@:reads/SRP012000/SRS160313/SRX100038/SRR563669/SRR563669.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PASCGC-03A-01D.VAF_GenomeWide_Primary.png	3
TARGET-20-PASCGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGC-03A-01D	DNA	EFO	SRS160313	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASCGC-03A-01D ING_AMLSRG.PASCGC03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASCGC03-1_1pA	SRX100038	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASCGC-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASCGC-03A-01D ING_AMLSRG.PASCGC03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_8.bam	SRR563669	@dbgap@:reads/SRP012000/SRS160313/SRX100038/SRR563669/SRR563669.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PASCGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGC-03A-01D	DNA	EFO	SRS160313	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASCGC-03A-01D ING_AMLSRG.PASCGC03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASCGC03-1_1pA	SRX100038	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASCGC-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASCGC-03A-01D ING_AMLSRG.PASCGC03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_8.bam	SRR563669	@dbgap@:reads/SRP012000/SRS160313/SRX100038/SRR563669/SRR563669.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PASCGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGC-03A-01D	DNA	EFO	SRS160313	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASCGC-03A-01D ING_AMLSRG.PASCGC03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASCGC03-1_1pA	SRX100038	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASCGC-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASCGC-03A-01D ING_AMLSRG.PASCGC03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110106_SN580_0038_B81853ABXX_8.bam	SRR563669	@dbgap@:reads/SRP012000/SRS160313/SRX100038/SRR563669/SRR563669.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PASCGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGC-04A-01D	DNA	EFO	SRS160314	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASCGC-04A-01D ING_AMLSRG.PASCGC04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASCGC04-1_1pA	SRX100023	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASCGC-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASCGC-04A-01D ING_AMLSRG.PASCGC04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_8.bam	SRR563644	@dbgap@:reads/SRP012000/SRS160314/SRX100023/SRR563644/SRR563644.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PASCGC-04A-01D.VAF_Comparison.png	3
TARGET-20-PASCGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGC-04A-01D	DNA	EFO	SRS160314	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASCGC-04A-01D ING_AMLSRG.PASCGC04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASCGC04-1_1pA	SRX100023	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASCGC-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASCGC-04A-01D ING_AMLSRG.PASCGC04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_8.bam	SRR563644	@dbgap@:reads/SRP012000/SRS160314/SRX100023/SRR563644/SRR563644.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PASCGC-04A-01D.VAF_GenomeWide_Relapse.png	3
TARGET-20-PASCGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGC-04A-01D	DNA	EFO	SRS160314	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASCGC-04A-01D ING_AMLSRG.PASCGC04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASCGC04-1_1pA	SRX100023	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASCGC-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASCGC-04A-01D ING_AMLSRG.PASCGC04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_8.bam	SRR563644	@dbgap@:reads/SRP012000/SRS160314/SRX100023/SRR563644/SRR563644.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PASCGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGC-04A-01D	DNA	EFO	SRS160314	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASCGC-04A-01D ING_AMLSRG.PASCGC04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASCGC04-1_1pA	SRX100023	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASCGC-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASCGC-04A-01D ING_AMLSRG.PASCGC04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_8.bam	SRR563644	@dbgap@:reads/SRP012000/SRS160314/SRX100023/SRR563644/SRR563644.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PASCGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGC-10A-01D	DNA	EFO	SRS160315	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASCGC-10A-01D ING_AMLSRG.PASCGC10-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASCGC10-1_1pA	SRX100039	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASCGC-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASCGC-10A-01D ING_AMLSRG.PASCGC10-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_7.bam	SRR563643	@dbgap@:reads/SRP012000/SRS160315/SRX100039/SRR563643/SRR563643.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PASCGC-03A-01D.VAF_Comparison.png	3
TARGET-20-PASCGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGC-10A-01D	DNA	EFO	SRS160315	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASCGC-10A-01D ING_AMLSRG.PASCGC10-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASCGC10-1_1pA	SRX100039	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASCGC-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASCGC-10A-01D ING_AMLSRG.PASCGC10-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_7.bam	SRR563643	@dbgap@:reads/SRP012000/SRS160315/SRX100039/SRR563643/SRR563643.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PASCGC-03A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PASCGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGC-10A-01D	DNA	EFO	SRS160315	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASCGC-10A-01D ING_AMLSRG.PASCGC10-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASCGC10-1_1pA	SRX100039	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASCGC-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASCGC-10A-01D ING_AMLSRG.PASCGC10-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_7.bam	SRR563643	@dbgap@:reads/SRP012000/SRS160315/SRX100039/SRR563643/SRR563643.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PASCGC-04A-01D.VAF_Comparison.png	3
TARGET-20-PASCGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGC-10A-01D	DNA	EFO	SRS160315	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASCGC-10A-01D ING_AMLSRG.PASCGC10-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASCGC10-1_1pA	SRX100039	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASCGC-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASCGC-10A-01D ING_AMLSRG.PASCGC10-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_7.bam	SRR563643	@dbgap@:reads/SRP012000/SRS160315/SRX100039/SRR563643/SRR563643.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PASCGC-04A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PASCGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGC-10A-01D	DNA	EFO	SRS160315	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASCGC-10A-01D ING_AMLSRG.PASCGC10-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASCGC10-1_1pA	SRX100039	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASCGC-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASCGC-10A-01D ING_AMLSRG.PASCGC10-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_7.bam	SRR563643	@dbgap@:reads/SRP012000/SRS160315/SRX100039/SRR563643/SRR563643.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PASCGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGC-10A-01D	DNA	EFO	SRS160315	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASCGC-10A-01D ING_AMLSRG.PASCGC10-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASCGC10-1_1pA	SRX100039	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASCGC-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASCGC-10A-01D ING_AMLSRG.PASCGC10-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_7.bam	SRR563643	@dbgap@:reads/SRP012000/SRS160315/SRX100039/SRR563643/SRR563643.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PASCGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASCGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASCGC-10A-01D	DNA	EFO	SRS160315	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASCGC-10A-01D ING_AMLSRG.PASCGC10-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASCGC10-1_1pA	SRX100039	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASCGC-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASCGC-10A-01D ING_AMLSRG.PASCGC10-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_7.bam	SRR563643	@dbgap@:reads/SRP012000/SRS160315/SRX100039/SRR563643/SRR563643.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-04A-01D	DNA	EFO	SRS160317	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASFEW-04A-01D ING_AMLSRG.PASFEW04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASFEW04-1_1pA	SRX100074	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASFEW-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASFEW-04A-01D ING_AMLSRG.PASFEW04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110127_SN580_0044_A81ADRABXX_6.bam	SRR563988	@dbgap@:reads/SRP012000/SRS160317/SRX100074/SRR563988/SRR563988.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PASFEW-04A-01D.VAF_Comparison.png	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-04A-01D	DNA	EFO	SRS160317	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASFEW-04A-01D ING_AMLSRG.PASFEW04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASFEW04-1_1pA	SRX100074	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASFEW-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASFEW-04A-01D ING_AMLSRG.PASFEW04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110127_SN580_0044_A81ADRABXX_6.bam	SRR563988	@dbgap@:reads/SRP012000/SRS160317/SRX100074/SRR563988/SRR563988.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PASFEW-04A-01D.VAF_GenomeWide_Relapse.png	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-04A-01D	DNA	EFO	SRS160317	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASFEW-04A-01D ING_AMLSRG.PASFEW04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASFEW04-1_1pA	SRX100074	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASFEW-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASFEW-04A-01D ING_AMLSRG.PASFEW04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110127_SN580_0044_A81ADRABXX_6.bam	SRR563988	@dbgap@:reads/SRP012000/SRS160317/SRX100074/SRR563988/SRR563988.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-04A-01D	DNA	EFO	SRS160317	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASFEW-04A-01D ING_AMLSRG.PASFEW04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASFEW04-1_1pA	SRX100074	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASFEW-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASFEW-04A-01D ING_AMLSRG.PASFEW04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110127_SN580_0044_A81ADRABXX_6.bam	SRR563988	@dbgap@:reads/SRP012000/SRS160317/SRX100074/SRR563988/SRR563988.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-04A-01D	DNA	EFO	SRS160317	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASFEW-04A-01D ING_AMLSRG.PASFEW04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASFEW04-1_1pA	SRX100074	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASFEW-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASFEW-04A-01D ING_AMLSRG.PASFEW04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110127_SN580_0044_A81ADRABXX_6.bam	SRR563988	@dbgap@:reads/SRP012000/SRS160317/SRX100074/SRR563988/SRR563988.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-01D	DNA	EFO	SRS287509	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASFEW-09A-01D ING_AMLSRG.PASFEW03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PASFEW03-1_1pA	SRX100073		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASFEW-09A-01D ING_AMLSRG.PASFEW03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_8.bam	SRR564140	@dbgap@:reads/SRP012000/SRS287509/SRX100073/SRR564140/SRR564140.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PASFEW-09A-01D.VAF_Comparison.png	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-01D	DNA	EFO	SRS287509	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASFEW-09A-01D ING_AMLSRG.PASFEW03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PASFEW03-1_1pA	SRX100073		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASFEW-09A-01D ING_AMLSRG.PASFEW03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_8.bam	SRR564140	@dbgap@:reads/SRP012000/SRS287509/SRX100073/SRR564140/SRR564140.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PASFEW-09A-01D.VAF_GenomeWide_Primary.png	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-01D	DNA	EFO	SRS287509	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASFEW-09A-01D ING_AMLSRG.PASFEW03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PASFEW03-1_1pA	SRX100073		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASFEW-09A-01D ING_AMLSRG.PASFEW03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_8.bam	SRR564140	@dbgap@:reads/SRP012000/SRS287509/SRX100073/SRR564140/SRR564140.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-01D	DNA	EFO	SRS287509	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASFEW-09A-01D ING_AMLSRG.PASFEW03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PASFEW03-1_1pA	SRX100073		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASFEW-09A-01D ING_AMLSRG.PASFEW03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_8.bam	SRR564140	@dbgap@:reads/SRP012000/SRS287509/SRX100073/SRR564140/SRR564140.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-09A-01D	DNA	EFO	SRS287509	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASFEW-09A-01D ING_AMLSRG.PASFEW03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PASFEW03-1_1pA	SRX100073		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASFEW-09A-01D ING_AMLSRG.PASFEW03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_8.bam	SRR564140	@dbgap@:reads/SRP012000/SRS287509/SRX100073/SRR564140/SRR564140.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASFEW-14A-01D ING_AMLSRG.PASFEW14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASFEW14-1_1pA	SRX100075	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASFEW-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASFEW-14A-01D ING_AMLSRG.PASFEW14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110127_SN580_0044_A81ADRABXX_7.bam	SRR564086	@dbgap@:reads/SRP012000/SRS160318/SRX100075/SRR564086/SRR564086.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PASFEW-04A-01D.VAF_Comparison.png	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASFEW-14A-01D ING_AMLSRG.PASFEW14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASFEW14-1_1pA	SRX100075	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASFEW-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASFEW-14A-01D ING_AMLSRG.PASFEW14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110127_SN580_0044_A81ADRABXX_7.bam	SRR564086	@dbgap@:reads/SRP012000/SRS160318/SRX100075/SRR564086/SRR564086.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PASFEW-04A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASFEW-14A-01D ING_AMLSRG.PASFEW14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASFEW14-1_1pA	SRX100075	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASFEW-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASFEW-14A-01D ING_AMLSRG.PASFEW14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110127_SN580_0044_A81ADRABXX_7.bam	SRR564086	@dbgap@:reads/SRP012000/SRS160318/SRX100075/SRR564086/SRR564086.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PASFEW-09A-01D.VAF_Comparison.png	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASFEW-14A-01D ING_AMLSRG.PASFEW14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASFEW14-1_1pA	SRX100075	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASFEW-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASFEW-14A-01D ING_AMLSRG.PASFEW14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110127_SN580_0044_A81ADRABXX_7.bam	SRR564086	@dbgap@:reads/SRP012000/SRS160318/SRX100075/SRR564086/SRR564086.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PASFEW-09A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASFEW-14A-01D ING_AMLSRG.PASFEW14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASFEW14-1_1pA	SRX100075	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASFEW-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASFEW-14A-01D ING_AMLSRG.PASFEW14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110127_SN580_0044_A81ADRABXX_7.bam	SRR564086	@dbgap@:reads/SRP012000/SRS160318/SRX100075/SRR564086/SRR564086.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASFEW-14A-01D ING_AMLSRG.PASFEW14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASFEW14-1_1pA	SRX100075	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASFEW-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASFEW-14A-01D ING_AMLSRG.PASFEW14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110127_SN580_0044_A81ADRABXX_7.bam	SRR564086	@dbgap@:reads/SRP012000/SRS160318/SRX100075/SRR564086/SRR564086.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASFEW-14A-01D ING_AMLSRG.PASFEW14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASFEW14-1_1pA	SRX100075	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASFEW-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASFEW-14A-01D ING_AMLSRG.PASFEW14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110127_SN580_0044_A81ADRABXX_7.bam	SRR564086	@dbgap@:reads/SRP012000/SRS160318/SRX100075/SRR564086/SRR564086.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PASFEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASFEW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASFEW-14A-01D	DNA	EFO	SRS160318	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASFEW-14A-01D ING_AMLSRG.PASFEW14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASFEW14-1_1pA	SRX100075	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASFEW-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASFEW-14A-01D ING_AMLSRG.PASFEW14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110127_SN580_0044_A81ADRABXX_7.bam	SRR564086	@dbgap@:reads/SRP012000/SRS160318/SRX100075/SRR564086/SRR564086.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01D	DNA	EFO	SRS287513	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASRTP-09A-01D ING_AMLSRG.PASRTP03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PASRTP03-1_1pA	SRX100076		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASRTP-09A-01D ING_AMLSRG.PASRTP03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110127_SN580_0044_A81ADRABXX_8.bam	SRR564020	@dbgap@:reads/SRP012000/SRS287513/SRX100076/SRR564020/SRR564020.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PASRTP-09A-01D.VAF_Comparison.png	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01D	DNA	EFO	SRS287513	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASRTP-09A-01D ING_AMLSRG.PASRTP03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PASRTP03-1_1pA	SRX100076		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASRTP-09A-01D ING_AMLSRG.PASRTP03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110127_SN580_0044_A81ADRABXX_8.bam	SRR564020	@dbgap@:reads/SRP012000/SRS287513/SRX100076/SRR564020/SRR564020.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PASRTP-09A-01D.VAF_GenomeWide_Primary.png	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01D	DNA	EFO	SRS287513	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASRTP-09A-01D ING_AMLSRG.PASRTP03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PASRTP03-1_1pA	SRX100076		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASRTP-09A-01D ING_AMLSRG.PASRTP03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110127_SN580_0044_A81ADRABXX_8.bam	SRR564020	@dbgap@:reads/SRP012000/SRS287513/SRX100076/SRR564020/SRR564020.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01D	DNA	EFO	SRS287513	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASRTP-09A-01D ING_AMLSRG.PASRTP03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PASRTP03-1_1pA	SRX100076		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASRTP-09A-01D ING_AMLSRG.PASRTP03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110127_SN580_0044_A81ADRABXX_8.bam	SRR564020	@dbgap@:reads/SRP012000/SRS287513/SRX100076/SRR564020/SRR564020.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-09A-01D	DNA	EFO	SRS287513	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASRTP-09A-01D ING_AMLSRG.PASRTP03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PASRTP03-1_1pA	SRX100076		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASRTP-09A-01D ING_AMLSRG.PASRTP03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110127_SN580_0044_A81ADRABXX_8.bam	SRR564020	@dbgap@:reads/SRP012000/SRS287513/SRX100076/SRR564020/SRR564020.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-14A-01D	DNA	EFO	SRS160321	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASRTP-14A-01D ING_AMLSRG.PASRTP14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASRTP14-1_1pA	SRX100044	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASRTP-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASRTP-14A-01D ING_AMLSRG.PASRTP14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_6.bam	SRR563883	@dbgap@:reads/SRP012000/SRS160321/SRX100044/SRR563883/SRR563883.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PASRTP-09A-01D.VAF_Comparison.png	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-14A-01D	DNA	EFO	SRS160321	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASRTP-14A-01D ING_AMLSRG.PASRTP14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASRTP14-1_1pA	SRX100044	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASRTP-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASRTP-14A-01D ING_AMLSRG.PASRTP14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_6.bam	SRR563883	@dbgap@:reads/SRP012000/SRS160321/SRX100044/SRR563883/SRR563883.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PASRTP-09A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-14A-01D	DNA	EFO	SRS160321	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASRTP-14A-01D ING_AMLSRG.PASRTP14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASRTP14-1_1pA	SRX100044	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASRTP-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASRTP-14A-01D ING_AMLSRG.PASRTP14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_6.bam	SRR563883	@dbgap@:reads/SRP012000/SRS160321/SRX100044/SRR563883/SRR563883.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PASRTP-40A-01D.VAF_Comparison.png	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-14A-01D	DNA	EFO	SRS160321	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASRTP-14A-01D ING_AMLSRG.PASRTP14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASRTP14-1_1pA	SRX100044	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASRTP-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASRTP-14A-01D ING_AMLSRG.PASRTP14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_6.bam	SRR563883	@dbgap@:reads/SRP012000/SRS160321/SRX100044/SRR563883/SRR563883.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PASRTP-40A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-14A-01D	DNA	EFO	SRS160321	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASRTP-14A-01D ING_AMLSRG.PASRTP14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASRTP14-1_1pA	SRX100044	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASRTP-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASRTP-14A-01D ING_AMLSRG.PASRTP14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_6.bam	SRR563883	@dbgap@:reads/SRP012000/SRS160321/SRX100044/SRR563883/SRR563883.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-14A-01D	DNA	EFO	SRS160321	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASRTP-14A-01D ING_AMLSRG.PASRTP14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASRTP14-1_1pA	SRX100044	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASRTP-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASRTP-14A-01D ING_AMLSRG.PASRTP14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_6.bam	SRR563883	@dbgap@:reads/SRP012000/SRS160321/SRX100044/SRR563883/SRR563883.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-14A-01D	DNA	EFO	SRS160321	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASRTP-14A-01D ING_AMLSRG.PASRTP14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASRTP14-1_1pA	SRX100044	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASRTP-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASRTP-14A-01D ING_AMLSRG.PASRTP14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_6.bam	SRR563883	@dbgap@:reads/SRP012000/SRS160321/SRX100044/SRR563883/SRR563883.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-14A-01D	DNA	EFO	SRS160321	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASRTP-14A-01D ING_AMLSRG.PASRTP14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PASRTP14-1_1pA	SRX100044	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PASRTP-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASRTP-14A-01D ING_AMLSRG.PASRTP14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110125_SN166_0164_B819YUABXX_6.bam	SRR563883	@dbgap@:reads/SRP012000/SRS160321/SRX100044/SRR563883/SRR563883.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-40A-01D	DNA	EFO	SRS287514	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASRTP-40A-01D library	PAIRED	GENOMIC	WXS	Hybrid Selection	200			SRX150786		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASRTP-40A-01D run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_1_1.bam	SRR566200	@dbgap@:reads/SRP012000/SRS287514/SRX150786/SRR566200/SRR566200.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PASRTP-40A-01D.VAF_Comparison.png	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-40A-01D	DNA	EFO	SRS287514	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASRTP-40A-01D library	PAIRED	GENOMIC	WXS	Hybrid Selection	200			SRX150786		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASRTP-40A-01D run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_1_1.bam	SRR566200	@dbgap@:reads/SRP012000/SRS287514/SRX150786/SRR566200/SRR566200.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PASRTP-40A-01D.VAF_GenomeWide_Relapse.png	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-40A-01D	DNA	EFO	SRS287514	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASRTP-40A-01D library	PAIRED	GENOMIC	WXS	Hybrid Selection	200			SRX150786		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASRTP-40A-01D run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_1_1.bam	SRR566200	@dbgap@:reads/SRP012000/SRS287514/SRX150786/SRR566200/SRR566200.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-40A-01D	DNA	EFO	SRS287514	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASRTP-40A-01D library	PAIRED	GENOMIC	WXS	Hybrid Selection	200			SRX150786		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASRTP-40A-01D run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_1_1.bam	SRR566200	@dbgap@:reads/SRP012000/SRS287514/SRX150786/SRR566200/SRR566200.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PASRTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PASRTP-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PASRTP-40A-01D	DNA	EFO	SRS287514	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PASRTP-40A-01D library	PAIRED	GENOMIC	WXS	Hybrid Selection	200			SRX150786		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PASRTP-40A-01D run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_1_1.bam	SRR566200	@dbgap@:reads/SRP012000/SRS287514/SRX150786/SRR566200/SRR566200.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PATABB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATABB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATABB-04A-01D	DNA	EFO	SRS160323	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATABB-04A-01D ING_AMLSRG.PATABB04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PATABB04-1_1pA	SRX100046	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PATABB-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATABB-04A-01D ING_AMLSRG.PATABB04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_3.bam	SRR563885	@dbgap@:reads/SRP012000/SRS160323/SRX100046/SRR563885/SRR563885.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PATABB-04A-01D.VAF_Comparison.png	3
TARGET-20-PATABB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATABB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATABB-04A-01D	DNA	EFO	SRS160323	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATABB-04A-01D ING_AMLSRG.PATABB04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PATABB04-1_1pA	SRX100046	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PATABB-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATABB-04A-01D ING_AMLSRG.PATABB04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_3.bam	SRR563885	@dbgap@:reads/SRP012000/SRS160323/SRX100046/SRR563885/SRR563885.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PATABB-04A-01D.VAF_GenomeWide_Relapse.png	3
TARGET-20-PATABB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATABB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATABB-04A-01D	DNA	EFO	SRS160323	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATABB-04A-01D ING_AMLSRG.PATABB04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PATABB04-1_1pA	SRX100046	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PATABB-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATABB-04A-01D ING_AMLSRG.PATABB04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_3.bam	SRR563885	@dbgap@:reads/SRP012000/SRS160323/SRX100046/SRR563885/SRR563885.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PATABB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATABB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATABB-04A-01D	DNA	EFO	SRS160323	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATABB-04A-01D ING_AMLSRG.PATABB04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PATABB04-1_1pA	SRX100046	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PATABB-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATABB-04A-01D ING_AMLSRG.PATABB04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_3.bam	SRR563885	@dbgap@:reads/SRP012000/SRS160323/SRX100046/SRR563885/SRR563885.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PATABB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATABB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATABB-04A-01D	DNA	EFO	SRS160323	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATABB-04A-01D ING_AMLSRG.PATABB04-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PATABB04-1_1pA	SRX100046	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PATABB-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATABB-04A-01D ING_AMLSRG.PATABB04-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_3.bam	SRR563885	@dbgap@:reads/SRP012000/SRS160323/SRX100046/SRR563885/SRR563885.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PATABB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATABB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATABB-09A-01D	DNA	EFO	SRS287519	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATABB-09A-01D ING_AMLSRG.PATABB03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PATABB03-1_1pA	SRX100045		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATABB-09A-01D ING_AMLSRG.PATABB03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_2.bam	SRR563884	@dbgap@:reads/SRP012000/SRS287519/SRX100045/SRR563884/SRR563884.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PATABB-09A-01D.VAF_Comparison.png	3
TARGET-20-PATABB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATABB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATABB-09A-01D	DNA	EFO	SRS287519	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATABB-09A-01D ING_AMLSRG.PATABB03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PATABB03-1_1pA	SRX100045		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATABB-09A-01D ING_AMLSRG.PATABB03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_2.bam	SRR563884	@dbgap@:reads/SRP012000/SRS287519/SRX100045/SRR563884/SRR563884.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PATABB-09A-01D.VAF_GenomeWide_Primary.png	3
TARGET-20-PATABB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATABB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATABB-09A-01D	DNA	EFO	SRS287519	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATABB-09A-01D ING_AMLSRG.PATABB03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PATABB03-1_1pA	SRX100045		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATABB-09A-01D ING_AMLSRG.PATABB03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_2.bam	SRR563884	@dbgap@:reads/SRP012000/SRS287519/SRX100045/SRR563884/SRR563884.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PATABB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATABB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATABB-09A-01D	DNA	EFO	SRS287519	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATABB-09A-01D ING_AMLSRG.PATABB03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PATABB03-1_1pA	SRX100045		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATABB-09A-01D ING_AMLSRG.PATABB03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_2.bam	SRR563884	@dbgap@:reads/SRP012000/SRS287519/SRX100045/SRR563884/SRR563884.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PATABB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATABB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATABB-09A-01D	DNA	EFO	SRS287519	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATABB-09A-01D ING_AMLSRG.PATABB03-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PATABB03-1_1pA	SRX100045		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATABB-09A-01D ING_AMLSRG.PATABB03-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_2.bam	SRR563884	@dbgap@:reads/SRP012000/SRS287519/SRX100045/SRR563884/SRR563884.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PATABB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATABB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATABB-14A-01D	DNA	EFO	SRS160324	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATABB-14A-01D ING_AMLSRG.PATABB14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PATABB14-1_1pA	SRX100047	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PATABB-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATABB-14A-01D ING_AMLSRG.PATABB14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_1.bam	SRR563886	@dbgap@:reads/SRP012000/SRS160324/SRX100047/SRR563886/SRR563886.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PATABB-04A-01D.VAF_Comparison.png	3
TARGET-20-PATABB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATABB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATABB-14A-01D	DNA	EFO	SRS160324	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATABB-14A-01D ING_AMLSRG.PATABB14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PATABB14-1_1pA	SRX100047	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PATABB-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATABB-14A-01D ING_AMLSRG.PATABB14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_1.bam	SRR563886	@dbgap@:reads/SRP012000/SRS160324/SRX100047/SRR563886/SRR563886.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PATABB-04A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PATABB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATABB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATABB-14A-01D	DNA	EFO	SRS160324	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATABB-14A-01D ING_AMLSRG.PATABB14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PATABB14-1_1pA	SRX100047	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PATABB-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATABB-14A-01D ING_AMLSRG.PATABB14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_1.bam	SRR563886	@dbgap@:reads/SRP012000/SRS160324/SRX100047/SRR563886/SRR563886.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PATABB-09A-01D.VAF_Comparison.png	3
TARGET-20-PATABB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATABB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATABB-14A-01D	DNA	EFO	SRS160324	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATABB-14A-01D ING_AMLSRG.PATABB14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PATABB14-1_1pA	SRX100047	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PATABB-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATABB-14A-01D ING_AMLSRG.PATABB14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_1.bam	SRR563886	@dbgap@:reads/SRP012000/SRS160324/SRX100047/SRR563886/SRR563886.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PATABB-09A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PATABB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATABB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATABB-14A-01D	DNA	EFO	SRS160324	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATABB-14A-01D ING_AMLSRG.PATABB14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PATABB14-1_1pA	SRX100047	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PATABB-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATABB-14A-01D ING_AMLSRG.PATABB14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_1.bam	SRR563886	@dbgap@:reads/SRP012000/SRS160324/SRX100047/SRR563886/SRR563886.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PATABB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATABB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATABB-14A-01D	DNA	EFO	SRS160324	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATABB-14A-01D ING_AMLSRG.PATABB14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PATABB14-1_1pA	SRX100047	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PATABB-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATABB-14A-01D ING_AMLSRG.PATABB14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_1.bam	SRR563886	@dbgap@:reads/SRP012000/SRS160324/SRX100047/SRR563886/SRR563886.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PATABB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATABB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATABB-14A-01D	DNA	EFO	SRS160324	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATABB-14A-01D ING_AMLSRG.PATABB14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PATABB14-1_1pA	SRX100047	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PATABB-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATABB-14A-01D ING_AMLSRG.PATABB14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_1.bam	SRR563886	@dbgap@:reads/SRP012000/SRS160324/SRX100047/SRR563886/SRR563886.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PATABB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATABB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATABB-14A-01D	DNA	EFO	SRS160324	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATABB-14A-01D ING_AMLSRG.PATABB14-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PATABB14-1_1pA	SRX100047	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PATABB-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATABB-14A-01D ING_AMLSRG.PATABB14-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_1.bam	SRR563886	@dbgap@:reads/SRP012000/SRS160324/SRX100047/SRR563886/SRR563886.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-09A-01D	DNA	EFO	SRS287522	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATELT-09A-01D ING_AMLSRG.PATELT03_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PATELT03_1pA	SRX100030		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATELT-09A-01D ING_AMLSRG.PATELT03_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110330_SN733_0112_AC005WABXX_1.bam	SRR563989	@dbgap@:reads/SRP012000/SRS287522/SRX100030/SRR563989/SRR563989.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PATELT-09A-01D.VAF_Comparison.png	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-09A-01D	DNA	EFO	SRS287522	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATELT-09A-01D ING_AMLSRG.PATELT03_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PATELT03_1pA	SRX100030		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATELT-09A-01D ING_AMLSRG.PATELT03_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110330_SN733_0112_AC005WABXX_1.bam	SRR563989	@dbgap@:reads/SRP012000/SRS287522/SRX100030/SRR563989/SRR563989.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PATELT-09A-01D.VAF_GenomeWide_Primary.png	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-09A-01D	DNA	EFO	SRS287522	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATELT-09A-01D ING_AMLSRG.PATELT03_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PATELT03_1pA	SRX100030		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATELT-09A-01D ING_AMLSRG.PATELT03_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110330_SN733_0112_AC005WABXX_1.bam	SRR563989	@dbgap@:reads/SRP012000/SRS287522/SRX100030/SRR563989/SRR563989.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-09A-01D	DNA	EFO	SRS287522	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATELT-09A-01D ING_AMLSRG.PATELT03_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PATELT03_1pA	SRX100030		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATELT-09A-01D ING_AMLSRG.PATELT03_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110330_SN733_0112_AC005WABXX_1.bam	SRR563989	@dbgap@:reads/SRP012000/SRS287522/SRX100030/SRR563989/SRR563989.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-09A-01D	DNA	EFO	SRS287522	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATELT-09A-01D ING_AMLSRG.PATELT03_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_AMLSRG.PATELT03_1pA	SRX100030		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATELT-09A-01D ING_AMLSRG.PATELT03_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110330_SN733_0112_AC005WABXX_1.bam	SRR563989	@dbgap@:reads/SRP012000/SRS287522/SRX100030/SRR563989/SRR563989.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-10A-01D	DNA	EFO	SRS160326	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATELT-10A-01D ING_AMLSRG.PATELT10-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PATELT10-1_1pA	SRX100014	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PATELT-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATELT-10A-01D ING_AMLSRG.PATELT10-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_2.bam	SRR564085	@dbgap@:reads/SRP012000/SRS160326/SRX100014/SRR564085/SRR564085.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PATELT-09A-01D.VAF_Comparison.png	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-10A-01D	DNA	EFO	SRS160326	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATELT-10A-01D ING_AMLSRG.PATELT10-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PATELT10-1_1pA	SRX100014	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PATELT-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATELT-10A-01D ING_AMLSRG.PATELT10-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_2.bam	SRR564085	@dbgap@:reads/SRP012000/SRS160326/SRX100014/SRR564085/SRR564085.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	TARGET-20-PATELT-09A-01D.VAF_GenomeWide_Normal.png	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-10A-01D	DNA	EFO	SRS160326	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATELT-10A-01D ING_AMLSRG.PATELT10-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PATELT10-1_1pA	SRX100014	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PATELT-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATELT-10A-01D ING_AMLSRG.PATELT10-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_2.bam	SRR564085	@dbgap@:reads/SRP012000/SRS160326/SRX100014/SRR564085/SRR564085.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	eventsByPatientPerGene.target_aml.txt	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-10A-01D	DNA	EFO	SRS160326	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATELT-10A-01D ING_AMLSRG.PATELT10-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PATELT10-1_1pA	SRX100014	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PATELT-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATELT-10A-01D ING_AMLSRG.PATELT10-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_2.bam	SRR564085	@dbgap@:reads/SRP012000/SRS160326/SRX100014/SRR564085/SRR564085.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-CnvSegment-LOHcate:01	geneEnrichment.target_aml.txt	3
TARGET-20-PATELT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Acute Myeloid Leukemia	NCIt	Discovery	TARGET-20-PATELT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	fredhutch.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Fred Hutchinson Cancer Research Center	TARGET-20-PATELT-10A-01D	DNA	EFO	SRS160326	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-20-PATELT-10A-01D ING_AMLSRG.PATELT10-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_AMLSRG.PATELT10-1_1pA	SRX100014	"Whole Exome Sequencing of TARGET-AML sample TARGET-20-PATELT-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-20-PATELT-10A-01D ING_AMLSRG.PATELT10-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK-ITDAssembler:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110104_SN601_0067_B817V9ABXX_2.bam	SRR564085	@dbgap@:reads/SRP012000/SRS160326/SRX100014/SRR564085/SRR564085.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_AML_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3
