Source Name	Provider	Material Type	Term Source REF	Characteristics[Organism]	Term Source REF	Characteristics[Sex]	Term Source REF	Characteristics[DiseaseState]	Term Source REF	Comment[OCG Cohort]	Sample Name	Material Type	Term Source REF	Characteristics[OrganismPart]	Term Source REF	Description	Protocol REF	Performer	Extract Name	Material Type	Term Source REF	Comment[SRA_SAMPLE]	Protocol REF	Performer	Extract Name	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[LIBRARY_SELECTION]	Comment[LIBRARY_NAME]	Comment[SRA_EXPERIMENT]	Protocol REF	Performer	Assay Name	Technology Type	Term Source REF	Comment[SPOT_LENGTH]	Protocol REF	Protocol REF	Derived Array Data File	Comment[SRA_RUN]	Comment[SRA_FILE_URI]	Comment[OCG Data Level]	Comment[ASSEMBLY_NAME]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]
TARGET-51-PAEALX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAEALX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAEALX-01A-01D	DNA	EFO	SRS311972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAEALX-01A-01D GS01044-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G09	SRX189927	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAEALX-01A-01D GS01044-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48949-FS3_L01.bam	SRR577227	@dbgap@:reads/SRP012001/SRS311972/SRX189927/SRR577227/SRR577227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PAEALX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAEALX_NormalVsPrimary.png	4			
TARGET-51-PAEALX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAEALX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAEALX-01A-01D	DNA	EFO	SRS311972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAEALX-01A-01D GS01044-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G09	SRX189927	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAEALX-01A-01D GS01044-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48949-FS3_L01.bam	SRR577227	@dbgap@:reads/SRP012001/SRS311972/SRX189927/SRR577227/SRR577227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAEALX_NormalVsPrimary.png	4			
TARGET-51-PAEALX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAEALX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAEALX-01A-01D	DNA	EFO	SRS311972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAEALX-01A-01D GS01044-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G09	SRX189927	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAEALX-01A-01D GS01044-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48949-FS3_L01.bam	SRR577227	@dbgap@:reads/SRP012001/SRS311972/SRX189927/SRR577227/SRR577227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAEALX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAEALX_NormalVsPrimary.png	4			
TARGET-51-PAEALX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAEALX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAEALX-01A-01D	DNA	EFO	SRS311972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAEALX-01A-01D GS01044-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G09	SRX189927	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAEALX-01A-01D GS01044-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48949-FS3_L01.bam	SRR577227	@dbgap@:reads/SRP012001/SRS311972/SRX189927/SRR577227/SRR577227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAEALX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAEALX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PAEALX_NormalVsPrimary.maf.txt	3
TARGET-51-PAEALX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAEALX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAEALX-01A-01D	DNA	EFO	SRS311972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAEALX-01A-01D GS01044-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G09	SRX189927	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAEALX-01A-01D GS01044-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48949-FS3_L01.bam	SRR577227	@dbgap@:reads/SRP012001/SRS311972/SRX189927/SRR577227/SRR577227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAEALX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAEALX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAEALX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAEALX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAEALX-01A-01D	DNA	EFO	SRS311972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAEALX-01A-01D GS01044-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G09	SRX189927	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAEALX-01A-01D GS01044-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48949-FS3_L01.bam	SRR577227	@dbgap@:reads/SRP012001/SRS311972/SRX189927/SRR577227/SRR577227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAEALX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAEALX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAEALX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAEALX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAEALX-01A-01D	DNA	EFO	SRS311972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAEALX-01A-01D GS01044-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G09	SRX189927	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAEALX-01A-01D GS01044-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48949-FS3_L01.bam	SRR577227	@dbgap@:reads/SRP012001/SRS311972/SRX189927/SRR577227/SRR577227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAEALX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAEALX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAEALX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAEALX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAEALX-01A-01D	DNA	EFO	SRS311972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAEALX-01A-01D GS01044-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G09	SRX189927	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAEALX-01A-01D GS01044-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48949-FS3_L01.bam	SRR577227	@dbgap@:reads/SRP012001/SRS311972/SRX189927/SRR577227/SRR577227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAEALX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAEALX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAEALX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAEALX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAEALX-01A-01D	DNA	EFO	SRS311972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAEALX-01A-01D GS01044-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G09	SRX189927	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAEALX-01A-01D GS01044-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48949-FS3_L01.bam	SRR577227	@dbgap@:reads/SRP012001/SRS311972/SRX189927/SRR577227/SRR577227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAEALX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAEALX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAEALX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAEALX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAEALX-01A-01D	DNA	EFO	SRS311972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAEALX-01A-01D GS01044-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G09	SRX189927	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAEALX-01A-01D GS01044-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48949-FS3_L01.bam	SRR577227	@dbgap@:reads/SRP012001/SRS311972/SRX189927/SRR577227/SRR577227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAEALX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAEALX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAEALX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAEALX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAEALX-01A-01D	DNA	EFO	SRS311972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAEALX-01A-01D GS01044-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G09	SRX189927	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAEALX-01A-01D GS01044-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48949-FS3_L01.bam	SRR577227	@dbgap@:reads/SRP012001/SRS311972/SRX189927/SRR577227/SRR577227.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAEALX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAEALX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAEALX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAEALX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAEALX-11A-01D	DNA	EFO	SRS311971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAEALX-11A-01D GS01044-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_H09	SRX189926	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAEALX-11A-01D GS01044-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48798-FS3_L01.bam	SRR577234	@dbgap@:reads/SRP012001/SRS311971/SRX189926/SRR577234/SRR577234.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PAEALX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAEALX_NormalVsPrimary.png	4			
TARGET-51-PAEALX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAEALX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAEALX-11A-01D	DNA	EFO	SRS311971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAEALX-11A-01D GS01044-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_H09	SRX189926	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAEALX-11A-01D GS01044-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48798-FS3_L01.bam	SRR577234	@dbgap@:reads/SRP012001/SRS311971/SRX189926/SRR577234/SRR577234.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAEALX_NormalVsPrimary.png	4			
TARGET-51-PAEALX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAEALX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAEALX-11A-01D	DNA	EFO	SRS311971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAEALX-11A-01D GS01044-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_H09	SRX189926	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAEALX-11A-01D GS01044-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48798-FS3_L01.bam	SRR577234	@dbgap@:reads/SRP012001/SRS311971/SRX189926/SRR577234/SRR577234.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAEALX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAEALX_NormalVsPrimary.png	4			
TARGET-51-PAEALX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAEALX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAEALX-11A-01D	DNA	EFO	SRS311971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAEALX-11A-01D GS01044-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_H09	SRX189926	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAEALX-11A-01D GS01044-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48798-FS3_L01.bam	SRR577234	@dbgap@:reads/SRP012001/SRS311971/SRX189926/SRR577234/SRR577234.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAEALX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAEALX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PAEALX_NormalVsPrimary.maf.txt	3
TARGET-51-PAEALX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAEALX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAEALX-11A-01D	DNA	EFO	SRS311971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAEALX-11A-01D GS01044-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_H09	SRX189926	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAEALX-11A-01D GS01044-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48798-FS3_L01.bam	SRR577234	@dbgap@:reads/SRP012001/SRS311971/SRX189926/SRR577234/SRR577234.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAEALX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAEALX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAEALX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAEALX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAEALX-11A-01D	DNA	EFO	SRS311971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAEALX-11A-01D GS01044-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_H09	SRX189926	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAEALX-11A-01D GS01044-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48798-FS3_L01.bam	SRR577234	@dbgap@:reads/SRP012001/SRS311971/SRX189926/SRR577234/SRR577234.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAEALX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAEALX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAEALX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAEALX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAEALX-11A-01D	DNA	EFO	SRS311971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAEALX-11A-01D GS01044-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_H09	SRX189926	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAEALX-11A-01D GS01044-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48798-FS3_L01.bam	SRR577234	@dbgap@:reads/SRP012001/SRS311971/SRX189926/SRR577234/SRR577234.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAEALX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAEALX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAEALX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAEALX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAEALX-11A-01D	DNA	EFO	SRS311971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAEALX-11A-01D GS01044-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_H09	SRX189926	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAEALX-11A-01D GS01044-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48798-FS3_L01.bam	SRR577234	@dbgap@:reads/SRP012001/SRS311971/SRX189926/SRR577234/SRR577234.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAEALX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAEALX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAEALX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAEALX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAEALX-11A-01D	DNA	EFO	SRS311971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAEALX-11A-01D GS01044-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_H09	SRX189926	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAEALX-11A-01D GS01044-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48798-FS3_L01.bam	SRR577234	@dbgap@:reads/SRP012001/SRS311971/SRX189926/SRR577234/SRR577234.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAEALX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAEALX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAEALX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAEALX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAEALX-11A-01D	DNA	EFO	SRS311971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAEALX-11A-01D GS01044-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_H09	SRX189926	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAEALX-11A-01D GS01044-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48798-FS3_L01.bam	SRR577234	@dbgap@:reads/SRP012001/SRS311971/SRX189926/SRR577234/SRR577234.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAEALX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAEALX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAEALX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAEALX-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAEALX-11A-01D	DNA	EFO	SRS311971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAEALX-11A-01D GS01044-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_H09	SRX189926	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAEALX-11A-01D GS01044-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48798-FS3_L01.bam	SRR577234	@dbgap@:reads/SRP012001/SRS311971/SRX189926/SRR577234/SRR577234.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAEALX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAEALX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLIV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLIV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLIV-01A-01D	DNA	EFO	SRS301319	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLIV-01A-01D GS01103-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F07	SRX204280	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLIV-01A-01D GS01103-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55234-FS3_L01.bam	SRR616521	@dbgap@:reads/SRP012001/SRS301319/SRX204280/SRR616521/SRR616521.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PAJLIV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJLIV_NormalVsPrimary.png	4			
TARGET-51-PAJLIV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLIV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLIV-01A-01D	DNA	EFO	SRS301319	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLIV-01A-01D GS01103-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F07	SRX204280	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLIV-01A-01D GS01103-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55234-FS3_L01.bam	SRR616521	@dbgap@:reads/SRP012001/SRS301319/SRX204280/SRR616521/SRR616521.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJLIV_NormalVsPrimary.png	4			
TARGET-51-PAJLIV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLIV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLIV-01A-01D	DNA	EFO	SRS301319	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLIV-01A-01D GS01103-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F07	SRX204280	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLIV-01A-01D GS01103-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55234-FS3_L01.bam	SRR616521	@dbgap@:reads/SRP012001/SRS301319/SRX204280/SRR616521/SRR616521.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLIV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJLIV_NormalVsPrimary.png	4			
TARGET-51-PAJLIV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLIV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLIV-01A-01D	DNA	EFO	SRS301319	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLIV-01A-01D GS01103-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F07	SRX204280	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLIV-01A-01D GS01103-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55234-FS3_L01.bam	SRR616521	@dbgap@:reads/SRP012001/SRS301319/SRX204280/SRR616521/SRR616521.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLIV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLIV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PAJLIV_NormalVsPrimary.maf.txt	3
TARGET-51-PAJLIV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLIV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLIV-01A-01D	DNA	EFO	SRS301319	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLIV-01A-01D GS01103-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F07	SRX204280	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLIV-01A-01D GS01103-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55234-FS3_L01.bam	SRR616521	@dbgap@:reads/SRP012001/SRS301319/SRX204280/SRR616521/SRR616521.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLIV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLIV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLIV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLIV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLIV-01A-01D	DNA	EFO	SRS301319	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLIV-01A-01D GS01103-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F07	SRX204280	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLIV-01A-01D GS01103-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55234-FS3_L01.bam	SRR616521	@dbgap@:reads/SRP012001/SRS301319/SRX204280/SRR616521/SRR616521.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLIV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLIV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLIV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLIV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLIV-01A-01D	DNA	EFO	SRS301319	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLIV-01A-01D GS01103-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F07	SRX204280	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLIV-01A-01D GS01103-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55234-FS3_L01.bam	SRR616521	@dbgap@:reads/SRP012001/SRS301319/SRX204280/SRR616521/SRR616521.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLIV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLIV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLIV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLIV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLIV-01A-01D	DNA	EFO	SRS301319	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLIV-01A-01D GS01103-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F07	SRX204280	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLIV-01A-01D GS01103-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55234-FS3_L01.bam	SRR616521	@dbgap@:reads/SRP012001/SRS301319/SRX204280/SRR616521/SRR616521.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLIV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLIV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLIV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLIV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLIV-01A-01D	DNA	EFO	SRS301319	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLIV-01A-01D GS01103-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F07	SRX204280	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLIV-01A-01D GS01103-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55234-FS3_L01.bam	SRR616521	@dbgap@:reads/SRP012001/SRS301319/SRX204280/SRR616521/SRR616521.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLIV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLIV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLIV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLIV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLIV-01A-01D	DNA	EFO	SRS301319	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLIV-01A-01D GS01103-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F07	SRX204280	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLIV-01A-01D GS01103-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55234-FS3_L01.bam	SRR616521	@dbgap@:reads/SRP012001/SRS301319/SRX204280/SRR616521/SRR616521.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLIV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLIV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLIV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLIV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLIV-01A-01D	DNA	EFO	SRS301319	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLIV-01A-01D GS01103-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_F07	SRX204280	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLIV-01A-01D GS01103-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55234-FS3_L01.bam	SRR616521	@dbgap@:reads/SRP012001/SRS301319/SRX204280/SRR616521/SRR616521.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLIV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLIV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLIV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLIV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLIV-10A-02D	DNA	EFO	SRS301320	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLIV-10A-02D GS01103-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H07	SRX204279	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLIV-10A-02D GS01103-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55235-FS3_L03.bam	SRR616528	@dbgap@:reads/SRP012001/SRS301320/SRX204279/SRR616528/SRR616528.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PAJLIV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJLIV_NormalVsPrimary.png	4			
TARGET-51-PAJLIV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLIV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLIV-10A-02D	DNA	EFO	SRS301320	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLIV-10A-02D GS01103-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H07	SRX204279	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLIV-10A-02D GS01103-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55235-FS3_L03.bam	SRR616528	@dbgap@:reads/SRP012001/SRS301320/SRX204279/SRR616528/SRR616528.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJLIV_NormalVsPrimary.png	4			
TARGET-51-PAJLIV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLIV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLIV-10A-02D	DNA	EFO	SRS301320	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLIV-10A-02D GS01103-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H07	SRX204279	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLIV-10A-02D GS01103-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55235-FS3_L03.bam	SRR616528	@dbgap@:reads/SRP012001/SRS301320/SRX204279/SRR616528/SRR616528.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLIV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJLIV_NormalVsPrimary.png	4			
TARGET-51-PAJLIV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLIV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLIV-10A-02D	DNA	EFO	SRS301320	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLIV-10A-02D GS01103-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H07	SRX204279	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLIV-10A-02D GS01103-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55235-FS3_L03.bam	SRR616528	@dbgap@:reads/SRP012001/SRS301320/SRX204279/SRR616528/SRR616528.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLIV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLIV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PAJLIV_NormalVsPrimary.maf.txt	3
TARGET-51-PAJLIV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLIV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLIV-10A-02D	DNA	EFO	SRS301320	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLIV-10A-02D GS01103-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H07	SRX204279	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLIV-10A-02D GS01103-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55235-FS3_L03.bam	SRR616528	@dbgap@:reads/SRP012001/SRS301320/SRX204279/SRR616528/SRR616528.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLIV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLIV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLIV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLIV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLIV-10A-02D	DNA	EFO	SRS301320	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLIV-10A-02D GS01103-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H07	SRX204279	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLIV-10A-02D GS01103-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55235-FS3_L03.bam	SRR616528	@dbgap@:reads/SRP012001/SRS301320/SRX204279/SRR616528/SRR616528.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLIV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLIV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLIV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLIV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLIV-10A-02D	DNA	EFO	SRS301320	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLIV-10A-02D GS01103-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H07	SRX204279	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLIV-10A-02D GS01103-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55235-FS3_L03.bam	SRR616528	@dbgap@:reads/SRP012001/SRS301320/SRX204279/SRR616528/SRR616528.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLIV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLIV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLIV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLIV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLIV-10A-02D	DNA	EFO	SRS301320	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLIV-10A-02D GS01103-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H07	SRX204279	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLIV-10A-02D GS01103-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55235-FS3_L03.bam	SRR616528	@dbgap@:reads/SRP012001/SRS301320/SRX204279/SRR616528/SRR616528.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLIV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLIV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLIV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLIV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLIV-10A-02D	DNA	EFO	SRS301320	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLIV-10A-02D GS01103-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H07	SRX204279	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLIV-10A-02D GS01103-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55235-FS3_L03.bam	SRR616528	@dbgap@:reads/SRP012001/SRS301320/SRX204279/SRR616528/SRR616528.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLIV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLIV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLIV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLIV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLIV-10A-02D	DNA	EFO	SRS301320	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLIV-10A-02D GS01103-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H07	SRX204279	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLIV-10A-02D GS01103-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55235-FS3_L03.bam	SRR616528	@dbgap@:reads/SRP012001/SRS301320/SRX204279/SRR616528/SRR616528.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLIV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLIV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLIV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLIV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLIV-10A-02D	DNA	EFO	SRS301320	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLIV-10A-02D GS01103-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_H07	SRX204279	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLIV-10A-02D GS01103-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55235-FS3_L03.bam	SRR616528	@dbgap@:reads/SRP012001/SRS301320/SRX204279/SRR616528/SRR616528.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLIV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLIV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLWU-01A-01D	DNA	EFO	SRS301321	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLWU-01A-01D GS01044-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A10	SRX397125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLWU-01A-01D GS01044-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46993-FS3-L01.bam	SRR1056368	@dbgap@:reads/SRP012001/SRS301321/SRX397125/SRR1056368/SRR1056368.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PAJLWU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJLWU_NormalVsPrimary.png	4			
TARGET-51-PAJLWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLWU-01A-01D	DNA	EFO	SRS301321	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLWU-01A-01D GS01044-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A10	SRX397125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLWU-01A-01D GS01044-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46993-FS3-L01.bam	SRR1056368	@dbgap@:reads/SRP012001/SRS301321/SRX397125/SRR1056368/SRR1056368.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJLWU_NormalVsPrimary.png	4			
TARGET-51-PAJLWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLWU-01A-01D	DNA	EFO	SRS301321	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLWU-01A-01D GS01044-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A10	SRX397125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLWU-01A-01D GS01044-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46993-FS3-L01.bam	SRR1056368	@dbgap@:reads/SRP012001/SRS301321/SRX397125/SRR1056368/SRR1056368.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLWU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJLWU_NormalVsPrimary.png	4			
TARGET-51-PAJLWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLWU-01A-01D	DNA	EFO	SRS301321	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLWU-01A-01D GS01044-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A10	SRX397125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLWU-01A-01D GS01044-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46993-FS3-L01.bam	SRR1056368	@dbgap@:reads/SRP012001/SRS301321/SRX397125/SRR1056368/SRR1056368.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLWU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLWU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PAJLWU_NormalVsPrimary.maf.txt	3
TARGET-51-PAJLWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLWU-01A-01D	DNA	EFO	SRS301321	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLWU-01A-01D GS01044-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A10	SRX397125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLWU-01A-01D GS01044-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46993-FS3-L01.bam	SRR1056368	@dbgap@:reads/SRP012001/SRS301321/SRX397125/SRR1056368/SRR1056368.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLWU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLWU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLWU-01A-01D	DNA	EFO	SRS301321	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLWU-01A-01D GS01044-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A10	SRX397125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLWU-01A-01D GS01044-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46993-FS3-L01.bam	SRR1056368	@dbgap@:reads/SRP012001/SRS301321/SRX397125/SRR1056368/SRR1056368.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLWU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLWU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLWU-01A-01D	DNA	EFO	SRS301321	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLWU-01A-01D GS01044-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A10	SRX397125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLWU-01A-01D GS01044-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46993-FS3-L01.bam	SRR1056368	@dbgap@:reads/SRP012001/SRS301321/SRX397125/SRR1056368/SRR1056368.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLWU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLWU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLWU-01A-01D	DNA	EFO	SRS301321	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLWU-01A-01D GS01044-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A10	SRX397125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLWU-01A-01D GS01044-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46993-FS3-L01.bam	SRR1056368	@dbgap@:reads/SRP012001/SRS301321/SRX397125/SRR1056368/SRR1056368.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLWU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLWU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLWU-01A-01D	DNA	EFO	SRS301321	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLWU-01A-01D GS01044-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A10	SRX397125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLWU-01A-01D GS01044-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46993-FS3-L01.bam	SRR1056368	@dbgap@:reads/SRP012001/SRS301321/SRX397125/SRR1056368/SRR1056368.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLWU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLWU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLWU-01A-01D	DNA	EFO	SRS301321	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLWU-01A-01D GS01044-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A10	SRX397125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLWU-01A-01D GS01044-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46993-FS3-L01.bam	SRR1056368	@dbgap@:reads/SRP012001/SRS301321/SRX397125/SRR1056368/SRR1056368.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLWU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLWU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLWU-01A-01D	DNA	EFO	SRS301321	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLWU-01A-01D GS01044-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A10	SRX397125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLWU-01A-01D GS01044-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46993-FS3-L01.bam	SRR1056368	@dbgap@:reads/SRP012001/SRS301321/SRX397125/SRR1056368/SRR1056368.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLWU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLWU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLWU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLWU-10A-02D	DNA	EFO	SRS301322	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLWU-10A-02D GS01109-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01109-CLS_F11	SRX397126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLWU-10A-02D GS01109-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54264-FS3-L01.bam	SRR1056361	@dbgap@:reads/SRP012001/SRS301322/SRX397126/SRR1056361/SRR1056361.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PAJLWU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJLWU_NormalVsPrimary.png	4			
TARGET-51-PAJLWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLWU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLWU-10A-02D	DNA	EFO	SRS301322	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLWU-10A-02D GS01109-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01109-CLS_F11	SRX397126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLWU-10A-02D GS01109-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54264-FS3-L01.bam	SRR1056361	@dbgap@:reads/SRP012001/SRS301322/SRX397126/SRR1056361/SRR1056361.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJLWU_NormalVsPrimary.png	4			
TARGET-51-PAJLWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLWU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLWU-10A-02D	DNA	EFO	SRS301322	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLWU-10A-02D GS01109-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01109-CLS_F11	SRX397126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLWU-10A-02D GS01109-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54264-FS3-L01.bam	SRR1056361	@dbgap@:reads/SRP012001/SRS301322/SRX397126/SRR1056361/SRR1056361.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLWU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJLWU_NormalVsPrimary.png	4			
TARGET-51-PAJLWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLWU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLWU-10A-02D	DNA	EFO	SRS301322	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLWU-10A-02D GS01109-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01109-CLS_F11	SRX397126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLWU-10A-02D GS01109-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54264-FS3-L01.bam	SRR1056361	@dbgap@:reads/SRP012001/SRS301322/SRX397126/SRR1056361/SRR1056361.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLWU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLWU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PAJLWU_NormalVsPrimary.maf.txt	3
TARGET-51-PAJLWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLWU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLWU-10A-02D	DNA	EFO	SRS301322	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLWU-10A-02D GS01109-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01109-CLS_F11	SRX397126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLWU-10A-02D GS01109-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54264-FS3-L01.bam	SRR1056361	@dbgap@:reads/SRP012001/SRS301322/SRX397126/SRR1056361/SRR1056361.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLWU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLWU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLWU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLWU-10A-02D	DNA	EFO	SRS301322	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLWU-10A-02D GS01109-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01109-CLS_F11	SRX397126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLWU-10A-02D GS01109-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54264-FS3-L01.bam	SRR1056361	@dbgap@:reads/SRP012001/SRS301322/SRX397126/SRR1056361/SRR1056361.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLWU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLWU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLWU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLWU-10A-02D	DNA	EFO	SRS301322	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLWU-10A-02D GS01109-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01109-CLS_F11	SRX397126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLWU-10A-02D GS01109-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54264-FS3-L01.bam	SRR1056361	@dbgap@:reads/SRP012001/SRS301322/SRX397126/SRR1056361/SRR1056361.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLWU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLWU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLWU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLWU-10A-02D	DNA	EFO	SRS301322	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLWU-10A-02D GS01109-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01109-CLS_F11	SRX397126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLWU-10A-02D GS01109-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54264-FS3-L01.bam	SRR1056361	@dbgap@:reads/SRP012001/SRS301322/SRX397126/SRR1056361/SRR1056361.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLWU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLWU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLWU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLWU-10A-02D	DNA	EFO	SRS301322	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLWU-10A-02D GS01109-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01109-CLS_F11	SRX397126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLWU-10A-02D GS01109-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54264-FS3-L01.bam	SRR1056361	@dbgap@:reads/SRP012001/SRS301322/SRX397126/SRR1056361/SRR1056361.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLWU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLWU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLWU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLWU-10A-02D	DNA	EFO	SRS301322	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLWU-10A-02D GS01109-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01109-CLS_F11	SRX397126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLWU-10A-02D GS01109-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54264-FS3-L01.bam	SRR1056361	@dbgap@:reads/SRP012001/SRS301322/SRX397126/SRR1056361/SRR1056361.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLWU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLWU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJLWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJLWU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJLWU-10A-02D	DNA	EFO	SRS301322	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJLWU-10A-02D GS01109-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01109-CLS_F11	SRX397126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJLWU-10A-02D GS01109-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54264-FS3-L01.bam	SRR1056361	@dbgap@:reads/SRP012001/SRS301322/SRX397126/SRR1056361/SRR1056361.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJLWU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJLWU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMFS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMFS-01A-01D	DNA	EFO	SRS301323	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMFS-01A-01D GS01044-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C10	SRX176213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMFS-01A-01D GS01044-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49008-FS3_L03.bam	SRR538023	@dbgap@:reads/SRP012001/SRS301323/SRX176213/SRR538023/SRR538023.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PAJMFS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJMFS_NormalVsPrimary.png	4			
TARGET-51-PAJMFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMFS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMFS-01A-01D	DNA	EFO	SRS301323	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMFS-01A-01D GS01044-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C10	SRX176213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMFS-01A-01D GS01044-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49008-FS3_L03.bam	SRR538023	@dbgap@:reads/SRP012001/SRS301323/SRX176213/SRR538023/SRR538023.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJMFS_NormalVsPrimary.png	4			
TARGET-51-PAJMFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMFS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMFS-01A-01D	DNA	EFO	SRS301323	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMFS-01A-01D GS01044-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C10	SRX176213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMFS-01A-01D GS01044-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49008-FS3_L03.bam	SRR538023	@dbgap@:reads/SRP012001/SRS301323/SRX176213/SRR538023/SRR538023.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMFS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJMFS_NormalVsPrimary.png	4			
TARGET-51-PAJMFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMFS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMFS-01A-01D	DNA	EFO	SRS301323	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMFS-01A-01D GS01044-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C10	SRX176213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMFS-01A-01D GS01044-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49008-FS3_L03.bam	SRR538023	@dbgap@:reads/SRP012001/SRS301323/SRX176213/SRR538023/SRR538023.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMFS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMFS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PAJMFS_NormalVsPrimary.maf.txt	3
TARGET-51-PAJMFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMFS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMFS-01A-01D	DNA	EFO	SRS301323	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMFS-01A-01D GS01044-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C10	SRX176213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMFS-01A-01D GS01044-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49008-FS3_L03.bam	SRR538023	@dbgap@:reads/SRP012001/SRS301323/SRX176213/SRR538023/SRR538023.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMFS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMFS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMFS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMFS-01A-01D	DNA	EFO	SRS301323	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMFS-01A-01D GS01044-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C10	SRX176213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMFS-01A-01D GS01044-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49008-FS3_L03.bam	SRR538023	@dbgap@:reads/SRP012001/SRS301323/SRX176213/SRR538023/SRR538023.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMFS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMFS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMFS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMFS-01A-01D	DNA	EFO	SRS301323	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMFS-01A-01D GS01044-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C10	SRX176213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMFS-01A-01D GS01044-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49008-FS3_L03.bam	SRR538023	@dbgap@:reads/SRP012001/SRS301323/SRX176213/SRR538023/SRR538023.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMFS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMFS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMFS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMFS-01A-01D	DNA	EFO	SRS301323	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMFS-01A-01D GS01044-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C10	SRX176213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMFS-01A-01D GS01044-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49008-FS3_L03.bam	SRR538023	@dbgap@:reads/SRP012001/SRS301323/SRX176213/SRR538023/SRR538023.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMFS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMFS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMFS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMFS-01A-01D	DNA	EFO	SRS301323	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMFS-01A-01D GS01044-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C10	SRX176213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMFS-01A-01D GS01044-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49008-FS3_L03.bam	SRR538023	@dbgap@:reads/SRP012001/SRS301323/SRX176213/SRR538023/SRR538023.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMFS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMFS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMFS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMFS-01A-01D	DNA	EFO	SRS301323	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMFS-01A-01D GS01044-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C10	SRX176213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMFS-01A-01D GS01044-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49008-FS3_L03.bam	SRR538023	@dbgap@:reads/SRP012001/SRS301323/SRX176213/SRR538023/SRR538023.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMFS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMFS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMFS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMFS-01A-01D	DNA	EFO	SRS301323	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMFS-01A-01D GS01044-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C10	SRX176213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMFS-01A-01D GS01044-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49008-FS3_L03.bam	SRR538023	@dbgap@:reads/SRP012001/SRS301323/SRX176213/SRR538023/SRR538023.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMFS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMFS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMFS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMFS-11A-01D	DNA	EFO	SRS301325	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMFS-11A-01D GS01044-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D10	SRX176212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMFS-11A-01D GS01044-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49008-FS3_L01.bam	SRR538030	@dbgap@:reads/SRP012001/SRS301325/SRX176212/SRR538030/SRR538030.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PAJMFS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJMFS_NormalVsPrimary.png	4			
TARGET-51-PAJMFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMFS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMFS-11A-01D	DNA	EFO	SRS301325	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMFS-11A-01D GS01044-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D10	SRX176212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMFS-11A-01D GS01044-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49008-FS3_L01.bam	SRR538030	@dbgap@:reads/SRP012001/SRS301325/SRX176212/SRR538030/SRR538030.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJMFS_NormalVsPrimary.png	4			
TARGET-51-PAJMFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMFS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMFS-11A-01D	DNA	EFO	SRS301325	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMFS-11A-01D GS01044-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D10	SRX176212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMFS-11A-01D GS01044-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49008-FS3_L01.bam	SRR538030	@dbgap@:reads/SRP012001/SRS301325/SRX176212/SRR538030/SRR538030.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMFS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJMFS_NormalVsPrimary.png	4			
TARGET-51-PAJMFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMFS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMFS-11A-01D	DNA	EFO	SRS301325	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMFS-11A-01D GS01044-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D10	SRX176212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMFS-11A-01D GS01044-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49008-FS3_L01.bam	SRR538030	@dbgap@:reads/SRP012001/SRS301325/SRX176212/SRR538030/SRR538030.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMFS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMFS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PAJMFS_NormalVsPrimary.maf.txt	3
TARGET-51-PAJMFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMFS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMFS-11A-01D	DNA	EFO	SRS301325	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMFS-11A-01D GS01044-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D10	SRX176212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMFS-11A-01D GS01044-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49008-FS3_L01.bam	SRR538030	@dbgap@:reads/SRP012001/SRS301325/SRX176212/SRR538030/SRR538030.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMFS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMFS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMFS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMFS-11A-01D	DNA	EFO	SRS301325	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMFS-11A-01D GS01044-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D10	SRX176212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMFS-11A-01D GS01044-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49008-FS3_L01.bam	SRR538030	@dbgap@:reads/SRP012001/SRS301325/SRX176212/SRR538030/SRR538030.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMFS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMFS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMFS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMFS-11A-01D	DNA	EFO	SRS301325	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMFS-11A-01D GS01044-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D10	SRX176212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMFS-11A-01D GS01044-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49008-FS3_L01.bam	SRR538030	@dbgap@:reads/SRP012001/SRS301325/SRX176212/SRR538030/SRR538030.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMFS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMFS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMFS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMFS-11A-01D	DNA	EFO	SRS301325	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMFS-11A-01D GS01044-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D10	SRX176212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMFS-11A-01D GS01044-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49008-FS3_L01.bam	SRR538030	@dbgap@:reads/SRP012001/SRS301325/SRX176212/SRR538030/SRR538030.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMFS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMFS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMFS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMFS-11A-01D	DNA	EFO	SRS301325	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMFS-11A-01D GS01044-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D10	SRX176212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMFS-11A-01D GS01044-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49008-FS3_L01.bam	SRR538030	@dbgap@:reads/SRP012001/SRS301325/SRX176212/SRR538030/SRR538030.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMFS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMFS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMFS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMFS-11A-01D	DNA	EFO	SRS301325	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMFS-11A-01D GS01044-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D10	SRX176212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMFS-11A-01D GS01044-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49008-FS3_L01.bam	SRR538030	@dbgap@:reads/SRP012001/SRS301325/SRX176212/SRR538030/SRR538030.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMFS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMFS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMFS-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMFS-11A-01D	DNA	EFO	SRS301325	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMFS-11A-01D GS01044-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D10	SRX176212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMFS-11A-01D GS01044-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49008-FS3_L01.bam	SRR538030	@dbgap@:reads/SRP012001/SRS301325/SRX176212/SRR538030/SRR538030.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMFS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMFS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMNM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMNM-01A-01D	DNA	EFO	SRS301328	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMNM-01A-01D GS01103-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A08	SRX204264	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMNM-01A-01D GS01103-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54706-FS3_L01.bam	SRR616405	@dbgap@:reads/SRP012001/SRS301328/SRX204264/SRR616405/SRR616405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PAJMNM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJMNM_NormalVsPrimary.png	4			
TARGET-51-PAJMNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMNM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMNM-01A-01D	DNA	EFO	SRS301328	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMNM-01A-01D GS01103-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A08	SRX204264	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMNM-01A-01D GS01103-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54706-FS3_L01.bam	SRR616405	@dbgap@:reads/SRP012001/SRS301328/SRX204264/SRR616405/SRR616405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJMNM_NormalVsPrimary.png	4			
TARGET-51-PAJMNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMNM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMNM-01A-01D	DNA	EFO	SRS301328	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMNM-01A-01D GS01103-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A08	SRX204264	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMNM-01A-01D GS01103-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54706-FS3_L01.bam	SRR616405	@dbgap@:reads/SRP012001/SRS301328/SRX204264/SRR616405/SRR616405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJMNM_NormalVsPrimary.png	4			
TARGET-51-PAJMNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMNM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMNM-01A-01D	DNA	EFO	SRS301328	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMNM-01A-01D GS01103-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A08	SRX204264	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMNM-01A-01D GS01103-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54706-FS3_L01.bam	SRR616405	@dbgap@:reads/SRP012001/SRS301328/SRX204264/SRR616405/SRR616405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PAJMNM_NormalVsPrimary.maf.txt	3
TARGET-51-PAJMNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMNM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMNM-01A-01D	DNA	EFO	SRS301328	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMNM-01A-01D GS01103-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A08	SRX204264	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMNM-01A-01D GS01103-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54706-FS3_L01.bam	SRR616405	@dbgap@:reads/SRP012001/SRS301328/SRX204264/SRR616405/SRR616405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMNM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMNM-01A-01D	DNA	EFO	SRS301328	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMNM-01A-01D GS01103-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A08	SRX204264	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMNM-01A-01D GS01103-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54706-FS3_L01.bam	SRR616405	@dbgap@:reads/SRP012001/SRS301328/SRX204264/SRR616405/SRR616405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMNM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMNM-01A-01D	DNA	EFO	SRS301328	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMNM-01A-01D GS01103-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A08	SRX204264	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMNM-01A-01D GS01103-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54706-FS3_L01.bam	SRR616405	@dbgap@:reads/SRP012001/SRS301328/SRX204264/SRR616405/SRR616405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMNM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMNM-01A-01D	DNA	EFO	SRS301328	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMNM-01A-01D GS01103-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A08	SRX204264	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMNM-01A-01D GS01103-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54706-FS3_L01.bam	SRR616405	@dbgap@:reads/SRP012001/SRS301328/SRX204264/SRR616405/SRR616405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMNM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMNM-01A-01D	DNA	EFO	SRS301328	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMNM-01A-01D GS01103-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A08	SRX204264	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMNM-01A-01D GS01103-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54706-FS3_L01.bam	SRR616405	@dbgap@:reads/SRP012001/SRS301328/SRX204264/SRR616405/SRR616405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMNM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMNM-01A-01D	DNA	EFO	SRS301328	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMNM-01A-01D GS01103-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A08	SRX204264	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMNM-01A-01D GS01103-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54706-FS3_L01.bam	SRR616405	@dbgap@:reads/SRP012001/SRS301328/SRX204264/SRR616405/SRR616405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMNM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMNM-01A-01D	DNA	EFO	SRS301328	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMNM-01A-01D GS01103-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_A08	SRX204264	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMNM-01A-01D GS01103-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54706-FS3_L01.bam	SRR616405	@dbgap@:reads/SRP012001/SRS301328/SRX204264/SRR616405/SRR616405.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMNM-10A-02D	DNA	EFO	SRS301329	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMNM-10A-02D GS01103-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B08	SRX204263	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMNM-10A-02D GS01103-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55233-FS3_L01.bam	SRR616412	@dbgap@:reads/SRP012001/SRS301329/SRX204263/SRR616412/SRR616412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PAJMNM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJMNM_NormalVsPrimary.png	4			
TARGET-51-PAJMNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMNM-10A-02D	DNA	EFO	SRS301329	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMNM-10A-02D GS01103-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B08	SRX204263	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMNM-10A-02D GS01103-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55233-FS3_L01.bam	SRR616412	@dbgap@:reads/SRP012001/SRS301329/SRX204263/SRR616412/SRR616412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJMNM_NormalVsPrimary.png	4			
TARGET-51-PAJMNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMNM-10A-02D	DNA	EFO	SRS301329	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMNM-10A-02D GS01103-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B08	SRX204263	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMNM-10A-02D GS01103-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55233-FS3_L01.bam	SRR616412	@dbgap@:reads/SRP012001/SRS301329/SRX204263/SRR616412/SRR616412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJMNM_NormalVsPrimary.png	4			
TARGET-51-PAJMNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMNM-10A-02D	DNA	EFO	SRS301329	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMNM-10A-02D GS01103-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B08	SRX204263	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMNM-10A-02D GS01103-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55233-FS3_L01.bam	SRR616412	@dbgap@:reads/SRP012001/SRS301329/SRX204263/SRR616412/SRR616412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PAJMNM_NormalVsPrimary.maf.txt	3
TARGET-51-PAJMNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMNM-10A-02D	DNA	EFO	SRS301329	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMNM-10A-02D GS01103-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B08	SRX204263	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMNM-10A-02D GS01103-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55233-FS3_L01.bam	SRR616412	@dbgap@:reads/SRP012001/SRS301329/SRX204263/SRR616412/SRR616412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMNM-10A-02D	DNA	EFO	SRS301329	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMNM-10A-02D GS01103-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B08	SRX204263	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMNM-10A-02D GS01103-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55233-FS3_L01.bam	SRR616412	@dbgap@:reads/SRP012001/SRS301329/SRX204263/SRR616412/SRR616412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMNM-10A-02D	DNA	EFO	SRS301329	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMNM-10A-02D GS01103-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B08	SRX204263	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMNM-10A-02D GS01103-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55233-FS3_L01.bam	SRR616412	@dbgap@:reads/SRP012001/SRS301329/SRX204263/SRR616412/SRR616412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMNM-10A-02D	DNA	EFO	SRS301329	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMNM-10A-02D GS01103-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B08	SRX204263	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMNM-10A-02D GS01103-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55233-FS3_L01.bam	SRR616412	@dbgap@:reads/SRP012001/SRS301329/SRX204263/SRR616412/SRR616412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMNM-10A-02D	DNA	EFO	SRS301329	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMNM-10A-02D GS01103-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B08	SRX204263	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMNM-10A-02D GS01103-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55233-FS3_L01.bam	SRR616412	@dbgap@:reads/SRP012001/SRS301329/SRX204263/SRR616412/SRR616412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMNM-10A-02D	DNA	EFO	SRS301329	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMNM-10A-02D GS01103-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B08	SRX204263	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMNM-10A-02D GS01103-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55233-FS3_L01.bam	SRR616412	@dbgap@:reads/SRP012001/SRS301329/SRX204263/SRR616412/SRR616412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJMNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJMNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJMNM-10A-02D	DNA	EFO	SRS301329	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJMNM-10A-02D GS01103-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM	GS01103-CLS_B08	SRX204263	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJMNM-10A-02D GS01103-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55233-FS3_L01.bam	SRR616412	@dbgap@:reads/SRP012001/SRS301329/SRX204263/SRR616412/SRR616412.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJMNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJMNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJNCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJNCV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJNCV-01A-01D	DNA	EFO	SRS301330	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJNCV-01A-01D GS01044-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_E10	SRX170573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJNCV-01A-01D GS01044-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48803-FS3_L01.bam	SRR526150	@dbgap@:reads/SRP012001/SRS301330/SRX170573/SRR526150/SRR526150.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PAJNCV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJNCV_NormalVsPrimary.png	4			
TARGET-51-PAJNCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJNCV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJNCV-01A-01D	DNA	EFO	SRS301330	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJNCV-01A-01D GS01044-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_E10	SRX170573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJNCV-01A-01D GS01044-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48803-FS3_L01.bam	SRR526150	@dbgap@:reads/SRP012001/SRS301330/SRX170573/SRR526150/SRR526150.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJNCV_NormalVsPrimary.png	4			
TARGET-51-PAJNCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJNCV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJNCV-01A-01D	DNA	EFO	SRS301330	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJNCV-01A-01D GS01044-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_E10	SRX170573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJNCV-01A-01D GS01044-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48803-FS3_L01.bam	SRR526150	@dbgap@:reads/SRP012001/SRS301330/SRX170573/SRR526150/SRR526150.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJNCV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJNCV_NormalVsPrimary.png	4			
TARGET-51-PAJNCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJNCV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJNCV-01A-01D	DNA	EFO	SRS301330	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJNCV-01A-01D GS01044-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_E10	SRX170573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJNCV-01A-01D GS01044-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48803-FS3_L01.bam	SRR526150	@dbgap@:reads/SRP012001/SRS301330/SRX170573/SRR526150/SRR526150.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJNCV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJNCV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PAJNCV_NormalVsPrimary.maf.txt	3
TARGET-51-PAJNCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJNCV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJNCV-01A-01D	DNA	EFO	SRS301330	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJNCV-01A-01D GS01044-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_E10	SRX170573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJNCV-01A-01D GS01044-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48803-FS3_L01.bam	SRR526150	@dbgap@:reads/SRP012001/SRS301330/SRX170573/SRR526150/SRR526150.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJNCV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJNCV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAJNCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJNCV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJNCV-01A-01D	DNA	EFO	SRS301330	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJNCV-01A-01D GS01044-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_E10	SRX170573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJNCV-01A-01D GS01044-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48803-FS3_L01.bam	SRR526150	@dbgap@:reads/SRP012001/SRS301330/SRX170573/SRR526150/SRR526150.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJNCV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJNCV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAJNCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJNCV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJNCV-01A-01D	DNA	EFO	SRS301330	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJNCV-01A-01D GS01044-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_E10	SRX170573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJNCV-01A-01D GS01044-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48803-FS3_L01.bam	SRR526150	@dbgap@:reads/SRP012001/SRS301330/SRX170573/SRR526150/SRR526150.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJNCV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJNCV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAJNCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJNCV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJNCV-01A-01D	DNA	EFO	SRS301330	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJNCV-01A-01D GS01044-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_E10	SRX170573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJNCV-01A-01D GS01044-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48803-FS3_L01.bam	SRR526150	@dbgap@:reads/SRP012001/SRS301330/SRX170573/SRR526150/SRR526150.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJNCV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJNCV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJNCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJNCV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJNCV-01A-01D	DNA	EFO	SRS301330	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJNCV-01A-01D GS01044-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_E10	SRX170573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJNCV-01A-01D GS01044-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48803-FS3_L01.bam	SRR526150	@dbgap@:reads/SRP012001/SRS301330/SRX170573/SRR526150/SRR526150.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJNCV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJNCV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAJNCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJNCV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJNCV-01A-01D	DNA	EFO	SRS301330	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJNCV-01A-01D GS01044-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_E10	SRX170573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJNCV-01A-01D GS01044-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48803-FS3_L01.bam	SRR526150	@dbgap@:reads/SRP012001/SRS301330/SRX170573/SRR526150/SRR526150.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJNCV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJNCV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJNCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJNCV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJNCV-01A-01D	DNA	EFO	SRS301330	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJNCV-01A-01D GS01044-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_E10	SRX170573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJNCV-01A-01D GS01044-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48803-FS3_L01.bam	SRR526150	@dbgap@:reads/SRP012001/SRS301330/SRX170573/SRR526150/SRR526150.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJNCV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJNCV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJNCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJNCV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJNCV-10A-02D	DNA	EFO	SRS301331	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJNCV-10A-02D GS01044-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_F10	SRX170572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJNCV-10A-02D GS01044-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48814-FS3_L01.bam	SRR526156	@dbgap@:reads/SRP012001/SRS301331/SRX170572/SRR526156/SRR526156.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PAJNCV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJNCV_NormalVsPrimary.png	4			
TARGET-51-PAJNCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJNCV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJNCV-10A-02D	DNA	EFO	SRS301331	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJNCV-10A-02D GS01044-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_F10	SRX170572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJNCV-10A-02D GS01044-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48814-FS3_L01.bam	SRR526156	@dbgap@:reads/SRP012001/SRS301331/SRX170572/SRR526156/SRR526156.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJNCV_NormalVsPrimary.png	4			
TARGET-51-PAJNCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJNCV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJNCV-10A-02D	DNA	EFO	SRS301331	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJNCV-10A-02D GS01044-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_F10	SRX170572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJNCV-10A-02D GS01044-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48814-FS3_L01.bam	SRR526156	@dbgap@:reads/SRP012001/SRS301331/SRX170572/SRR526156/SRR526156.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJNCV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJNCV_NormalVsPrimary.png	4			
TARGET-51-PAJNCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJNCV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJNCV-10A-02D	DNA	EFO	SRS301331	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJNCV-10A-02D GS01044-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_F10	SRX170572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJNCV-10A-02D GS01044-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48814-FS3_L01.bam	SRR526156	@dbgap@:reads/SRP012001/SRS301331/SRX170572/SRR526156/SRR526156.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJNCV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJNCV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PAJNCV_NormalVsPrimary.maf.txt	3
TARGET-51-PAJNCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJNCV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJNCV-10A-02D	DNA	EFO	SRS301331	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJNCV-10A-02D GS01044-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_F10	SRX170572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJNCV-10A-02D GS01044-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48814-FS3_L01.bam	SRR526156	@dbgap@:reads/SRP012001/SRS301331/SRX170572/SRR526156/SRR526156.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJNCV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJNCV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAJNCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJNCV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJNCV-10A-02D	DNA	EFO	SRS301331	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJNCV-10A-02D GS01044-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_F10	SRX170572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJNCV-10A-02D GS01044-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48814-FS3_L01.bam	SRR526156	@dbgap@:reads/SRP012001/SRS301331/SRX170572/SRR526156/SRR526156.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJNCV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJNCV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAJNCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJNCV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJNCV-10A-02D	DNA	EFO	SRS301331	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJNCV-10A-02D GS01044-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_F10	SRX170572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJNCV-10A-02D GS01044-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48814-FS3_L01.bam	SRR526156	@dbgap@:reads/SRP012001/SRS301331/SRX170572/SRR526156/SRR526156.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJNCV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJNCV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAJNCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJNCV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJNCV-10A-02D	DNA	EFO	SRS301331	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJNCV-10A-02D GS01044-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_F10	SRX170572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJNCV-10A-02D GS01044-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48814-FS3_L01.bam	SRR526156	@dbgap@:reads/SRP012001/SRS301331/SRX170572/SRR526156/SRR526156.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJNCV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJNCV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJNCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJNCV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJNCV-10A-02D	DNA	EFO	SRS301331	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJNCV-10A-02D GS01044-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_F10	SRX170572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJNCV-10A-02D GS01044-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48814-FS3_L01.bam	SRR526156	@dbgap@:reads/SRP012001/SRS301331/SRX170572/SRR526156/SRR526156.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJNCV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJNCV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAJNCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJNCV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJNCV-10A-02D	DNA	EFO	SRS301331	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJNCV-10A-02D GS01044-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_F10	SRX170572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJNCV-10A-02D GS01044-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48814-FS3_L01.bam	SRR526156	@dbgap@:reads/SRP012001/SRS301331/SRX170572/SRR526156/SRR526156.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJNCV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJNCV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJNCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJNCV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJNCV-10A-02D	DNA	EFO	SRS301331	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJNCV-10A-02D GS01044-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_F10	SRX170572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJNCV-10A-02D GS01044-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48814-FS3_L01.bam	SRR526156	@dbgap@:reads/SRP012001/SRS301331/SRX170572/SRR526156/SRR526156.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJNCV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJNCV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJPFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJPFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJPFB-01A-01D	DNA	EFO	SRS301332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJPFB-01A-01D GS01044-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G10	SRX176220	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJPFB-01A-01D GS01044-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48802-FS3_L01.bam	SRR538255	@dbgap@:reads/SRP012001/SRS301332/SRX176220/SRR538255/SRR538255.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PAJPFB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJPFB_NormalVsPrimary.png	4			
TARGET-51-PAJPFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJPFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJPFB-01A-01D	DNA	EFO	SRS301332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJPFB-01A-01D GS01044-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G10	SRX176220	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJPFB-01A-01D GS01044-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48802-FS3_L01.bam	SRR538255	@dbgap@:reads/SRP012001/SRS301332/SRX176220/SRR538255/SRR538255.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJPFB_NormalVsPrimary.png	4			
TARGET-51-PAJPFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJPFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJPFB-01A-01D	DNA	EFO	SRS301332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJPFB-01A-01D GS01044-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G10	SRX176220	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJPFB-01A-01D GS01044-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48802-FS3_L01.bam	SRR538255	@dbgap@:reads/SRP012001/SRS301332/SRX176220/SRR538255/SRR538255.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJPFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJPFB_NormalVsPrimary.png	4			
TARGET-51-PAJPFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJPFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJPFB-01A-01D	DNA	EFO	SRS301332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJPFB-01A-01D GS01044-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G10	SRX176220	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJPFB-01A-01D GS01044-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48802-FS3_L01.bam	SRR538255	@dbgap@:reads/SRP012001/SRS301332/SRX176220/SRR538255/SRR538255.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJPFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJPFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PAJPFB_NormalVsPrimary.maf.txt	3
TARGET-51-PAJPFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJPFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJPFB-01A-01D	DNA	EFO	SRS301332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJPFB-01A-01D GS01044-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G10	SRX176220	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJPFB-01A-01D GS01044-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48802-FS3_L01.bam	SRR538255	@dbgap@:reads/SRP012001/SRS301332/SRX176220/SRR538255/SRR538255.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJPFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJPFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAJPFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJPFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJPFB-01A-01D	DNA	EFO	SRS301332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJPFB-01A-01D GS01044-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G10	SRX176220	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJPFB-01A-01D GS01044-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48802-FS3_L01.bam	SRR538255	@dbgap@:reads/SRP012001/SRS301332/SRX176220/SRR538255/SRR538255.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJPFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJPFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAJPFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJPFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJPFB-01A-01D	DNA	EFO	SRS301332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJPFB-01A-01D GS01044-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G10	SRX176220	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJPFB-01A-01D GS01044-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48802-FS3_L01.bam	SRR538255	@dbgap@:reads/SRP012001/SRS301332/SRX176220/SRR538255/SRR538255.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJPFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJPFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAJPFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJPFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJPFB-01A-01D	DNA	EFO	SRS301332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJPFB-01A-01D GS01044-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G10	SRX176220	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJPFB-01A-01D GS01044-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48802-FS3_L01.bam	SRR538255	@dbgap@:reads/SRP012001/SRS301332/SRX176220/SRR538255/SRR538255.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJPFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJPFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJPFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJPFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJPFB-01A-01D	DNA	EFO	SRS301332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJPFB-01A-01D GS01044-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G10	SRX176220	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJPFB-01A-01D GS01044-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48802-FS3_L01.bam	SRR538255	@dbgap@:reads/SRP012001/SRS301332/SRX176220/SRR538255/SRR538255.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJPFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJPFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAJPFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJPFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJPFB-01A-01D	DNA	EFO	SRS301332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJPFB-01A-01D GS01044-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G10	SRX176220	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJPFB-01A-01D GS01044-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48802-FS3_L01.bam	SRR538255	@dbgap@:reads/SRP012001/SRS301332/SRX176220/SRR538255/SRR538255.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJPFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJPFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJPFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJPFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJPFB-01A-01D	DNA	EFO	SRS301332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJPFB-01A-01D GS01044-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G10	SRX176220	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJPFB-01A-01D GS01044-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48802-FS3_L01.bam	SRR538255	@dbgap@:reads/SRP012001/SRS301332/SRX176220/SRR538255/SRR538255.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJPFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJPFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJPFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJPFB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJPFB-11A-01D	DNA	EFO	SRS301334	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJPFB-11A-01D GS01044-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_H10	SRX176219	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJPFB-11A-01D GS01044-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48803-FS3_L03.bam	SRR538262	@dbgap@:reads/SRP012001/SRS301334/SRX176219/SRR538262/SRR538262.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PAJPFB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJPFB_NormalVsPrimary.png	4			
TARGET-51-PAJPFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJPFB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJPFB-11A-01D	DNA	EFO	SRS301334	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJPFB-11A-01D GS01044-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_H10	SRX176219	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJPFB-11A-01D GS01044-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48803-FS3_L03.bam	SRR538262	@dbgap@:reads/SRP012001/SRS301334/SRX176219/SRR538262/SRR538262.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJPFB_NormalVsPrimary.png	4			
TARGET-51-PAJPFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJPFB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJPFB-11A-01D	DNA	EFO	SRS301334	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJPFB-11A-01D GS01044-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_H10	SRX176219	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJPFB-11A-01D GS01044-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48803-FS3_L03.bam	SRR538262	@dbgap@:reads/SRP012001/SRS301334/SRX176219/SRR538262/SRR538262.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJPFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAJPFB_NormalVsPrimary.png	4			
TARGET-51-PAJPFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJPFB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJPFB-11A-01D	DNA	EFO	SRS301334	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJPFB-11A-01D GS01044-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_H10	SRX176219	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJPFB-11A-01D GS01044-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48803-FS3_L03.bam	SRR538262	@dbgap@:reads/SRP012001/SRS301334/SRX176219/SRR538262/SRR538262.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJPFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJPFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PAJPFB_NormalVsPrimary.maf.txt	3
TARGET-51-PAJPFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJPFB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJPFB-11A-01D	DNA	EFO	SRS301334	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJPFB-11A-01D GS01044-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_H10	SRX176219	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJPFB-11A-01D GS01044-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48803-FS3_L03.bam	SRR538262	@dbgap@:reads/SRP012001/SRS301334/SRX176219/SRR538262/SRR538262.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJPFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJPFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAJPFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJPFB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJPFB-11A-01D	DNA	EFO	SRS301334	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJPFB-11A-01D GS01044-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_H10	SRX176219	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJPFB-11A-01D GS01044-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48803-FS3_L03.bam	SRR538262	@dbgap@:reads/SRP012001/SRS301334/SRX176219/SRR538262/SRR538262.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJPFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJPFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAJPFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJPFB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJPFB-11A-01D	DNA	EFO	SRS301334	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJPFB-11A-01D GS01044-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_H10	SRX176219	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJPFB-11A-01D GS01044-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48803-FS3_L03.bam	SRR538262	@dbgap@:reads/SRP012001/SRS301334/SRX176219/SRR538262/SRR538262.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJPFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJPFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAJPFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJPFB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJPFB-11A-01D	DNA	EFO	SRS301334	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJPFB-11A-01D GS01044-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_H10	SRX176219	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJPFB-11A-01D GS01044-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48803-FS3_L03.bam	SRR538262	@dbgap@:reads/SRP012001/SRS301334/SRX176219/SRR538262/SRR538262.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJPFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJPFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJPFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJPFB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJPFB-11A-01D	DNA	EFO	SRS301334	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJPFB-11A-01D GS01044-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_H10	SRX176219	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJPFB-11A-01D GS01044-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48803-FS3_L03.bam	SRR538262	@dbgap@:reads/SRP012001/SRS301334/SRX176219/SRR538262/SRR538262.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJPFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJPFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAJPFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJPFB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJPFB-11A-01D	DNA	EFO	SRS301334	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJPFB-11A-01D GS01044-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_H10	SRX176219	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJPFB-11A-01D GS01044-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48803-FS3_L03.bam	SRR538262	@dbgap@:reads/SRP012001/SRS301334/SRX176219/SRR538262/SRR538262.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJPFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJPFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAJPFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAJPFB-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAJPFB-11A-01D	DNA	EFO	SRS301334	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAJPFB-11A-01D GS01044-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_H10	SRX176219	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAJPFB-11A-01D GS01044-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48803-FS3_L03.bam	SRR538262	@dbgap@:reads/SRP012001/SRS301334/SRX176219/SRR538262/SRR538262.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAJPFB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAJPFB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAKWMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAKWMM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAKWMM-01A-01D	DNA	EFO	SRS301335	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAKWMM-01A-01D GS01044-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A11	SRX170582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAKWMM-01A-01D GS01044-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48800-FS3_L01.bam	SRR525725	@dbgap@:reads/SRP012001/SRS301335/SRX170582/SRR525725/SRR525725.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PAKWMM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAKWMM_NormalVsPrimary.png	4			
TARGET-51-PAKWMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAKWMM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAKWMM-01A-01D	DNA	EFO	SRS301335	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAKWMM-01A-01D GS01044-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A11	SRX170582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAKWMM-01A-01D GS01044-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48800-FS3_L01.bam	SRR525725	@dbgap@:reads/SRP012001/SRS301335/SRX170582/SRR525725/SRR525725.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAKWMM_NormalVsPrimary.png	4			
TARGET-51-PAKWMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAKWMM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAKWMM-01A-01D	DNA	EFO	SRS301335	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAKWMM-01A-01D GS01044-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A11	SRX170582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAKWMM-01A-01D GS01044-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48800-FS3_L01.bam	SRR525725	@dbgap@:reads/SRP012001/SRS301335/SRX170582/SRR525725/SRR525725.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAKWMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAKWMM_NormalVsPrimary.png	4			
TARGET-51-PAKWMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAKWMM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAKWMM-01A-01D	DNA	EFO	SRS301335	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAKWMM-01A-01D GS01044-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A11	SRX170582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAKWMM-01A-01D GS01044-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48800-FS3_L01.bam	SRR525725	@dbgap@:reads/SRP012001/SRS301335/SRX170582/SRR525725/SRR525725.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAKWMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAKWMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PAKWMM_NormalVsPrimary.maf.txt	3
TARGET-51-PAKWMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAKWMM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAKWMM-01A-01D	DNA	EFO	SRS301335	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAKWMM-01A-01D GS01044-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A11	SRX170582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAKWMM-01A-01D GS01044-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48800-FS3_L01.bam	SRR525725	@dbgap@:reads/SRP012001/SRS301335/SRX170582/SRR525725/SRR525725.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAKWMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAKWMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAKWMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAKWMM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAKWMM-01A-01D	DNA	EFO	SRS301335	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAKWMM-01A-01D GS01044-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A11	SRX170582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAKWMM-01A-01D GS01044-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48800-FS3_L01.bam	SRR525725	@dbgap@:reads/SRP012001/SRS301335/SRX170582/SRR525725/SRR525725.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAKWMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAKWMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAKWMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAKWMM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAKWMM-01A-01D	DNA	EFO	SRS301335	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAKWMM-01A-01D GS01044-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A11	SRX170582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAKWMM-01A-01D GS01044-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48800-FS3_L01.bam	SRR525725	@dbgap@:reads/SRP012001/SRS301335/SRX170582/SRR525725/SRR525725.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAKWMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAKWMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAKWMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAKWMM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAKWMM-01A-01D	DNA	EFO	SRS301335	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAKWMM-01A-01D GS01044-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A11	SRX170582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAKWMM-01A-01D GS01044-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48800-FS3_L01.bam	SRR525725	@dbgap@:reads/SRP012001/SRS301335/SRX170582/SRR525725/SRR525725.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAKWMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAKWMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAKWMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAKWMM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAKWMM-01A-01D	DNA	EFO	SRS301335	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAKWMM-01A-01D GS01044-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A11	SRX170582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAKWMM-01A-01D GS01044-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48800-FS3_L01.bam	SRR525725	@dbgap@:reads/SRP012001/SRS301335/SRX170582/SRR525725/SRR525725.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAKWMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAKWMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAKWMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAKWMM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAKWMM-01A-01D	DNA	EFO	SRS301335	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAKWMM-01A-01D GS01044-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A11	SRX170582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAKWMM-01A-01D GS01044-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48800-FS3_L01.bam	SRR525725	@dbgap@:reads/SRP012001/SRS301335/SRX170582/SRR525725/SRR525725.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAKWMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAKWMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAKWMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAKWMM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAKWMM-01A-01D	DNA	EFO	SRS301335	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAKWMM-01A-01D GS01044-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A11	SRX170582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAKWMM-01A-01D GS01044-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48800-FS3_L01.bam	SRR525725	@dbgap@:reads/SRP012001/SRS301335/SRX170582/SRR525725/SRR525725.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAKWMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAKWMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAKWMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAKWMM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAKWMM-11A-01D	DNA	EFO	SRS301337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAKWMM-11A-01D GS01044-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_B11	SRX170581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAKWMM-11A-01D GS01044-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48801-FS3_L01.bam	SRR525732	@dbgap@:reads/SRP012001/SRS301337/SRX170581/SRR525732/SRR525732.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PAKWMM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAKWMM_NormalVsPrimary.png	4			
TARGET-51-PAKWMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAKWMM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAKWMM-11A-01D	DNA	EFO	SRS301337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAKWMM-11A-01D GS01044-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_B11	SRX170581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAKWMM-11A-01D GS01044-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48801-FS3_L01.bam	SRR525732	@dbgap@:reads/SRP012001/SRS301337/SRX170581/SRR525732/SRR525732.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAKWMM_NormalVsPrimary.png	4			
TARGET-51-PAKWMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAKWMM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAKWMM-11A-01D	DNA	EFO	SRS301337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAKWMM-11A-01D GS01044-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_B11	SRX170581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAKWMM-11A-01D GS01044-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48801-FS3_L01.bam	SRR525732	@dbgap@:reads/SRP012001/SRS301337/SRX170581/SRR525732/SRR525732.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAKWMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PAKWMM_NormalVsPrimary.png	4			
TARGET-51-PAKWMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAKWMM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAKWMM-11A-01D	DNA	EFO	SRS301337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAKWMM-11A-01D GS01044-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_B11	SRX170581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAKWMM-11A-01D GS01044-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48801-FS3_L01.bam	SRR525732	@dbgap@:reads/SRP012001/SRS301337/SRX170581/SRR525732/SRR525732.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAKWMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAKWMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PAKWMM_NormalVsPrimary.maf.txt	3
TARGET-51-PAKWMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAKWMM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAKWMM-11A-01D	DNA	EFO	SRS301337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAKWMM-11A-01D GS01044-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_B11	SRX170581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAKWMM-11A-01D GS01044-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48801-FS3_L01.bam	SRR525732	@dbgap@:reads/SRP012001/SRS301337/SRX170581/SRR525732/SRR525732.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAKWMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAKWMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAKWMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAKWMM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAKWMM-11A-01D	DNA	EFO	SRS301337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAKWMM-11A-01D GS01044-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_B11	SRX170581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAKWMM-11A-01D GS01044-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48801-FS3_L01.bam	SRR525732	@dbgap@:reads/SRP012001/SRS301337/SRX170581/SRR525732/SRR525732.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAKWMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAKWMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAKWMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAKWMM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAKWMM-11A-01D	DNA	EFO	SRS301337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAKWMM-11A-01D GS01044-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_B11	SRX170581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAKWMM-11A-01D GS01044-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48801-FS3_L01.bam	SRR525732	@dbgap@:reads/SRP012001/SRS301337/SRX170581/SRR525732/SRR525732.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAKWMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAKWMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PAKWMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAKWMM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAKWMM-11A-01D	DNA	EFO	SRS301337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAKWMM-11A-01D GS01044-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_B11	SRX170581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAKWMM-11A-01D GS01044-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48801-FS3_L01.bam	SRR525732	@dbgap@:reads/SRP012001/SRS301337/SRX170581/SRR525732/SRR525732.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAKWMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAKWMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAKWMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAKWMM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAKWMM-11A-01D	DNA	EFO	SRS301337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAKWMM-11A-01D GS01044-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_B11	SRX170581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAKWMM-11A-01D GS01044-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48801-FS3_L01.bam	SRR525732	@dbgap@:reads/SRP012001/SRS301337/SRX170581/SRR525732/SRR525732.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAKWMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAKWMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PAKWMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAKWMM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAKWMM-11A-01D	DNA	EFO	SRS301337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAKWMM-11A-01D GS01044-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_B11	SRX170581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAKWMM-11A-01D GS01044-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48801-FS3_L01.bam	SRR525732	@dbgap@:reads/SRP012001/SRS301337/SRX170581/SRR525732/SRR525732.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAKWMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAKWMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PAKWMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PAKWMM-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PAKWMM-11A-01D	DNA	EFO	SRS301337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PAKWMM-11A-01D GS01044-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_B11	SRX170581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PAKWMM-11A-01D GS01044-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48801-FS3_L01.bam	SRR525732	@dbgap@:reads/SRP012001/SRS301337/SRX170581/SRR525732/SRR525732.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PAKWMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PAKWMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALEIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALEIR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALEIR-01A-01D	DNA	EFO	SRS301338	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALEIR-01A-01D GS01044-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C11	SRX176208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALEIR-01A-01D GS01044-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48799-FS3_L03.bam	SRR537880	@dbgap@:reads/SRP012001/SRS301338/SRX176208/SRR537880/SRR537880.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PALEIR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALEIR_NormalVsPrimary.png	4			
TARGET-51-PALEIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALEIR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALEIR-01A-01D	DNA	EFO	SRS301338	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALEIR-01A-01D GS01044-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C11	SRX176208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALEIR-01A-01D GS01044-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48799-FS3_L03.bam	SRR537880	@dbgap@:reads/SRP012001/SRS301338/SRX176208/SRR537880/SRR537880.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALEIR_NormalVsPrimary.png	4			
TARGET-51-PALEIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALEIR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALEIR-01A-01D	DNA	EFO	SRS301338	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALEIR-01A-01D GS01044-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C11	SRX176208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALEIR-01A-01D GS01044-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48799-FS3_L03.bam	SRR537880	@dbgap@:reads/SRP012001/SRS301338/SRX176208/SRR537880/SRR537880.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALEIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALEIR_NormalVsPrimary.png	4			
TARGET-51-PALEIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALEIR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALEIR-01A-01D	DNA	EFO	SRS301338	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALEIR-01A-01D GS01044-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C11	SRX176208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALEIR-01A-01D GS01044-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48799-FS3_L03.bam	SRR537880	@dbgap@:reads/SRP012001/SRS301338/SRX176208/SRR537880/SRR537880.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALEIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALEIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PALEIR_NormalVsPrimary.maf.txt	3
TARGET-51-PALEIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALEIR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALEIR-01A-01D	DNA	EFO	SRS301338	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALEIR-01A-01D GS01044-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C11	SRX176208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALEIR-01A-01D GS01044-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48799-FS3_L03.bam	SRR537880	@dbgap@:reads/SRP012001/SRS301338/SRX176208/SRR537880/SRR537880.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALEIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALEIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PALEIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALEIR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALEIR-01A-01D	DNA	EFO	SRS301338	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALEIR-01A-01D GS01044-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C11	SRX176208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALEIR-01A-01D GS01044-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48799-FS3_L03.bam	SRR537880	@dbgap@:reads/SRP012001/SRS301338/SRX176208/SRR537880/SRR537880.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALEIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALEIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PALEIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALEIR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALEIR-01A-01D	DNA	EFO	SRS301338	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALEIR-01A-01D GS01044-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C11	SRX176208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALEIR-01A-01D GS01044-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48799-FS3_L03.bam	SRR537880	@dbgap@:reads/SRP012001/SRS301338/SRX176208/SRR537880/SRR537880.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALEIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALEIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PALEIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALEIR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALEIR-01A-01D	DNA	EFO	SRS301338	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALEIR-01A-01D GS01044-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C11	SRX176208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALEIR-01A-01D GS01044-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48799-FS3_L03.bam	SRR537880	@dbgap@:reads/SRP012001/SRS301338/SRX176208/SRR537880/SRR537880.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALEIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALEIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALEIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALEIR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALEIR-01A-01D	DNA	EFO	SRS301338	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALEIR-01A-01D GS01044-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C11	SRX176208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALEIR-01A-01D GS01044-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48799-FS3_L03.bam	SRR537880	@dbgap@:reads/SRP012001/SRS301338/SRX176208/SRR537880/SRR537880.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALEIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALEIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PALEIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALEIR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALEIR-01A-01D	DNA	EFO	SRS301338	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALEIR-01A-01D GS01044-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C11	SRX176208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALEIR-01A-01D GS01044-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48799-FS3_L03.bam	SRR537880	@dbgap@:reads/SRP012001/SRS301338/SRX176208/SRR537880/SRR537880.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALEIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALEIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALEIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALEIR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALEIR-01A-01D	DNA	EFO	SRS301338	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALEIR-01A-01D GS01044-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C11	SRX176208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALEIR-01A-01D GS01044-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48799-FS3_L03.bam	SRR537880	@dbgap@:reads/SRP012001/SRS301338/SRX176208/SRR537880/SRR537880.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALEIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALEIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALEIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALEIR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALEIR-10A-02D	DNA	EFO	SRS301339	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALEIR-10A-02D GS01044-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D11	SRX176207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALEIR-10A-02D GS01044-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48799-FS3_L01.bam	SRR537887	@dbgap@:reads/SRP012001/SRS301339/SRX176207/SRR537887/SRR537887.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PALEIR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALEIR_NormalVsPrimary.png	4			
TARGET-51-PALEIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALEIR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALEIR-10A-02D	DNA	EFO	SRS301339	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALEIR-10A-02D GS01044-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D11	SRX176207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALEIR-10A-02D GS01044-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48799-FS3_L01.bam	SRR537887	@dbgap@:reads/SRP012001/SRS301339/SRX176207/SRR537887/SRR537887.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALEIR_NormalVsPrimary.png	4			
TARGET-51-PALEIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALEIR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALEIR-10A-02D	DNA	EFO	SRS301339	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALEIR-10A-02D GS01044-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D11	SRX176207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALEIR-10A-02D GS01044-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48799-FS3_L01.bam	SRR537887	@dbgap@:reads/SRP012001/SRS301339/SRX176207/SRR537887/SRR537887.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALEIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALEIR_NormalVsPrimary.png	4			
TARGET-51-PALEIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALEIR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALEIR-10A-02D	DNA	EFO	SRS301339	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALEIR-10A-02D GS01044-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D11	SRX176207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALEIR-10A-02D GS01044-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48799-FS3_L01.bam	SRR537887	@dbgap@:reads/SRP012001/SRS301339/SRX176207/SRR537887/SRR537887.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALEIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALEIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PALEIR_NormalVsPrimary.maf.txt	3
TARGET-51-PALEIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALEIR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALEIR-10A-02D	DNA	EFO	SRS301339	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALEIR-10A-02D GS01044-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D11	SRX176207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALEIR-10A-02D GS01044-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48799-FS3_L01.bam	SRR537887	@dbgap@:reads/SRP012001/SRS301339/SRX176207/SRR537887/SRR537887.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALEIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALEIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PALEIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALEIR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALEIR-10A-02D	DNA	EFO	SRS301339	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALEIR-10A-02D GS01044-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D11	SRX176207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALEIR-10A-02D GS01044-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48799-FS3_L01.bam	SRR537887	@dbgap@:reads/SRP012001/SRS301339/SRX176207/SRR537887/SRR537887.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALEIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALEIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PALEIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALEIR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALEIR-10A-02D	DNA	EFO	SRS301339	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALEIR-10A-02D GS01044-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D11	SRX176207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALEIR-10A-02D GS01044-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48799-FS3_L01.bam	SRR537887	@dbgap@:reads/SRP012001/SRS301339/SRX176207/SRR537887/SRR537887.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALEIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALEIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PALEIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALEIR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALEIR-10A-02D	DNA	EFO	SRS301339	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALEIR-10A-02D GS01044-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D11	SRX176207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALEIR-10A-02D GS01044-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48799-FS3_L01.bam	SRR537887	@dbgap@:reads/SRP012001/SRS301339/SRX176207/SRR537887/SRR537887.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALEIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALEIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALEIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALEIR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALEIR-10A-02D	DNA	EFO	SRS301339	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALEIR-10A-02D GS01044-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D11	SRX176207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALEIR-10A-02D GS01044-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48799-FS3_L01.bam	SRR537887	@dbgap@:reads/SRP012001/SRS301339/SRX176207/SRR537887/SRR537887.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALEIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALEIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PALEIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALEIR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALEIR-10A-02D	DNA	EFO	SRS301339	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALEIR-10A-02D GS01044-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D11	SRX176207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALEIR-10A-02D GS01044-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48799-FS3_L01.bam	SRR537887	@dbgap@:reads/SRP012001/SRS301339/SRX176207/SRR537887/SRR537887.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALEIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALEIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALEIR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALEIR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALEIR-10A-02D	DNA	EFO	SRS301339	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALEIR-10A-02D GS01044-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D11	SRX176207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALEIR-10A-02D GS01044-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48799-FS3_L01.bam	SRR537887	@dbgap@:reads/SRP012001/SRS301339/SRX176207/SRR537887/SRR537887.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALEIR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALEIR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALFEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFEF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFEF-01A-01D	DNA	EFO	SRS301340	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFEF-01A-01D GS01044-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_E11	SRX176298	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFEF-01A-01D GS01044-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48945-FS3_L01.bam	SRR538327	@dbgap@:reads/SRP012001/SRS301340/SRX176298/SRR538327/SRR538327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PALFEF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALFEF_NormalVsPrimary.png	4			
TARGET-51-PALFEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFEF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFEF-01A-01D	DNA	EFO	SRS301340	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFEF-01A-01D GS01044-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_E11	SRX176298	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFEF-01A-01D GS01044-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48945-FS3_L01.bam	SRR538327	@dbgap@:reads/SRP012001/SRS301340/SRX176298/SRR538327/SRR538327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALFEF_NormalVsPrimary.png	4			
TARGET-51-PALFEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFEF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFEF-01A-01D	DNA	EFO	SRS301340	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFEF-01A-01D GS01044-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_E11	SRX176298	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFEF-01A-01D GS01044-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48945-FS3_L01.bam	SRR538327	@dbgap@:reads/SRP012001/SRS301340/SRX176298/SRR538327/SRR538327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFEF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALFEF_NormalVsPrimary.png	4			
TARGET-51-PALFEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFEF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFEF-01A-01D	DNA	EFO	SRS301340	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFEF-01A-01D GS01044-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_E11	SRX176298	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFEF-01A-01D GS01044-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48945-FS3_L01.bam	SRR538327	@dbgap@:reads/SRP012001/SRS301340/SRX176298/SRR538327/SRR538327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFEF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFEF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PALFEF_NormalVsPrimary.maf.txt	3
TARGET-51-PALFEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFEF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFEF-01A-01D	DNA	EFO	SRS301340	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFEF-01A-01D GS01044-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_E11	SRX176298	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFEF-01A-01D GS01044-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48945-FS3_L01.bam	SRR538327	@dbgap@:reads/SRP012001/SRS301340/SRX176298/SRR538327/SRR538327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFEF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFEF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PALFEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFEF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFEF-01A-01D	DNA	EFO	SRS301340	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFEF-01A-01D GS01044-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_E11	SRX176298	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFEF-01A-01D GS01044-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48945-FS3_L01.bam	SRR538327	@dbgap@:reads/SRP012001/SRS301340/SRX176298/SRR538327/SRR538327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFEF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFEF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PALFEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFEF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFEF-01A-01D	DNA	EFO	SRS301340	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFEF-01A-01D GS01044-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_E11	SRX176298	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFEF-01A-01D GS01044-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48945-FS3_L01.bam	SRR538327	@dbgap@:reads/SRP012001/SRS301340/SRX176298/SRR538327/SRR538327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFEF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFEF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PALFEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFEF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFEF-01A-01D	DNA	EFO	SRS301340	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFEF-01A-01D GS01044-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_E11	SRX176298	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFEF-01A-01D GS01044-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48945-FS3_L01.bam	SRR538327	@dbgap@:reads/SRP012001/SRS301340/SRX176298/SRR538327/SRR538327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFEF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFEF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALFEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFEF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFEF-01A-01D	DNA	EFO	SRS301340	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFEF-01A-01D GS01044-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_E11	SRX176298	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFEF-01A-01D GS01044-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48945-FS3_L01.bam	SRR538327	@dbgap@:reads/SRP012001/SRS301340/SRX176298/SRR538327/SRR538327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFEF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFEF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PALFEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFEF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFEF-01A-01D	DNA	EFO	SRS301340	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFEF-01A-01D GS01044-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_E11	SRX176298	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFEF-01A-01D GS01044-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48945-FS3_L01.bam	SRR538327	@dbgap@:reads/SRP012001/SRS301340/SRX176298/SRR538327/SRR538327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFEF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFEF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALFEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFEF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFEF-01A-01D	DNA	EFO	SRS301340	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFEF-01A-01D GS01044-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_E11	SRX176298	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFEF-01A-01D GS01044-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48945-FS3_L01.bam	SRR538327	@dbgap@:reads/SRP012001/SRS301340/SRX176298/SRR538327/SRR538327.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFEF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFEF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALFEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFEF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFEF-10A-02D	DNA	EFO	SRS301341	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFEF-10A-02D GS01044-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_F11	SRX176297	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFEF-10A-02D GS01044-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48946-FS3_L01.bam	SRR538335	@dbgap@:reads/SRP012001/SRS301341/SRX176297/SRR538335/SRR538335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PALFEF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALFEF_NormalVsPrimary.png	4			
TARGET-51-PALFEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFEF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFEF-10A-02D	DNA	EFO	SRS301341	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFEF-10A-02D GS01044-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_F11	SRX176297	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFEF-10A-02D GS01044-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48946-FS3_L01.bam	SRR538335	@dbgap@:reads/SRP012001/SRS301341/SRX176297/SRR538335/SRR538335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALFEF_NormalVsPrimary.png	4			
TARGET-51-PALFEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFEF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFEF-10A-02D	DNA	EFO	SRS301341	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFEF-10A-02D GS01044-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_F11	SRX176297	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFEF-10A-02D GS01044-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48946-FS3_L01.bam	SRR538335	@dbgap@:reads/SRP012001/SRS301341/SRX176297/SRR538335/SRR538335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFEF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALFEF_NormalVsPrimary.png	4			
TARGET-51-PALFEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFEF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFEF-10A-02D	DNA	EFO	SRS301341	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFEF-10A-02D GS01044-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_F11	SRX176297	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFEF-10A-02D GS01044-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48946-FS3_L01.bam	SRR538335	@dbgap@:reads/SRP012001/SRS301341/SRX176297/SRR538335/SRR538335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFEF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFEF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PALFEF_NormalVsPrimary.maf.txt	3
TARGET-51-PALFEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFEF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFEF-10A-02D	DNA	EFO	SRS301341	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFEF-10A-02D GS01044-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_F11	SRX176297	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFEF-10A-02D GS01044-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48946-FS3_L01.bam	SRR538335	@dbgap@:reads/SRP012001/SRS301341/SRX176297/SRR538335/SRR538335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFEF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFEF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PALFEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFEF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFEF-10A-02D	DNA	EFO	SRS301341	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFEF-10A-02D GS01044-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_F11	SRX176297	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFEF-10A-02D GS01044-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48946-FS3_L01.bam	SRR538335	@dbgap@:reads/SRP012001/SRS301341/SRX176297/SRR538335/SRR538335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFEF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFEF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PALFEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFEF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFEF-10A-02D	DNA	EFO	SRS301341	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFEF-10A-02D GS01044-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_F11	SRX176297	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFEF-10A-02D GS01044-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48946-FS3_L01.bam	SRR538335	@dbgap@:reads/SRP012001/SRS301341/SRX176297/SRR538335/SRR538335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFEF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFEF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PALFEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFEF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFEF-10A-02D	DNA	EFO	SRS301341	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFEF-10A-02D GS01044-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_F11	SRX176297	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFEF-10A-02D GS01044-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48946-FS3_L01.bam	SRR538335	@dbgap@:reads/SRP012001/SRS301341/SRX176297/SRR538335/SRR538335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFEF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFEF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALFEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFEF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFEF-10A-02D	DNA	EFO	SRS301341	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFEF-10A-02D GS01044-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_F11	SRX176297	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFEF-10A-02D GS01044-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48946-FS3_L01.bam	SRR538335	@dbgap@:reads/SRP012001/SRS301341/SRX176297/SRR538335/SRR538335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFEF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFEF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PALFEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFEF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFEF-10A-02D	DNA	EFO	SRS301341	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFEF-10A-02D GS01044-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_F11	SRX176297	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFEF-10A-02D GS01044-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48946-FS3_L01.bam	SRR538335	@dbgap@:reads/SRP012001/SRS301341/SRX176297/SRR538335/SRR538335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFEF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFEF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALFEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFEF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFEF-10A-02D	DNA	EFO	SRS301341	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFEF-10A-02D GS01044-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_F11	SRX176297	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFEF-10A-02D GS01044-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48946-FS3_L01.bam	SRR538335	@dbgap@:reads/SRP012001/SRS301341/SRX176297/SRR538335/SRR538335.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFEF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFEF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALFYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFYG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFYG-01A-01D	DNA	EFO	SRS301342	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFYG-01A-01D GS01044-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G11	SRX193545	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFYG-01A-01D GS01044-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48763-FS3_L01.bam	SRR585766	@dbgap@:reads/SRP012001/SRS301342/SRX193545/SRR585766/SRR585766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PALFYG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALFYG_NormalVsPrimary.png	4			
TARGET-51-PALFYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFYG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFYG-01A-01D	DNA	EFO	SRS301342	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFYG-01A-01D GS01044-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G11	SRX193545	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFYG-01A-01D GS01044-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48763-FS3_L01.bam	SRR585766	@dbgap@:reads/SRP012001/SRS301342/SRX193545/SRR585766/SRR585766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALFYG_NormalVsPrimary.png	4			
TARGET-51-PALFYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFYG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFYG-01A-01D	DNA	EFO	SRS301342	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFYG-01A-01D GS01044-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G11	SRX193545	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFYG-01A-01D GS01044-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48763-FS3_L01.bam	SRR585766	@dbgap@:reads/SRP012001/SRS301342/SRX193545/SRR585766/SRR585766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALFYG_NormalVsPrimary.png	4			
TARGET-51-PALFYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFYG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFYG-01A-01D	DNA	EFO	SRS301342	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFYG-01A-01D GS01044-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G11	SRX193545	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFYG-01A-01D GS01044-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48763-FS3_L01.bam	SRR585766	@dbgap@:reads/SRP012001/SRS301342/SRX193545/SRR585766/SRR585766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PALFYG_NormalVsPrimary.maf.txt	3
TARGET-51-PALFYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFYG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFYG-01A-01D	DNA	EFO	SRS301342	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFYG-01A-01D GS01044-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G11	SRX193545	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFYG-01A-01D GS01044-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48763-FS3_L01.bam	SRR585766	@dbgap@:reads/SRP012001/SRS301342/SRX193545/SRR585766/SRR585766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PALFYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFYG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFYG-01A-01D	DNA	EFO	SRS301342	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFYG-01A-01D GS01044-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G11	SRX193545	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFYG-01A-01D GS01044-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48763-FS3_L01.bam	SRR585766	@dbgap@:reads/SRP012001/SRS301342/SRX193545/SRR585766/SRR585766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PALFYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFYG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFYG-01A-01D	DNA	EFO	SRS301342	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFYG-01A-01D GS01044-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G11	SRX193545	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFYG-01A-01D GS01044-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48763-FS3_L01.bam	SRR585766	@dbgap@:reads/SRP012001/SRS301342/SRX193545/SRR585766/SRR585766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PALFYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFYG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFYG-01A-01D	DNA	EFO	SRS301342	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFYG-01A-01D GS01044-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G11	SRX193545	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFYG-01A-01D GS01044-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48763-FS3_L01.bam	SRR585766	@dbgap@:reads/SRP012001/SRS301342/SRX193545/SRR585766/SRR585766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALFYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFYG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFYG-01A-01D	DNA	EFO	SRS301342	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFYG-01A-01D GS01044-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G11	SRX193545	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFYG-01A-01D GS01044-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48763-FS3_L01.bam	SRR585766	@dbgap@:reads/SRP012001/SRS301342/SRX193545/SRR585766/SRR585766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PALFYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFYG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFYG-01A-01D	DNA	EFO	SRS301342	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFYG-01A-01D GS01044-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G11	SRX193545	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFYG-01A-01D GS01044-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48763-FS3_L01.bam	SRR585766	@dbgap@:reads/SRP012001/SRS301342/SRX193545/SRR585766/SRR585766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALFYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFYG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFYG-01A-01D	DNA	EFO	SRS301342	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFYG-01A-01D GS01044-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_G11	SRX193545	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFYG-01A-01D GS01044-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48763-FS3_L01.bam	SRR585766	@dbgap@:reads/SRP012001/SRS301342/SRX193545/SRR585766/SRR585766.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALFYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFYG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFYG-10A-02D	DNA	EFO	SRS301343	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFYG-10A-02D GS01089-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01089-CLS_G07	SRX193544	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFYG-10A-02D GS01089-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52595-FS3_L01.bam	SRR585773	@dbgap@:reads/SRP012001/SRS301343/SRX193544/SRR585773/SRR585773.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PALFYG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALFYG_NormalVsPrimary.png	4			
TARGET-51-PALFYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFYG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFYG-10A-02D	DNA	EFO	SRS301343	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFYG-10A-02D GS01089-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01089-CLS_G07	SRX193544	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFYG-10A-02D GS01089-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52595-FS3_L01.bam	SRR585773	@dbgap@:reads/SRP012001/SRS301343/SRX193544/SRR585773/SRR585773.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALFYG_NormalVsPrimary.png	4			
TARGET-51-PALFYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFYG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFYG-10A-02D	DNA	EFO	SRS301343	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFYG-10A-02D GS01089-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01089-CLS_G07	SRX193544	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFYG-10A-02D GS01089-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52595-FS3_L01.bam	SRR585773	@dbgap@:reads/SRP012001/SRS301343/SRX193544/SRR585773/SRR585773.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALFYG_NormalVsPrimary.png	4			
TARGET-51-PALFYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFYG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFYG-10A-02D	DNA	EFO	SRS301343	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFYG-10A-02D GS01089-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01089-CLS_G07	SRX193544	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFYG-10A-02D GS01089-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52595-FS3_L01.bam	SRR585773	@dbgap@:reads/SRP012001/SRS301343/SRX193544/SRR585773/SRR585773.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PALFYG_NormalVsPrimary.maf.txt	3
TARGET-51-PALFYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFYG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFYG-10A-02D	DNA	EFO	SRS301343	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFYG-10A-02D GS01089-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01089-CLS_G07	SRX193544	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFYG-10A-02D GS01089-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52595-FS3_L01.bam	SRR585773	@dbgap@:reads/SRP012001/SRS301343/SRX193544/SRR585773/SRR585773.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PALFYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFYG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFYG-10A-02D	DNA	EFO	SRS301343	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFYG-10A-02D GS01089-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01089-CLS_G07	SRX193544	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFYG-10A-02D GS01089-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52595-FS3_L01.bam	SRR585773	@dbgap@:reads/SRP012001/SRS301343/SRX193544/SRR585773/SRR585773.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PALFYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFYG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFYG-10A-02D	DNA	EFO	SRS301343	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFYG-10A-02D GS01089-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01089-CLS_G07	SRX193544	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFYG-10A-02D GS01089-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52595-FS3_L01.bam	SRR585773	@dbgap@:reads/SRP012001/SRS301343/SRX193544/SRR585773/SRR585773.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PALFYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFYG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFYG-10A-02D	DNA	EFO	SRS301343	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFYG-10A-02D GS01089-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01089-CLS_G07	SRX193544	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFYG-10A-02D GS01089-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52595-FS3_L01.bam	SRR585773	@dbgap@:reads/SRP012001/SRS301343/SRX193544/SRR585773/SRR585773.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALFYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFYG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFYG-10A-02D	DNA	EFO	SRS301343	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFYG-10A-02D GS01089-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01089-CLS_G07	SRX193544	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFYG-10A-02D GS01089-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52595-FS3_L01.bam	SRR585773	@dbgap@:reads/SRP012001/SRS301343/SRX193544/SRR585773/SRR585773.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PALFYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFYG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFYG-10A-02D	DNA	EFO	SRS301343	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFYG-10A-02D GS01089-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01089-CLS_G07	SRX193544	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFYG-10A-02D GS01089-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52595-FS3_L01.bam	SRR585773	@dbgap@:reads/SRP012001/SRS301343/SRX193544/SRR585773/SRR585773.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALFYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALFYG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALFYG-10A-02D	DNA	EFO	SRS301343	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALFYG-10A-02D GS01089-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM	GS01089-CLS_G07	SRX193544	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALFYG-10A-02D GS01089-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52595-FS3_L01.bam	SRR585773	@dbgap@:reads/SRP012001/SRS301343/SRX193544/SRR585773/SRR585773.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALFYG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALFYG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALKEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALKEI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALKEI-01A-01D	DNA	EFO	SRS301344	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALKEI-01A-01D GS01044-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A12	SRX176217	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALKEI-01A-01D GS01044-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48636-FS3_L01.bam	SRR538050	@dbgap@:reads/SRP012001/SRS301344/SRX176217/SRR538050/SRR538050.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PALKEI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALKEI_NormalVsPrimary.png	4			
TARGET-51-PALKEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALKEI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALKEI-01A-01D	DNA	EFO	SRS301344	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALKEI-01A-01D GS01044-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A12	SRX176217	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALKEI-01A-01D GS01044-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48636-FS3_L01.bam	SRR538050	@dbgap@:reads/SRP012001/SRS301344/SRX176217/SRR538050/SRR538050.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALKEI_NormalVsPrimary.png	4			
TARGET-51-PALKEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALKEI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALKEI-01A-01D	DNA	EFO	SRS301344	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALKEI-01A-01D GS01044-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A12	SRX176217	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALKEI-01A-01D GS01044-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48636-FS3_L01.bam	SRR538050	@dbgap@:reads/SRP012001/SRS301344/SRX176217/SRR538050/SRR538050.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALKEI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALKEI_NormalVsPrimary.png	4			
TARGET-51-PALKEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALKEI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALKEI-01A-01D	DNA	EFO	SRS301344	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALKEI-01A-01D GS01044-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A12	SRX176217	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALKEI-01A-01D GS01044-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48636-FS3_L01.bam	SRR538050	@dbgap@:reads/SRP012001/SRS301344/SRX176217/SRR538050/SRR538050.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALKEI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALKEI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PALKEI_NormalVsPrimary.maf.txt	3
TARGET-51-PALKEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALKEI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALKEI-01A-01D	DNA	EFO	SRS301344	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALKEI-01A-01D GS01044-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A12	SRX176217	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALKEI-01A-01D GS01044-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48636-FS3_L01.bam	SRR538050	@dbgap@:reads/SRP012001/SRS301344/SRX176217/SRR538050/SRR538050.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALKEI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALKEI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PALKEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALKEI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALKEI-01A-01D	DNA	EFO	SRS301344	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALKEI-01A-01D GS01044-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A12	SRX176217	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALKEI-01A-01D GS01044-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48636-FS3_L01.bam	SRR538050	@dbgap@:reads/SRP012001/SRS301344/SRX176217/SRR538050/SRR538050.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALKEI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALKEI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PALKEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALKEI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALKEI-01A-01D	DNA	EFO	SRS301344	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALKEI-01A-01D GS01044-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A12	SRX176217	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALKEI-01A-01D GS01044-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48636-FS3_L01.bam	SRR538050	@dbgap@:reads/SRP012001/SRS301344/SRX176217/SRR538050/SRR538050.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALKEI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALKEI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PALKEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALKEI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALKEI-01A-01D	DNA	EFO	SRS301344	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALKEI-01A-01D GS01044-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A12	SRX176217	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALKEI-01A-01D GS01044-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48636-FS3_L01.bam	SRR538050	@dbgap@:reads/SRP012001/SRS301344/SRX176217/SRR538050/SRR538050.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALKEI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALKEI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALKEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALKEI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALKEI-01A-01D	DNA	EFO	SRS301344	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALKEI-01A-01D GS01044-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A12	SRX176217	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALKEI-01A-01D GS01044-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48636-FS3_L01.bam	SRR538050	@dbgap@:reads/SRP012001/SRS301344/SRX176217/SRR538050/SRR538050.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALKEI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALKEI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PALKEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALKEI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALKEI-01A-01D	DNA	EFO	SRS301344	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALKEI-01A-01D GS01044-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A12	SRX176217	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALKEI-01A-01D GS01044-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48636-FS3_L01.bam	SRR538050	@dbgap@:reads/SRP012001/SRS301344/SRX176217/SRR538050/SRR538050.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALKEI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALKEI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALKEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALKEI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALKEI-01A-01D	DNA	EFO	SRS301344	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALKEI-01A-01D GS01044-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_A12	SRX176217	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALKEI-01A-01D GS01044-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48636-FS3_L01.bam	SRR538050	@dbgap@:reads/SRP012001/SRS301344/SRX176217/SRR538050/SRR538050.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALKEI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALKEI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALKEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALKEI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALKEI-10A-02D	DNA	EFO	SRS301345	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALKEI-10A-02D GS01044-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_B12	SRX176216	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALKEI-10A-02D GS01044-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48762-FS3_L01.bam	SRR538058	@dbgap@:reads/SRP012001/SRS301345/SRX176216/SRR538058/SRR538058.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PALKEI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALKEI_NormalVsPrimary.png	4			
TARGET-51-PALKEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALKEI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALKEI-10A-02D	DNA	EFO	SRS301345	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALKEI-10A-02D GS01044-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_B12	SRX176216	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALKEI-10A-02D GS01044-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48762-FS3_L01.bam	SRR538058	@dbgap@:reads/SRP012001/SRS301345/SRX176216/SRR538058/SRR538058.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALKEI_NormalVsPrimary.png	4			
TARGET-51-PALKEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALKEI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALKEI-10A-02D	DNA	EFO	SRS301345	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALKEI-10A-02D GS01044-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_B12	SRX176216	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALKEI-10A-02D GS01044-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48762-FS3_L01.bam	SRR538058	@dbgap@:reads/SRP012001/SRS301345/SRX176216/SRR538058/SRR538058.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALKEI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALKEI_NormalVsPrimary.png	4			
TARGET-51-PALKEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALKEI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALKEI-10A-02D	DNA	EFO	SRS301345	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALKEI-10A-02D GS01044-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_B12	SRX176216	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALKEI-10A-02D GS01044-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48762-FS3_L01.bam	SRR538058	@dbgap@:reads/SRP012001/SRS301345/SRX176216/SRR538058/SRR538058.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALKEI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALKEI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PALKEI_NormalVsPrimary.maf.txt	3
TARGET-51-PALKEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALKEI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALKEI-10A-02D	DNA	EFO	SRS301345	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALKEI-10A-02D GS01044-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_B12	SRX176216	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALKEI-10A-02D GS01044-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48762-FS3_L01.bam	SRR538058	@dbgap@:reads/SRP012001/SRS301345/SRX176216/SRR538058/SRR538058.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALKEI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALKEI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PALKEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALKEI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALKEI-10A-02D	DNA	EFO	SRS301345	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALKEI-10A-02D GS01044-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_B12	SRX176216	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALKEI-10A-02D GS01044-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48762-FS3_L01.bam	SRR538058	@dbgap@:reads/SRP012001/SRS301345/SRX176216/SRR538058/SRR538058.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALKEI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALKEI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PALKEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALKEI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALKEI-10A-02D	DNA	EFO	SRS301345	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALKEI-10A-02D GS01044-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_B12	SRX176216	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALKEI-10A-02D GS01044-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48762-FS3_L01.bam	SRR538058	@dbgap@:reads/SRP012001/SRS301345/SRX176216/SRR538058/SRR538058.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALKEI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALKEI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PALKEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALKEI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALKEI-10A-02D	DNA	EFO	SRS301345	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALKEI-10A-02D GS01044-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_B12	SRX176216	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALKEI-10A-02D GS01044-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48762-FS3_L01.bam	SRR538058	@dbgap@:reads/SRP012001/SRS301345/SRX176216/SRR538058/SRR538058.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALKEI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALKEI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALKEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALKEI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALKEI-10A-02D	DNA	EFO	SRS301345	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALKEI-10A-02D GS01044-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_B12	SRX176216	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALKEI-10A-02D GS01044-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48762-FS3_L01.bam	SRR538058	@dbgap@:reads/SRP012001/SRS301345/SRX176216/SRR538058/SRR538058.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALKEI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALKEI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PALKEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALKEI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALKEI-10A-02D	DNA	EFO	SRS301345	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALKEI-10A-02D GS01044-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_B12	SRX176216	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALKEI-10A-02D GS01044-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48762-FS3_L01.bam	SRR538058	@dbgap@:reads/SRP012001/SRS301345/SRX176216/SRR538058/SRR538058.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALKEI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALKEI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALKEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALKEI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALKEI-10A-02D	DNA	EFO	SRS301345	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALKEI-10A-02D GS01044-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_B12	SRX176216	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALKEI-10A-02D GS01044-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48762-FS3_L01.bam	SRR538058	@dbgap@:reads/SRP012001/SRS301345/SRX176216/SRR538058/SRR538058.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALKEI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALKEI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALLXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALLXV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALLXV-01A-01D	DNA	EFO	SRS311966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALLXV-01A-01D GS01044-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C12	SRX189935	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALLXV-01A-01D GS01044-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48937-FS3_L01.bam	SRR577281	@dbgap@:reads/SRP012001/SRS311966/SRX189935/SRR577281/SRR577281.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PALLXV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALLXV_NormalVsPrimary.png	4			
TARGET-51-PALLXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALLXV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALLXV-01A-01D	DNA	EFO	SRS311966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALLXV-01A-01D GS01044-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C12	SRX189935	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALLXV-01A-01D GS01044-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48937-FS3_L01.bam	SRR577281	@dbgap@:reads/SRP012001/SRS311966/SRX189935/SRR577281/SRR577281.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALLXV_NormalVsPrimary.png	4			
TARGET-51-PALLXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALLXV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALLXV-01A-01D	DNA	EFO	SRS311966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALLXV-01A-01D GS01044-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C12	SRX189935	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALLXV-01A-01D GS01044-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48937-FS3_L01.bam	SRR577281	@dbgap@:reads/SRP012001/SRS311966/SRX189935/SRR577281/SRR577281.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALLXV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALLXV_NormalVsPrimary.png	4			
TARGET-51-PALLXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALLXV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALLXV-01A-01D	DNA	EFO	SRS311966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALLXV-01A-01D GS01044-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C12	SRX189935	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALLXV-01A-01D GS01044-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48937-FS3_L01.bam	SRR577281	@dbgap@:reads/SRP012001/SRS311966/SRX189935/SRR577281/SRR577281.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALLXV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALLXV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PALLXV_NormalVsPrimary.maf.txt	3
TARGET-51-PALLXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALLXV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALLXV-01A-01D	DNA	EFO	SRS311966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALLXV-01A-01D GS01044-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C12	SRX189935	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALLXV-01A-01D GS01044-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48937-FS3_L01.bam	SRR577281	@dbgap@:reads/SRP012001/SRS311966/SRX189935/SRR577281/SRR577281.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALLXV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALLXV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PALLXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALLXV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALLXV-01A-01D	DNA	EFO	SRS311966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALLXV-01A-01D GS01044-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C12	SRX189935	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALLXV-01A-01D GS01044-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48937-FS3_L01.bam	SRR577281	@dbgap@:reads/SRP012001/SRS311966/SRX189935/SRR577281/SRR577281.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALLXV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALLXV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PALLXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALLXV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALLXV-01A-01D	DNA	EFO	SRS311966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALLXV-01A-01D GS01044-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C12	SRX189935	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALLXV-01A-01D GS01044-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48937-FS3_L01.bam	SRR577281	@dbgap@:reads/SRP012001/SRS311966/SRX189935/SRR577281/SRR577281.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALLXV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALLXV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PALLXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALLXV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALLXV-01A-01D	DNA	EFO	SRS311966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALLXV-01A-01D GS01044-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C12	SRX189935	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALLXV-01A-01D GS01044-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48937-FS3_L01.bam	SRR577281	@dbgap@:reads/SRP012001/SRS311966/SRX189935/SRR577281/SRR577281.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALLXV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALLXV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALLXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALLXV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALLXV-01A-01D	DNA	EFO	SRS311966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALLXV-01A-01D GS01044-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C12	SRX189935	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALLXV-01A-01D GS01044-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48937-FS3_L01.bam	SRR577281	@dbgap@:reads/SRP012001/SRS311966/SRX189935/SRR577281/SRR577281.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALLXV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALLXV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PALLXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALLXV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALLXV-01A-01D	DNA	EFO	SRS311966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALLXV-01A-01D GS01044-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C12	SRX189935	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALLXV-01A-01D GS01044-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48937-FS3_L01.bam	SRR577281	@dbgap@:reads/SRP012001/SRS311966/SRX189935/SRR577281/SRR577281.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALLXV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALLXV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALLXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALLXV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALLXV-01A-01D	DNA	EFO	SRS311966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALLXV-01A-01D GS01044-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_C12	SRX189935	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALLXV-01A-01D GS01044-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48937-FS3_L01.bam	SRR577281	@dbgap@:reads/SRP012001/SRS311966/SRX189935/SRR577281/SRR577281.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALLXV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALLXV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALLXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALLXV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALLXV-11A-01D	DNA	EFO	SRS311963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALLXV-11A-01D GS01044-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D12	SRX189934	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALLXV-11A-01D GS01044-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48947-FS3_L01.bam	SRR577288	@dbgap@:reads/SRP012001/SRS311963/SRX189934/SRR577288/SRR577288.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-CnvSegment-CGI:01	somaticCnvSegmentsDiploidBeta_TARGET-51-PALLXV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALLXV_NormalVsPrimary.png	4			
TARGET-51-PALLXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALLXV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALLXV-11A-01D	DNA	EFO	SRS311963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALLXV-11A-01D GS01044-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D12	SRX189934	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALLXV-11A-01D GS01044-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48947-FS3_L01.bam	SRR577288	@dbgap@:reads/SRP012001/SRS311963/SRX189934/SRR577288/SRR577288.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-Junction-CGI:01	ConcatenatedJunctionFileFinal_CCSK_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALLXV_NormalVsPrimary.png	4			
TARGET-51-PALLXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALLXV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALLXV-11A-01D	DNA	EFO	SRS311963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALLXV-11A-01D GS01044-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D12	SRX189934	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALLXV-11A-01D GS01044-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48947-FS3_L01.bam	SRR577288	@dbgap@:reads/SRP012001/SRS311963/SRX189934/SRR577288/SRR577288.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALLXV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-51-PALLXV_NormalVsPrimary.png	4			
TARGET-51-PALLXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALLXV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALLXV-11A-01D	DNA	EFO	SRS311963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALLXV-11A-01D GS01044-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D12	SRX189934	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALLXV-11A-01D GS01044-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48947-FS3_L01.bam	SRR577288	@dbgap@:reads/SRP012001/SRS311963/SRX189934/SRR577288/SRR577288.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALLXV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALLXV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-51-PALLXV_NormalVsPrimary.maf.txt	3
TARGET-51-PALLXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALLXV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALLXV-11A-01D	DNA	EFO	SRS311963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALLXV-11A-01D GS01044-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D12	SRX189934	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALLXV-11A-01D GS01044-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48947-FS3_L01.bam	SRR577288	@dbgap@:reads/SRP012001/SRS311963/SRX189934/SRR577288/SRR577288.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALLXV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALLXV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PALLXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALLXV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALLXV-11A-01D	DNA	EFO	SRS311963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALLXV-11A-01D GS01044-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D12	SRX189934	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALLXV-11A-01D GS01044-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48947-FS3_L01.bam	SRR577288	@dbgap@:reads/SRP012001/SRS311963/SRX189934/SRR577288/SRR577288.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALLXV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALLXV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PALLXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALLXV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALLXV-11A-01D	DNA	EFO	SRS311963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALLXV-11A-01D GS01044-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D12	SRX189934	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALLXV-11A-01D GS01044-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48947-FS3_L01.bam	SRR577288	@dbgap@:reads/SRP012001/SRS311963/SRX189934/SRR577288/SRR577288.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALLXV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALLXV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_CCSK_May_14_2014.tsv	3
TARGET-51-PALLXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALLXV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALLXV-11A-01D	DNA	EFO	SRS311963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALLXV-11A-01D GS01044-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D12	SRX189934	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALLXV-11A-01D GS01044-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48947-FS3_L01.bam	SRR577288	@dbgap@:reads/SRP012001/SRS311963/SRX189934/SRR577288/SRR577288.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALLXV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALLXV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALLXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALLXV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALLXV-11A-01D	DNA	EFO	SRS311963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALLXV-11A-01D GS01044-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D12	SRX189934	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALLXV-11A-01D GS01044-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48947-FS3_L01.bam	SRR577288	@dbgap@:reads/SRP012001/SRS311963/SRX189934/SRR577288/SRR577288.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALLXV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALLXV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_CCSK_May_14_2014.tsv	3
TARGET-51-PALLXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALLXV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALLXV-11A-01D	DNA	EFO	SRS311963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALLXV-11A-01D GS01044-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D12	SRX189934	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALLXV-11A-01D GS01044-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48947-FS3_L01.bam	SRR577288	@dbgap@:reads/SRP012001/SRS311963/SRX189934/SRR577288/SRR577288.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALLXV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALLXV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_CCSK_May_14_2014.tsv	3
TARGET-51-PALLXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Clear Cell Sarcoma of the Kidney	NCIt	Discovery	TARGET-51-PALLXV-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-51-PALLXV-11A-01D	DNA	EFO	SRS311963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-51-PALLXV-11A-01D GS01044-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM	GS01044-CLS_D12	SRX189934	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI	TARGET-51-PALLXV-11A-01D GS01044-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01	completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48947-FS3_L01.bam	SRR577288	@dbgap@:reads/SRP012001/SRS311963/SRX189934/SRR577288/SRR577288.sra	2	GRCh37-lite	completegenomics.com:Protocol:WGS-VariantCall-CGI:01	fullVcf_TARGET-51-PALLXV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-51-PALLXV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_CCSK_May_14_2014.tsv	3
