Source Name	Provider	Material Type	Term Source REF	Characteristics[Organism]	Term Source REF	Characteristics[Sex]	Term Source REF	Characteristics[DiseaseState]	Term Source REF	Comment[OCG Cohort]	Comment[Alternate ID]	Sample Name	Material Type	Term Source REF	Characteristics[OrganismPart]	Term Source REF	Description	Protocol REF	Performer	Extract Name	Material Type	Term Source REF	Comment[SRA_SAMPLE]	Comment[Alternate ID]	Protocol REF	Performer	Extract Name	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[LIBRARY_SELECTION]	Comment[NOMINAL_LENGTH]	Comment[LIBRARY_NAME]	Comment[SRA_EXPERIMENT]	Description	Protocol REF	Performer	Date	Assay Name	Technology Type	Term Source REF	Comment[SPOT_LENGTH]	Protocol REF	Parameter Value[Software Versions]	Protocol REF	Derived Array Data File	Comment[SRA_RUN]	Comment[SRA_FILE_URI]	Comment[OCG Data Level]	Comment[ASSEMBLY_NAME]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAA-01A-01D A44721 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44721	SRX610151	"Specific Capture analysis of Wilms tumor sample TARGET-50-CAAAAA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-CAAAAA-01A-01D A44721 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44721_1_lane_dupsFlagged.bam	SRR1424390	@dbgap@:reads/SRP012006/SRS118123/SRX610151/SRR1424390/SRR1424390.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-CAAAAA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-CAAAAA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-CAAAAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAIMXD	TARGET-50-CAAAAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAB-01A-01D	DNA	EFO	SRS118125		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAB-01A-01D A44740 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44740	SRX610144	"Specific Capture analysis of Wilms tumor sample TARGET-50-CAAAAB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-CAAAAB-01A-01D A44740 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44740_1_lane_dupsFlagged.bam	SRR1424400	@dbgap@:reads/SRP012006/SRS118125/SRX610144/SRR1424400/SRR1424400.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-CAAAAB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-CAAAAB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-01D	DNA	EFO	SRS118127		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAC-01A-01D A44738 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44738	SRX610068	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-CAAAAC-01A-01D A44738 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44738_1_lane_dupsFlagged.bam	SRR1424327	@dbgap@:reads/SRP012006/SRS118127/SRX610068/SRR1424327/SRR1424327.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-CAAAAC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-CAAAAC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-CAAAAC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADWYI	TARGET-50-CAAAAC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAC-01A-02D	DNA	EFO	SRS625271	TARGET-50-PADWYI-01A-01D	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAC-01A-02D A41195 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41195	SRX561641	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADWYI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-CAAAAC-01A-02D A41195 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41195_1_lane_dupsFlagged.bam	SRR1506710	@dbgap@:reads/SRP012006/SRS625271/SRX561641/SRR1506710/SRR1506710.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-CAAAAC-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-CAAAAC-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-CAAAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHZZL	TARGET-50-CAAAAH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAH-01A-01D	DNA	EFO	SRS190103		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAH-01A-01D A44722 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44722	SRX610046	"Specific Capture analysis of Wilms tumor sample TARGET-50-CAAAAH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-CAAAAH-01A-01D A44722 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44722_1_lane_dupsFlagged.bam	SRR1424375	@dbgap@:reads/SRP012006/SRS190103/SRX610046/SRR1424375/SRR1424375.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-CAAAAH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-CAAAAH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-CAAAAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation	TARGET-50-PADWMG	TARGET-50-CAAAAJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAJ-01A-01D	DNA	EFO	SRS190105		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAJ-01A-01D A44741 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44741	SRX610088	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-CAAAAJ-01A-01D A44741 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44741_1_lane_dupsFlagged.bam	SRR1424414	@dbgap@:reads/SRP012006/SRS190105/SRX610088/SRR1424414/SRR1424414.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-CAAAAJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-CAAAAJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-CAAAAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation	TARGET-50-PADWMG	TARGET-50-CAAAAJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAJ-01A-02D	DNA	EFO	SRS654064	TARGET-50-PADWMG-01A-01D	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAJ-01A-02D A44568 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44568	SRX646025	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADWMG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-CAAAAJ-01A-02D A44568 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44568_1_lane_dupsFlagged.bam	SRR1506853	@dbgap@:reads/SRP012006/SRS654064/SRX646025/SRR1506853/SRR1506853.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-CAAAAJ-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-CAAAAJ-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-01A-01D	DNA	EFO	SRS190107		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAL-01A-01D A44728 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44728	SRX610054	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-CAAAAL-01A-01D A44728 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44728_1_lane_dupsFlagged.bam	SRR1424407	@dbgap@:reads/SRP012006/SRS190107/SRX610054/SRR1424407/SRR1424407.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-CAAAAL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-CAAAAL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-CAAAAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADXUJ	TARGET-50-CAAAAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAL-01A-03D	DNA	EFO	SRS654023	TARGET-50-PADXUJ-01A-02D	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAL-01A-03D A44587 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44587	SRX645974	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADXUJ-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-CAAAAL-01A-03D A44587 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44587_1_lane_dupsFlagged.bam	SRR1506836	@dbgap@:reads/SRP012006/SRS654023/SRX645974/SRR1506836/SRR1506836.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-CAAAAL-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-CAAAAL-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-CAAAAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PADYGU	TARGET-50-CAAAAM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAM-01A-01D	DNA	EFO	SRS190109		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAM-01A-01D A44742 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44742	SRX610128	"Specific Capture analysis of Wilms tumor sample TARGET-50-CAAAAM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-CAAAAM-01A-01D A44742 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44742_1_lane_dupsFlagged.bam	SRR1424436	@dbgap@:reads/SRP012006/SRS190109/SRX610128/SRR1424436/SRR1424436.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-CAAAAM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-CAAAAM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-01A-01D	DNA	EFO	SRS190111		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAO-01A-01D A44729 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44729	SRX610105	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAO-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-CAAAAO-01A-01D A44729 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44729_1_lane_dupsFlagged.bam	SRR1424391	@dbgap@:reads/SRP012006/SRS190111/SRX610105/SRR1424391/SRR1424391.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-CAAAAO-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-CAAAAO-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-CAAAAO	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PACDYF	TARGET-50-CAAAAO-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAO-01A-02D	DNA	EFO	SRS654048	TARGET-50-PACDYF-01A-01D	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAO-01A-02D A44566 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44566	SRX646005	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PACDYF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-CAAAAO-01A-02D A44566 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44566_1_lane_dupsFlagged.bam	SRR1506769	@dbgap@:reads/SRP012006/SRS654048/SRX646005/SRR1506769/SRR1506769.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-CAAAAO-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-CAAAAO-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-CAAAAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAEHHM	TARGET-50-CAAAAP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAP-01A-01D	DNA	EFO	SRS160339		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAP-01A-01D A44734 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44734	SRX610129	"Specific Capture analysis of Wilms tumor sample TARGET-50-CAAAAP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-CAAAAP-01A-01D A44734 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44734_1_lane_dupsFlagged.bam	SRR1424402	@dbgap@:reads/SRP012006/SRS160339/SRX610129/SRR1424402/SRR1424402.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-CAAAAP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-CAAAAP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-CAAAAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAEHHM	TARGET-50-CAAAAP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAP-01A-02D	DNA	EFO	SRS654148	TARGET-50-PAEHHM-01A-01D	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAP-01A-02D A41262 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41262	SRX646110	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAEHHM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-CAAAAP-01A-02D A41262 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41262_1_lane_dupsFlagged.bam	SRR1506869	@dbgap@:reads/SRP012006/SRS654148/SRX646110/SRR1506869/SRR1506869.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-CAAAAP-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-CAAAAP-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-01D	DNA	EFO	SRS190113		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAQ-01A-01D A44739 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44739	SRX610100	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAQ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-CAAAAQ-01A-01D A44739 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44739_1_lane_dupsFlagged.bam	SRR1424361	@dbgap@:reads/SRP012006/SRS190113/SRX610100/SRR1424361/SRR1424361.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-CAAAAQ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-CAAAAQ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-CAAAAQ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAERTC	TARGET-50-CAAAAQ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAQ-01A-02D	DNA	EFO	SRS625133	TARGET-50-PAERTC-01A-01D	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAQ-01A-02D A33823 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	291	A33823	SRX561239	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAERTC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-CAAAAQ-01A-02D A33823 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33823_1_lane_dupsFlagged.bam	SRR1315634	@dbgap@:reads/SRP012006/SRS625133/SRX561239/SRR1315634/SRR1315634.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-CAAAAQ-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-CAAAAQ-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-01A-01D	DNA	EFO	SRS160341		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAR-01A-01D A44735 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44735	SRX610077	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-CAAAAR-01A-01D A44735 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44735_1_lane_dupsFlagged.bam	SRR1424423	@dbgap@:reads/SRP012006/SRS160341/SRX610077/SRR1424423/SRR1424423.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-CAAAAR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-CAAAAR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-01A-04D	DNA	EFO	SRS641143	TARGET-50-PAJNPS-01A-03D	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAR-01A-04D A44714 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44714	SRX610072	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNPS-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-CAAAAR-01A-04D A44714 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44714_1_lane_dupsFlagged.bam	SRR1424415	@dbgap@:reads/SRP012006/SRS641143/SRX610072/SRR1424415/SRR1424415.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-CAAAAR-01A-04D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-CAAAAR-01A-04D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-01A-01D	DNA	EFO	SRS375198		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAS-01A-01D A44743 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44743	SRX610073	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-CAAAAS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-CAAAAS-01A-01D A44743 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44743_1_lane_dupsFlagged.bam	SRR1424321	@dbgap@:reads/SRP012006/SRS375198/SRX610073/SRR1424321/SRR1424321.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-CAAAAS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-CAAAAS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-CAAAAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAKGHT	TARGET-50-CAAAAS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAS-01A-02D	DNA	EFO	SRS654032	TARGET-50-PAKGHT-01A-01D	bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-CAAAAS-01A-02D A44579 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44579	SRX645985	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKGHT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-CAAAAS-01A-02D A44579 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44579_1_lane_dupsFlagged.bam	SRR1506802	@dbgap@:reads/SRP012006/SRS654032/SRX645985/SRR1506802/SRR1506802.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-CAAAAS-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-CAAAAS-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PACFNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PACFNR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PACFNR-01A-01D	DNA	EFO	SRS620916		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PACFNR-01A-01D A33677 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A33677	SRX553624	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PACFNR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PACFNR-01A-01D A33677 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33677_1_lane_dupsFlagged.bam	SRR1299743	@dbgap@:reads/SRP012006/SRS620916/SRX553624/SRR1299743/SRR1299743.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PACFNR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PACFNR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADCRV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADCRV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADCRV-01A-01D	DNA	EFO	SRS625124		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADCRV-01A-01D A33820 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	281	A33820	SRX561231	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADCRV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PADCRV-01A-01D A33820 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33820_1_lane_dupsFlagged.bam	SRR1315672	@dbgap@:reads/SRP012006/SRS625124/SRX561231/SRR1315672/SRR1315672.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADCRV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADCRV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADDLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADDLL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADDLL-01A-01D	DNA	EFO	SRS625134		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADDLL-01A-01D A33821 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	292	A33821	SRX561240	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADDLL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PADDLL-01A-01D A33821 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33821_1_lane_dupsFlagged.bam	SRR1315646	@dbgap@:reads/SRP012006/SRS625134/SRX561240/SRR1315646/SRR1315646.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADDLL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADDLL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADVNN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADVNN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADVNN-01A-01D	DNA	EFO	SRS654133		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADVNN-01A-01D A41251 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41251	SRX646095	"Specific Capture analysis of Wilms tumor sample TARGET-50-PADVNN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PADVNN-01A-01D A41251 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41251_1_lane_dupsFlagged.bam	SRR1506892	@dbgap@:reads/SRP012006/SRS654133/SRX646095/SRR1506892/SRR1506892.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADVNN-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADVNN-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADWHM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADWHM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADWHM-01A-01D	DNA	EFO	SRS653235		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADWHM-01A-01D A41191 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41191	SRX645050	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADWHM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PADWHM-01A-01D A41191 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41191_1_lane_dupsFlagged.bam	SRR1506739	@dbgap@:reads/SRP012006/SRS653235/SRX645050/SRR1506739/SRR1506739.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADWHM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADWHM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADWKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADWKZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADWKZ-01A-01D	DNA	EFO	SRS654030		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADWKZ-01A-01D A44567 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44567	SRX645983	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADWKZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PADWKZ-01A-01D A44567 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44567_1_lane_dupsFlagged.bam	SRR1506814	@dbgap@:reads/SRP012006/SRS654030/SRX645983/SRR1506814/SRR1506814.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADWKZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADWKZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADWNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADWNP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADWNP-01A-02D	DNA	EFO	SRS654001		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADWNP-01A-02D A44584 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44584	SRX645947	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADWNP-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PADWNP-01A-02D A44584 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44584_1_lane_dupsFlagged.bam	SRR1506846	@dbgap@:reads/SRP012006/SRS654001/SRX645947/SRR1506846/SRR1506846.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADWNP-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADWNP-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADWUE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADWUE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADWUE-01A-01D	DNA	EFO	SRS625280		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADWUE-01A-01D A41193 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41193	SRX561650	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADWUE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PADWUE-01A-01D A41193 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41193_1_lane_dupsFlagged.bam	SRR1506733	@dbgap@:reads/SRP012006/SRS625280/SRX561650/SRR1506733/SRR1506733.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADWUE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADWUE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADWXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADWXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADWXC-01A-03D	DNA	EFO	SRS641164		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADWXC-01A-03D A44681 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44681	SRX610097	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADWXC-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PADWXC-01A-03D A44681 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44681_1_lane_dupsFlagged.bam	SRR1424427	@dbgap@:reads/SRP012006/SRS641164/SRX610097/SRR1424427/SRR1424427.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADWXC-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADWXC-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADWYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADWYJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADWYJ-01A-01D	DNA	EFO	SRS625309		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADWYJ-01A-01D A41194 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41194	SRX561679	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADWYJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PADWYJ-01A-01D A41194 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41194_1_lane_dupsFlagged.bam	SRR1506693	@dbgap@:reads/SRP012006/SRS625309/SRX561679/SRR1506693/SRR1506693.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADWYJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADWYJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADWYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADWYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADWYZ-01A-01D	DNA	EFO	SRS620929		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADWYZ-01A-01D A33678 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A33678	SRX553637	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADWYZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PADWYZ-01A-01D A33678 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33678_1_lane_dupsFlagged.bam	SRR1299745	@dbgap@:reads/SRP012006/SRS620929/SRX553637/SRR1299745/SRR1299745.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADWYZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADWYZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADXAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADXAY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXAY-01A-02D	DNA	EFO	SRS654134		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADXAY-01A-02D A41252 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41252	SRX646096	"Specific Capture analysis of Wilms tumor sample TARGET-50-PADXAY-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PADXAY-01A-02D A41252 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41252_1_lane_dupsFlagged.bam	SRR1506934	@dbgap@:reads/SRP012006/SRS654134/SRX646096/SRR1506934/SRR1506934.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADXAY-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADXAY-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADXBA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADXBA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXBA-01A-01D	DNA	EFO	SRS654115		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADXBA-01A-01D A41253 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41253	SRX646077	"Specific Capture analysis of Wilms tumor sample TARGET-50-PADXBA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PADXBA-01A-01D A41253 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41253_1_lane_dupsFlagged.bam	SRR1506875	@dbgap@:reads/SRP012006/SRS654115/SRX646077/SRR1506875/SRR1506875.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADXBA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADXBA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADXBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADXBG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXBG-01A-02D	DNA	EFO	SRS654010		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADXBG-01A-02D A44585 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A44585	SRX645957	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADXBG-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-50-PADXBG-01A-02D A44585 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44585_1_lane_dupsFlagged.bam	SRR1506810	@dbgap@:reads/SRP012006/SRS654010/SRX645957/SRR1506810/SRR1506810.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADXBG-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADXBG-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADXIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADXIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXIP-01A-01D	DNA	EFO	SRS625284		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADXIP-01A-01D A41203 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41203	SRX561654	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADXIP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PADXIP-01A-01D A41203 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41203_1_lane_dupsFlagged.bam	SRR1506737	@dbgap@:reads/SRP012006/SRS625284/SRX561654/SRR1506737/SRR1506737.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADXIP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADXIP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADXJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADXJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXJK-01A-01D	DNA	EFO	SRS625248		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADXJK-01A-01D A41204 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41204	SRX561618	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADXJK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PADXJK-01A-01D A41204 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41204_1_lane_dupsFlagged.bam	SRR1506687	@dbgap@:reads/SRP012006/SRS625248/SRX561618/SRR1506687/SRR1506687.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADXJK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADXJK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADXJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADXJZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXJZ-01A-02D	DNA	EFO	SRS654067		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADXJZ-01A-02D A44586 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A44586	SRX646028	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADXJZ-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-50-PADXJZ-01A-02D A44586 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44586_1_lane_dupsFlagged.bam	SRR1506820	@dbgap@:reads/SRP012006/SRS654067/SRX646028/SRR1506820/SRR1506820.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADXJZ-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADXJZ-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADXRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADXRC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXRC-01A-01D	DNA	EFO	SRS653228		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADXRC-01A-01D A41208 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41208	SRX645043	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADXRC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PADXRC-01A-01D A41208 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41208_1_lane_dupsFlagged.bam	SRR1506725	@dbgap@:reads/SRP012006/SRS653228/SRX645043/SRR1506725/SRR1506725.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADXRC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADXRC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADXWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADXWJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXWJ-01A-01D	DNA	EFO	SRS625306		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADXWJ-01A-01D A41210 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41210	SRX561676	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADXWJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PADXWJ-01A-01D A41210 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41210_1_lane_dupsFlagged.bam	SRR1506702	@dbgap@:reads/SRP012006/SRS625306/SRX561676/SRR1506702/SRR1506702.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADXWJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADXWJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADXYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADXYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXYT-01A-03D	DNA	EFO	SRS641188		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADXYT-01A-03D A44682 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44682	SRX610127	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADXYT-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PADXYT-01A-03D A44682 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44682_1_lane_dupsFlagged.bam	SRR1424352	@dbgap@:reads/SRP012006/SRS641188/SRX610127/SRR1424352/SRR1424352.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADXYT-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADXYT-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADYAS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADYAS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADYAS-01A-02D	DNA	EFO	SRS654000		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADYAS-01A-02D A44588 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44588	SRX645946	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADYAS-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PADYAS-01A-02D A44588 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44588_1_lane_dupsFlagged.bam	SRR1506799	@dbgap@:reads/SRP012006/SRS654000/SRX645946/SRR1506799/SRR1506799.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADYAS-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADYAS-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADYGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADYGD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADYGD-01A-03D	DNA	EFO	SRS641140		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADYGD-01A-03D A44683 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44683	SRX610067	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADYGD-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PADYGD-01A-03D A44683 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44683_1_lane_dupsFlagged.bam	SRR1424417	@dbgap@:reads/SRP012006/SRS641140/SRX610067/SRR1424417/SRR1424417.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADYGD-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADYGD-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADYGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADYGE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADYGE-01A-01D	DNA	EFO	SRS654123		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADYGE-01A-01D A41254 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41254	SRX646086	"Specific Capture analysis of Wilms tumor sample TARGET-50-PADYGE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PADYGE-01A-01D A41254 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41254_1_lane_dupsFlagged.bam	SRR1506908	@dbgap@:reads/SRP012006/SRS654123/SRX646086/SRR1506908/SRR1506908.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADYGE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADYGE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADYHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADYHT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADYHT-01A-01D	DNA	EFO	SRS625122		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADYHT-01A-01D A33769 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	301	A33769	SRX561228	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADYHT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PADYHT-01A-01D A33769 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33769_1_lane_dupsFlagged.bam	SRR1315692	@dbgap@:reads/SRP012006/SRS625122/SRX561228/SRR1315692/SRR1315692.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADYHT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADYHT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADYJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADYJI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADYJI-01A-01D	DNA	EFO	SRS654063		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADYJI-01A-01D A44569 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A44569	SRX646023	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADYJI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-50-PADYJI-01A-01D A44569 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44569_1_lane_dupsFlagged.bam	SRR1506774	@dbgap@:reads/SRP012006/SRS654063/SRX646023/SRR1506774/SRR1506774.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADYJI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADYJI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADYPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADYPH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADYPH-01A-01D	DNA	EFO	SRS654090		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADYPH-01A-01D A41255 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41255	SRX646053	"Specific Capture analysis of Wilms tumor sample TARGET-50-PADYPH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PADYPH-01A-01D A41255 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41255_1_lane_dupsFlagged.bam	SRR1506929	@dbgap@:reads/SRP012006/SRS654090/SRX646053/SRR1506929/SRR1506929.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADYPH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADYPH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADYRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADYRW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADYRW-01A-02D	DNA	EFO	SRS625100		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADYRW-01A-02D A33772 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	281	A33772	SRX561206	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADYRW-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PADYRW-01A-02D A33772 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33772_1_lane_dupsFlagged.bam	SRR1315632	@dbgap@:reads/SRP012006/SRS625100/SRX561206/SRR1315632/SRR1315632.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADYRW-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADYRW-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADYUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADYUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADYUS-01A-01D	DNA	EFO	SRS625129		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADYUS-01A-01D A33773 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	292	A33773	SRX561235	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADYUS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PADYUS-01A-01D A33773 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33773_1_lane_dupsFlagged.bam	SRR1315657	@dbgap@:reads/SRP012006/SRS625129/SRX561235/SRR1315657/SRR1315657.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADYUS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADYUS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADYVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADYVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADYVH-01A-01D	DNA	EFO	SRS625121		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADYVH-01A-01D A33775 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	291	A33775	SRX561227	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADYVH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PADYVH-01A-01D A33775 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33775_1_lane_dupsFlagged.bam	SRR1315704	@dbgap@:reads/SRP012006/SRS625121/SRX561227/SRR1315704/SRR1315704.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADYVH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADYVH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADYWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADYWB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADYWB-01A-01D	DNA	EFO	SRS625115		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADYWB-01A-01D A33777 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	301	A33777	SRX561221	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADYWB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PADYWB-01A-01D A33777 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33777_1_lane_dupsFlagged.bam	SRR1315630	@dbgap@:reads/SRP012006/SRS625115/SRX561221/SRR1315630/SRR1315630.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADYWB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADYWB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADYWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADYWT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADYWT-01A-01D	DNA	EFO	SRS654117		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADYWT-01A-01D A41256 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41256	SRX646080	"Specific Capture analysis of Wilms tumor sample TARGET-50-PADYWT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PADYWT-01A-01D A41256 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41256_1_lane_dupsFlagged.bam	SRR1506864	@dbgap@:reads/SRP012006/SRS654117/SRX646080/SRR1506864/SRR1506864.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADYWT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADYWT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADYYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADYYC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADYYC-01A-02D	DNA	EFO	SRS654083		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADYYC-01A-02D A41257 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41257	SRX646045	"Specific Capture analysis of Wilms tumor sample TARGET-50-PADYYC-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PADYYC-01A-02D A41257 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41257_1_lane_dupsFlagged.bam	SRR1506914	@dbgap@:reads/SRP012006/SRS654083/SRX646045/SRR1506914/SRR1506914.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADYYC-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADYYC-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADZCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADZCH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZCH-01A-01D	DNA	EFO	SRS625114		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADZCH-01A-01D A33782 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	292	A33782	SRX561220	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADZCH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PADZCH-01A-01D A33782 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33782_1_lane_dupsFlagged.bam	SRR1315707	@dbgap@:reads/SRP012006/SRS625114/SRX561220/SRR1315707/SRR1315707.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADZCH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADZCH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADZNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADZNG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZNG-01A-03D	DNA	EFO	SRS641158		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADZNG-01A-03D A44684 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44684	SRX610091	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADZNG-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PADZNG-01A-03D A44684 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44684_1_lane_dupsFlagged.bam	SRR1424426	@dbgap@:reads/SRP012006/SRS641158/SRX610091/SRR1424426/SRR1424426.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADZNG-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADZNG-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADZNH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADZNH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZNH-01A-01D	DNA	EFO	SRS625037		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADZNH-01A-01D A33749 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A33749	SRX561143	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADZNH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PADZNH-01A-01D A33749 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33749_1_lane_dupsFlagged.bam	SRR1315610	@dbgap@:reads/SRP012006/SRS625037/SRX561143/SRR1315610/SRR1315610.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADZNH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADZNH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADZPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADZPL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZPL-01A-01D	DNA	EFO	SRS625152		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADZPL-01A-01D A33787 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	281	A33787	SRX561258	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADZPL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PADZPL-01A-01D A33787 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33787_1_lane_dupsFlagged.bam	SRR1315695	@dbgap@:reads/SRP012006/SRS625152/SRX561258/SRR1315695/SRR1315695.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADZPL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADZPL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADZSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADZSS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZSS-01A-02D	DNA	EFO	SRS654020		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADZSS-01A-02D A44589 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44589	SRX645971	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADZSS-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PADZSS-01A-02D A44589 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44589_1_lane_dupsFlagged.bam	SRR1506795	@dbgap@:reads/SRP012006/SRS654020/SRX645971/SRR1506795/SRR1506795.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADZSS-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADZSS-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADZTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADZTP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZTP-01A-01D	DNA	EFO	SRS654122		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADZTP-01A-01D A41258 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41258	SRX646085	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADZTP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PADZTP-01A-01D A41258 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41258_1_lane_dupsFlagged.bam	SRR1506923	@dbgap@:reads/SRP012006/SRS654122/SRX646085/SRR1506923/SRR1506923.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADZTP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADZTP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADZUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADZUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZUB-01A-02D	DNA	EFO	SRS625107		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADZUB-01A-02D A33788 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	281	A33788	SRX561213	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PADZUB-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PADZUB-01A-02D A33788 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33788_1_lane_dupsFlagged.bam	SRR1315641	@dbgap@:reads/SRP012006/SRS625107/SRX561213/SRR1315641/SRR1315641.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADZUB-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADZUB-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PADZUD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PADZUD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZUD-01A-01D	DNA	EFO	SRS654156		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PADZUD-01A-01D A41259 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41259	SRX646118	"Specific Capture analysis of Wilms tumor sample TARGET-50-PADZUD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PADZUD-01A-01D A41259 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41259_1_lane_dupsFlagged.bam	SRR1506867	@dbgap@:reads/SRP012006/SRS654156/SRX646118/SRR1506867/SRR1506867.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PADZUD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PADZUD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAEAFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEAFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEAFB-01A-02D	DNA	EFO	SRS625119		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEAFB-01A-02D A33793 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	301	A33793	SRX561225	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAEAFB-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAEAFB-01A-02D A33793 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33793_1_lane_dupsFlagged.bam	SRR1315651	@dbgap@:reads/SRP012006/SRS625119/SRX561225/SRR1315651/SRR1315651.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAEAFB-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAEAFB-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAEAFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAEAFZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEAFZ-01A-01D	DNA	EFO	SRS625186		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEAFZ-01A-01D A33794 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	301	A33794	SRX561292	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAEAFZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAEAFZ-01A-01D A33794 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33794_1_lane_dupsFlagged.bam	SRR1315699	@dbgap@:reads/SRP012006/SRS625186/SRX561292/SRR1315699/SRR1315699.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAEAFZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAEAFZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAEALI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAEALI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEALI-01A-01D	DNA	EFO	SRS625109		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEALI-01A-01D A33798 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	292	A33798	SRX561215	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAEALI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAEALI-01A-01D A33798 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33798_1_lane_dupsFlagged.bam	SRR1315649	@dbgap@:reads/SRP012006/SRS625109/SRX561215/SRR1315649/SRR1315649.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAEALI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAEALI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAEALK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAEALK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEALK-01A-02D	DNA	EFO	SRS625055		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEALK-01A-02D A33750 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A33750	SRX561162	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAEALK-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAEALK-01A-02D A33750 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33750_1_lane_dupsFlagged.bam	SRR1315553	@dbgap@:reads/SRP012006/SRS625055/SRX561162/SRR1315553/SRR1315553.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAEALK-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAEALK-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAEAMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAEAMT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEAMT-01A-03D	DNA	EFO	SRS654110		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEAMT-01A-03D A41260 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41260	SRX646073	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAEAMT-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAEAMT-01A-03D A41260 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41260_1_lane_dupsFlagged.bam	SRR1506933	@dbgap@:reads/SRP012006/SRS654110/SRX646073/SRR1506933/SRR1506933.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAEAMT-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAEAMT-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAEAND	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAEAND-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEAND-01A-02D	DNA	EFO	SRS654009		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEAND-01A-02D A44590 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44590	SRX645955	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAEAND-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAEAND-01A-02D A44590 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44590_1_lane_dupsFlagged.bam	SRR1506822	@dbgap@:reads/SRP012006/SRS654009/SRX645955/SRR1506822/SRR1506822.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAEAND-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAEAND-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAEBXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEBXA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEBXA-01A-01D	DNA	EFO	SRS118129		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEBXA-01A-01D A44731 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44731	SRX610130	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAEBXA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAEBXA-01A-01D A44731 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44731_1_lane_dupsFlagged.bam	SRR1424337	@dbgap@:reads/SRP012006/SRS118129/SRX610130/SRR1424337/SRR1424337.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAEBXA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAEBXA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAECFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAECFM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECFM-01A-01D	DNA	EFO	SRS620921		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAECFM-01A-01D A33679 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	314	A33679	SRX553631	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAECFM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAECFM-01A-01D A33679 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33679_1_lane_dupsFlagged.bam	SRR1299737	@dbgap@:reads/SRP012006/SRS620921/SRX553631/SRR1299737/SRR1299737.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAECFM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAECFM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAECHG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAECHG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECHG-01A-01D	DNA	EFO	SRS625105		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAECHG-01A-01D A33801 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	301	A33801	SRX561211	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAECHG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAECHG-01A-01D A33801 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33801_1_lane_dupsFlagged.bam	SRR1315705	@dbgap@:reads/SRP012006/SRS625105/SRX561211/SRR1315705/SRR1315705.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAECHG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAECHG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAECIE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAECIE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECIE-01A-01D	DNA	EFO	SRS625140		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAECIE-01A-01D A33802 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	301	A33802	SRX561246	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAECIE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAECIE-01A-01D A33802 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33802_1_lane_dupsFlagged.bam	SRR1315647	@dbgap@:reads/SRP012006/SRS625140/SRX561246/SRR1315647/SRR1315647.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAECIE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAECIE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAECJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAECJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJB-01A-01D	DNA	EFO	SRS190117		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAECJB-01A-01D A41384 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41384	SRX608409	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAECJB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-50-PAECJB-01A-01D A41384 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41384_1_lane_dupsFlagged.bam	SRR1422146	@dbgap@:reads/SRP012006/SRS190117/SRX608409/SRR1422146/SRR1422146.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAECJB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAECJB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAECJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAECJY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECJY-01A-01D	DNA	EFO	SRS625148		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAECJY-01A-01D A33803 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	281	A33803	SRX561254	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAECJY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAECJY-01A-01D A33803 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33803_1_lane_dupsFlagged.bam	SRR1315688	@dbgap@:reads/SRP012006/SRS625148/SRX561254/SRR1315688/SRR1315688.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAECJY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAECJY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAECPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAECPC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECPC-01A-01D	DNA	EFO	SRS625069		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAECPC-01A-01D A33751 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	314	A33751	SRX561175	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAECPC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAECPC-01A-01D A33751 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33751_1_lane_dupsFlagged.bam	SRR1315581	@dbgap@:reads/SRP012006/SRS625069/SRX561175/SRR1315581/SRR1315581.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAECPC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAECPC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAECTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAECTY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECTY-01A-02D	DNA	EFO	SRS654042		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAECTY-01A-02D A44591 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44591	SRX645997	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAECTY-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAECTY-01A-02D A44591 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44591_1_lane_dupsFlagged.bam	SRR1506855	@dbgap@:reads/SRP012006/SRS654042/SRX645997/SRR1506855/SRR1506855.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAECTY-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAECTY-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAECWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAECWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAECWU-01A-02D	DNA	EFO	SRS654002		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAECWU-01A-02D A44592 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44592	SRX645948	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAECWU-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAECWU-01A-02D A44592 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44592_1_lane_dupsFlagged.bam	SRR1506806	@dbgap@:reads/SRP012006/SRS654002/SRX645948/SRR1506806/SRR1506806.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAECWU-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAECWU-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAEDJU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAEDJU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEDJU-01A-01D	DNA	EFO	SRS654154		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEDJU-01A-01D A41261 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41261	SRX646116	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAEDJU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAEDJU-01A-01D A41261 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41261_1_lane_dupsFlagged.bam	SRR1506887	@dbgap@:reads/SRP012006/SRS654154/SRX646116/SRR1506887/SRR1506887.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAEDJU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAEDJU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAEEPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAEEPR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEEPR-01A-01D	DNA	EFO	SRS625103		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEEPR-01A-01D A33808 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	291	A33808	SRX561209	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAEEPR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAEEPR-01A-01D A33808 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33808_1_lane_dupsFlagged.bam	SRR1315660	@dbgap@:reads/SRP012006/SRS625103/SRX561209/SRR1315660/SRR1315660.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAEEPR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAEEPR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAEFPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAEFPT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEFPT-01A-02D	DNA	EFO	SRS654046		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEFPT-01A-02D A44593 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A44593	SRX646001	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAEFPT-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-50-PAEFPT-01A-02D A44593 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44593_1_lane_dupsFlagged.bam	SRR1506782	@dbgap@:reads/SRP012006/SRS654046/SRX646001/SRR1506782/SRR1506782.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAEFPT-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAEFPT-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAEHDE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAEHDE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEHDE-01A-02D	DNA	EFO	SRS653995		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEHDE-01A-02D A44594 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A44594	SRX645941	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAEHDE-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-50-PAEHDE-01A-02D A44594 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44594_1_lane_dupsFlagged.bam	SRR1506781	@dbgap@:reads/SRP012006/SRS653995/SRX645941/SRR1506781/SRR1506781.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAEHDE-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAEHDE-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAEHLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAEHLE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEHLE-01A-01D	DNA	EFO	SRS625038		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEHLE-01A-01D A33752 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	314	A33752	SRX561144	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAEHLE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAEHLE-01A-01D A33752 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33752_1_lane_dupsFlagged.bam	SRR1315588	@dbgap@:reads/SRP012006/SRS625038/SRX561144/SRR1315588/SRR1315588.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAEHLE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAEHLE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAEHLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAEHLJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEHLJ-01A-02D	DNA	EFO	SRS625054		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEHLJ-01A-02D A33753 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	287	A33753	SRX561160	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAEHLJ-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAEHLJ-01A-02D A33753 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33753_1_lane_dupsFlagged.bam	SRR1315555	@dbgap@:reads/SRP012006/SRS625054/SRX561160/SRR1315555/SRR1315555.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAEHLJ-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAEHLJ-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAEIGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAEIGE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEIGE-01A-03D	DNA	EFO	SRS641119		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEIGE-01A-03D A44685 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44685	SRX610038	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAEIGE-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAEIGE-01A-03D A44685 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44685_1_lane_dupsFlagged.bam	SRR1424358	@dbgap@:reads/SRP012006/SRS641119/SRX610038/SRR1424358/SRR1424358.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAEIGE-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAEIGE-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAEIIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAEIIW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEIIW-01A-02D	DNA	EFO	SRS654027		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEIIW-01A-02D A44595 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44595	SRX645980	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAEIIW-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAEIIW-01A-02D A44595 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44595_1_lane_dupsFlagged.bam	SRR1506857	@dbgap@:reads/SRP012006/SRS654027/SRX645980/SRR1506857/SRR1506857.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAEIIW-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAEIIW-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAEIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAEIJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEIJB-01A-01D	DNA	EFO	SRS620922		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEIJB-01A-01D A33680 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	314	A33680	SRX553629	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAEIJB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAEIJB-01A-01D A33680 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33680_1_lane_dupsFlagged.bam	SRR1299736	@dbgap@:reads/SRP012006/SRS620922/SRX553629/SRR1299736/SRR1299736.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAEIJB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAEIJB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAEJJR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAEJJR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEJJR-01A-01D	DNA	EFO	SRS625080		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAEJJR-01A-01D A33754 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	287	A33754	SRX561186	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAEJJR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAEJJR-01A-01D A33754 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33754_1_lane_dupsFlagged.bam	SRR1315627	@dbgap@:reads/SRP012006/SRS625080/SRX561186/SRR1315627/SRR1315627.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAEJJR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAEJJR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAENVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAENVA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAENVA-01A-01D	DNA	EFO	SRS625143		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAENVA-01A-01D A33832 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	291	A33832	SRX561250	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAENVA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAENVA-01A-01D A33832 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33832_1_lane_dupsFlagged.bam	SRR1315702	@dbgap@:reads/SRP012006/SRS625143/SRX561250/SRR1315702/SRR1315702.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAENVA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAENVA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLIH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLIH-01A-03D	DNA	EFO	SRS641136		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLIH-01A-03D A44686 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44686	SRX610063	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLIH-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJLIH-01A-03D A44686 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44686_1_lane_dupsFlagged.bam	SRR1424381	@dbgap@:reads/SRP012006/SRS641136/SRX610063/SRR1424381/SRR1424381.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLIH-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLIH-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLIJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLIJ-01A-02D	DNA	EFO	SRS654065		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLIJ-01A-02D A44596 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44596	SRX646026	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLIJ-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJLIJ-01A-02D A44596 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44596_1_lane_dupsFlagged.bam	SRR1506787	@dbgap@:reads/SRP012006/SRS654065/SRX646026/SRR1506787/SRR1506787.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLIJ-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLIJ-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLIP-01A-02D	DNA	EFO	SRS654131		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLIP-01A-02D A41263 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41263	SRX646093	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJLIP-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJLIP-01A-02D A41263 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41263_1_lane_dupsFlagged.bam	SRR1506904	@dbgap@:reads/SRP012006/SRS654131/SRX646093/SRR1506904/SRR1506904.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLIP-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLIP-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLIT-01A-01D	DNA	EFO	SRS654146		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLIT-01A-01D A41264 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41264	SRX646109	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJLIT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJLIT-01A-01D A41264 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41264_1_lane_dupsFlagged.bam	SRR1506919	@dbgap@:reads/SRP012006/SRS654146/SRX646109/SRR1506919/SRR1506919.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLIT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLIT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLJG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLJG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLJG-01A-01D	DNA	EFO	SRS625300		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLJG-01A-01D A41190 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41190	SRX561670	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLJG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJLJG-01A-01D A41190 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41190_1_lane_dupsFlagged.bam	SRR1506761	@dbgap@:reads/SRP012006/SRS625300/SRX561670/SRR1506761/SRR1506761.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLJG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLJG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLJH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLJH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLJH-01A-02D	DNA	EFO	SRS654004		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLJH-01A-02D A44597 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44597	SRX645950	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLJH-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJLJH-01A-02D A44597 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44597_1_lane_dupsFlagged.bam	SRR1506823	@dbgap@:reads/SRP012006/SRS654004/SRX645950/SRR1506823/SRR1506823.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLJH-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLJH-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLJP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLJP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLJP-01A-01D	DNA	EFO	SRS620928		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLJP-01A-01D A33681 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	287	A33681	SRX553636	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLJP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLJP-01A-01D A33681 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33681_1_lane_dupsFlagged.bam	SRR1299732	@dbgap@:reads/SRP012006/SRS620928/SRX553636/SRR1299732/SRR1299732.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLJP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLJP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKC-01A-02D	DNA	EFO	SRS654124		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLKC-01A-02D A41265 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41265	SRX646087	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJLKC-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJLKC-01A-02D A41265 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41265_1_lane_dupsFlagged.bam	SRR1506939	@dbgap@:reads/SRP012006/SRS654124/SRX646087/SRR1506939/SRR1506939.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLKC-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLKC-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-02D	DNA	EFO	SRS653229		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLKR-01A-02D A41192 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41192	SRX645044	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLKR-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJLKR-01A-02D A41192 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41192_1_lane_dupsFlagged.bam	SRR1506757	@dbgap@:reads/SRP012006/SRS653229/SRX645044/SRR1506757/SRR1506757.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLKR-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLKR-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLKS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKS-01A-02D	DNA	EFO	SRS654006		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLKS-01A-02D A44598 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44598	SRX645952	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLKS-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJLKS-01A-02D A44598 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44598_1_lane_dupsFlagged.bam	SRR1506848	@dbgap@:reads/SRP012006/SRS654006/SRX645952/SRR1506848/SRR1506848.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLKS-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLKS-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLLD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLLD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLD-01A-01D	DNA	EFO	SRS654072		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLLD-01A-01D A41266 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41266	SRX646034	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJLLD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJLLD-01A-01D A41266 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41266_1_lane_dupsFlagged.bam	SRR1506932	@dbgap@:reads/SRP012006/SRS654072/SRX646034/SRR1506932/SRR1506932.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLLD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLLD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLF-01A-02D	DNA	EFO	SRS654113		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLLF-01A-02D A41267 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41267	SRX646076	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJLLF-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJLLF-01A-02D A41267 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41267_1_lane_dupsFlagged.bam	SRR1506866	@dbgap@:reads/SRP012006/SRS654113/SRX646076/SRR1506866/SRR1506866.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLLF-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLLF-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLI-01A-01D	DNA	EFO	SRS625289		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLLI-01A-01D A41196 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41196	SRX561659	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLLI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLLI-01A-01D A41196 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41196_1_lane_dupsFlagged.bam	SRR1506753	@dbgap@:reads/SRP012006/SRS625289/SRX561659/SRR1506753/SRR1506753.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLLI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLLI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLLN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLN-01A-01D	DNA	EFO	SRS620918		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLLN-01A-01D A33682 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	287	A33682	SRX553626	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLLN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLLN-01A-01D A33682 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33682_1_lane_dupsFlagged.bam	SRR1299741	@dbgap@:reads/SRP012006/SRS620918/SRX553626/SRR1299741/SRR1299741.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLLN-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLLN-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLLV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLV-01A-01D	DNA	EFO	SRS654158		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLLV-01A-01D A41268 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41268	SRX646121	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJLLV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJLLV-01A-01D A41268 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41268_1_lane_dupsFlagged.bam	SRR1506930	@dbgap@:reads/SRP012006/SRS654158/SRX646121/SRR1506930/SRR1506930.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLLV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLLV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLLY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLLY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLLY-01A-01D	DNA	EFO	SRS625251		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLLY-01A-01D A41197 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41197	SRX561621	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLLY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJLLY-01A-01D A41197 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41197_1_lane_dupsFlagged.bam	SRR1506756	@dbgap@:reads/SRP012006/SRS625251/SRX561621/SRR1506756/SRR1506756.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLLY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLLY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLMB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLMB-01A-01D	DNA	EFO	SRS653231		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLMB-01A-01D A41199 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41199	SRX645046	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLMB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJLMB-01A-01D A41199 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41199_1_lane_dupsFlagged.bam	SRR1506690	@dbgap@:reads/SRP012006/SRS653231/SRX645046/SRR1506690/SRR1506690.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLMB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLMB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLMH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLMH-01A-01D	DNA	EFO	SRS653242		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLMH-01A-01D A41200 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41200	SRX645057	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLMH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJLMH-01A-01D A41200 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41200_1_lane_dupsFlagged.bam	SRR1506699	@dbgap@:reads/SRP012006/SRS653242/SRX645057/SRR1506699/SRR1506699.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLMH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLMH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLMJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLMJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLMJ-01A-01D	DNA	EFO	SRS625252		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLMJ-01A-01D A41201 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41201	SRX561622	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLMJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLMJ-01A-01D A41201 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41201_1_lane_dupsFlagged.bam	SRR1506762	@dbgap@:reads/SRP012006/SRS625252/SRX561622/SRR1506762/SRR1506762.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLMJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLMJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLML-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLML-01A-01D	DNA	EFO	SRS625281		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLML-01A-01D A41202 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41202	SRX561651	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLML-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLML-01A-01D A41202 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41202_1_lane_dupsFlagged.bam	SRR1506694	@dbgap@:reads/SRP012006/SRS625281/SRX561651/SRR1506694/SRR1506694.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLML-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLML-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLMV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLMV-01A-01D	DNA	EFO	SRS654080		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLMV-01A-01D A41269 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41269	SRX646043	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJLMV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJLMV-01A-01D A41269 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41269_1_lane_dupsFlagged.bam	SRR1506942	@dbgap@:reads/SRP012006/SRS654080/SRX646043/SRR1506942/SRR1506942.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLMV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLMV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLMW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLMW-01A-03D	DNA	EFO	SRS641185		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLMW-01A-03D A44687 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44687	SRX610124	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLMW-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJLMW-01A-03D A44687 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44687_1_lane_dupsFlagged.bam	SRR1424406	@dbgap@:reads/SRP012006/SRS641185/SRX610124/SRR1424406/SRR1424406.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLMW-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLMW-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLNA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNA-01A-01D	DNA	EFO	SRS653233		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLNA-01A-01D A41206 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41206	SRX645048	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLNA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJLNA-01A-01D A41206 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41206_1_lane_dupsFlagged.bam	SRR1506712	@dbgap@:reads/SRP012006/SRS653233/SRX645048/SRR1506712/SRR1506712.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLNA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLNA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNC-01A-01D	DNA	EFO	SRS653241		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLNC-01A-01D A41207 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41207	SRX645056	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLNC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJLNC-01A-01D A41207 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41207_1_lane_dupsFlagged.bam	SRR1506718	@dbgap@:reads/SRP012006/SRS653241/SRX645056/SRR1506718/SRR1506718.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLNC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLNC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLND	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLND-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLND-01A-03D	DNA	EFO	SRS641174		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLND-01A-03D A44688 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44688	SRX610113	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLND-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJLND-01A-03D A44688 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44688_1_lane_dupsFlagged.bam	SRR1424373	@dbgap@:reads/SRP012006/SRS641174/SRX610113/SRR1424373/SRR1424373.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLND-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLND-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01D	DNA	EFO	SRS190127		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLNJ-01A-01D A41383 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41383	SRX608486	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLNJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-50-PAJLNJ-01A-01D A41383 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41383_1_lane_dupsFlagged.bam	SRR1422189	@dbgap@:reads/SRP012006/SRS190127/SRX608486/SRR1422189/SRR1422189.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLNJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLNJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLNX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNX-01A-01D	DNA	EFO	SRS654035		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLNX-01A-01D A44570 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A44570	SRX645989	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLNX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-50-PAJLNX-01A-01D A44570 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44570_1_lane_dupsFlagged.bam	SRR1506784	@dbgap@:reads/SRP012006/SRS654035/SRX645989/SRR1506784/SRR1506784.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLNX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLNX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLPD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLPD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPD-01A-01D	DNA	EFO	SRS625259		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLPD-01A-01D A41209 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41209	SRX561629	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLPD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLPD-01A-01D A41209 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41209_1_lane_dupsFlagged.bam	SRR1506738	@dbgap@:reads/SRP012006/SRS625259/SRX561629/SRR1506738/SRR1506738.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLPD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLPD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLPJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPJ-01A-02D	DNA	EFO	SRS654021		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLPJ-01A-02D A44599 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44599	SRX645972	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLPJ-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJLPJ-01A-02D A44599 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44599_1_lane_dupsFlagged.bam	SRR1506845	@dbgap@:reads/SRP012006/SRS654021/SRX645972/SRR1506845/SRR1506845.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLPJ-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLPJ-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLPU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPU-01A-01D	DNA	EFO	SRS625255		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLPU-01A-01D A41211 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41211	SRX561625	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLPU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLPU-01A-01D A41211 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41211_1_lane_dupsFlagged.bam	SRR1506706	@dbgap@:reads/SRP012006/SRS625255/SRX561625/SRR1506706/SRR1506706.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLPU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLPU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLPW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPW-01A-01D	DNA	EFO	SRS625293		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLPW-01A-01D A41212 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41212	SRX561663	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLPW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJLPW-01A-01D A41212 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41212_1_lane_dupsFlagged.bam	SRR1506723	@dbgap@:reads/SRP012006/SRS625293/SRX561663/SRR1506723/SRR1506723.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLPW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLPW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLPX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLPX-01A-02D	DNA	EFO	SRS654098		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLPX-01A-02D A41270 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41270	SRX646060	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJLPX-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJLPX-01A-02D A41270 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41270_1_lane_dupsFlagged.bam	SRR1506935	@dbgap@:reads/SRP012006/SRS654098/SRX646060/SRR1506935/SRR1506935.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLPX-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLPX-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLRC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLRC-01A-01D	DNA	EFO	SRS654103		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLRC-01A-01D A41271 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41271	SRX646065	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJLRC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJLRC-01A-01D A41271 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41271_1_lane_dupsFlagged.bam	SRR1506884	@dbgap@:reads/SRP012006/SRS654103/SRX646065/SRR1506884/SRR1506884.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLRC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLRC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLRF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLRF-01A-01D	DNA	EFO	SRS620917		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLRF-01A-01D A33683 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	297	A33683	SRX553625	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLRF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLRF-01A-01D A33683 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33683_1_lane_dupsFlagged.bam	SRR1299739	@dbgap@:reads/SRP012006/SRS620917/SRX553625/SRR1299739/SRR1299739.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLRF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLRF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLRH-01A-03D	DNA	EFO	SRS641144		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLRH-01A-03D A44689 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44689	SRX610074	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLRH-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJLRH-01A-03D A44689 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44689_1_lane_dupsFlagged.bam	SRR1424412	@dbgap@:reads/SRP012006/SRS641144/SRX610074/SRR1424412/SRR1424412.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLRH-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLRH-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLRL-01A-03D	DNA	EFO	SRS641166		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLRL-01A-03D A44690 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44690	SRX610101	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLRL-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJLRL-01A-03D A44690 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44690_1_lane_dupsFlagged.bam	SRR1424424	@dbgap@:reads/SRP012006/SRS641166/SRX610101/SRR1424424/SRR1424424.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLRL-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLRL-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLRP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLRP-01A-03D	DNA	EFO	SRS641126		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLRP-01A-03D A44691 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44691	SRX610048	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLRP-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJLRP-01A-03D A44691 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44691_1_lane_dupsFlagged.bam	SRR1424364	@dbgap@:reads/SRP012006/SRS641126/SRX610048/SRR1424364/SRR1424364.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLRP-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLRP-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLRV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLRV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLRV-01A-01D	DNA	EFO	SRS625162		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLRV-01A-01D A33770 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	301	A33770	SRX561268	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLRV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLRV-01A-01D A33770 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33770_1_lane_dupsFlagged.bam	SRR1315662	@dbgap@:reads/SRP012006/SRS625162/SRX561268/SRR1315662/SRR1315662.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLRV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLRV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLSF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLSF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSF-01A-01D	DNA	EFO	SRS654143		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLSF-01A-01D A41272 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41272	SRX646105	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJLSF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJLSF-01A-01D A41272 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41272_1_lane_dupsFlagged.bam	SRR1506928	@dbgap@:reads/SRP012006/SRS654143/SRX646105/SRR1506928/SRR1506928.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLSF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLSF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLSL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSL-01A-01D	DNA	EFO	SRS620926		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLSL-01A-01D A33684 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	297	A33684	SRX553634	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLSL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLSL-01A-01D A33684 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33684_1_lane_dupsFlagged.bam	SRR1299744	@dbgap@:reads/SRP012006/SRS620926/SRX553634/SRR1299744/SRR1299744.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLSL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLSL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLSM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSM-01A-01D	DNA	EFO	SRS654075		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLSM-01A-01D A41273 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41273	SRX646037	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJLSM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJLSM-01A-01D A41273 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41273_1_lane_dupsFlagged.bam	SRR1506900	@dbgap@:reads/SRP012006/SRS654075/SRX646037/SRR1506900/SRR1506900.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLSM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLSM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLSP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSP-01A-02D	DNA	EFO	SRS625161		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLSP-01A-02D A33771 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	281	A33771	SRX561265	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLSP-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLSP-01A-02D A33771 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33771_1_lane_dupsFlagged.bam	SRR1315677	@dbgap@:reads/SRP012006/SRS625161/SRX561265/SRR1315677/SRR1315677.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLSP-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLSP-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLSS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLSS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSS-01A-03D	DNA	EFO	SRS641120		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLSS-01A-03D A44692 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44692	SRX610039	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLSS-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJLSS-01A-03D A44692 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44692_1_lane_dupsFlagged.bam	SRR1424356	@dbgap@:reads/SRP012006/SRS641120/SRX610039/SRR1424356/SRR1424356.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLSS-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLSS-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLST-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLST-01A-01D	DNA	EFO	SRS620927		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLST-01A-01D A33685 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A33685	SRX553633	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLST-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLST-01A-01D A33685 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33685_1_lane_dupsFlagged.bam	SRR1299734	@dbgap@:reads/SRP012006/SRS620927/SRX553633/SRR1299734/SRR1299734.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLST-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLST-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLSV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSV-01A-01D	DNA	EFO	SRS654144		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLSV-01A-01D A41274 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41274	SRX646106	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJLSV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJLSV-01A-01D A41274 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41274_1_lane_dupsFlagged.bam	SRR1506886	@dbgap@:reads/SRP012006/SRS654144/SRX646106/SRR1506886/SRR1506886.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLSV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLSV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLSW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSW-01A-02D	DNA	EFO	SRS654029		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLSW-01A-02D A44600 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44600	SRX645982	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLSW-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJLSW-01A-02D A44600 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44600_1_lane_dupsFlagged.bam	SRR1506858	@dbgap@:reads/SRP012006/SRS654029/SRX645982/SRR1506858/SRR1506858.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLSW-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLSW-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLSY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSY-01A-01D	DNA	EFO	SRS625138		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLSY-01A-01D A33774 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	292	A33774	SRX561244	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLSY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLSY-01A-01D A33774 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33774_1_lane_dupsFlagged.bam	SRR1315645	@dbgap@:reads/SRP012006/SRS625138/SRX561244/SRR1315645/SRR1315645.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLSY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLSY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLSZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLSZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLSZ-01A-03D	DNA	EFO	SRS641187		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLSZ-01A-03D A44693 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44693	SRX610126	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLSZ-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJLSZ-01A-03D A44693 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44693_1_lane_dupsFlagged.bam	SRR1424332	@dbgap@:reads/SRP012006/SRS641187/SRX610126/SRR1424332/SRR1424332.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLSZ-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLSZ-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLTD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLTD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTD-01A-02D	DNA	EFO	SRS625174		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLTD-01A-02D A33776 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	291	A33776	SRX561281	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLTD-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLTD-01A-02D A33776 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33776_1_lane_dupsFlagged.bam	SRR1315653	@dbgap@:reads/SRP012006/SRS625174/SRX561281/SRR1315653/SRR1315653.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLTD-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLTD-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLTE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLTE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTE-01A-01D	DNA	EFO	SRS620919		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLTE-01A-01D A33686 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A33686	SRX553627	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLTE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLTE-01A-01D A33686 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33686_1_lane_dupsFlagged.bam	SRR1299735	@dbgap@:reads/SRP012006/SRS620919/SRX553627/SRR1299735/SRR1299735.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLTE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLTE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLTH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTH-01A-01D	DNA	EFO	SRS301266		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLTH-01A-01D A44744 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44744	SRX610098	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLTH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJLTH-01A-01D A44744 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44744_1_lane_dupsFlagged.bam	SRR1424422	@dbgap@:reads/SRP012006/SRS301266/SRX610098/SRR1424422/SRR1424422.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLTH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLTH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLTI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTI-01A-02D	DNA	EFO	SRS625123		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLTI-01A-02D A33778 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	301	A33778	SRX561229	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLTI-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLTI-01A-02D A33778 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33778_1_lane_dupsFlagged.bam	SRR1315713	@dbgap@:reads/SRP012006/SRS625123/SRX561229/SRR1315713/SRR1315713.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLTI-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLTI-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLTJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTJ-01A-01D	DNA	EFO	SRS625108		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLTJ-01A-01D A33779 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	281	A33779	SRX561214	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLTJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLTJ-01A-01D A33779 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33779_1_lane_dupsFlagged.bam	SRR1315698	@dbgap@:reads/SRP012006/SRS625108/SRX561214/SRR1315698/SRR1315698.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLTJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLTJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLTL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTL-01A-01D	DNA	EFO	SRS625173		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLTL-01A-01D A33780 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	281	A33780	SRX561280	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLTL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLTL-01A-01D A33780 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33780_1_lane_dupsFlagged.bam	SRR1315643	@dbgap@:reads/SRP012006/SRS625173/SRX561280/SRR1315643/SRR1315643.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLTL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLTL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLTU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLTU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLTU-01A-01D	DNA	EFO	SRS625168		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLTU-01A-01D A33781 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	292	A33781	SRX561275	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLTU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLTU-01A-01D A33781 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33781_1_lane_dupsFlagged.bam	SRR1315666	@dbgap@:reads/SRP012006/SRS625168/SRX561275/SRR1315666/SRR1315666.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLTU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLTU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUB-01A-01D	DNA	EFO	SRS625102		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLUB-01A-01D A33783 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	291	A33783	SRX561208	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLUB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLUB-01A-01D A33783 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33783_1_lane_dupsFlagged.bam	SRR1315703	@dbgap@:reads/SRP012006/SRS625102/SRX561208/SRR1315703/SRR1315703.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLUB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLUB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLUI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUI-01A-03D	DNA	EFO	SRS641138		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLUI-01A-03D A44694 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44694	SRX610065	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLUI-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJLUI-01A-03D A44694 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44694_1_lane_dupsFlagged.bam	SRR1424345	@dbgap@:reads/SRP012006/SRS641138/SRX610065/SRR1424345/SRR1424345.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLUI-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLUI-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Metastatic Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLUJ-06A	organism part	EFO	Metastatic Tumor	NCIt	"Metastatic"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUJ-06A-02D	DNA	EFO	SRS625135		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLUJ-06A-02D A33784 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	291	A33784	SRX561241	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLUJ-06A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLUJ-06A-02D A33784 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33784_1_lane_dupsFlagged.bam	SRR1315691	@dbgap@:reads/SRP012006/SRS625135/SRX561241/SRR1315691/SRR1315691.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLUJ-06A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLUJ-06A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLUM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUM-01A-01D	DNA	EFO	SRS625159		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLUM-01A-01D A33785 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	301	A33785	SRX561266	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLUM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLUM-01A-01D A33785 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33785_1_lane_dupsFlagged.bam	SRR1315668	@dbgap@:reads/SRP012006/SRS625159/SRX561266/SRR1315668/SRR1315668.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLUM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLUM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLUW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLUW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLUW-01A-01D	DNA	EFO	SRS625032		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLUW-01A-01D A33755 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	297	A33755	SRX561138	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLUW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLUW-01A-01D A33755 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33755_1_lane_dupsFlagged.bam	SRR1315614	@dbgap@:reads/SRP012006/SRS625032/SRX561138/SRR1315614/SRR1315614.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLUW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLUW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLVB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLVB-01A-01D	DNA	EFO	SRS625117		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLVB-01A-01D A33786 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	301	A33786	SRX561223	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLVB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLVB-01A-01D A33786 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33786_1_lane_dupsFlagged.bam	SRR1315650	@dbgap@:reads/SRP012006/SRS625117/SRX561223/SRR1315650/SRR1315650.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLVB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLVB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLVI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLVI-01A-03D	DNA	EFO	SRS641181		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLVI-01A-03D A44695 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44695	SRX610120	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLVI-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJLVI-01A-03D A44695 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44695_1_lane_dupsFlagged.bam	SRR1424365	@dbgap@:reads/SRP012006/SRS641181/SRX610120/SRR1424365/SRR1424365.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLVI-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLVI-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLVL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLVL-01A-03D	DNA	EFO	SRS641134		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLVL-01A-03D A44696 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44696	SRX610060	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLVL-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJLVL-01A-03D A44696 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44696_1_lane_dupsFlagged.bam	SRR1424389	@dbgap@:reads/SRP012006/SRS641134/SRX610060/SRR1424389/SRR1424389.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLVL-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLVL-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLVS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLVS-01A-01D	DNA	EFO	SRS654074		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLVS-01A-01D A41275 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41275	SRX646036	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLVS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJLVS-01A-01D A41275 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41275_1_lane_dupsFlagged.bam	SRR1506949	@dbgap@:reads/SRP012006/SRS654074/SRX646036/SRR1506949/SRR1506949.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLVS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLVS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLVV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLVV-01A-01D	DNA	EFO	SRS625158		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLVV-01A-01D A33789 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	292	A33789	SRX561264	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLVV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLVV-01A-01D A33789 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33789_1_lane_dupsFlagged.bam	SRR1315709	@dbgap@:reads/SRP012006/SRS625158/SRX561264/SRR1315709/SRR1315709.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLVV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLVV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLVX-01A-01D	DNA	EFO	SRS625113		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLVX-01A-01D A33790 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	292	A33790	SRX561218	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLVX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLVX-01A-01D A33790 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33790_1_lane_dupsFlagged.bam	SRR1315714	@dbgap@:reads/SRP012006/SRS625113/SRX561218/SRR1315714/SRR1315714.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLVX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLVX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLWA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLWA-01A-01D	DNA	EFO	SRS654086		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLWA-01A-01D A41276 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41276	SRX646048	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJLWA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJLWA-01A-01D A41276 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41276_1_lane_dupsFlagged.bam	SRR1506888	@dbgap@:reads/SRP012006/SRS654086/SRX646048/SRR1506888/SRR1506888.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLWA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLWA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLWC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLWC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLWC-01A-02D	DNA	EFO	SRS654017		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLWC-01A-02D A44601 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A44601	SRX645967	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLWC-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-50-PAJLWC-01A-02D A44601 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44601_1_lane_dupsFlagged.bam	SRR1506818	@dbgap@:reads/SRP012006/SRS654017/SRX645967/SRR1506818/SRR1506818.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLWC-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLWC-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLWG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLWG-01A-01D	DNA	EFO	SRS625098		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLWG-01A-01D A33791 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	291	A33791	SRX561204	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLWG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLWG-01A-01D A33791 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33791_1_lane_dupsFlagged.bam	SRR1315686	@dbgap@:reads/SRP012006/SRS625098/SRX561204/SRR1315686/SRR1315686.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLWG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLWG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLWI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLWI-01A-01D	DNA	EFO	SRS625181		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLWI-01A-01D A33792 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	291	A33792	SRX561288	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLWI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLWI-01A-01D A33792 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33792_1_lane_dupsFlagged.bam	SRR1315708	@dbgap@:reads/SRP012006/SRS625181/SRX561288/SRR1315708/SRR1315708.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLWI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLWI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLWR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLWR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLWR-01A-01D	DNA	EFO	SRS620925		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLWR-01A-01D A33687 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	314	A33687	SRX553635	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLWR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLWR-01A-01D A33687 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33687_1_lane_dupsFlagged.bam	SRR1299742	@dbgap@:reads/SRP012006/SRS620925/SRX553635/SRR1299742/SRR1299742.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLWR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLWR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLWT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLWT-01A-02D	DNA	EFO	SRS625066		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLWT-01A-02D A33756 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	297	A33756	SRX561174	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLWT-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLWT-01A-02D A33756 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33756_1_lane_dupsFlagged.bam	SRR1315576	@dbgap@:reads/SRP012006/SRS625066/SRX561174/SRR1315576/SRR1315576.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLWT-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLWT-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLWW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLWW-01A-01D	DNA	EFO	SRS625165		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLWW-01A-01D A33795 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	281	A33795	SRX561271	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLWW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLWW-01A-01D A33795 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33795_1_lane_dupsFlagged.bam	SRR1315697	@dbgap@:reads/SRP012006/SRS625165/SRX561271/SRR1315697/SRR1315697.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLWW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLWW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLWX-01A-01D	DNA	EFO	SRS654152		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLWX-01A-01D A41277 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41277	SRX646114	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJLWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJLWX-01A-01D A41277 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41277_1_lane_dupsFlagged.bam	SRR1506943	@dbgap@:reads/SRP012006/SRS654152/SRX646114/SRR1506943/SRR1506943.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLWX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLWX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLWZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLWZ-01A-01D	DNA	EFO	SRS625182		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLWZ-01A-01D A33796 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	281	A33796	SRX561287	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLWZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLWZ-01A-01D A33796 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33796_1_lane_dupsFlagged.bam	SRR1315642	@dbgap@:reads/SRP012006/SRS625182/SRX561287/SRR1315642/SRR1315642.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLWZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLWZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLXD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLXD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLXD-01A-01D	DNA	EFO	SRS654153		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLXD-01A-01D A41278 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41278	SRX646115	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJLXD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJLXD-01A-01D A41278 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41278_1_lane_dupsFlagged.bam	SRR1506879	@dbgap@:reads/SRP012006/SRS654153/SRX646115/SRR1506879/SRR1506879.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLXD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLXD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLXE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLXE-01A-01D	DNA	EFO	SRS625120		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLXE-01A-01D A33797 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	292	A33797	SRX561226	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLXE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLXE-01A-01D A33797 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33797_1_lane_dupsFlagged.bam	SRR1315717	@dbgap@:reads/SRP012006/SRS625120/SRX561226/SRR1315717/SRR1315717.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLXE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLXE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLXH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLXH-01A-03D	DNA	EFO	SRS654095		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLXH-01A-03D A41279 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41279	SRX646057	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJLXH-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJLXH-01A-03D A41279 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41279_1_lane_dupsFlagged.bam	SRR1506918	@dbgap@:reads/SRP012006/SRS654095/SRX646057/SRR1506918/SRR1506918.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLXH-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLXH-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLXI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLXI-01A-02D	DNA	EFO	SRS654040		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLXI-01A-02D A44602 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A44602	SRX645993	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLXI-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-50-PAJLXI-01A-02D A44602 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44602_1_lane_dupsFlagged.bam	SRR1506808	@dbgap@:reads/SRP012006/SRS654040/SRX645993/SRR1506808/SRR1506808.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLXI-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLXI-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLXM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLXM-01A-02D	DNA	EFO	SRS625096		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLXM-01A-02D A33757 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A33757	SRX561202	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLXM-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLXM-01A-02D A33757 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33757_1_lane_dupsFlagged.bam	SRR1315560	@dbgap@:reads/SRP012006/SRS625096/SRX561202/SRR1315560/SRR1315560.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLXM-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLXM-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLYD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLYD-01A-03D	DNA	EFO	SRS654012		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLYD-01A-03D A44603 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44603	SRX645960	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLYD-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJLYD-01A-03D A44603 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44603_1_lane_dupsFlagged.bam	SRR1506827	@dbgap@:reads/SRP012006/SRS654012/SRX645960/SRR1506827/SRR1506827.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLYD-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLYD-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLYF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLYF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLYF-01A-01D	DNA	EFO	SRS625163		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLYF-01A-01D A33799 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	291	A33799	SRX561270	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLYF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLYF-01A-01D A33799 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33799_1_lane_dupsFlagged.bam	SRR1315654	@dbgap@:reads/SRP012006/SRS625163/SRX561270/SRR1315654/SRR1315654.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLYF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLYF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLYG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLYG-01A-02D	DNA	EFO	SRS625126		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLYG-01A-02D A33800 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	291	A33800	SRX561232	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLYG-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLYG-01A-02D A33800 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33800_1_lane_dupsFlagged.bam	SRR1315689	@dbgap@:reads/SRP012006/SRS625126/SRX561232/SRR1315689/SRR1315689.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLYG-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLYG-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLYP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLYP-01A-01D	DNA	EFO	SRS620920		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLYP-01A-01D A33688 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	314	A33688	SRX553628	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLYP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLYP-01A-01D A33688 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33688_1_lane_dupsFlagged.bam	SRR1299733	@dbgap@:reads/SRP012006/SRS620920/SRX553628/SRR1299733/SRR1299733.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLYP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLYP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLZA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLZA-01A-01D	DNA	EFO	SRS625177		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLZA-01A-01D A33804 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	281	A33804	SRX561284	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLZA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLZA-01A-01D A33804 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33804_1_lane_dupsFlagged.bam	SRR1315679	@dbgap@:reads/SRP012006/SRS625177/SRX561284/SRR1315679/SRR1315679.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLZA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLZA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLZC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLZC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLZC-01A-02D	DNA	EFO	SRS625157		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLZC-01A-02D A33805 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	292	A33805	SRX561262	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLZC-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLZC-01A-02D A33805 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33805_1_lane_dupsFlagged.bam	SRR1315670	@dbgap@:reads/SRP012006/SRS625157/SRX561262/SRR1315670/SRR1315670.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLZC-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLZC-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLZN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLZN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLZN-01A-03D	DNA	EFO	SRS625171		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLZN-01A-03D A33806 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	292	A33806	SRX561278	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLZN-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLZN-01A-03D A33806 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33806_1_lane_dupsFlagged.bam	SRR1315655	@dbgap@:reads/SRP012006/SRS625171/SRX561278/SRR1315655/SRR1315655.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLZN-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLZN-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJLZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJLZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLZT-01A-01D	DNA	EFO	SRS625184		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJLZT-01A-01D A33807 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	291	A33807	SRX561290	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJLZT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJLZT-01A-01D A33807 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33807_1_lane_dupsFlagged.bam	SRR1315663	@dbgap@:reads/SRP012006/SRS625184/SRX561290/SRR1315663/SRR1315663.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJLZT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJLZT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMAX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMAX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMAX-01A-03D	DNA	EFO	SRS654018		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMAX-01A-03D A44604 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44604	SRX645968	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMAX-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJMAX-01A-03D A44604 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44604_1_lane_dupsFlagged.bam	SRR1506771	@dbgap@:reads/SRP012006/SRS654018/SRX645968/SRR1506771/SRR1506771.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMAX-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMAX-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMBG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMBG-01A-01D	DNA	EFO	SRS654011		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMBG-01A-01D A44556 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44556	SRX645958	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMBG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJMBG-01A-01D A44556 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44556_1_lane_dupsFlagged.bam	SRR1506851	@dbgap@:reads/SRP012006/SRS654011/SRX645958/SRR1506851/SRR1506851.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMBG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMBG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMBN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMBN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMBN-01A-01D	DNA	EFO	SRS625104		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMBN-01A-01D A33809 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	301	A33809	SRX561210	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMBN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMBN-01A-01D A33809 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33809_1_lane_dupsFlagged.bam	SRR1315629	@dbgap@:reads/SRP012006/SRS625104/SRX561210/SRR1315629/SRR1315629.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMBN-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMBN-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMBP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMBP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMBP-01A-01D	DNA	EFO	SRS625068		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMBP-01A-01D A33758 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A33758	SRX561173	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMBP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMBP-01A-01D A33758 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33758_1_lane_dupsFlagged.bam	SRR1315565	@dbgap@:reads/SRP012006/SRS625068/SRX561173/SRR1315565/SRR1315565.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMBP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMBP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMBR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMBR-01A-01D	DNA	EFO	SRS620923		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMBR-01A-01D A33689 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	287	A33689	SRX553630	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMBR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMBR-01A-01D A33689 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33689_1_lane_dupsFlagged.bam	SRR1299738	@dbgap@:reads/SRP012006/SRS620923/SRX553630/SRR1299738/SRR1299738.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMBR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMBR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMBZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMBZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMBZ-01A-01D	DNA	EFO	SRS654132		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMBZ-01A-01D A41280 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41280	SRX646094	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJMBZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMBZ-01A-01D A41280 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41280_1_lane_dupsFlagged.bam	SRR1506893	@dbgap@:reads/SRP012006/SRS654132/SRX646094/SRR1506893/SRR1506893.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMBZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMBZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMCB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMCB-01A-01D	DNA	EFO	SRS625060		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMCB-01A-01D A33759 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	314	A33759	SRX561166	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMCB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMCB-01A-01D A33759 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33759_1_lane_dupsFlagged.bam	SRR1315626	@dbgap@:reads/SRP012006/SRS625060/SRX561166/SRR1315626/SRR1315626.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMCB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMCB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMCH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMCH-01A-01D	DNA	EFO	SRS625046		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMCH-01A-01D A33760 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	287	A33760	SRX561152	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMCH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMCH-01A-01D A33760 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33760_1_lane_dupsFlagged.bam	SRR1315602	@dbgap@:reads/SRP012006/SRS625046/SRX561152/SRR1315602/SRR1315602.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMCH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMCH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMDF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMDF-01A-01D	DNA	EFO	SRS625083		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMDF-01A-01D A33761 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	287	A33761	SRX561189	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMDF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMDF-01A-01D A33761 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33761_1_lane_dupsFlagged.bam	SRR1315595	@dbgap@:reads/SRP012006/SRS625083/SRX561189/SRR1315595/SRR1315595.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMDF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMDF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMDL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMDL-01A-01D	DNA	EFO	SRS301270		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMDL-01A-01D A44558 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44558	SRX646022	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMDL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJMDL-01A-01D A44558 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44558_1_lane_dupsFlagged.bam	SRR1506839	@dbgap@:reads/SRP012006/SRS301270/SRX646022/SRR1506839/SRR1506839.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMDL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMDL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMDP-01A-01D	DNA	EFO	SRS654105		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMDP-01A-01D A41281 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41281	SRX646067	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJMDP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMDP-01A-01D A41281 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41281_1_lane_dupsFlagged.bam	SRR1506937	@dbgap@:reads/SRP012006/SRS654105/SRX646067/SRR1506937/SRR1506937.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMDP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMDP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMDU-01A-01D	DNA	EFO	SRS654082		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMDU-01A-01D A41282 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41282	SRX646044	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJMDU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMDU-01A-01D A41282 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41282_1_lane_dupsFlagged.bam	SRR1506901	@dbgap@:reads/SRP012006/SRS654082/SRX646044/SRR1506901/SRR1506901.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMDU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMDU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMED-01A-01D	DNA	EFO	SRS654068		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMED-01A-01D A44571 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44571	SRX646029	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMED-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJMED-01A-01D A44571 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44571_1_lane_dupsFlagged.bam	SRR1506797	@dbgap@:reads/SRP012006/SRS654068/SRX646029/SRR1506797/SRR1506797.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMED-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMED-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMEG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEG-01A-01D	DNA	EFO	SRS654039		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMEG-01A-01D A44572 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44572	SRX645991	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMEG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJMEG-01A-01D A44572 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44572_1_lane_dupsFlagged.bam	SRR1506850	@dbgap@:reads/SRP012006/SRS654039/SRX645991/SRR1506850/SRR1506850.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMEG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMEG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMEJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEJ-01A-01D	DNA	EFO	SRS625153		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMEJ-01A-01D A33810 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	301	A33810	SRX561259	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMEJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMEJ-01A-01D A33810 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33810_1_lane_dupsFlagged.bam	SRR1315720	@dbgap@:reads/SRP012006/SRS625153/SRX561259/SRR1315720/SRR1315720.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMEJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMEJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEL-01A-01D	DNA	EFO	SRS190137		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMEL-01A-01D A41385 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41385	SRX608469	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMEL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-50-PAJMEL-01A-01D A41385 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41385_1_lane_dupsFlagged.bam	SRR1422236	@dbgap@:reads/SRP012006/SRS190137/SRX608469/SRR1422236/SRR1422236.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMEL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMEL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEN-01A-01D	DNA	EFO	SRS118131		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMEN-01A-01D A44732 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44732	SRX610146	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMEN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJMEN-01A-01D A44732 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44732_1_lane_dupsFlagged.bam	SRR1424324	@dbgap@:reads/SRP012006/SRS118131/SRX610146/SRR1424324/SRR1424324.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMEN-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMEN-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01D	DNA	EFO	SRS190139		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMEP-01A-01D A44730 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44730	SRX610145	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMEP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJMEP-01A-01D A44730 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44730_1_lane_dupsFlagged.bam	SRR1424320	@dbgap@:reads/SRP012006/SRS190139/SRX610145/SRR1424320/SRR1424320.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMEP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMEP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMFP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFP-01A-01D	DNA	EFO	SRS654026		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMFP-01A-01D A44583 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44583	SRX645979	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMFP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJMFP-01A-01D A44583 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44583_1_lane_dupsFlagged.bam	SRR1506785	@dbgap@:reads/SRP012006/SRS654026/SRX645979/SRR1506785/SRR1506785.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMFP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMFP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFU-01A-02D	DNA	EFO	SRS654138		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMFU-01A-02D A41283 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41283	SRX646100	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJMFU-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMFU-01A-02D A41283 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41283_1_lane_dupsFlagged.bam	SRR1506913	@dbgap@:reads/SRP012006/SRS654138/SRX646100/SRR1506913/SRR1506913.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMFU-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMFU-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMFY-01A-01D	DNA	EFO	SRS301272		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMFY-01A-01D A41386 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41386	SRX608432	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMFY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-50-PAJMFY-01A-01D A41386 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41386_1_lane_dupsFlagged.bam	SRR1422186	@dbgap@:reads/SRP012006/SRS301272/SRX608432/SRR1422186/SRR1422186.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMFY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMFY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMGI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMGI-01A-01D	DNA	EFO	SRS620924		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMGI-01A-01D A33690 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	287	A33690	SRX553632	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMGI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMGI-01A-01D A33690 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33690_1_lane_dupsFlagged.bam	SRR1299740	@dbgap@:reads/SRP012006/SRS620924/SRX553632/SRR1299740/SRR1299740.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMGI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMGI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMHV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMHV-01A-01D	DNA	EFO	SRS625084		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMHV-01A-01D A33762 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	297	A33762	SRX561190	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMHV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMHV-01A-01D A33762 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33762_1_lane_dupsFlagged.bam	SRR1315579	@dbgap@:reads/SRP012006/SRS625084/SRX561190/SRR1315579/SRR1315579.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMHV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMHV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMIB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMIB-01A-02D	DNA	EFO	SRS653999		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMIB-01A-02D A44605 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44605	SRX645945	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMIB-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJMIB-01A-02D A44605 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44605_1_lane_dupsFlagged.bam	SRR1506835	@dbgap@:reads/SRP012006/SRS653999/SRX645945/SRR1506835/SRR1506835.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMIB-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMIB-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMIE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMIE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMIE-01A-01D	DNA	EFO	SRS625051		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMIE-01A-01D A33763 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	297	A33763	SRX561157	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMIE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMIE-01A-01D A33763 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33763_1_lane_dupsFlagged.bam	SRR1315577	@dbgap@:reads/SRP012006/SRS625051/SRX561157/SRR1315577/SRR1315577.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMIE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMIE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMIP-01A-01D	DNA	EFO	SRS625031		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMIP-01A-01D A33764 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	297	A33764	SRX561137	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMIP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMIP-01A-01D A33764 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33764_1_lane_dupsFlagged.bam	SRR1315611	@dbgap@:reads/SRP012006/SRS625031/SRX561137/SRR1315611/SRR1315611.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMIP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMIP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMIY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMIY-01A-02D	DNA	EFO	SRS653996		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMIY-01A-02D A44606 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44606	SRX645942	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMIY-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJMIY-01A-02D A44606 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44606_1_lane_dupsFlagged.bam	SRR1506816	@dbgap@:reads/SRP012006/SRS653996/SRX645942/SRR1506816/SRR1506816.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMIY-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMIY-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMIZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMIZ-01A-02D	DNA	EFO	SRS625057		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMIZ-01A-02D A33765 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A33765	SRX561163	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMIZ-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMIZ-01A-02D A33765 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33765_1_lane_dupsFlagged.bam	SRR1315620	@dbgap@:reads/SRP012006/SRS625057/SRX561163/SRR1315620/SRR1315620.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMIZ-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMIZ-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJB-01A-01D	DNA	EFO	SRS654076		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMJB-01A-01D A41284 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41284	SRX646038	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJMJB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMJB-01A-01D A41284 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41284_1_lane_dupsFlagged.bam	SRR1506862	@dbgap@:reads/SRP012006/SRS654076/SRX646038/SRR1506862/SRR1506862.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMJB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMJB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJK-01A-01D	DNA	EFO	SRS375429		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMJK-01A-01D A41387 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41387	SRX608451	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMJK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAJMJK-01A-01D A41387 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41387_1_lane_dupsFlagged.bam	SRR1422225	@dbgap@:reads/SRP012006/SRS375429/SRX608451/SRR1422225/SRR1422225.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMJK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMJK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMJL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJL-01A-01D	DNA	EFO	SRS625050		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMJL-01A-01D A33766 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	314	A33766	SRX561156	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMJL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMJL-01A-01D A33766 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33766_1_lane_dupsFlagged.bam	SRR1315605	@dbgap@:reads/SRP012006/SRS625050/SRX561156/SRR1315605/SRR1315605.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMJL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMJL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMJM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJM-01A-02D	DNA	EFO	SRS654007		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMJM-01A-02D A44607 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44607	SRX645953	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMJM-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJMJM-01A-02D A44607 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44607_1_lane_dupsFlagged.bam	SRR1506826	@dbgap@:reads/SRP012006/SRS654007/SRX645953/SRR1506826/SRR1506826.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMJM-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMJM-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMJR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMJR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJR-01A-01D	DNA	EFO	SRS625061		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMJR-01A-01D A33767 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	314	A33767	SRX561167	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMJR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMJR-01A-01D A33767 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33767_1_lane_dupsFlagged.bam	SRR1315582	@dbgap@:reads/SRP012006/SRS625061/SRX561167/SRR1315582/SRR1315582.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMJR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMJR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJT-01A-02D	DNA	EFO	SRS625079		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMJT-01A-02D A33768 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	287	A33768	SRX561185	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMJT-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMJT-01A-02D A33768 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33768_1_lane_dupsFlagged.bam	SRR1315562	@dbgap@:reads/SRP012006/SRS625079/SRX561185/SRR1315562/SRR1315562.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMJT-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMJT-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMKD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKD-01A-01D	DNA	EFO	SRS654079		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKD-01A-01D A41285 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41285	SRX646041	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJMKD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMKD-01A-01D A41285 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41285_1_lane_dupsFlagged.bam	SRR1506910	@dbgap@:reads/SRP012006/SRS654079/SRX646041/SRR1506910/SRR1506910.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMKD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMKD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMKI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKI-01A-02D	DNA	EFO	SRS654093		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKI-01A-02D A41286 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41286	SRX646054	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJMKI-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMKI-01A-02D A41286 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41286_1_lane_dupsFlagged.bam	SRR1506948	@dbgap@:reads/SRP012006/SRS654093/SRX646054/SRR1506948/SRR1506948.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMKI-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMKI-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKJ-01A-02D	DNA	EFO	SRS625166		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKJ-01A-02D A33811 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	281	A33811	SRX561272	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMKJ-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMKJ-01A-02D A33811 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33811_1_lane_dupsFlagged.bam	SRR1315693	@dbgap@:reads/SRP012006/SRS625166/SRX561272/SRR1315693/SRR1315693.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMKJ-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMKJ-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMKK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKK-01A-01D	DNA	EFO	SRS625072		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKK-01A-01D A33691 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	297	A33691	SRX561178	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMKK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMKK-01A-01D A33691 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33691_1_lane_dupsFlagged.bam	SRR1315622	@dbgap@:reads/SRP012006/SRS625072/SRX561178/SRR1315622/SRR1315622.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMKK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMKK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKN-01A-01D	DNA	EFO	SRS160350		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKN-01A-01D A41388 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41388	SRX608459	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMKN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAJMKN-01A-01D A41388 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41388_1_lane_dupsFlagged.bam	SRR1422171	@dbgap@:reads/SRP012006/SRS160350/SRX608459/SRR1422171/SRR1422171.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMKN-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMKN-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMKP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKP-01A-01D	DNA	EFO	SRS625049		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKP-01A-01D A33692 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	297	A33692	SRX561155	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMKP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMKP-01A-01D A33692 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33692_1_lane_dupsFlagged.bam	SRR1315583	@dbgap@:reads/SRP012006/SRS625049/SRX561155/SRR1315583/SRR1315583.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMKP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMKP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMKT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMKT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKT-01A-02D	DNA	EFO	SRS654058		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKT-01A-02D A44608 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44608	SRX646017	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMKT-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJMKT-01A-02D A44608 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44608_1_lane_dupsFlagged.bam	SRR1506831	@dbgap@:reads/SRP012006/SRS654058/SRX646017/SRR1506831/SRR1506831.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMKT-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMKT-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMKW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKW-01A-01D	DNA	EFO	SRS654130		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMKW-01A-01D A41288 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41288	SRX646092	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJMKW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMKW-01A-01D A41288 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41288_1_lane_dupsFlagged.bam	SRR1506925	@dbgap@:reads/SRP012006/SRS654130/SRX646092/SRR1506925/SRR1506925.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMKW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMKW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLI-01A-02D	DNA	EFO	SRS654084		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMLI-01A-02D A41289 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41289	SRX646046	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJMLI-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMLI-01A-02D A41289 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41289_1_lane_dupsFlagged.bam	SRR1506924	@dbgap@:reads/SRP012006/SRS654084/SRX646046/SRR1506924/SRR1506924.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMLI-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMLI-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMLS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLS-01A-01D	DNA	EFO	SRS654101		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMLS-01A-01D A41290 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41290	SRX646064	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJMLS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMLS-01A-01D A41290 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41290_1_lane_dupsFlagged.bam	SRR1506927	@dbgap@:reads/SRP012006/SRS654101/SRX646064/SRR1506927/SRR1506927.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMLS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMLS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMLW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLW-01A-01D	DNA	EFO	SRS625176		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMLW-01A-01D A33812 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	281	A33812	SRX561283	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMLW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMLW-01A-01D A33812 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33812_1_lane_dupsFlagged.bam	SRR1315644	@dbgap@:reads/SRP012006/SRS625176/SRX561283/SRR1315644/SRR1315644.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMLW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMLW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMLY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMLY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLY-01A-02D	DNA	EFO	SRS654047		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMLY-01A-02D A44559 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44559	SRX646004	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMLY-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJMLY-01A-02D A44559 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44559_1_lane_dupsFlagged.bam	SRR1506812	@dbgap@:reads/SRP012006/SRS654047/SRX646004/SRR1506812/SRR1506812.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMLY-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMLY-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLZ-01A-02D	DNA	EFO	SRS654096		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMLZ-01A-02D A41291 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41291	SRX646058	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJMLZ-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMLZ-01A-02D A41291 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41291_1_lane_dupsFlagged.bam	SRR1506877	@dbgap@:reads/SRP012006/SRS654096/SRX646058/SRR1506877/SRR1506877.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMLZ-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMLZ-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMMC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMC-01A-02D	DNA	EFO	SRS654050		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMMC-01A-02D A44609 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A44609	SRX646008	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMMC-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-50-PAJMMC-01A-02D A44609 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44609_1_lane_dupsFlagged.bam	SRR1506798	@dbgap@:reads/SRP012006/SRS654050/SRX646008/SRR1506798/SRR1506798.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMMC-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMMC-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMME-01A-01D	DNA	EFO	SRS625279		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMME-01A-01D A41122 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41122	SRX561649	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMME-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMME-01A-01D A41122 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41122_1_lane_dupsFlagged.bam	SRR1506759	@dbgap@:reads/SRP012006/SRS625279/SRX561649/SRR1506759/SRR1506759.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMME-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMME-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMMK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMK-01A-03D	DNA	EFO	SRS641160		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMMK-01A-03D A44697 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44697	SRX610093	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMMK-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJMMK-01A-03D A44697 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44697_1_lane_dupsFlagged.bam	SRR1424408	@dbgap@:reads/SRP012006/SRS641160/SRX610093/SRR1424408/SRR1424408.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMMK-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMMK-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMMN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMMN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMN-01A-01D	DNA	EFO	SRS625249		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMMN-01A-01D A41123 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41123	SRX561619	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMMN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMMN-01A-01D A41123 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41123_1_lane_dupsFlagged.bam	SRR1506763	@dbgap@:reads/SRP012006/SRS625249/SRX561619/SRR1506763/SRR1506763.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMMN-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMMN-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMU-01A-02D	DNA	EFO	SRS654003		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMMU-01A-02D A44610 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A44610	SRX645949	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMMU-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-50-PAJMMU-01A-02D A44610 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44610_1_lane_dupsFlagged.bam	SRR1506844	@dbgap@:reads/SRP012006/SRS654003/SRX645949/SRR1506844/SRR1506844.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMMU-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMMU-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMMW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMW-01A-03D	DNA	EFO	SRS654087		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMMW-01A-03D A41292 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41292	SRX646049	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJMMW-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMMW-01A-03D A41292 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41292_1_lane_dupsFlagged.bam	SRR1506906	@dbgap@:reads/SRP012006/SRS654087/SRX646049/SRR1506906/SRR1506906.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMMW-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMMW-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMMY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMY-01A-02D	DNA	EFO	SRS625156		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMMY-01A-02D A33813 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	292	A33813	SRX561263	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMMY-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMMY-01A-02D A33813 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33813_1_lane_dupsFlagged.bam	SRR1315637	@dbgap@:reads/SRP012006/SRS625156/SRX561263/SRR1315637/SRR1315637.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMMY-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMMY-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMMZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMMZ-01A-02D	DNA	EFO	SRS654057		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMMZ-01A-02D A44611 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44611	SRX646016	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMMZ-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJMMZ-01A-02D A44611 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44611_1_lane_dupsFlagged.bam	SRR1506800	@dbgap@:reads/SRP012006/SRS654057/SRX646016/SRR1506800/SRR1506800.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMMZ-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMMZ-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMNR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMNR-01A-01D	DNA	EFO	SRS654155		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMNR-01A-01D A41293 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41293	SRX646117	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJMNR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMNR-01A-01D A41293 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41293_1_lane_dupsFlagged.bam	SRR1506880	@dbgap@:reads/SRP012006/SRS654155/SRX646117/SRR1506880/SRR1506880.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMNR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMNR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMNW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMNW-01A-02D	DNA	EFO	SRS654034		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMNW-01A-02D A44612 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44612	SRX645987	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMNW-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJMNW-01A-02D A44612 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44612_1_lane_dupsFlagged.bam	SRR1506830	@dbgap@:reads/SRP012006/SRS654034/SRX645987/SRR1506830/SRR1506830.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMNW-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMNW-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMNZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMNZ-01A-01D	DNA	EFO	SRS654073		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMNZ-01A-01D A41294 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41294	SRX646035	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMNZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMNZ-01A-01D A41294 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41294_1_lane_dupsFlagged.bam	SRR1506890	@dbgap@:reads/SRP012006/SRS654073/SRX646035/SRR1506890/SRR1506890.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMNZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMNZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMPH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMPH-01A-02D	DNA	EFO	SRS654099		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMPH-01A-02D A41295 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41295	SRX646061	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJMPH-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMPH-01A-02D A41295 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41295_1_lane_dupsFlagged.bam	SRR1506912	@dbgap@:reads/SRP012006/SRS654099/SRX646061/SRR1506912/SRR1506912.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMPH-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMPH-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMPL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMPL-01A-03D	DNA	EFO	SRS641130		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMPL-01A-03D A44699 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44699	SRX610053	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMPL-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJMPL-01A-03D A44699 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44699_1_lane_dupsFlagged.bam	SRR1424435	@dbgap@:reads/SRP012006/SRS641130/SRX610053/SRR1424435/SRR1424435.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMPL-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMPL-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMPP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMPP-01A-01D	DNA	EFO	SRS625296		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMPP-01A-01D A41125 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41125	SRX561666	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMPP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMPP-01A-01D A41125 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41125_1_lane_dupsFlagged.bam	SRR1506714	@dbgap@:reads/SRP012006/SRS625296/SRX561666/SRR1506714/SRR1506714.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMPP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMPP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMPR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMPR-01A-03D	DNA	EFO	SRS641152		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMPR-01A-03D A44700 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44700	SRX610084	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMPR-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJMPR-01A-03D A44700 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44700_1_lane_dupsFlagged.bam	SRR1424384	@dbgap@:reads/SRP012006/SRS641152/SRX610084/SRR1424384/SRR1424384.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMPR-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMPR-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMPV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMPV-01A-02D	DNA	EFO	SRS654019		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMPV-01A-02D A44613 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44613	SRX645969	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMPV-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJMPV-01A-02D A44613 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44613_1_lane_dupsFlagged.bam	SRR1506813	@dbgap@:reads/SRP012006/SRS654019/SRX645969/SRR1506813/SRR1506813.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMPV-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMPV-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRH-01A-01D	DNA	EFO	SRS654081		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMRH-01A-01D A41296 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41296	SRX646042	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJMRH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMRH-01A-01D A41296 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41296_1_lane_dupsFlagged.bam	SRR1506885	@dbgap@:reads/SRP012006/SRS654081/SRX646042/SRR1506885/SRR1506885.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMRH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMRH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMRK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRK-01A-01D	DNA	EFO	SRS654008		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMRK-01A-01D A44573 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44573	SRX645954	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMRK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJMRK-01A-01D A44573 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44573_1_lane_dupsFlagged.bam	SRR1506841	@dbgap@:reads/SRP012006/SRS654008/SRX645954/SRR1506841/SRR1506841.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMRK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMRK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRL-01A-01D	DNA	EFO	SRS118133		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMRL-01A-01D A44723 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44723	SRX610062	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJMRL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJMRL-01A-01D A44723 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44723_1_lane_dupsFlagged.bam	SRR1424343	@dbgap@:reads/SRP012006/SRS118133/SRX610062/SRR1424343/SRR1424343.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMRL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMRL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRS-01A-01D	DNA	EFO	SRS625097		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMRS-01A-01D A33693 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A33693	SRX561201	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMRS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMRS-01A-01D A33693 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33693_1_lane_dupsFlagged.bam	SRR1315589	@dbgap@:reads/SRP012006/SRS625097/SRX561201/SRR1315589/SRR1315589.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMRS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMRS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMRT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRT-01A-01D	DNA	EFO	SRS625185		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMRT-01A-01D A33814 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	292	A33814	SRX561291	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMRT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMRT-01A-01D A33814 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33814_1_lane_dupsFlagged.bam	SRR1315664	@dbgap@:reads/SRP012006/SRS625185/SRX561291/SRR1315664/SRR1315664.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMRT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMRT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRX-01A-01D	DNA	EFO	SRS625044		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMRX-01A-01D A33694 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A33694	SRX561150	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMRX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMRX-01A-01D A33694 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33694_1_lane_dupsFlagged.bam	SRR1315599	@dbgap@:reads/SRP012006/SRS625044/SRX561150/SRR1315599/SRR1315599.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMRX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMRX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMRY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMRY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMRY-01A-01D	DNA	EFO	SRS654016		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMRY-01A-01D A44574 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44574	SRX645966	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMRY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJMRY-01A-01D A44574 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44574_1_lane_dupsFlagged.bam	SRR1506786	@dbgap@:reads/SRP012006/SRS654016/SRX645966/SRR1506786/SRR1506786.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMRY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMRY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMSE-01A-01D	DNA	EFO	SRS160354		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMSE-01A-01D A41389 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41389	SRX608467	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMSE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAJMSE-01A-01D A41389 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41389_1_lane_dupsFlagged.bam	SRR1422181	@dbgap@:reads/SRP012006/SRS160354/SRX608467/SRR1422181/SRR1422181.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMSE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMSE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMSK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMSK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMSK-01A-01D	DNA	EFO	SRS625028		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMSK-01A-01D A33695 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	314	A33695	SRX561134	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMSK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMSK-01A-01D A33695 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33695_1_lane_dupsFlagged.bam	SRR1315592	@dbgap@:reads/SRP012006/SRS625028/SRX561134/SRR1315592/SRR1315592.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMSK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMSK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMSR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMSR-01A-02D	DNA	EFO	SRS654036		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMSR-01A-02D A44614 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44614	SRX645988	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMSR-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJMSR-01A-02D A44614 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44614_1_lane_dupsFlagged.bam	SRR1506791	@dbgap@:reads/SRP012006/SRS654036/SRX645988/SRR1506791/SRR1506791.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMSR-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMSR-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMTR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMTR-01A-01D	DNA	EFO	SRS654108		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMTR-01A-01D A41297 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41297	SRX646070	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMTR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMTR-01A-01D A41297 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41297_1_lane_dupsFlagged.bam	SRR1506878	@dbgap@:reads/SRP012006/SRS654108/SRX646070/SRR1506878/SRR1506878.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMTR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMTR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMUE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMUE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUE-01A-01D	DNA	EFO	SRS625136		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMUE-01A-01D A33815 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	291	A33815	SRX561242	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMUE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMUE-01A-01D A33815 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33815_1_lane_dupsFlagged.bam	SRR1315687	@dbgap@:reads/SRP012006/SRS625136/SRX561242/SRR1315687/SRR1315687.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMUE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMUE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMUF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUF-01A-01D	DNA	EFO	SRS190149		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMUF-01A-01D A41390 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41390	SRX608493	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMUF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-50-PAJMUF-01A-01D A41390 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41390_1_lane_dupsFlagged.bam	SRR1422226	@dbgap@:reads/SRP012006/SRS190149/SRX608493/SRR1422226/SRR1422226.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMUF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMUF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMUI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUI-01A-01D	DNA	EFO	SRS654119		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMUI-01A-01D A41298 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41298	SRX646082	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMUI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMUI-01A-01D A41298 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41298_1_lane_dupsFlagged.bam	SRR1506894	@dbgap@:reads/SRP012006/SRS654119/SRX646082/SRR1506894/SRR1506894.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMUI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMUI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMUM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUM-01A-01D	DNA	EFO	SRS625258		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMUM-01A-01D A41126 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41126	SRX561628	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMUM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMUM-01A-01D A41126 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41126_1_lane_dupsFlagged.bam	SRR1506713	@dbgap@:reads/SRP012006/SRS625258/SRX561628/SRR1506713/SRR1506713.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMUM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMUM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUS-01A-01D	DNA	EFO	SRS653236		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMUS-01A-01D A41127 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41127	SRX645051	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMUS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMUS-01A-01D A41127 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41127_1_lane_dupsFlagged.bam	SRR1506745	@dbgap@:reads/SRP012006/SRS653236/SRX645051/SRR1506745/SRR1506745.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMUS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMUS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMUY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMUY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMUY-01A-01D	DNA	EFO	SRS625116		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMUY-01A-01D A33816 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	291	A33816	SRX561222	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMUY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMUY-01A-01D A33816 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33816_1_lane_dupsFlagged.bam	SRR1315640	@dbgap@:reads/SRP012006/SRS625116/SRX561222/SRR1315640/SRR1315640.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMUY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMUY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVC-01A-02D	DNA	EFO	SRS654116		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMVC-01A-02D A41299 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41299	SRX646078	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJMVC-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMVC-01A-02D A41299 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41299_1_lane_dupsFlagged.bam	SRR1506922	@dbgap@:reads/SRP012006/SRS654116/SRX646078/SRR1506922/SRR1506922.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMVC-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMVC-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMVD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVD-01A-01D	DNA	EFO	SRS653223		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMVD-01A-01D A41128 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41128	SRX645038	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMVD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMVD-01A-01D A41128 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41128_1_lane_dupsFlagged.bam	SRR1506682	@dbgap@:reads/SRP012006/SRS653223/SRX645038/SRR1506682/SRR1506682.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMVD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMVD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMVG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMVG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVG-01A-02D	DNA	EFO	SRS654060		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMVG-01A-02D A44616 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44616	SRX646018	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMVG-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJMVG-01A-02D A44616 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44616_1_lane_dupsFlagged.bam	SRR1506807	@dbgap@:reads/SRP012006/SRS654060/SRX646018/SRR1506807/SRR1506807.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMVG-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMVG-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMVI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVI-01A-01D	DNA	EFO	SRS625029		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMVI-01A-01D A33696 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	314	A33696	SRX561135	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMVI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMVI-01A-01D A33696 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33696_1_lane_dupsFlagged.bam	SRR1315615	@dbgap@:reads/SRP012006/SRS625029/SRX561135/SRR1315615/SRR1315615.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMVI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMVI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMVJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVJ-01A-02D	DNA	EFO	SRS654055		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMVJ-01A-02D A44617 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A44617	SRX646014	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMVJ-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-50-PAJMVJ-01A-02D A44617 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44617_1_lane_dupsFlagged.bam	SRR1506801	@dbgap@:reads/SRP012006/SRS654055/SRX646014/SRR1506801/SRR1506801.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMVJ-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMVJ-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMVK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVK-01A-02D	DNA	EFO	SRS625118		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMVK-01A-02D A33817 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	301	A33817	SRX561224	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMVK-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMVK-01A-02D A33817 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33817_1_lane_dupsFlagged.bam	SRR1315718	@dbgap@:reads/SRP012006/SRS625118/SRX561224/SRR1315718/SRR1315718.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMVK-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMVK-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMVL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVL-01A-01D	DNA	EFO	SRS654118		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMVL-01A-01D A41300 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41300	SRX646081	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMVL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMVL-01A-01D A41300 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41300_1_lane_dupsFlagged.bam	SRR1506946	@dbgap@:reads/SRP012006/SRS654118/SRX646081/SRR1506946/SRR1506946.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMVL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMVL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMVU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVU-01A-02D	DNA	EFO	SRS654121		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMVU-01A-02D A41301 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41301	SRX646083	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJMVU-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMVU-01A-02D A41301 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41301_1_lane_dupsFlagged.bam	SRR1506881	@dbgap@:reads/SRP012006/SRS654121/SRX646083/SRR1506881/SRR1506881.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMVU-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMVU-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMVW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVW-01A-01D	DNA	EFO	SRS625039		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMVW-01A-01D A33697 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	287	A33697	SRX561145	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMVW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMVW-01A-01D A33697 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33697_1_lane_dupsFlagged.bam	SRR1315584	@dbgap@:reads/SRP012006/SRS625039/SRX561145/SRR1315584/SRR1315584.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMVW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMVW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVX-01A-01D	DNA	EFO	SRS625264		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMVX-01A-01D A41129 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41129	SRX561634	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMVX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMVX-01A-01D A41129 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41129_1_lane_dupsFlagged.bam	SRR1506742	@dbgap@:reads/SRP012006/SRS625264/SRX561634/SRR1506742/SRR1506742.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMVX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMVX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMWC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMWC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMWC-01A-01D	DNA	EFO	SRS625151		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMWC-01A-01D A33818 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	301	A33818	SRX561256	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMWC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMWC-01A-01D A33818 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33818_1_lane_dupsFlagged.bam	SRR1315681	@dbgap@:reads/SRP012006/SRS625151/SRX561256/SRR1315681/SRR1315681.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMWC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMWC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMWF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMWF-01A-01D	DNA	EFO	SRS654100		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMWF-01A-01D A41302 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41302	SRX646062	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJMWF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMWF-01A-01D A41302 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41302_1_lane_dupsFlagged.bam	SRR1506861	@dbgap@:reads/SRP012006/SRS654100/SRX646062/SRR1506861/SRR1506861.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMWF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMWF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMWN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMWN-01A-01D	DNA	EFO	SRS625304		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMWN-01A-01D A41130 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41130	SRX561674	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMWN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMWN-01A-01D A41130 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41130_1_lane_dupsFlagged.bam	SRR1506681	@dbgap@:reads/SRP012006/SRS625304/SRX561674/SRR1506681/SRR1506681.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMWN-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMWN-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMWP-01A-02D	DNA	EFO	SRS654005		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMWP-01A-02D A44618 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A44618	SRX645951	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMWP-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-50-PAJMWP-01A-02D A44618 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44618_1_lane_dupsFlagged.bam	SRR1506833	@dbgap@:reads/SRP012006/SRS654005/SRX645951/SRR1506833/SRR1506833.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMWP-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMWP-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMWX-01A-02D	DNA	EFO	SRS654054		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMWX-01A-02D A44619 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44619	SRX646013	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMWX-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJMWX-01A-02D A44619 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44619_1_lane_dupsFlagged.bam	SRR1506809	@dbgap@:reads/SRP012006/SRS654054/SRX646013/SRR1506809/SRR1506809.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMWX-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMWX-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMWZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMWZ-01A-02D	DNA	EFO	SRS654013		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMWZ-01A-02D A44620 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44620	SRX645962	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMWZ-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJMWZ-01A-02D A44620 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44620_1_lane_dupsFlagged.bam	SRR1506859	@dbgap@:reads/SRP012006/SRS654013/SRX645962/SRR1506859/SRR1506859.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMWZ-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMWZ-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMXE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXE-01A-01D	DNA	EFO	SRS625307		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMXE-01A-01D A41131 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41131	SRX561677	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMXE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMXE-01A-01D A41131 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41131_1_lane_dupsFlagged.bam	SRR1506722	@dbgap@:reads/SRP012006/SRS625307/SRX561677/SRR1506722/SRR1506722.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMXE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMXE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXF-01A-01D	DNA	EFO	SRS118135		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMXF-01A-01D A41391 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41391	SRX608476	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMXF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-50-PAJMXF-01A-01D A41391 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41391_1_lane_dupsFlagged.bam	SRR1422228	@dbgap@:reads/SRP012006/SRS118135/SRX608476/SRR1422228/SRR1422228.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMXF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMXF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMXK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXK-01A-01D	DNA	EFO	SRS625270		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMXK-01A-01D A41132 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41132	SRX561640	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMXK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMXK-01A-01D A41132 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41132_1_lane_dupsFlagged.bam	SRR1506765	@dbgap@:reads/SRP012006/SRS625270/SRX561640/SRR1506765/SRR1506765.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMXK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMXK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMXP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMXP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXP-01A-01D	DNA	EFO	SRS654092		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMXP-01A-01D A41303 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41303	SRX646055	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJMXP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJMXP-01A-01D A41303 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41303_1_lane_dupsFlagged.bam	SRR1506868	@dbgap@:reads/SRP012006/SRS654092/SRX646055/SRR1506868/SRR1506868.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMXP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMXP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMXR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMXR-01A-03D	DNA	EFO	SRS641117		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMXR-01A-03D A44701 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44701	SRX610036	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMXR-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJMXR-01A-03D A44701 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44701_1_lane_dupsFlagged.bam	SRR1424378	@dbgap@:reads/SRP012006/SRS641117/SRX610036/SRR1424378/SRR1424378.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMXR-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMXR-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMYA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMYA-01A-01D	DNA	EFO	SRS654015		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMYA-01A-01D A44560 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44560	SRX645964	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMYA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJMYA-01A-01D A44560 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44560_1_lane_dupsFlagged.bam	SRR1506770	@dbgap@:reads/SRP012006/SRS654015/SRX645964/SRR1506770/SRR1506770.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMYA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMYA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMYM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMYM-01A-03D	DNA	EFO	SRS641165		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMYM-01A-03D A44702 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44702	SRX610099	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMYM-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJMYM-01A-03D A44702 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44702_1_lane_dupsFlagged.bam	SRR1424394	@dbgap@:reads/SRP012006/SRS641165/SRX610099/SRR1424394/SRR1424394.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMYM-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMYM-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMYU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMYU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMYU-01A-02D	DNA	EFO	SRS653998		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMYU-01A-02D A44621 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44621	SRX645944	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMYU-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJMYU-01A-02D A44621 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44621_1_lane_dupsFlagged.bam	SRR1506821	@dbgap@:reads/SRP012006/SRS653998/SRX645944/SRR1506821/SRR1506821.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMYU-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMYU-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMZF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMZF-01A-03D	DNA	EFO	SRS641195		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMZF-01A-03D A44703 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44703	SRX610140	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMZF-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJMZF-01A-03D A44703 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44703_1_lane_dupsFlagged.bam	SRR1424359	@dbgap@:reads/SRP012006/SRS641195/SRX610140/SRR1424359/SRR1424359.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMZF-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMZF-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMZI-01A-01D	DNA	EFO	SRS625187		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMZI-01A-01D A33819 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	281	A33819	SRX561293	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMZI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJMZI-01A-01D A33819 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33819_1_lane_dupsFlagged.bam	SRR1315685	@dbgap@:reads/SRP012006/SRS625187/SRX561293/SRR1315685/SRR1315685.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMZI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMZI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMZN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMZN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMZN-01A-02D	DNA	EFO	SRS654024		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMZN-01A-02D A44622 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44622	SRX645976	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMZN-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJMZN-01A-02D A44622 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44622_1_lane_dupsFlagged.bam	SRR1506828	@dbgap@:reads/SRP012006/SRS654024/SRX645976/SRR1506828/SRR1506828.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMZN-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMZN-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJMZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJMZV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMZV-01A-02D	DNA	EFO	SRS654053		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJMZV-01A-02D A44623 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44623	SRX646011	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJMZV-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJMZV-01A-02D A44623 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44623_1_lane_dupsFlagged.bam	SRR1506789	@dbgap@:reads/SRP012006/SRS654053/SRX646011/SRR1506789/SRR1506789.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJMZV-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJMZV-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAA-01A-01D	DNA	EFO	SRS190151		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNAA-01A-01D A44724 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44724	SRX610052	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJNAA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNAA-01A-01D A44724 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44724_1_lane_dupsFlagged.bam	SRR1424413	@dbgap@:reads/SRP012006/SRS190151/SRX610052/SRR1424413/SRR1424413.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNAA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNAA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNAM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAM-01A-01D	DNA	EFO	SRS654139		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNAM-01A-01D A41304 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41304	SRX646101	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJNAM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNAM-01A-01D A41304 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41304_1_lane_dupsFlagged.bam	SRR1506936	@dbgap@:reads/SRP012006/SRS654139/SRX646101/SRR1506936/SRR1506936.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNAM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNAM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNAP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAP-01A-01D	DNA	EFO	SRS625260		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNAP-01A-01D A41133 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41133	SRX561630	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNAP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNAP-01A-01D A41133 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41133_1_lane_dupsFlagged.bam	SRR1506734	@dbgap@:reads/SRP012006/SRS625260/SRX561630/SRR1506734/SRR1506734.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNAP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNAP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNAU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAU-01A-02D	DNA	EFO	SRS654066		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNAU-01A-02D A44624 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44624	SRX646027	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNAU-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJNAU-01A-02D A44624 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44624_1_lane_dupsFlagged.bam	SRR1506847	@dbgap@:reads/SRP012006/SRS654066/SRX646027/SRR1506847/SRR1506847.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNAU-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNAU-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNAV-01A-01D	DNA	EFO	SRS190153		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNAV-01A-01D A41392 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41392	SRX608431	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNAV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-50-PAJNAV-01A-01D A41392 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41392_1_lane_dupsFlagged.bam	SRR1422188	@dbgap@:reads/SRP012006/SRS190153/SRX608431/SRR1422188/SRR1422188.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNAV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNAV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNBA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNBA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNBA-01A-01D	DNA	EFO	SRS625291		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNBA-01A-01D A41134 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41134	SRX561661	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNBA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNBA-01A-01D A41134 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41134_1_lane_dupsFlagged.bam	SRR1506719	@dbgap@:reads/SRP012006/SRS625291/SRX561661/SRR1506719/SRR1506719.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNBA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNBA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNBE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNBE-01A-01D	DNA	EFO	SRS625128		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNBE-01A-01D A33822 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	292	A33822	SRX561234	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNBE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNBE-01A-01D A33822 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33822_1_lane_dupsFlagged.bam	SRR1315673	@dbgap@:reads/SRP012006/SRS625128/SRX561234/SRR1315673/SRR1315673.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNBE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNBE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNBG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNBG-01A-03D	DNA	EFO	SRS641127		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNBG-01A-03D A44704 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44704	SRX610049	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNBG-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNBG-01A-03D A44704 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44704_1_lane_dupsFlagged.bam	SRR1424353	@dbgap@:reads/SRP012006/SRS641127/SRX610049/SRR1424353/SRR1424353.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNBG-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNBG-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNBI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNBI-01A-02D	DNA	EFO	SRS654045		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNBI-01A-02D A44625 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A44625	SRX645999	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNBI-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-50-PAJNBI-01A-02D A44625 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44625_1_lane_dupsFlagged.bam	SRR1506838	@dbgap@:reads/SRP012006/SRS654045/SRX645999/SRR1506838/SRR1506838.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNBI-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNBI-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNBN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNBN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNBN-01A-01D	DNA	EFO	SRS190155		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNBN-01A-01D A44736 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44736	SRX610147	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNBN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNBN-01A-01D A44736 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44736_1_lane_dupsFlagged.bam	SRR1424379	@dbgap@:reads/SRP012006/SRS190155/SRX610147/SRR1424379/SRR1424379.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNBN-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNBN-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNBP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNBP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNBP-01A-01D	DNA	EFO	SRS639870		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNBP-01A-01D A41305 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41305	SRX608408	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNBP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-50-PAJNBP-01A-01D A41305 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41305_1_lane_dupsFlagged.bam	SRR1422229	@dbgap@:reads/SRP012006/SRS639870/SRX608408/SRR1422229/SRR1422229.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNBP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNBP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNBS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNBS-01A-01D	DNA	EFO	SRS639873		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNBS-01A-01D A41306 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41306	SRX608414	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJNBS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-50-PAJNBS-01A-01D A41306 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41306_1_lane_dupsFlagged.bam	SRR1422161	@dbgap@:reads/SRP012006/SRS639873/SRX608414/SRR1422161/SRR1422161.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNBS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNBS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNBU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNBU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNBU-01A-02D	DNA	EFO	SRS654025		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNBU-01A-02D A44626 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A44626	SRX645977	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNBU-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-50-PAJNBU-01A-02D A44626 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44626_1_lane_dupsFlagged.bam	SRR1506783	@dbgap@:reads/SRP012006/SRS654025/SRX645977/SRR1506783/SRR1506783.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNBU-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNBU-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNBW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNBW-01A-01D	DNA	EFO	SRS625144		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNBW-01A-01D A33824 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	291	A33824	SRX561249	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNBW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNBW-01A-01D A33824 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33824_1_lane_dupsFlagged.bam	SRR1315652	@dbgap@:reads/SRP012006/SRS625144/SRX561249/SRR1315652/SRR1315652.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNBW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNBW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNBZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNBZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNBZ-01A-03D	DNA	EFO	SRS641128		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNBZ-01A-03D A44705 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44705	SRX610050	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNBZ-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNBZ-01A-03D A44705 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44705_1_lane_dupsFlagged.bam	SRR1424330	@dbgap@:reads/SRP012006/SRS641128/SRX610050/SRR1424330/SRR1424330.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNBZ-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNBZ-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNCA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCA-01A-03D	DNA	EFO	SRS641153		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCA-01A-03D A44706 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44706	SRX610085	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCA-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNCA-01A-03D A44706 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44706_1_lane_dupsFlagged.bam	SRR1424335	@dbgap@:reads/SRP012006/SRS641153/SRX610085/SRR1424335/SRR1424335.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNCA-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNCA-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCC-01A-01D	DNA	EFO	SRS301278		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCC-01A-01D A41393 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41393	SRX608454	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-50-PAJNCC-01A-01D A41393 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41393_1_lane_dupsFlagged.bam	SRR1422160	@dbgap@:reads/SRP012006/SRS301278/SRX608454/SRR1422160/SRR1422160.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNCC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNCC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCJ-01A-02D	DNA	EFO	SRS625063		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCJ-01A-02D A33698 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	287	A33698	SRX561169	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCJ-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNCJ-01A-02D A33698 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33698_1_lane_dupsFlagged.bam	SRR1315573	@dbgap@:reads/SRP012006/SRS625063/SRX561169/SRR1315573/SRR1315573.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNCJ-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNCJ-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNCK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNCK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCK-01A-03D	DNA	EFO	SRS641145		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCK-01A-03D A44707 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44707	SRX610075	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCK-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNCK-01A-03D A44707 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44707_1_lane_dupsFlagged.bam	SRR1424351	@dbgap@:reads/SRP012006/SRS641145/SRX610075/SRR1424351/SRR1424351.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNCK-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNCK-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCL-01A-01D	DNA	EFO	SRS639881		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCL-01A-01D A41307 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41307	SRX608423	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJNCL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAJNCL-01A-01D A41307 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41307_1_lane_dupsFlagged.bam	SRR1422174	@dbgap@:reads/SRP012006/SRS639881/SRX608423/SRR1422174/SRR1422174.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNCL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNCL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNCN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCN-01A-01D	DNA	EFO	SRS625145		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCN-01A-01D A33825 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	301	A33825	SRX561251	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNCN-01A-01D A33825 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33825_1_lane_dupsFlagged.bam	SRR1315700	@dbgap@:reads/SRP012006/SRS625145/SRX561251/SRR1315700/SRR1315700.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNCN-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNCN-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNCU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNCU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCU-01A-03D	DNA	EFO	SRS641139		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCU-01A-03D A44708 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44708	SRX610066	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCU-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNCU-01A-03D A44708 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44708_1_lane_dupsFlagged.bam	SRR1424410	@dbgap@:reads/SRP012006/SRS641139/SRX610066/SRR1424410/SRR1424410.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNCU-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNCU-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNCX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCX-01A-03D	DNA	EFO	SRS641157		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCX-01A-03D A44709 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44709	SRX610090	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCX-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNCX-01A-03D A44709 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44709_1_lane_dupsFlagged.bam	SRR1424431	@dbgap@:reads/SRP012006/SRS641157/SRX610090/SRR1424431/SRR1424431.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNCX-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNCX-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNCZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNCZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNCZ-01A-01D	DNA	EFO	SRS301282		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNCZ-01A-01D A41394 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41394	SRX608416	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNCZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAJNCZ-01A-01D A41394 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41394_1_lane_dupsFlagged.bam	SRR1422184	@dbgap@:reads/SRP012006/SRS301282/SRX608416/SRR1422184/SRR1422184.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNCZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNCZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNDB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDB-01A-01D	DNA	EFO	SRS654056		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNDB-01A-01D A44575 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44575	SRX646015	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNDB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJNDB-01A-01D A44575 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44575_1_lane_dupsFlagged.bam	SRR1506788	@dbgap@:reads/SRP012006/SRS654056/SRX646015/SRR1506788/SRR1506788.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNDB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNDB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDC-01A-01D	DNA	EFO	SRS625125		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNDC-01A-01D A33826 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	301	A33826	SRX561230	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNDC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNDC-01A-01D A33826 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33826_1_lane_dupsFlagged.bam	SRR1315675	@dbgap@:reads/SRP012006/SRS625125/SRX561230/SRR1315675/SRR1315675.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNDC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNDC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNDS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDS-01A-02D	DNA	EFO	SRS654043		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNDS-01A-02D A44627 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44627	SRX645998	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNDS-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJNDS-01A-02D A44627 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44627_1_lane_dupsFlagged.bam	SRR1506790	@dbgap@:reads/SRP012006/SRS654043/SRX645998/SRR1506790/SRR1506790.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNDS-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNDS-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNDU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDU-01A-01D	DNA	EFO	SRS190157		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNDU-01A-01D A41395 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41395	SRX608422	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNDU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAJNDU-01A-01D A41395 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41395_1_lane_dupsFlagged.bam	SRR1422153	@dbgap@:reads/SRP012006/SRS190157/SRX608422/SRR1422153/SRR1422153.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNDU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNDU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNDX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNDX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNDX-01A-01D	DNA	EFO	SRS625024		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNDX-01A-01D A33699 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	297	A33699	SRX561131	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNDX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNDX-01A-01D A33699 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33699_1_lane_dupsFlagged.bam	SRR1315617	@dbgap@:reads/SRP012006/SRS625024/SRX561131/SRR1315617/SRR1315617.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNDX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNDX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNEB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNEB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEB-01A-02D	DNA	EFO	SRS654022		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNEB-01A-02D A44628 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44628	SRX645973	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNEB-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJNEB-01A-02D A44628 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44628_1_lane_dupsFlagged.bam	SRR1506777	@dbgap@:reads/SRP012006/SRS654022/SRX645973/SRR1506777/SRR1506777.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNEB-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNEB-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNEC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNEC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEC-01A-01D	DNA	EFO	SRS190159		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNEC-01A-01D A41396 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41396	SRX608413	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNEC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAJNEC-01A-01D A41396 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41396_1_lane_dupsFlagged.bam	SRR1422207	@dbgap@:reads/SRP012006/SRS190159/SRX608413/SRR1422207/SRR1422207.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNEC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNEC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNEE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEE-01A-01D	DNA	EFO	SRS625188		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNEE-01A-01D A33827 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	281	A33827	SRX561294	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNEE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNEE-01A-01D A33827 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33827_1_lane_dupsFlagged.bam	SRR1315682	@dbgap@:reads/SRP012006/SRS625188/SRX561294/SRR1315682/SRR1315682.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNEE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNEE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNEH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEH-01A-02D	DNA	EFO	SRS654031		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNEH-01A-02D A44629 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44629	SRX645984	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNEH-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJNEH-01A-02D A44629 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44629_1_lane_dupsFlagged.bam	SRR1506819	@dbgap@:reads/SRP012006/SRS654031/SRX645984/SRR1506819/SRR1506819.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNEH-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNEH-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNEL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNEL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEL-01A-02D	DNA	EFO	SRS653997		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNEL-01A-02D A44630 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44630	SRX645943	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNEL-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJNEL-01A-02D A44630 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44630_1_lane_dupsFlagged.bam	SRR1506837	@dbgap@:reads/SRP012006/SRS653997/SRX645943/SRR1506837/SRR1506837.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNEL-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNEL-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNEX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNEX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNEX-01A-01D	DNA	EFO	SRS653221		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNEX-01A-01D A41135 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41135	SRX645036	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNEX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNEX-01A-01D A41135 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41135_1_lane_dupsFlagged.bam	SRR1506692	@dbgap@:reads/SRP012006/SRS653221/SRX645036/SRR1506692/SRR1506692.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNEX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNEX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNFB-01A-01D	DNA	EFO	SRS653240		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNFB-01A-01D A41136 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41136	SRX645055	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNFB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNFB-01A-01D A41136 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41136_1_lane_dupsFlagged.bam	SRR1506705	@dbgap@:reads/SRP012006/SRS653240/SRX645055/SRR1506705/SRR1506705.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNFB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNFB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNFD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNFD-01A-01D	DNA	EFO	SRS625167		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNFD-01A-01D A33828 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	281	A33828	SRX561273	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNFD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNFD-01A-01D A33828 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33828_1_lane_dupsFlagged.bam	SRR1315635	@dbgap@:reads/SRP012006/SRS625167/SRX561273/SRR1315635/SRR1315635.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNFD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNFD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNFH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNFH-01A-01D	DNA	EFO	SRS625253		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNFH-01A-01D A41137 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41137	SRX561623	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNFH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNFH-01A-01D A41137 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41137_1_lane_dupsFlagged.bam	SRR1506684	@dbgap@:reads/SRP012006/SRS625253/SRX561623/SRR1506684/SRR1506684.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNFH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNFH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNGA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGA-01A-01D	DNA	EFO	SRS625254		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNGA-01A-01D A41138 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41138	SRX561624	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNGA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNGA-01A-01D A41138 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41138_1_lane_dupsFlagged.bam	SRR1506697	@dbgap@:reads/SRP012006/SRS625254/SRX561624/SRR1506697/SRR1506697.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNGA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNGA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNGB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGB-01A-01D	DNA	EFO	SRS625267		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNGB-01A-01D A41139 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41139	SRX561637	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNGB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNGB-01A-01D A41139 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41139_1_lane_dupsFlagged.bam	SRR1506688	@dbgap@:reads/SRP012006/SRS625267/SRX561637/SRR1506688/SRR1506688.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNGB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNGB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNGC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGC-01A-01D	DNA	EFO	SRS625257		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNGC-01A-01D A41140 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41140	SRX561627	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNGC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNGC-01A-01D A41140 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41140_1_lane_dupsFlagged.bam	SRR1506679	@dbgap@:reads/SRP012006/SRS625257/SRX561627/SRR1506679/SRR1506679.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNGC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNGC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-01A-02D	DNA	EFO	SRS625272		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNGH-01A-02D A41141 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41141	SRX561642	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNGH-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNGH-01A-02D A41141 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41141_1_lane_dupsFlagged.bam	SRR1506711	@dbgap@:reads/SRP012006/SRS625272/SRX561642/SRR1506711/SRR1506711.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNGH-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNGH-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-02A-01D	DNA	EFO	SRS160360		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNGH-02A-01D A44751 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44751	SRX610040	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNGH-02A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNGH-02A-01D A44751 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44751_1_lane_dupsFlagged.bam	SRR1424420	@dbgap@:reads/SRP012006/SRS160360/SRX610040/SRR1424420/SRR1424420.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNGH-02A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNGH-02A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNGJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNGJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGJ-01A-01D	DNA	EFO	SRS625303		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNGJ-01A-01D A41142 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41142	SRX561673	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNGJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNGJ-01A-01D A41142 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41142_1_lane_dupsFlagged.bam	SRR1506732	@dbgap@:reads/SRP012006/SRS625303/SRX561673/SRR1506732/SRR1506732.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNGJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNGJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNGK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGK-01A-02D	DNA	EFO	SRS654049		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNGK-01A-02D A44631 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44631	SRX646007	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNGK-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJNGK-01A-02D A44631 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44631_1_lane_dupsFlagged.bam	SRR1506843	@dbgap@:reads/SRP012006/SRS654049/SRX646007/SRR1506843/SRR1506843.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNGK-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNGK-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNGR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNGR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGR-01A-01D	DNA	EFO	SRS625101		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNGR-01A-01D A33829 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	292	A33829	SRX561207	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNGR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNGR-01A-01D A33829 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33829_1_lane_dupsFlagged.bam	SRR1315696	@dbgap@:reads/SRP012006/SRS625101/SRX561207/SRR1315696/SRR1315696.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNGR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNGR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNGU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGU-01A-01D	DNA	EFO	SRS653227		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNGU-01A-01D A41143 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41143	SRX645042	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNGU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNGU-01A-01D A41143 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41143_1_lane_dupsFlagged.bam	SRR1506698	@dbgap@:reads/SRP012006/SRS653227/SRX645042/SRR1506698/SRR1506698.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNGU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNGU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNHA-01A-01D	DNA	EFO	SRS653220		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNHA-01A-01D A41144 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41144	SRX645035	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNHA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNHA-01A-01D A41144 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41144_1_lane_dupsFlagged.bam	SRR1506727	@dbgap@:reads/SRP012006/SRS653220/SRX645035/SRR1506727/SRR1506727.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNHA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNHA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNHG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNHG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNHG-01A-01D	DNA	EFO	SRS639910		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNHG-01A-01D A41308 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41308	SRX608460	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNHG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAJNHG-01A-01D A41308 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41308_1_lane_dupsFlagged.bam	SRR1422195	@dbgap@:reads/SRP012006/SRS639910/SRX608460/SRR1422195/SRR1422195.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNHG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNHG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNHL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNHL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNHL-01A-01D	DNA	EFO	SRS625250		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNHL-01A-01D A41145 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41145	SRX561620	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNHL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNHL-01A-01D A41145 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41145_1_lane_dupsFlagged.bam	SRR1506747	@dbgap@:reads/SRP012006/SRS625250/SRX561620/SRR1506747/SRR1506747.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNHL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNHL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNHN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNHN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNHN-01A-01D	DNA	EFO	SRS625155		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNHN-01A-01D A33830 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	292	A33830	SRX561261	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNHN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNHN-01A-01D A33830 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33830_1_lane_dupsFlagged.bam	SRR1315671	@dbgap@:reads/SRP012006/SRS625155/SRX561261/SRR1315671/SRR1315671.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNHN-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNHN-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNHP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNHP-01A-03D	DNA	EFO	SRS641179		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNHP-01A-03D A44710 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44710	SRX610118	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNHP-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNHP-01A-03D A44710 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44710_1_lane_dupsFlagged.bam	SRR1424386	@dbgap@:reads/SRP012006/SRS641179/SRX610118/SRR1424386/SRR1424386.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNHP-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNHP-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNHV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNHV-01A-01D	DNA	EFO	SRS625075		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNHV-01A-01D A33700 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	297	A33700	SRX561181	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNHV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNHV-01A-01D A33700 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33700_1_lane_dupsFlagged.bam	SRR1315570	@dbgap@:reads/SRP012006/SRS625075/SRX561181/SRR1315570/SRR1315570.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNHV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNHV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNHW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNHW-01A-01D	DNA	EFO	SRS653994		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNHW-01A-01D A44576 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44576	SRX645940	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNHW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJNHW-01A-01D A44576 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44576_1_lane_dupsFlagged.bam	SRR1506804	@dbgap@:reads/SRP012006/SRS653994/SRX645940/SRR1506804/SRR1506804.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNHW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNHW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNHZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNHZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNHZ-01A-01D	DNA	EFO	SRS625025		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNHZ-01A-01D A33701 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A33701	SRX561130	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNHZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNHZ-01A-01D A33701 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33701_1_lane_dupsFlagged.bam	SRR1315559	@dbgap@:reads/SRP012006/SRS625025/SRX561130/SRR1315559/SRR1315559.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNHZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNHZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNID	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNID-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNID-01A-01D	DNA	EFO	SRS625089		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNID-01A-01D A33702 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A33702	SRX561195	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNID-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNID-01A-01D A33702 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33702_1_lane_dupsFlagged.bam	SRR1315585	@dbgap@:reads/SRP012006/SRS625089/SRX561195/SRR1315585/SRR1315585.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNID-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNID-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNIE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNIE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNIE-01A-01D	DNA	EFO	SRS625092		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNIE-01A-01D A33703 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	314	A33703	SRX561199	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNIE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNIE-01A-01D A33703 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33703_1_lane_dupsFlagged.bam	SRR1315590	@dbgap@:reads/SRP012006/SRS625092/SRX561199/SRR1315590/SRR1315590.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNIE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNIE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNIH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNIH-01A-01D	DNA	EFO	SRS625169		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNIH-01A-01D A33831 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	291	A33831	SRX561276	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNIH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNIH-01A-01D A33831 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33831_1_lane_dupsFlagged.bam	SRR1315633	@dbgap@:reads/SRP012006/SRS625169/SRX561276/SRR1315633/SRR1315633.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNIH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNIH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNIJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNIJ-01A-01D	DNA	EFO	SRS625082		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNIJ-01A-01D A33704 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	314	A33704	SRX561188	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNIJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNIJ-01A-01D A33704 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33704_1_lane_dupsFlagged.bam	SRR1315564	@dbgap@:reads/SRP012006/SRS625082/SRX561188/SRR1315564/SRR1315564.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNIJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNIJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNIM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNIM-01A-01D	DNA	EFO	SRS625041		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNIM-01A-01D A33705 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	287	A33705	SRX561147	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNIM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNIM-01A-01D A33705 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33705_1_lane_dupsFlagged.bam	SRR1315593	@dbgap@:reads/SRP012006/SRS625041/SRX561147/SRR1315593/SRR1315593.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNIM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNIM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNIS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNIS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNIS-01A-01D	DNA	EFO	SRS639895		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNIS-01A-01D A41309 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41309	SRX608440	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJNIS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAJNIS-01A-01D A41309 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41309_1_lane_dupsFlagged.bam	SRR1422158	@dbgap@:reads/SRP012006/SRS639895/SRX608440/SRR1422158/SRR1422158.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNIS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNIS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNIY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNIY-01A-01D	DNA	EFO	SRS654061		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNIY-01A-01D A44577 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A44577	SRX646020	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNIY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-50-PAJNIY-01A-01D A44577 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44577_1_lane_dupsFlagged.bam	SRR1506832	@dbgap@:reads/SRP012006/SRS654061/SRX646020/SRR1506832/SRR1506832.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNIY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNIY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNJC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNJC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJC-01A-01D	DNA	EFO	SRS625026		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNJC-01A-01D A33706 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	287	A33706	SRX561133	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNJC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNJC-01A-01D A33706 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33706_1_lane_dupsFlagged.bam	SRR1315561	@dbgap@:reads/SRP012006/SRS625026/SRX561133/SRR1315561/SRR1315561.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNJC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNJC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNJJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJJ-01A-02D	DNA	EFO	SRS625047		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNJJ-01A-02D A33707 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	297	A33707	SRX561153	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNJJ-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNJJ-01A-02D A33707 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33707_1_lane_dupsFlagged.bam	SRR1315571	@dbgap@:reads/SRP012006/SRS625047/SRX561153/SRR1315571/SRR1315571.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNJJ-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNJJ-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNJL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNJL-01A-01D	DNA	EFO	SRS639923		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNJL-01A-01D A41310 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41310	SRX608478	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJNJL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAJNJL-01A-01D A41310 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41310_1_lane_dupsFlagged.bam	SRR1422149	@dbgap@:reads/SRP012006/SRS639923/SRX608478/SRR1422149/SRR1422149.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNJL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNJL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNKA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNKA-01A-01D	DNA	EFO	SRS639874		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNKA-01A-01D A41311 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41311	SRX608412	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJNKA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-50-PAJNKA-01A-01D A41311 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41311_1_lane_dupsFlagged.bam	SRR1422187	@dbgap@:reads/SRP012006/SRS639874/SRX608412/SRR1422187/SRR1422187.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNKA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNKA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNKD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNKD-01A-01D	DNA	EFO	SRS625286		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNKD-01A-01D A41146 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41146	SRX561656	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNKD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNKD-01A-01D A41146 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41146_1_lane_dupsFlagged.bam	SRR1506721	@dbgap@:reads/SRP012006/SRS625286/SRX561656/SRR1506721/SRR1506721.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNKD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNKD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNKJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNKJ-01A-03D	DNA	EFO	SRS641147		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNKJ-01A-03D A44711 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44711	SRX610079	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNKJ-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNKJ-01A-03D A44711 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44711_1_lane_dupsFlagged.bam	SRR1424434	@dbgap@:reads/SRP012006/SRS641147/SRX610079/SRR1424434/SRR1424434.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNKJ-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNKJ-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNKL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNKL-01A-01D	DNA	EFO	SRS625292		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNKL-01A-01D A41147 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41147	SRX561662	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNKL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNKL-01A-01D A41147 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41147_1_lane_dupsFlagged.bam	SRR1506686	@dbgap@:reads/SRP012006/SRS625292/SRX561662/SRR1506686/SRR1506686.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNKL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNKL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNKP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNKP-01A-02D	DNA	EFO	SRS654028		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNKP-01A-02D A44632 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44632	SRX645981	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNKP-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJNKP-01A-02D A44632 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44632_1_lane_dupsFlagged.bam	SRR1506792	@dbgap@:reads/SRP012006/SRS654028/SRX645981/SRR1506792/SRR1506792.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNKP-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNKP-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNKS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNKS-01A-01D	DNA	EFO	SRS625278		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNKS-01A-01D A41148 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41148	SRX561648	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNKS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNKS-01A-01D A41148 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41148_1_lane_dupsFlagged.bam	SRR1506717	@dbgap@:reads/SRP012006/SRS625278/SRX561648/SRR1506717/SRR1506717.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNKS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNKS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNKX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNKX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNKX-01A-02D	DNA	EFO	SRS654014		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNKX-01A-02D A44633 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A44633	SRX645963	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNKX-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-50-PAJNKX-01A-02D A44633 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44633_1_lane_dupsFlagged.bam	SRR1506852	@dbgap@:reads/SRP012006/SRS654014/SRX645963/SRR1506852/SRR1506852.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNKX-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNKX-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNLA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNLA-01A-02D	DNA	EFO	SRS654062		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNLA-01A-02D A44634 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44634	SRX646021	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNLA-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJNLA-01A-02D A44634 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44634_1_lane_dupsFlagged.bam	SRR1506779	@dbgap@:reads/SRP012006/SRS654062/SRX646021/SRR1506779/SRR1506779.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNLA-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNLA-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNLK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNLK-01A-01D	DNA	EFO	SRS625175		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNLK-01A-01D A33833 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	301	A33833	SRX561282	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNLK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNLK-01A-01D A33833 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33833_1_lane_dupsFlagged.bam	SRR1315694	@dbgap@:reads/SRP012006/SRS625175/SRX561282/SRR1315694/SRR1315694.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNLK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNLK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNLR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNLR-01A-03D	DNA	EFO	SRS641122		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNLR-01A-03D A44712 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44712	SRX610042	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNLR-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNLR-01A-03D A44712 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44712_1_lane_dupsFlagged.bam	SRR1424325	@dbgap@:reads/SRP012006/SRS641122/SRX610042/SRR1424325/SRR1424325.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNLR-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNLR-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNLS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNLS-01A-01D	DNA	EFO	SRS625263		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNLS-01A-01D A41149 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41149	SRX561633	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNLS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNLS-01A-01D A41149 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41149_1_lane_dupsFlagged.bam	SRR1506748	@dbgap@:reads/SRP012006/SRS625263/SRX561633/SRR1506748/SRR1506748.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNLS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNLS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNLT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNLT-01A-02D	DNA	EFO	SRS625164		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNLT-01A-02D A33834 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	301	A33834	SRX561269	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNLT-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNLT-01A-02D A33834 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33834_1_lane_dupsFlagged.bam	SRR1315706	@dbgap@:reads/SRP012006/SRS625164/SRX561269/SRR1315706/SRR1315706.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNLT-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNLT-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNMA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNMA-01A-01D	DNA	EFO	SRS625308		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNMA-01A-01D A41150 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41150	SRX561678	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNMA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNMA-01A-01D A41150 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41150_1_lane_dupsFlagged.bam	SRR1506755	@dbgap@:reads/SRP012006/SRS625308/SRX561678/SRR1506755/SRR1506755.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNMA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNMA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNMD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNMD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNMD-01A-01D	DNA	EFO	SRS653230		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNMD-01A-01D A41151 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41151	SRX645045	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNMD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNMD-01A-01D A41151 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41151_1_lane_dupsFlagged.bam	SRR1506740	@dbgap@:reads/SRP012006/SRS653230/SRX645045/SRR1506740/SRR1506740.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNMD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNMD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNME-01A-02D	DNA	EFO	SRS654038		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNME-01A-02D A44635 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44635	SRX645992	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNME-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJNME-01A-02D A44635 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44635_1_lane_dupsFlagged.bam	SRR1506825	@dbgap@:reads/SRP012006/SRS654038/SRX645992/SRR1506825/SRR1506825.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNME-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNME-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNML-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNML-01A-01D	DNA	EFO	SRS639921		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNML-01A-01D A41312 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41312	SRX608474	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJNML-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-50-PAJNML-01A-01D A41312 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41312_1_lane_dupsFlagged.bam	SRR1422156	@dbgap@:reads/SRP012006/SRS639921/SRX608474/SRR1422156/SRR1422156.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNML-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNML-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNMT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNMT-01A-01D	DNA	EFO	SRS653238		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNMT-01A-01D A41152 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41152	SRX645053	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNMT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNMT-01A-01D A41152 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41152_1_lane_dupsFlagged.bam	SRR1506678	@dbgap@:reads/SRP012006/SRS653238/SRX645053/SRR1506678/SRR1506678.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNMT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNMT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNMV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNMV-01A-01D	DNA	EFO	SRS625305		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNMV-01A-01D A41153 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41153	SRX561675	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNMV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNMV-01A-01D A41153 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41153_1_lane_dupsFlagged.bam	SRR1506767	@dbgap@:reads/SRP012006/SRS625305/SRX561675/SRR1506767/SRR1506767.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNMV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNMV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNMZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNMZ-01A-01D	DNA	EFO	SRS639887		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNMZ-01A-01D A41313 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41313	SRX608429	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJNMZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-50-PAJNMZ-01A-01D A41313 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41313_1_lane_dupsFlagged.bam	SRR1422221	@dbgap@:reads/SRP012006/SRS639887/SRX608429/SRR1422221/SRR1422221.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNMZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNMZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-02D	DNA	EFO	SRS625274		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNNC-01A-02D A41154 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41154	SRX561644	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNNC-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNNC-01A-02D A41154 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41154_1_lane_dupsFlagged.bam	SRR1506736	@dbgap@:reads/SRP012006/SRS625274/SRX561644/SRR1506736/SRR1506736.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNNC-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNNC-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNND	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNND-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNND-01A-01D	DNA	EFO	SRS625142		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNND-01A-01D A33835 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	281	A33835	SRX561247	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNND-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNND-01A-01D A33835 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33835_1_lane_dupsFlagged.bam	SRR1315656	@dbgap@:reads/SRP012006/SRS625142/SRX561247/SRR1315656/SRR1315656.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNND-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNND-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNNF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNF-01A-01D	DNA	EFO	SRS625301		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNNF-01A-01D A41155 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41155	SRX561671	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNNF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNNF-01A-01D A41155 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41155_1_lane_dupsFlagged.bam	SRR1506685	@dbgap@:reads/SRP012006/SRS625301/SRX561671/SRR1506685/SRR1506685.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNNF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNNF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNNG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNG-01A-03D	DNA	EFO	SRS641172		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNNG-01A-03D A44713 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44713	SRX610110	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNNG-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNNG-01A-03D A44713 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44713_1_lane_dupsFlagged.bam	SRR1424323	@dbgap@:reads/SRP012006/SRS641172/SRX610110/SRR1424323/SRR1424323.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNNG-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNNG-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNR-01A-02D	DNA	EFO	SRS639941		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNNR-01A-02D A41314 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41314	SRX608499	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJNNR-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-50-PAJNNR-01A-02D A41314 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41314_1_lane_dupsFlagged.bam	SRR1422190	@dbgap@:reads/SRP012006/SRS639941/SRX608499/SRR1422190/SRR1422190.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNNR-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNNR-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNNT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNT-01A-01D	DNA	EFO	SRS639891		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNNT-01A-01D A41315 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41315	SRX608436	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJNNT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAJNNT-01A-01D A41315 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41315_1_lane_dupsFlagged.bam	SRR1422234	@dbgap@:reads/SRP012006/SRS639891/SRX608436/SRR1422234/SRR1422234.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNNT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNNT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNNU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNU-01A-01D	DNA	EFO	SRS625085		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNNU-01A-01D A33708 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	297	A33708	SRX561191	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNNU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNNU-01A-01D A33708 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33708_1_lane_dupsFlagged.bam	SRR1315566	@dbgap@:reads/SRP012006/SRS625085/SRX561191/SRR1315566/SRR1315566.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNNU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNNU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNNV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNNV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNV-01A-02D	DNA	EFO	SRS654037		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNNV-01A-02D A44636 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44636	SRX645990	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNNV-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAJNNV-01A-02D A44636 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44636_1_lane_dupsFlagged.bam	SRR1506796	@dbgap@:reads/SRP012006/SRS654037/SRX645990/SRR1506796/SRR1506796.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNNV-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNNV-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNNY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNNY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNY-01A-01D	DNA	EFO	SRS625160		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNNY-01A-01D A33836 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	281	A33836	SRX561267	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNNY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNNY-01A-01D A33836 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33836_1_lane_dupsFlagged.bam	SRR1315676	@dbgap@:reads/SRP012006/SRS625160/SRX561267/SRR1315676/SRR1315676.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNNY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNNY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNPI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNPI-01A-01D	DNA	EFO	SRS639879		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNPI-01A-01D A41316 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41316	SRX608420	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJNPI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAJNPI-01A-01D A41316 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41316_1_lane_dupsFlagged.bam	SRR1422152	@dbgap@:reads/SRP012006/SRS639879/SRX608420/SRR1422152/SRR1422152.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNPI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNPI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNPW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNPW-01A-01D	DNA	EFO	SRS625062		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNPW-01A-01D A33709 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A33709	SRX561168	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNPW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNPW-01A-01D A33709 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33709_1_lane_dupsFlagged.bam	SRR1315567	@dbgap@:reads/SRP012006/SRS625062/SRX561168/SRR1315567/SRR1315567.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNPW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNPW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNPX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNPX-01A-02D	DNA	EFO	SRS641149		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNPX-01A-02D A44637 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44637	SRX610081	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNPX-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNPX-01A-02D A44637 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44637_1_lane_dupsFlagged.bam	SRR1424370	@dbgap@:reads/SRP012006/SRS641149/SRX610081/SRR1424370/SRR1424370.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNPX-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNPX-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNPZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNPZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNPZ-01A-01D	DNA	EFO	SRS625074		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNPZ-01A-01D A33710 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A33710	SRX561180	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNPZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNPZ-01A-01D A33710 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33710_1_lane_dupsFlagged.bam	SRR1315625	@dbgap@:reads/SRP012006/SRS625074/SRX561180/SRR1315625/SRR1315625.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNPZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNPZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNRE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRE-01A-01D	DNA	EFO	SRS625056		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNRE-01A-01D A33711 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	314	A33711	SRX561161	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNRE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNRE-01A-01D A33711 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33711_1_lane_dupsFlagged.bam	SRR1315603	@dbgap@:reads/SRP012006/SRS625056/SRX561161/SRR1315603/SRR1315603.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNRE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNRE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRH-01A-01D	DNA	EFO	SRS160366		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNRH-01A-01D A41377 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41377	SRX608447	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJNRH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-50-PAJNRH-01A-01D A41377 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41377_1_lane_dupsFlagged.bam	SRR1422232	@dbgap@:reads/SRP012006/SRS160366/SRX608447/SRR1422232/SRR1422232.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNRH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNRH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNRK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRK-01A-01D	DNA	EFO	SRS625021		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNRK-01A-01D A33712 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	314	A33712	SRX561127	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNRK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNRK-01A-01D A33712 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33712_1_lane_dupsFlagged.bam	SRR1315558	@dbgap@:reads/SRP012006/SRS625021/SRX561127/SRR1315558/SRR1315558.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNRK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNRK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNRL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRL-01A-02D	DNA	EFO	SRS625036		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNRL-01A-02D A33713 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	287	A33713	SRX561142	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNRL-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNRL-01A-02D A33713 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33713_1_lane_dupsFlagged.bam	SRR1315557	@dbgap@:reads/SRP012006/SRS625036/SRX561142/SRR1315557/SRR1315557.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNRL-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNRL-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNRW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRW-01A-02D	DNA	EFO	SRS641171		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNRW-01A-02D A44638 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44638	SRX610108	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNRW-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNRW-01A-02D A44638 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44638_1_lane_dupsFlagged.bam	SRR1424383	@dbgap@:reads/SRP012006/SRS641171/SRX610108/SRR1424383/SRR1424383.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNRW-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNRW-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNSB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSB-01A-01D	DNA	EFO	SRS639904		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNSB-01A-01D A41317 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41317	SRX608453	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJNSB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAJNSB-01A-01D A41317 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41317_1_lane_dupsFlagged.bam	SRR1422150	@dbgap@:reads/SRP012006/SRS639904/SRX608453/SRR1422150/SRR1422150.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNSB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNSB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNSF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNSF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSF-01A-01D	DNA	EFO	SRS639902		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNSF-01A-01D A41318 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41318	SRX608449	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNSF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAJNSF-01A-01D A41318 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41318_1_lane_dupsFlagged.bam	SRR1422211	@dbgap@:reads/SRP012006/SRS639902/SRX608449/SRR1422211/SRR1422211.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNSF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNSF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNSI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSI-01A-01D	DNA	EFO	SRS625179		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNSI-01A-01D A33837 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	292	A33837	SRX561285	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNSI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNSI-01A-01D A33837 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33837_1_lane_dupsFlagged.bam	SRR1315636	@dbgap@:reads/SRP012006/SRS625179/SRX561285/SRR1315636/SRR1315636.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNSI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNSI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNSK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNSK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSK-01A-01D	DNA	EFO	SRS625064		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNSK-01A-01D A33714 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	287	A33714	SRX561170	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNSK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNSK-01A-01D A33714 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33714_1_lane_dupsFlagged.bam	SRR1315619	@dbgap@:reads/SRP012006/SRS625064/SRX561170/SRR1315619/SRR1315619.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNSK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNSK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNSL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSL-01A-01D	DNA	EFO	SRS301287		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNSL-01A-01D A44745 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44745	SRX610137	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNSL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNSL-01A-01D A44745 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44745_1_lane_dupsFlagged.bam	SRR1424397	@dbgap@:reads/SRP012006/SRS301287/SRX610137/SRR1424397/SRR1424397.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNSL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNSL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNSV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNSV-01A-01D	DNA	EFO	SRS625035		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNSV-01A-01D A33715 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	297	A33715	SRX561141	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNSV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNSV-01A-01D A33715 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33715_1_lane_dupsFlagged.bam	SRR1315569	@dbgap@:reads/SRP012006/SRS625035/SRX561141/SRR1315569/SRR1315569.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNSV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNSV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-01A-02D	DNA	EFO	SRS625081		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNTJ-01A-02D A33716 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	297	A33716	SRX561187	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNTJ-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNTJ-01A-02D A33716 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33716_1_lane_dupsFlagged.bam	SRR1315591	@dbgap@:reads/SRP012006/SRS625081/SRX561187/SRR1315591/SRR1315591.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNTJ-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNTJ-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-02A-01D	DNA	EFO	SRS160369		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNTJ-02A-01D A44752 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44752	SRX610152	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNTJ-02A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNTJ-02A-01D A44752 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44752_1_lane_dupsFlagged.bam	SRR1424339	@dbgap@:reads/SRP012006/SRS160369/SRX610152/SRR1424339/SRR1424339.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNTJ-02A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNTJ-02A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNTM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNTM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTM-01A-01D	DNA	EFO	SRS625132		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNTM-01A-01D A33838 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	292	A33838	SRX561238	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNTM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNTM-01A-01D A33838 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33838_1_lane_dupsFlagged.bam	SRR1315683	@dbgap@:reads/SRP012006/SRS625132/SRX561238/SRR1315683/SRR1315683.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNTM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNTM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNUJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNUJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUJ-01A-01D	DNA	EFO	SRS639916		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNUJ-01A-01D A41319 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41319	SRX608466	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNUJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-50-PAJNUJ-01A-01D A41319 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41319_1_lane_dupsFlagged.bam	SRR1422168	@dbgap@:reads/SRP012006/SRS639916/SRX608466/SRR1422168/SRR1422168.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNUJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNUJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUP-01A-02D	DNA	EFO	SRS639928		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNUP-01A-02D A41320 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41320	SRX608483	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJNUP-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-50-PAJNUP-01A-02D A41320 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41320_1_lane_dupsFlagged.bam	SRR1422191	@dbgap@:reads/SRP012006/SRS639928/SRX608483/SRR1422191/SRR1422191.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNUP-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNUP-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNUS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUS-01A-01D	DNA	EFO	SRS190165		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNUS-01A-01D A44545 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A44545	SRX645961	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNUS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-50-PAJNUS-01A-01D A44545 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44545_1_lane_dupsFlagged.bam	SRR1506854	@dbgap@:reads/SRP012006/SRS190165/SRX645961/SRR1506854/SRR1506854.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNUS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNUS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNUT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNUT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUT-01A-01D	DNA	EFO	SRS639876		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNUT-01A-01D A41321 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41321	SRX608417	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNUT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-50-PAJNUT-01A-01D A41321 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41321_1_lane_dupsFlagged.bam	SRR1422235	@dbgap@:reads/SRP012006/SRS639876/SRX608417/SRR1422235/SRR1422235.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNUT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNUT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNUX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNUX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUX-01A-01D	DNA	EFO	SRS625030		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNUX-01A-01D A33717 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A33717	SRX561136	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNUX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNUX-01A-01D A33717 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33717_1_lane_dupsFlagged.bam	SRR1315609	@dbgap@:reads/SRP012006/SRS625030/SRX561136/SRR1315609/SRR1315609.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNUX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNUX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNVA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNVA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVA-01A-02D	DNA	EFO	SRS641196		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNVA-01A-02D A44639 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44639	SRX610141	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNVA-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNVA-01A-02D A44639 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44639_1_lane_dupsFlagged.bam	SRR1424329	@dbgap@:reads/SRP012006/SRS641196/SRX610141/SRR1424329/SRR1424329.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNVA-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNVA-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNVB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVB-01A-01D	DNA	EFO	SRS625256		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNVB-01A-01D A41156 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41156	SRX561626	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNVB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNVB-01A-01D A41156 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41156_1_lane_dupsFlagged.bam	SRR1506731	@dbgap@:reads/SRP012006/SRS625256/SRX561626/SRR1506731/SRR1506731.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNVB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNVB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVE-01A-02D	DNA	EFO	SRS639920		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNVE-01A-02D A41322 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41322	SRX608473	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJNVE-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-50-PAJNVE-01A-02D A41322 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41322_1_lane_dupsFlagged.bam	SRR1422218	@dbgap@:reads/SRP012006/SRS639920/SRX608473/SRR1422218/SRR1422218.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNVE-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNVE-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNVF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVF-01A-02D	DNA	EFO	SRS641125		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNVF-01A-02D A44640 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44640	SRX610045	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNVF-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNVF-01A-02D A44640 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44640_1_lane_dupsFlagged.bam	SRR1424369	@dbgap@:reads/SRP012006/SRS641125/SRX610045/SRR1424369/SRR1424369.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNVF-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNVF-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNVL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVL-01A-01D	DNA	EFO	SRS625247		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNVL-01A-01D A41157 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41157	SRX561617	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNVL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNVL-01A-01D A41157 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41157_1_lane_dupsFlagged.bam	SRR1506764	@dbgap@:reads/SRP012006/SRS625247/SRX561617/SRR1506764/SRR1506764.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNVL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNVL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNVW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVW-01A-01D	DNA	EFO	SRS625277		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNVW-01A-01D A41158 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41158	SRX561647	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNVW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNVW-01A-01D A41158 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41158_1_lane_dupsFlagged.bam	SRR1506691	@dbgap@:reads/SRP012006/SRS625277/SRX561647/SRR1506691/SRR1506691.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNVW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNVW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVX-01A-02D	DNA	EFO	SRS639882		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNVX-01A-02D A41323 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41323	SRX608424	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJNVX-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAJNVX-01A-02D A41323 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41323_1_lane_dupsFlagged.bam	SRR1422198	@dbgap@:reads/SRP012006/SRS639882/SRX608424/SRR1422198/SRR1422198.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNVX-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNVX-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNWA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNWA-01A-02D	DNA	EFO	SRS641132		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNWA-01A-02D A44641 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44641	SRX610056	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNWA-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNWA-01A-02D A44641 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44641_1_lane_dupsFlagged.bam	SRR1424334	@dbgap@:reads/SRP012006/SRS641132/SRX610056/SRR1424334/SRR1424334.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNWA-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNWA-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNWD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNWD-01A-01D	DNA	EFO	SRS653234		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNWD-01A-01D A41159 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41159	SRX645049	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNWD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNWD-01A-01D A41159 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41159_1_lane_dupsFlagged.bam	SRR1506758	@dbgap@:reads/SRP012006/SRS653234/SRX645049/SRR1506758/SRR1506758.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNWD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNWD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNWE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNWE-01A-01D	DNA	EFO	SRS653226		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNWE-01A-01D A41160 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41160	SRX645041	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNWE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNWE-01A-01D A41160 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41160_1_lane_dupsFlagged.bam	SRR1506689	@dbgap@:reads/SRP012006/SRS653226/SRX645041/SRR1506689/SRR1506689.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNWE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNWE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNWH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNWH-01A-01D	DNA	EFO	SRS625242		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNWH-01A-01D A41161 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41161	SRX561612	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNWH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNWH-01A-01D A41161 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41161_1_lane_dupsFlagged.bam	SRR1506704	@dbgap@:reads/SRP012006/SRS625242/SRX561612/SRR1506704/SRR1506704.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNWH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNWH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNWK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNWK-01A-02D	DNA	EFO	SRS641199		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNWK-01A-02D A44642 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44642	SRX610150	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNWK-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNWK-01A-02D A44642 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44642_1_lane_dupsFlagged.bam	SRR1424340	@dbgap@:reads/SRP012006/SRS641199/SRX610150/SRR1424340/SRR1424340.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNWK-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNWK-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNWR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNWR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNWR-01A-02D	DNA	EFO	SRS641146		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNWR-01A-02D A44643 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44643	SRX610076	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNWR-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNWR-01A-02D A44643 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44643_1_lane_dupsFlagged.bam	SRR1424355	@dbgap@:reads/SRP012006/SRS641146/SRX610076/SRR1424355/SRR1424355.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNWR-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNWR-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNWU-01A-01D	DNA	EFO	SRS639901		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNWU-01A-01D A41324 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41324	SRX608448	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJNWU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAJNWU-01A-01D A41324 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41324_1_lane_dupsFlagged.bam	SRR1422194	@dbgap@:reads/SRP012006/SRS639901/SRX608448/SRR1422194/SRR1422194.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNWU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNWU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNWX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNWX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNWX-01A-01D	DNA	EFO	SRS625262		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNWX-01A-01D A41162 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41162	SRX561632	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNWX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNWX-01A-01D A41162 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41162_1_lane_dupsFlagged.bam	SRR1506720	@dbgap@:reads/SRP012006/SRS625262/SRX561632/SRR1506720/SRR1506720.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNWX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNWX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNWZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNWZ-01A-01D	DNA	EFO	SRS625269		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNWZ-01A-01D A41163 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41163	SRX561639	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNWZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNWZ-01A-01D A41163 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41163_1_lane_dupsFlagged.bam	SRR1506707	@dbgap@:reads/SRP012006/SRS625269/SRX561639/SRR1506707/SRR1506707.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNWZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNWZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNXB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNXB-01A-02D	DNA	EFO	SRS641161		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNXB-01A-02D A44644 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44644	SRX610094	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNXB-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNXB-01A-02D A44644 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44644_1_lane_dupsFlagged.bam	SRR1424350	@dbgap@:reads/SRP012006/SRS641161/SRX610094/SRR1424350/SRR1424350.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNXB-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNXB-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNXC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNXC-01A-01D	DNA	EFO	SRS639871		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNXC-01A-01D A41325 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41325	SRX608411	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJNXC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAJNXC-01A-01D A41325 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41325_1_lane_dupsFlagged.bam	SRR1422177	@dbgap@:reads/SRP012006/SRS639871/SRX608411/SRR1422177/SRR1422177.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNXC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNXC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNXG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNXG-01A-01D	DNA	EFO	SRS625112		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNXG-01A-01D A33839 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	291	A33839	SRX561219	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNXG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNXG-01A-01D A33839 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33839_1_lane_dupsFlagged.bam	SRR1315674	@dbgap@:reads/SRP012006/SRS625112/SRX561219/SRR1315674/SRR1315674.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNXG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNXG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNXI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNXI-01A-01D	DNA	EFO	SRS625283		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNXI-01A-01D A41164 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41164	SRX561653	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNXI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNXI-01A-01D A41164 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41164_1_lane_dupsFlagged.bam	SRR1506735	@dbgap@:reads/SRP012006/SRS625283/SRX561653/SRR1506735/SRR1506735.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNXI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNXI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNXR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNXR-01A-01D	DNA	EFO	SRS625294		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNXR-01A-01D A41165 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41165	SRX561664	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNXR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJNXR-01A-01D A41165 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41165_1_lane_dupsFlagged.bam	SRR1506715	@dbgap@:reads/SRP012006/SRS625294/SRX561664/SRR1506715/SRR1506715.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNXR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNXR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNXS-01A-01D	DNA	EFO	SRS639922		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNXS-01A-01D A41326 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41326	SRX608475	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJNXS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAJNXS-01A-01D A41326 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41326_1_lane_dupsFlagged.bam	SRR1422200	@dbgap@:reads/SRP012006/SRS639922/SRX608475/SRR1422200/SRR1422200.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNXS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNXS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNXT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNXT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNXT-01A-03D	DNA	EFO	SRS639892		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNXT-01A-03D A41327 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41327	SRX608437	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJNXT-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-50-PAJNXT-01A-03D A41327 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41327_1_lane_dupsFlagged.bam	SRR1422175	@dbgap@:reads/SRP012006/SRS639892/SRX608437/SRR1422175/SRR1422175.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNXT-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNXT-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNYM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYM-01A-01D	DNA	EFO	SRS625150		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNYM-01A-01D A33840 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	291	A33840	SRX561257	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNYM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNYM-01A-01D A33840 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33840_1_lane_dupsFlagged.bam	SRR1315715	@dbgap@:reads/SRP012006/SRS625150/SRX561257/SRR1315715/SRR1315715.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNYM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNYM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNYT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYT-01A-03D	DNA	EFO	SRS625180		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNYT-01A-03D A33841 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	301	A33841	SRX561286	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNYT-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNYT-01A-03D A33841 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33841_1_lane_dupsFlagged.bam	SRR1315719	@dbgap@:reads/SRP012006/SRS625180/SRX561286/SRR1315719/SRR1315719.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNYT-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNYT-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNYX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNYX-01A-01D	DNA	EFO	SRS639935		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNYX-01A-01D A41328 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41328	SRX608492	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJNYX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-50-PAJNYX-01A-01D A41328 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41328_1_lane_dupsFlagged.bam	SRR1422182	@dbgap@:reads/SRP012006/SRS639935/SRX608492/SRR1422182/SRR1422182.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNYX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNYX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZI-01A-01D	DNA	EFO	SRS190169		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZI-01A-01D A44737 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44737	SRX610059	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJNZI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNZI-01A-01D A44737 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44737_1_lane_dupsFlagged.bam	SRR1424428	@dbgap@:reads/SRP012006/SRS190169/SRX610059/SRR1424428/SRR1424428.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNZI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNZI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZK-01A-01D	DNA	EFO	SRS301289		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZK-01A-01D A44746 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44746	SRX610132	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNZK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNZK-01A-01D A44746 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44746_1_lane_dupsFlagged.bam	SRR1424416	@dbgap@:reads/SRP012006/SRS301289/SRX610132/SRR1424416/SRR1424416.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNZK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNZK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNZS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZS-01A-01D	DNA	EFO	SRS190171		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZS-01A-01D A44733 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44733	SRX610069	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJNZS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJNZS-01A-01D A44733 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44733_1_lane_dupsFlagged.bam	SRR1424360	@dbgap@:reads/SRP012006/SRS190171/SRX610069/SRR1424360/SRR1424360.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNZS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNZS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZU-01A-01D	DNA	EFO	SRS301291		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZU-01A-01D A41380 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41380	SRX608489	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNZU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAJNZU-01A-01D A41380 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41380_1_lane_dupsFlagged.bam	SRR1422179	@dbgap@:reads/SRP012006/SRS301291/SRX608489/SRR1422179/SRR1422179.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNZU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNZU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNZY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZY-01A-01D	DNA	EFO	SRS639878		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZY-01A-01D A41329 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41329	SRX608418	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNZY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-50-PAJNZY-01A-01D A41329 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41329_1_lane_dupsFlagged.bam	SRR1422178	@dbgap@:reads/SRP012006/SRS639878/SRX608418/SRR1422178/SRR1422178.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNZY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNZY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJNZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJNZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNZZ-01A-01D	DNA	EFO	SRS625093		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJNZZ-01A-01D A33718 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A33718	SRX561198	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJNZZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJNZZ-01A-01D A33718 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33718_1_lane_dupsFlagged.bam	SRR1315587	@dbgap@:reads/SRP012006/SRS625093/SRX561198/SRR1315587/SRR1315587.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJNZZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJNZZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPAD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAD-01A-01D	DNA	EFO	SRS625070		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPAD-01A-01D A33719 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	314	A33719	SRX561177	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPAD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJPAD-01A-01D A33719 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33719_1_lane_dupsFlagged.bam	SRR1315554	@dbgap@:reads/SRP012006/SRS625070/SRX561177/SRR1315554/SRR1315554.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPAD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPAD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPAG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPAG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAG-01A-01D	DNA	EFO	SRS625090		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPAG-01A-01D A33720 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	314	A33720	SRX561196	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPAG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJPAG-01A-01D A33720 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33720_1_lane_dupsFlagged.bam	SRR1315628	@dbgap@:reads/SRP012006/SRS625090/SRX561196/SRR1315628/SRR1315628.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPAG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPAG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPAH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAH-01A-02D	DNA	EFO	SRS641182		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPAH-01A-02D A44645 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44645	SRX610121	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPAH-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJPAH-01A-02D A44645 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44645_1_lane_dupsFlagged.bam	SRR1424336	@dbgap@:reads/SRP012006/SRS641182/SRX610121/SRR1424336/SRR1424336.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPAH-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPAH-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01D	DNA	EFO	SRS190173		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPAR-01A-01D A41378 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41378	SRX608477	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJPAR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-50-PAJPAR-01A-01D A41378 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41378_1_lane_dupsFlagged.bam	SRR1422206	@dbgap@:reads/SRP012006/SRS190173/SRX608477/SRR1422206/SRR1422206.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPAR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPAR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPAU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAU-01A-02D	DNA	EFO	SRS625034		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPAU-01A-02D A33721 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	287	A33721	SRX561140	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPAU-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJPAU-01A-02D A33721 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33721_1_lane_dupsFlagged.bam	SRR1315600	@dbgap@:reads/SRP012006/SRS625034/SRX561140/SRR1315600/SRR1315600.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPAU-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPAU-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPAX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPAX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAX-01A-01D	DNA	EFO	SRS625099		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPAX-01A-01D A33842 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	301	A33842	SRX561205	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPAX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJPAX-01A-01D A33842 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33842_1_lane_dupsFlagged.bam	SRR1315684	@dbgap@:reads/SRP012006/SRS625099/SRX561205/SRR1315684/SRR1315684.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPAX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPAX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPBD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPBD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPBD-01A-01D	DNA	EFO	SRS625088		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPBD-01A-01D A33722 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	287	A33722	SRX561194	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPBD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJPBD-01A-01D A33722 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33722_1_lane_dupsFlagged.bam	SRR1315623	@dbgap@:reads/SRP012006/SRS625088/SRX561194/SRR1315623/SRR1315623.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPBD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPBD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPBG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPBG-01A-02D	DNA	EFO	SRS641180		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPBG-01A-02D A44646 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44646	SRX610119	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPBG-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJPBG-01A-02D A44646 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44646_1_lane_dupsFlagged.bam	SRR1424349	@dbgap@:reads/SRP012006/SRS641180/SRX610119/SRR1424349/SRR1424349.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPBG-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPBG-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPBR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPBR-01A-01D	DNA	EFO	SRS639925		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPBR-01A-01D A41330 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41330	SRX608480	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJPBR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-50-PAJPBR-01A-01D A41330 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41330_1_lane_dupsFlagged.bam	SRR1422203	@dbgap@:reads/SRP012006/SRS639925/SRX608480/SRR1422203/SRR1422203.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPBR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPBR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPBZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPBZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPBZ-01A-01D	DNA	EFO	SRS639914		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPBZ-01A-01D A41331 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41331	SRX608465	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJPBZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAJPBZ-01A-01D A41331 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41331_1_lane_dupsFlagged.bam	SRR1422172	@dbgap@:reads/SRP012006/SRS639914/SRX608465/SRR1422172/SRR1422172.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPBZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPBZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPCF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPCF-01A-02D	DNA	EFO	SRS625183		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPCF-01A-02D A33843 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	281	A33843	SRX561289	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPCF-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJPCF-01A-02D A33843 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33843_1_lane_dupsFlagged.bam	SRR1315690	@dbgap@:reads/SRP012006/SRS625183/SRX561289/SRR1315690/SRR1315690.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPCF-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPCF-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPCM-01A-01D	DNA	EFO	SRS190175		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPCM-01A-01D A41379 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41379	SRX608430	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJPCM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAJPCM-01A-01D A41379 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41379_1_lane_dupsFlagged.bam	SRR1422196	@dbgap@:reads/SRP012006/SRS190175/SRX608430/SRR1422196/SRR1422196.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPCM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPCM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPCN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPCN-01A-02D	DNA	EFO	SRS641162		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPCN-01A-02D A44647 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44647	SRX610095	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPCN-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJPCN-01A-02D A44647 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44647_1_lane_dupsFlagged.bam	SRR1424374	@dbgap@:reads/SRP012006/SRS641162/SRX610095/SRR1424374/SRR1424374.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPCN-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPCN-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPCV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPCV-01A-01D	DNA	EFO	SRS625091		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPCV-01A-01D A33723 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	297	A33723	SRX561197	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPCV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJPCV-01A-01D A33723 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33723_1_lane_dupsFlagged.bam	SRR1315552	@dbgap@:reads/SRP012006/SRS625091/SRX561197/SRR1315552/SRR1315552.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPCV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPCV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPCX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPCX-01A-02D	DNA	EFO	SRS641173		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPCX-01A-02D A44648 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44648	SRX610111	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPCX-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJPCX-01A-02D A44648 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44648_1_lane_dupsFlagged.bam	SRR1424376	@dbgap@:reads/SRP012006/SRS641173/SRX610111/SRR1424376/SRR1424376.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPCX-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPCX-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-01A-02D	DNA	EFO	SRS625023		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPDC-01A-02D A33724 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	297	A33724	SRX561129	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPDC-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJPDC-01A-02D A33724 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33724_1_lane_dupsFlagged.bam	SRR1315580	@dbgap@:reads/SRP012006/SRS625023/SRX561129/SRR1315580/SRR1315580.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPDC-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPDC-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-02A-01D	DNA	EFO	SRS160378		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPDC-02A-01D A44753 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44753	SRX610148	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPDC-02A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJPDC-02A-01D A44753 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44753_1_lane_dupsFlagged.bam	SRR1424398	@dbgap@:reads/SRP012006/SRS160378/SRX610148/SRR1424398/SRR1424398.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPDC-02A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPDC-02A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPDF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDF-01A-02D	DNA	EFO	SRS641151		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPDF-01A-02D A44649 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44649	SRX610083	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPDF-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJPDF-01A-02D A44649 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44649_1_lane_dupsFlagged.bam	SRR1424326	@dbgap@:reads/SRP012006/SRS641151/SRX610083/SRR1424326/SRR1424326.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPDF-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPDF-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDN-01A-02D	DNA	EFO	SRS639926		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPDN-01A-02D A41332 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41332	SRX608481	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJPDN-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAJPDN-01A-02D A41332 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41332_1_lane_dupsFlagged.bam	SRR1422185	@dbgap@:reads/SRP012006/SRS639926/SRX608481/SRR1422185/SRR1422185.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPDN-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPDN-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPDX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPDX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDX-01A-01D	DNA	EFO	SRS625067		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPDX-01A-01D A33725 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A33725	SRX561172	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPDX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJPDX-01A-01D A33725 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33725_1_lane_dupsFlagged.bam	SRR1315572	@dbgap@:reads/SRP012006/SRS625067/SRX561172/SRR1315572/SRR1315572.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPDX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPDX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPEA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEA-01A-01D	DNA	EFO	SRS625137		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPEA-01A-01D A33844 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	281	A33844	SRX561243	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPEA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJPEA-01A-01D A33844 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33844_1_lane_dupsFlagged.bam	SRR1315712	@dbgap@:reads/SRP012006/SRS625137/SRX561243/SRR1315712/SRR1315712.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPEA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPEA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPEF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEF-01A-01D	DNA	EFO	SRS625071		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPEF-01A-01D A33726 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A33726	SRX561176	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPEF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJPEF-01A-01D A33726 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33726_1_lane_dupsFlagged.bam	SRR1315606	@dbgap@:reads/SRP012006/SRS625071/SRX561176/SRR1315606/SRR1315606.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPEF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPEF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPEJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEJ-01A-01D	DNA	EFO	SRS301293		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPEJ-01A-01D A44561 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A44561	SRX645975	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPEJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-50-PAJPEJ-01A-01D A44561 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44561_1_lane_dupsFlagged.bam	SRR1506805	@dbgap@:reads/SRP012006/SRS301293/SRX645975/SRR1506805/SRR1506805.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPEJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPEJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEP-01A-02D	DNA	EFO	SRS641137		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPEP-01A-02D A44650 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44650	SRX610064	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPEP-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJPEP-01A-02D A44650 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44650_1_lane_dupsFlagged.bam	SRR1424377	@dbgap@:reads/SRP012006/SRS641137/SRX610064/SRR1424377/SRR1424377.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPEP-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPEP-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPER-01A-02D	DNA	EFO	SRS641155		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPER-01A-02D A44651 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44651	SRX610087	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPER-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJPER-01A-02D A44651 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44651_1_lane_dupsFlagged.bam	SRR1424366	@dbgap@:reads/SRP012006/SRS641155/SRX610087/SRR1424366/SRR1424366.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPER-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPER-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPET-01A-01D	DNA	EFO	SRS625172		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPET-01A-01D A33845 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	292	A33845	SRX561279	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPET-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJPET-01A-01D A33845 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33845_1_lane_dupsFlagged.bam	SRR1315678	@dbgap@:reads/SRP012006/SRS625172/SRX561279/SRR1315678/SRR1315678.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPET-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPET-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEW-01A-02D	DNA	EFO	SRS625052		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPEW-01A-02D A33727 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	314	A33727	SRX561158	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPEW-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJPEW-01A-02D A33727 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33727_1_lane_dupsFlagged.bam	SRR1315596	@dbgap@:reads/SRP012006/SRS625052/SRX561158/SRR1315596/SRR1315596.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPEW-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPEW-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPEY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPEY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPEY-01A-01D	DNA	EFO	SRS625141		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPEY-01A-01D A33846 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	292	A33846	SRX561248	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPEY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJPEY-01A-01D A33846 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33846_1_lane_dupsFlagged.bam	SRR1315711	@dbgap@:reads/SRP012006/SRS625141/SRX561248/SRR1315711/SRR1315711.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPEY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPEY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPFC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPFC-01A-01D	DNA	EFO	SRS625043		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPFC-01A-01D A33728 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	314	A33728	SRX561149	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPFC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJPFC-01A-01D A33728 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33728_1_lane_dupsFlagged.bam	SRR1315604	@dbgap@:reads/SRP012006/SRS625043/SRX561149/SRR1315604/SRR1315604.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPFC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPFC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPFF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPFF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPFF-01A-01D	DNA	EFO	SRS639940		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPFF-01A-01D A41333 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41333	SRX608498	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJPFF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAJPFF-01A-01D A41333 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41333_1_lane_dupsFlagged.bam	SRR1422233	@dbgap@:reads/SRP012006/SRS639940/SRX608498/SRR1422233/SRR1422233.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPFF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPFF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPFJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPFJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPFJ-01A-01D	DNA	EFO	SRS625033		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPFJ-01A-01D A33729 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	287	A33729	SRX561139	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPFJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJPFJ-01A-01D A33729 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33729_1_lane_dupsFlagged.bam	SRR1315551	@dbgap@:reads/SRP012006/SRS625033/SRX561139/SRR1315551/SRR1315551.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPFJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPFJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPFK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPFK-01A-01D	DNA	EFO	SRS625077		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPFK-01A-01D A33730 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	287	A33730	SRX561183	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPFK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJPFK-01A-01D A33730 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33730_1_lane_dupsFlagged.bam	SRR1315556	@dbgap@:reads/SRP012006/SRS625077/SRX561183/SRR1315556/SRR1315556.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPFK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPFK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPFN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPFN-01A-02D	DNA	EFO	SRS641129		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPFN-01A-02D A44652 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44652	SRX610051	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPFN-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAJPFN-01A-02D A44652 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44652_1_lane_dupsFlagged.bam	SRR1424382	@dbgap@:reads/SRP012006/SRS641129/SRX610051/SRR1424382/SRR1424382.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPFN-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPFN-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPFR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPFR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPFR-01A-02D	DNA	EFO	SRS625111		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPFR-01A-02D A33847 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	291	A33847	SRX561217	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPFR-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJPFR-01A-02D A33847 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33847_1_lane_dupsFlagged.bam	SRR1315659	@dbgap@:reads/SRP012006/SRS625111/SRX561217/SRR1315659/SRR1315659.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPFR-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPFR-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPFY-01A-01D	DNA	EFO	SRS625154		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPFY-01A-01D A33848 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	291	A33848	SRX561260	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPFY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJPFY-01A-01D A33848 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33848_1_lane_dupsFlagged.bam	SRR1315716	@dbgap@:reads/SRP012006/SRS625154/SRX561260/SRR1315716/SRR1315716.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPFY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPFY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPGA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGA-01A-01D	DNA	EFO	SRS625245		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPGA-01A-01D A41166 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41166	SRX561615	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPGA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJPGA-01A-01D A41166 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41166_1_lane_dupsFlagged.bam	SRR1506752	@dbgap@:reads/SRP012006/SRS625245/SRX561615/SRR1506752/SRR1506752.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPGA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPGA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPGF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGF-01A-01D	DNA	EFO	SRS653239		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPGF-01A-01D A41167 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41167	SRX645054	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPGF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJPGF-01A-01D A41167 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41167_1_lane_dupsFlagged.bam	SRR1506726	@dbgap@:reads/SRP012006/SRS653239/SRX645054/SRR1506726/SRR1506726.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPGF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPGF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGM-01A-01D	DNA	EFO	SRS625146		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPGM-01A-01D A33849 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	301	A33849	SRX561252	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPGM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJPGM-01A-01D A33849 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33849_1_lane_dupsFlagged.bam	SRR1315631	@dbgap@:reads/SRP012006/SRS625146/SRX561252/SRR1315631/SRR1315631.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPGM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPGM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPGP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGP-01A-01D	DNA	EFO	SRS625127		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPGP-01A-01D A33850 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	301	A33850	SRX561233	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPGP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJPGP-01A-01D A33850 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33850_1_lane_dupsFlagged.bam	SRR1315665	@dbgap@:reads/SRP012006/SRS625127/SRX561233/SRR1315665/SRR1315665.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPGP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPGP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPGU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGU-01A-01D	DNA	EFO	SRS653225		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPGU-01A-01D A41168 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41168	SRX645040	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPGU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAJPGU-01A-01D A41168 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41168_1_lane_dupsFlagged.bam	SRR1506743	@dbgap@:reads/SRP012006/SRS653225/SRX645040/SRR1506743/SRR1506743.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPGU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPGU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPGY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPGY-01A-01D	DNA	EFO	SRS287616		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPGY-01A-01D A44546 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A44546	SRX646024	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPGY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-50-PAJPGY-01A-01D A44546 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44546_1_lane_dupsFlagged.bam	SRR1506794	@dbgap@:reads/SRP012006/SRS287616/SRX646024/SRR1506794/SRR1506794.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPGY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPGY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHA-01A-02D	DNA	EFO	SRS625261		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPHA-01A-02D A41169 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41169	SRX561631	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPHA-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJPHA-01A-02D A41169 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41169_1_lane_dupsFlagged.bam	SRR1506751	@dbgap@:reads/SRP012006/SRS625261/SRX561631/SRR1506751/SRR1506751.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPHA-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPHA-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPHG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPHG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHG-01A-01D	DNA	EFO	SRS639919		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPHG-01A-01D A41334 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41334	SRX608472	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAJPHG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAJPHG-01A-01D A41334 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41334_1_lane_dupsFlagged.bam	SRR1422197	@dbgap@:reads/SRP012006/SRS639919/SRX608472/SRR1422197/SRR1422197.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPHG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPHG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAJPHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAJPHH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPHH-01A-01D	DNA	EFO	SRS625045		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAJPHH-01A-01D A33731 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	297	A33731	SRX561151	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAJPHH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAJPHH-01A-01D A33731 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33731_1_lane_dupsFlagged.bam	SRR1315618	@dbgap@:reads/SRP012006/SRS625045/SRX561151/SRR1315618/SRR1315618.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAJPHH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAJPHH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKAPI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKAPI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKAPI-01A-01D	DNA	EFO	SRS625299		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKAPI-01A-01D A41198 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41198	SRX561669	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKAPI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAKAPI-01A-01D A41198 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41198_1_lane_dupsFlagged.bam	SRR1506750	@dbgap@:reads/SRP012006/SRS625299/SRX561669/SRR1506750/SRR1506750.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKAPI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKAPI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKAPZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKAPZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKAPZ-01A-01D	DNA	EFO	SRS625288		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKAPZ-01A-01D A41205 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41205	SRX561658	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKAPZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAKAPZ-01A-01D A41205 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41205_1_lane_dupsFlagged.bam	SRR1506708	@dbgap@:reads/SRP012006/SRS625288/SRX561658/SRR1506708/SRR1506708.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKAPZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKAPZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKDUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKDUM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKDUM-01A-02D	DNA	EFO	SRS641190		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKDUM-01A-02D A44653 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44653	SRX610134	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKDUM-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKDUM-01A-02D A44653 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44653_1_lane_dupsFlagged.bam	SRR1424399	@dbgap@:reads/SRP012006/SRS641190/SRX610134/SRR1424399/SRR1424399.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKDUM-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKDUM-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKECR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKECR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKECR-01A-02D	DNA	EFO	SRS639907		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKECR-01A-02D A41335 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41335	SRX608457	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKECR-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-50-PAKECR-01A-02D A41335 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41335_1_lane_dupsFlagged.bam	SRR1422212	@dbgap@:reads/SRP012006/SRS639907/SRX608457/SRR1422212/SRR1422212.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKECR-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKECR-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKEMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKEMV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKEMV-01A-01D	DNA	EFO	SRS654044		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKEMV-01A-01D A44578 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A44578	SRX646000	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKEMV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-50-PAKEMV-01A-01D A44578 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44578_1_lane_dupsFlagged.bam	SRR1506780	@dbgap@:reads/SRP012006/SRS654044/SRX646000/SRR1506780/SRR1506780.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKEMV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKEMV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFME-01A-01D	DNA	EFO	SRS190179		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKFME-01A-01D A44547 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44547	SRX645978	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKFME-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAKFME-01A-01D A44547 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44547_1_lane_dupsFlagged.bam	SRR1506856	@dbgap@:reads/SRP012006/SRS190179/SRX645978/SRR1506856/SRR1506856.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKFME-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKFME-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKFTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKFTB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFTB-01A-01D	DNA	EFO	SRS625244		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKFTB-01A-01D A41171 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41171	SRX561614	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKFTB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKFTB-01A-01D A41171 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41171_1_lane_dupsFlagged.bam	SRR1506703	@dbgap@:reads/SRP012006/SRS625244/SRX561614/SRR1506703/SRR1506703.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKFTB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKFTB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKFYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFYV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFYV-01A-02D	DNA	EFO	SRS639911		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKFYV-01A-02D A41336 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41336	SRX608461	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKFYV-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-50-PAKFYV-01A-02D A41336 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41336_1_lane_dupsFlagged.bam	SRR1422214	@dbgap@:reads/SRP012006/SRS639911/SRX608461/SRR1422214/SRR1422214.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKFYV-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKFYV-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKFZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKFZA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFZA-01A-02D	DNA	EFO	SRS641124		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKFZA-01A-02D A44654 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44654	SRX610044	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKFZA-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKFZA-01A-02D A44654 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44654_1_lane_dupsFlagged.bam	SRR1424362	@dbgap@:reads/SRP012006/SRS641124/SRX610044/SRR1424362/SRR1424362.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKFZA-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKFZA-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKGDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKGDL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGDL-01A-01D	DNA	EFO	SRS625282		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGDL-01A-01D A41172 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41172	SRX561652	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKGDL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKGDL-01A-01D A41172 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41172_1_lane_dupsFlagged.bam	SRR1506766	@dbgap@:reads/SRP012006/SRS625282/SRX561652/SRR1506766/SRR1506766.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKGDL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKGDL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKGED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGED-01A-02D	DNA	EFO	SRS639915		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGED-01A-02D A41337 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41337	SRX608464	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKGED-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-50-PAKGED-01A-02D A41337 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41337_1_lane_dupsFlagged.bam	SRR1422155	@dbgap@:reads/SRP012006/SRS639915/SRX608464/SRR1422155/SRR1422155.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKGED-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKGED-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKGJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKGJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGJK-01A-02D	DNA	EFO	SRS641176		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGJK-01A-02D A44655 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44655	SRX610115	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKGJK-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKGJK-01A-02D A44655 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44655_1_lane_dupsFlagged.bam	SRR1424347	@dbgap@:reads/SRP012006/SRS641176/SRX610115/SRR1424347/SRR1424347.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKGJK-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKGJK-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKGMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKGMM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGMM-01A-01D	DNA	EFO	SRS639912		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGMM-01A-01D A41338 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41338	SRX608462	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKGMM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-50-PAKGMM-01A-01D A41338 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41338_1_lane_dupsFlagged.bam	SRR1422220	@dbgap@:reads/SRP012006/SRS639912/SRX608462/SRR1422220/SRR1422220.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKGMM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKGMM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKGMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGMU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGMU-01A-02D	DNA	EFO	SRS639900		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGMU-01A-02D A41339 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41339	SRX608446	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKGMU-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAKGMU-01A-02D A41339 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41339_1_lane_dupsFlagged.bam	SRR1422180	@dbgap@:reads/SRP012006/SRS639900/SRX608446/SRR1422180/SRR1422180.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKGMU-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKGMU-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKGRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKGRG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGRG-01A-01D	DNA	EFO	SRS639877		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGRG-01A-01D A41340 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41340	SRX608419	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKGRG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAKGRG-01A-01D A41340 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41340_1_lane_dupsFlagged.bam	SRR1422202	@dbgap@:reads/SRP012006/SRS639877/SRX608419/SRR1422202/SRR1422202.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKGRG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKGRG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKGUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKGUP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGUP-01A-01D	DNA	EFO	SRS639886		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGUP-01A-01D A41341 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41341	SRX608427	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKGUP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAKGUP-01A-01D A41341 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41341_1_lane_dupsFlagged.bam	SRR1422222	@dbgap@:reads/SRP012006/SRS639886/SRX608427/SRR1422222/SRR1422222.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKGUP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKGUP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKGWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKGWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGWP-01A-02D	DNA	EFO	SRS641170		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGWP-01A-02D A44656 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44656	SRX610107	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKGWP-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKGWP-01A-02D A44656 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44656_1_lane_dupsFlagged.bam	SRR1424432	@dbgap@:reads/SRP012006/SRS641170/SRX610107/SRR1424432/SRR1424432.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKGWP-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKGWP-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKGXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKGXL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGXL-01A-01D	DNA	EFO	SRS625265		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGXL-01A-01D A41173 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41173	SRX561635	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKGXL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAKGXL-01A-01D A41173 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41173_1_lane_dupsFlagged.bam	SRR1506730	@dbgap@:reads/SRP012006/SRS625265/SRX561635/SRR1506730/SRR1506730.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKGXL-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKGXL-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKGZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGZX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGZX-01A-02D	DNA	EFO	SRS625266		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGZX-01A-02D A41174 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41174	SRX561636	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKGZX-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAKGZX-01A-02D A41174 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41174_1_lane_dupsFlagged.bam	SRR1506701	@dbgap@:reads/SRP012006/SRS625266/SRX561636/SRR1506701/SRR1506701.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKGZX-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKGZX-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKGZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKGZY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGZY-01A-01D	DNA	EFO	SRS653222		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKGZY-01A-01D A41175 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41175	SRX645037	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKGZY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAKGZY-01A-01D A41175 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41175_1_lane_dupsFlagged.bam	SRR1506683	@dbgap@:reads/SRP012006/SRS653222/SRX645037/SRR1506683/SRR1506683.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKGZY-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKGZY-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKHBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKHBL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKHBL-01A-02D	DNA	EFO	SRS641189		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKHBL-01A-02D A44657 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44657	SRX610133	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKHBL-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKHBL-01A-02D A44657 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44657_1_lane_dupsFlagged.bam	SRR1424380	@dbgap@:reads/SRP012006/SRS641189/SRX610133/SRR1424380/SRR1424380.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKHBL-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKHBL-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKHFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKHFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKHFY-01A-03D	DNA	EFO	SRS641186		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKHFY-01A-03D A44715 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44715	SRX610125	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKHFY-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKHFY-01A-03D A44715 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44715_1_lane_dupsFlagged.bam	SRR1424429	@dbgap@:reads/SRP012006/SRS641186/SRX610125/SRR1424429/SRR1424429.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKHFY-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKHFY-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKHIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKHIU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKHIU-01A-01D	DNA	EFO	SRS653232		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKHIU-01A-01D A41176 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41176	SRX645047	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKHIU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAKHIU-01A-01D A41176 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41176_1_lane_dupsFlagged.bam	SRR1506729	@dbgap@:reads/SRP012006/SRS653232/SRX645047/SRR1506729/SRR1506729.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKHIU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKHIU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKHKU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKHKU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKHKU-01A-01D	DNA	EFO	SRS625298		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKHKU-01A-01D A41177 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41177	SRX561668	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKHKU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKHKU-01A-01D A41177 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41177_1_lane_dupsFlagged.bam	SRR1506768	@dbgap@:reads/SRP012006/SRS625298/SRX561668/SRR1506768/SRR1506768.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKHKU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKHKU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKHMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKHMM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKHMM-01A-01D	DNA	EFO	SRS625246		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKHMM-01A-01D A41178 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41178	SRX561616	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKHMM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKHMM-01A-01D A41178 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41178_1_lane_dupsFlagged.bam	SRR1506728	@dbgap@:reads/SRP012006/SRS625246/SRX561616/SRR1506728/SRR1506728.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKHMM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKHMM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKHNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKHNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKHNC-01A-01D	DNA	EFO	SRS625149		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKHNC-01A-01D A33851 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	281	A33851	SRX561255	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKHNC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKHNC-01A-01D A33851 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33851_1_lane_dupsFlagged.bam	SRR1315639	@dbgap@:reads/SRP012006/SRS625149/SRX561255/SRR1315639/SRR1315639.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKHNC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKHNC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKHNH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKHNH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKHNH-01A-02D	DNA	EFO	SRS641198		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKHNH-01A-02D A44658 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44658	SRX610149	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKHNH-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKHNH-01A-02D A44658 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44658_1_lane_dupsFlagged.bam	SRR1424371	@dbgap@:reads/SRP012006/SRS641198/SRX610149/SRR1424371/SRR1424371.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKHNH-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKHNH-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKHWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKHWF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKHWF-01A-01D	DNA	EFO	SRS625139		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKHWF-01A-01D A33852 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	292	A33852	SRX561245	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKHWF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKHWF-01A-01D A33852 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33852_1_lane_dupsFlagged.bam	SRR1315638	@dbgap@:reads/SRP012006/SRS625139/SRX561245/SRR1315638/SRR1315638.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKHWF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKHWF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKHWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKHWZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKHWZ-01A-01D	DNA	EFO	SRS625130		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKHWZ-01A-01D A33853 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	292	A33853	SRX561237	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKHWZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKHWZ-01A-01D A33853 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33853_1_lane_dupsFlagged.bam	SRR1315669	@dbgap@:reads/SRP012006/SRS625130/SRX561237/SRR1315669/SRR1315669.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKHWZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKHWZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKHYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKHYJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKHYJ-01A-01D	DNA	EFO	SRS625147		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKHYJ-01A-01D A33854 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	291	A33854	SRX561253	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKHYJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKHYJ-01A-01D A33854 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33854_1_lane_dupsFlagged.bam	SRR1315667	@dbgap@:reads/SRP012006/SRS625147/SRX561253/SRR1315667/SRR1315667.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKHYJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKHYJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKIDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKIDV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKIDV-01A-01D	DNA	EFO	SRS625087		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKIDV-01A-01D A33732 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	297	A33732	SRX561193	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKIDV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKIDV-01A-01D A33732 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33732_1_lane_dupsFlagged.bam	SRR1315621	@dbgap@:reads/SRP012006/SRS625087/SRX561193/SRR1315621/SRR1315621.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKIDV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKIDV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKILU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKILU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKILU-01A-01D	DNA	EFO	SRS625022		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKILU-01A-01D A33733 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A33733	SRX561128	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKILU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKILU-01A-01D A33733 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33733_1_lane_dupsFlagged.bam	SRR1315597	@dbgap@:reads/SRP012006/SRS625022/SRX561128/SRR1315597/SRR1315597.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKILU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKILU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKIRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKIRF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKIRF-01A-01D	DNA	EFO	SRS639875		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKIRF-01A-01D A41342 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41342	SRX608415	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKIRF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAKIRF-01A-01D A41342 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41342_1_lane_dupsFlagged.bam	SRR1422173	@dbgap@:reads/SRP012006/SRS639875/SRX608415/SRR1422173/SRR1422173.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKIRF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKIRF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKISF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKISF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKISF-01A-01D	DNA	EFO	SRS639897		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKISF-01A-01D A41343 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41343	SRX608443	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKISF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-50-PAKISF-01A-01D A41343 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41343_1_lane_dupsFlagged.bam	SRR1422204	@dbgap@:reads/SRP012006/SRS639897/SRX608443/SRR1422204/SRR1422204.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKISF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKISF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKIZP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKIZP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKIZP-01A-03D	DNA	EFO	SRS641194		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKIZP-01A-03D A44716 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44716	SRX610139	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKIZP-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKIZP-01A-03D A44716 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44716_1_lane_dupsFlagged.bam	SRR1424338	@dbgap@:reads/SRP012006/SRS641194/SRX610139/SRR1424338/SRR1424338.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKIZP-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKIZP-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKJGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKJGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJGM-01A-01D	DNA	EFO	SRS190187		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKJGM-01A-01D A44548 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44548	SRX646002	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKJGM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAKJGM-01A-01D A44548 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44548_1_lane_dupsFlagged.bam	SRR1506815	@dbgap@:reads/SRP012006/SRS190187/SRX646002/SRR1506815/SRR1506815.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKJGM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKJGM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKJHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKJHT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJHT-01A-02D	DNA	EFO	SRS641121		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKJHT-01A-02D A44659 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44659	SRX610041	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKJHT-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKJHT-01A-02D A44659 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44659_1_lane_dupsFlagged.bam	SRR1424403	@dbgap@:reads/SRP012006/SRS641121/SRX610041/SRR1424403/SRR1424403.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKJHT-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKJHT-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKJIS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKJIS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJIS-01A-02D	DNA	EFO	SRS641148		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKJIS-01A-02D A44660 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44660	SRX610080	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKJIS-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKJIS-01A-02D A44660 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44660_1_lane_dupsFlagged.bam	SRR1424367	@dbgap@:reads/SRP012006/SRS641148/SRX610080/SRR1424367/SRR1424367.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKJIS-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKJIS-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKJJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKJJF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJJF-01A-01D	DNA	EFO	SRS625106		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKJJF-01A-01D A33855 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	291	A33855	SRX561212	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKJJF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKJJF-01A-01D A33855 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33855_1_lane_dupsFlagged.bam	SRR1315648	@dbgap@:reads/SRP012006/SRS625106/SRX561212/SRR1315648/SRR1315648.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKJJF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKJJF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKJKT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKJKT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJKT-01A-02D	DNA	EFO	SRS641141		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKJKT-01A-02D A44661 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44661	SRX610070	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKJKT-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKJKT-01A-02D A44661 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44661_1_lane_dupsFlagged.bam	SRR1424363	@dbgap@:reads/SRP012006/SRS641141/SRX610070/SRR1424363/SRR1424363.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKJKT-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKJKT-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKJVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKJVW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJVW-01A-01D	DNA	EFO	SRS625027		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKJVW-01A-01D A33734 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A33734	SRX561132	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKJVW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKJVW-01A-01D A33734 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33734_1_lane_dupsFlagged.bam	SRR1315575	@dbgap@:reads/SRP012006/SRS625027/SRX561132/SRR1315575/SRR1315575.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKJVW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKJVW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKJXM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKJXM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJXM-01A-01D	DNA	EFO	SRS639903		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKJXM-01A-01D A41344 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41344	SRX608450	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKJXM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-50-PAKJXM-01A-01D A41344 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41344_1_lane_dupsFlagged.bam	SRR1422165	@dbgap@:reads/SRP012006/SRS639903/SRX608450/SRR1422165/SRR1422165.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKJXM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKJXM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKJZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKJZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKJZU-01A-01D	DNA	EFO	SRS625131		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKJZU-01A-01D A33856 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	291	A33856	SRX561236	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKJZU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKJZU-01A-01D A33856 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33856_1_lane_dupsFlagged.bam	SRR1315661	@dbgap@:reads/SRP012006/SRS625131/SRX561236/SRR1315661/SRR1315661.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKJZU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKJZU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKKAE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKKAE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKAE-01A-01D	DNA	EFO	SRS639939		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKKAE-01A-01D A41345 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41345	SRX608497	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKKAE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-50-PAKKAE-01A-01D A41345 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41345_1_lane_dupsFlagged.bam	SRR1422148	@dbgap@:reads/SRP012006/SRS639939/SRX608497/SRR1422148/SRR1422148.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKKAE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKKAE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKKJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKKJB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKJB-01A-03D	DNA	EFO	SRS641183		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKKJB-01A-03D A44717 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44717	SRX610122	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKKJB-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKKJB-01A-03D A44717 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44717_1_lane_dupsFlagged.bam	SRR1424328	@dbgap@:reads/SRP012006/SRS641183/SRX610122/SRR1424328/SRR1424328.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKKJB-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKKJB-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKKNS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKNS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKNS-01A-02D	DNA	EFO	SRS639890		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKKNS-01A-02D A41346 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41346	SRX608434	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKKNS-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-50-PAKKNS-01A-02D A41346 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41346_1_lane_dupsFlagged.bam	SRR1422227	@dbgap@:reads/SRP012006/SRS639890/SRX608434/SRR1422227/SRR1422227.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKKNS-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKKNS-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKKRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKKRK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKRK-01A-01D	DNA	EFO	SRS639885		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKKRK-01A-01D A41347 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41347	SRX608428	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKKRK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAKKRK-01A-01D A41347 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41347_1_lane_dupsFlagged.bam	SRR1422164	@dbgap@:reads/SRP012006/SRS639885/SRX608428/SRR1422164/SRR1422164.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKKRK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKKRK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKKSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSE-01A-02D	DNA	EFO	SRS625178		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKKSE-01A-02D A33857 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	301	A33857	SRX561274	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKKSE-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKKSE-01A-02D A33857 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33857_1_lane_dupsFlagged.bam	SRR1315658	@dbgap@:reads/SRP012006/SRS625178/SRX561274/SRR1315658/SRR1315658.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKKSE-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKKSE-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKKSG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKKSG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSG-01A-01D	DNA	EFO	SRS639918		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKKSG-01A-01D A41348 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41348	SRX608470	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKKSG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAKKSG-01A-01D A41348 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41348_1_lane_dupsFlagged.bam	SRR1422213	@dbgap@:reads/SRP012006/SRS639918/SRX608470/SRR1422213/SRR1422213.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKKSG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKKSG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKKSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKKSI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKSI-01A-01D	DNA	EFO	SRS625076		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKKSI-01A-01D A33735 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	314	A33735	SRX561182	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKKSI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKKSI-01A-01D A33735 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33735_1_lane_dupsFlagged.bam	SRR1315563	@dbgap@:reads/SRP012006/SRS625076/SRX561182/SRR1315563/SRR1315563.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKKSI-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKKSI-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKKZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKKZG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKZG-01A-01D	DNA	EFO	SRS639898		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKKZG-01A-01D A41349 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41349	SRX608444	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKKZG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAKKZG-01A-01D A41349 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41349_1_lane_dupsFlagged.bam	SRR1422167	@dbgap@:reads/SRP012006/SRS639898/SRX608444/SRR1422167/SRR1422167.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKKZG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKKZG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKLDH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKLDH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKLDH-01A-01D	DNA	EFO	SRS625095		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKLDH-01A-01D A33858 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	281	A33858	SRX561203	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKLDH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKLDH-01A-01D A33858 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33858_1_lane_dupsFlagged.bam	SRR1315680	@dbgap@:reads/SRP012006/SRS625095/SRX561203/SRR1315680/SRR1315680.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKLDH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKLDH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKLRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKLRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKLRS-01A-01D	DNA	EFO	SRS625290		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKLRS-01A-01D A41179 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41179	SRX561660	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKLRS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKLRS-01A-01D A41179 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41179_1_lane_dupsFlagged.bam	SRR1506716	@dbgap@:reads/SRP012006/SRS625290/SRX561660/SRR1506716/SRR1506716.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKLRS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKLRS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKLRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKLRW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKLRW-01A-02D	DNA	EFO	SRS625110		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKLRW-01A-02D A33859 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	281	A33859	SRX561216	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKLRW-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKLRW-01A-02D A33859 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33859_1_lane_dupsFlagged.bam	SRR1315701	@dbgap@:reads/SRP012006/SRS625110/SRX561216/SRR1315701/SRR1315701.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKLRW-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKLRW-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKLYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKLYC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKLYC-01A-01D	DNA	EFO	SRS639913		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKLYC-01A-01D A41350 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41350	SRX608463	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKLYC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAKLYC-01A-01D A41350 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41350_1_lane_dupsFlagged.bam	SRR1422166	@dbgap@:reads/SRP012006/SRS639913/SRX608463/SRR1422166/SRR1422166.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKLYC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKLYC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKLZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKLZH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKLZH-01A-01D	DNA	EFO	SRS639933		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKLZH-01A-01D A41351 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41351	SRX608491	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKLZH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-50-PAKLZH-01A-01D A41351 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41351_1_lane_dupsFlagged.bam	SRR1422223	@dbgap@:reads/SRP012006/SRS639933/SRX608491/SRR1422223/SRR1422223.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKLZH-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKLZH-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKMAV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKMAV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMAV-01A-01D	DNA	EFO	SRS625297		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKMAV-01A-01D A41180 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41180	SRX561667	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKMAV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKMAV-01A-01D A41180 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41180_1_lane_dupsFlagged.bam	SRR1506696	@dbgap@:reads/SRP012006/SRS625297/SRX561667/SRR1506696/SRR1506696.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKMAV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKMAV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKMCI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKMCI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMCI-01A-02D	DNA	EFO	SRS641135		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKMCI-01A-02D A44662 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44662	SRX610061	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKMCI-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKMCI-01A-02D A44662 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44662_1_lane_dupsFlagged.bam	SRR1424344	@dbgap@:reads/SRP012006/SRS641135/SRX610061/SRR1424344/SRR1424344.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKMCI-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKMCI-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKMDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKMDF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMDF-01A-01D	DNA	EFO	SRS654127		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKMDF-01A-01D A41213 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41213	SRX646090	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKMDF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAKMDF-01A-01D A41213 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41213_1_lane_dupsFlagged.bam	SRR1506950	@dbgap@:reads/SRP012006/SRS654127/SRX646090/SRR1506950/SRR1506950.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKMDF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKMDF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKMDX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKMDX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMDX-01A-01D	DNA	EFO	SRS625170		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKMDX-01A-01D A33860 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	292	A33860	SRX561277	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKMDX-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKMDX-01A-01D A33860 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33860_1_lane_dupsFlagged.bam	SRR1315710	@dbgap@:reads/SRP012006/SRS625170/SRX561277/SRR1315710/SRR1315710.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKMDX-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKMDX-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKMGV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKMGV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMGV-01A-01D	DNA	EFO	SRS639899		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKMGV-01A-01D A41352 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41352	SRX608445	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKMGV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-50-PAKMGV-01A-01D A41352 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41352_1_lane_dupsFlagged.bam	SRR1422183	@dbgap@:reads/SRP012006/SRS639899/SRX608445/SRR1422183/SRR1422183.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKMGV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKMGV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKMHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKMHJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMHJ-01A-01D	DNA	EFO	SRS625295		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKMHJ-01A-01D A41181 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41181	SRX561665	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKMHJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAKMHJ-01A-01D A41181 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41181_1_lane_dupsFlagged.bam	SRR1506754	@dbgap@:reads/SRP012006/SRS625295/SRX561665/SRR1506754/SRR1506754.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKMHJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKMHJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKMKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKMKW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMKW-01A-02D	DNA	EFO	SRS641150		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKMKW-01A-02D A44663 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44663	SRX610082	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKMKW-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKMKW-01A-02D A44663 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44663_1_lane_dupsFlagged.bam	SRR1424411	@dbgap@:reads/SRP012006/SRS641150/SRX610082/SRR1424411/SRR1424411.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKMKW-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKMKW-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKMLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKMLA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMLA-01A-01D	DNA	EFO	SRS625275		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKMLA-01A-01D A41182 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41182	SRX561645	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKMLA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAKMLA-01A-01D A41182 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41182_1_lane_dupsFlagged.bam	SRR1506749	@dbgap@:reads/SRP012006/SRS625275/SRX561645/SRR1506749/SRR1506749.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKMLA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKMLA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKMMS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKMMS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMMS-01A-02D	DNA	EFO	SRS641177		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKMMS-01A-02D A44664 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44664	SRX610116	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKMMS-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKMMS-01A-02D A44664 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44664_1_lane_dupsFlagged.bam	SRR1424341	@dbgap@:reads/SRP012006/SRS641177/SRX610116/SRR1424341/SRR1424341.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKMMS-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKMMS-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKMSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMSV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMSV-01A-02D	DNA	EFO	SRS654159		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKMSV-01A-02D A41214 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41214	SRX646120	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKMSV-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAKMSV-01A-02D A41214 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41214_1_lane_dupsFlagged.bam	SRR1506865	@dbgap@:reads/SRP012006/SRS654159/SRX646120/SRR1506865/SRR1506865.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKMSV-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKMSV-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKMTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKMTZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMTZ-01A-01D	DNA	EFO	SRS653224		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKMTZ-01A-01D A41183 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41183	SRX645039	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKMTZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAKMTZ-01A-01D A41183 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41183_1_lane_dupsFlagged.bam	SRR1506695	@dbgap@:reads/SRP012006/SRS653224/SRX645039/SRR1506695/SRR1506695.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKMTZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKMTZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKMUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMUB-01A-03D	DNA	EFO	SRS625086		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKMUB-01A-03D A33736 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	314	A33736	SRX561192	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKMUB-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKMUB-01A-03D A33736 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33736_1_lane_dupsFlagged.bam	SRR1315616	@dbgap@:reads/SRP012006/SRS625086/SRX561192/SRR1315616/SRR1315616.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKMUB-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKMUB-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKMZU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKMZU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMZU-01A-01D	DNA	EFO	SRS653237		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKMZU-01A-01D A41184 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41184	SRX645052	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKMZU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAKMZU-01A-01D A41184 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41184_1_lane_dupsFlagged.bam	SRR1506741	@dbgap@:reads/SRP012006/SRS653237/SRX645052/SRR1506741/SRR1506741.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKMZU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKMZU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKNAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNAL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNAL-01A-02D	DNA	EFO	SRS639896		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNAL-01A-02D A41353 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41353	SRX608442	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKNAL-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-50-PAKNAL-01A-02D A41353 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41353_1_lane_dupsFlagged.bam	SRR1422230	@dbgap@:reads/SRP012006/SRS639896/SRX608442/SRR1422230/SRR1422230.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKNAL-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKNAL-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKNFF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKNFF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNFF-01A-01D	DNA	EFO	SRS654126		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNFF-01A-01D A41215 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41215	SRX646089	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKNFF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAKNFF-01A-01D A41215 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41215_1_lane_dupsFlagged.bam	SRR1506860	@dbgap@:reads/SRP012006/SRS654126/SRX646089/SRR1506860/SRR1506860.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKNFF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKNFF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKNGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKNGF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNGF-01A-01D	DNA	EFO	SRS625276		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNGF-01A-01D A41185 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41185	SRX561646	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKNGF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKNGF-01A-01D A41185 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41185_1_lane_dupsFlagged.bam	SRR1506744	@dbgap@:reads/SRP012006/SRS625276/SRX561646/SRR1506744/SRR1506744.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKNGF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKNGF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKNRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNRX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNRX-01A-02D	DNA	EFO	SRS639906		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNRX-01A-02D A41354 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41354	SRX608455	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKNRX-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-50-PAKNRX-01A-02D A41354 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41354_1_lane_dupsFlagged.bam	SRR1422237	@dbgap@:reads/SRP012006/SRS639906/SRX608455/SRR1422237/SRR1422237.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKNRX-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKNRX-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKNSG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKNSG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNSG-01A-01D	DNA	EFO	SRS639883		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNSG-01A-01D A41355 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41355	SRX608425	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKNSG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAKNSG-01A-01D A41355 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41355_1_lane_dupsFlagged.bam	SRR1422176	@dbgap@:reads/SRP012006/SRS639883/SRX608425/SRR1422176/SRR1422176.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKNSG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKNSG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKNTW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNTW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNTW-01A-02D	DNA	EFO	SRS190191		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNTW-01A-02D A44549 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44549	SRX646030	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKNTW-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAKNTW-01A-02D A44549 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44549_1_lane_dupsFlagged.bam	SRR1506840	@dbgap@:reads/SRP012006/SRS190191/SRX646030/SRR1506840/SRR1506840.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKNTW-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKNTW-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKNUD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKNUD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNUD-01A-01D	DNA	EFO	SRS654070		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNUD-01A-01D A41216 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41216	SRX646032	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKNUD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAKNUD-01A-01D A41216 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41216_1_lane_dupsFlagged.bam	SRR1506921	@dbgap@:reads/SRP012006/SRS654070/SRX646032/SRR1506921/SRR1506921.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKNUD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKNUD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKNXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKNXS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKNXS-01A-01D	DNA	EFO	SRS190193		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKNXS-01A-01D A44725 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44725	SRX610047	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKNXS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKNXS-01A-01D A44725 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44725_1_lane_dupsFlagged.bam	SRR1424354	@dbgap@:reads/SRP012006/SRS190193/SRX610047/SRR1424354/SRR1424354.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKNXS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKNXS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKPDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKPDF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKPDF-01A-02D	DNA	EFO	SRS639905		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKPDF-01A-02D A41356 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41356	SRX608452	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKPDF-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAKPDF-01A-02D A41356 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41356_1_lane_dupsFlagged.bam	SRR1422147	@dbgap@:reads/SRP012006/SRS639905/SRX608452/SRR1422147/SRR1422147.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKPDF-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKPDF-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKPET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKPET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKPET-01A-01D	DNA	EFO	SRS625287		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKPET-01A-01D A41186 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41186	SRX561657	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKPET-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKPET-01A-01D A41186 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41186_1_lane_dupsFlagged.bam	SRR1506724	@dbgap@:reads/SRP012006/SRS625287/SRX561657/SRR1506724/SRR1506724.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKPET-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKPET-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKPEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKPEU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKPEU-01A-01D	DNA	EFO	SRS625243		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKPEU-01A-01D A41187 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41187	SRX561613	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKPEU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKPEU-01A-01D A41187 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41187_1_lane_dupsFlagged.bam	SRR1506680	@dbgap@:reads/SRP012006/SRS625243/SRX561613/SRR1506680/SRR1506680.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKPEU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKPEU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKPIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKPIJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKPIJ-01A-01D	DNA	EFO	SRS654112		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKPIJ-01A-01D A41217 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41217	SRX646074	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKPIJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAKPIJ-01A-01D A41217 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41217_1_lane_dupsFlagged.bam	SRR1506944	@dbgap@:reads/SRP012006/SRS654112/SRX646074/SRR1506944/SRR1506944.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKPIJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKPIJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKPRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKPRZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKPRZ-01A-01D	DNA	EFO	SRS639924		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKPRZ-01A-01D A41357 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41357	SRX608479	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKPRZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAKPRZ-01A-01D A41357 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41357_1_lane_dupsFlagged.bam	SRR1422201	@dbgap@:reads/SRP012006/SRS639924/SRX608479/SRR1422201/SRR1422201.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKPRZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKPRZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKPTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKPTZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKPTZ-01A-02D	DNA	EFO	SRS641159		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKPTZ-01A-02D A44665 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44665	SRX610092	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKPTZ-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKPTZ-01A-02D A44665 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44665_1_lane_dupsFlagged.bam	SRR1424404	@dbgap@:reads/SRP012006/SRS641159/SRX610092/SRR1424404/SRR1424404.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKPTZ-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKPTZ-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKRCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRCC-01A-03D	DNA	EFO	SRS639889		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKRCC-01A-03D A41358 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41358	SRX608435	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKRCC-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAKRCC-01A-03D A41358 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41358_1_lane_dupsFlagged.bam	SRR1422216	@dbgap@:reads/SRP012006/SRS639889/SRX608435/SRR1422216/SRR1422216.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKRCC-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKRCC-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKRRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKRRF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRRF-01A-02D	DNA	EFO	SRS641175		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKRRF-01A-02D A44666 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44666	SRX610114	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKRRF-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKRRF-01A-02D A44666 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44666_1_lane_dupsFlagged.bam	SRR1424331	@dbgap@:reads/SRP012006/SRS641175/SRX610114/SRR1424331/SRR1424331.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKRRF-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKRRF-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKRVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRVH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVH-01A-02D	DNA	EFO	SRS625020		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKRVH-01A-02D A33737 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	287	A33737	SRX561126	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKRVH-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKRVH-01A-02D A33737 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33737_1_lane_dupsFlagged.bam	SRR1315594	@dbgap@:reads/SRP012006/SRS625020/SRX561126/SRR1315594/SRR1315594.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKRVH-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKRVH-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKRVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKRVV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRVV-01A-01D	DNA	EFO	SRS625094		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKRVV-01A-01D A33738 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	287	A33738	SRX561200	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKRVV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKRVV-01A-01D A33738 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33738_1_lane_dupsFlagged.bam	SRR1315601	@dbgap@:reads/SRP012006/SRS625094/SRX561200/SRR1315601/SRR1315601.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKRVV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKRVV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKRYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKRYJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRYJ-01A-02D	DNA	EFO	SRS641197		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKRYJ-01A-02D A44667 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44667	SRX610143	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKRYJ-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKRYJ-01A-02D A44667 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44667_1_lane_dupsFlagged.bam	SRR1424372	@dbgap@:reads/SRP012006/SRS641197/SRX610143/SRR1424372/SRR1424372.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKRYJ-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKRYJ-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKRZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKRZW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKRZW-01A-02D	DNA	EFO	SRS625285		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKRZW-01A-02D A41188 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41188	SRX561655	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKRZW-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKRZW-01A-02D A41188 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41188_1_lane_dupsFlagged.bam	SRR1506709	@dbgap@:reads/SRP012006/SRS625285/SRX561655/SRR1506709/SRR1506709.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKRZW-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKRZW-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKSCC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSCC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSCC-01A-01D	DNA	EFO	SRS301305		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKSCC-01A-01D A44565 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44565	SRX645970	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKSCC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAKSCC-01A-01D A44565 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44565_1_lane_dupsFlagged.bam	SRR1506824	@dbgap@:reads/SRP012006/SRS301305/SRX645970/SRR1506824/SRR1506824.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKSCC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKSCC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKSDG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKSDG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSDG-01A-02D	DNA	EFO	SRS625019		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKSDG-01A-02D A33739 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	297	A33739	SRX561125	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKSDG-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKSDG-01A-02D A33739 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33739_1_lane_dupsFlagged.bam	SRR1315574	@dbgap@:reads/SRP012006/SRS625019/SRX561125/SRR1315574/SRR1315574.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKSDG-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKSDG-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKSJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKSJN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSJN-01A-02D	DNA	EFO	SRS641123		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKSJN-01A-02D A44668 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44668	SRX610043	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKSJN-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKSJN-01A-02D A44668 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44668_1_lane_dupsFlagged.bam	SRR1424342	@dbgap@:reads/SRP012006/SRS641123/SRX610043/SRR1424342/SRR1424342.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKSJN-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKSJN-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKSRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKSRE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKSRE-01A-02D	DNA	EFO	SRS641163		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKSRE-01A-02D A44669 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44669	SRX610096	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKSRE-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKSRE-01A-02D A44669 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44669_1_lane_dupsFlagged.bam	SRR1424425	@dbgap@:reads/SRP012006/SRS641163/SRX610096/SRR1424425/SRR1424425.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKSRE-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKSRE-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKTCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKTCE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKTCE-01A-02D	DNA	EFO	SRS641131		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKTCE-01A-02D A44670 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44670	SRX610055	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKTCE-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKTCE-01A-02D A44670 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44670_1_lane_dupsFlagged.bam	SRR1424385	@dbgap@:reads/SRP012006/SRS641131/SRX610055/SRR1424385/SRR1424385.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKTCE-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKTCE-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKTLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKTLC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKTLC-01A-01D	DNA	EFO	SRS654088		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKTLC-01A-01D A41218 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41218	SRX646050	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKTLC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAKTLC-01A-01D A41218 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41218_1_lane_dupsFlagged.bam	SRR1506903	@dbgap@:reads/SRP012006/SRS654088/SRX646050/SRR1506903/SRR1506903.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKTLC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKTLC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKTRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKTRB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKTRB-01A-01D	DNA	EFO	SRS654097		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKTRB-01A-01D A41219 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41219	SRX646059	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKTRB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAKTRB-01A-01D A41219 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41219_1_lane_dupsFlagged.bam	SRR1506891	@dbgap@:reads/SRP012006/SRS654097/SRX646059/SRR1506891/SRR1506891.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKTRB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKTRB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKUCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKUCW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUCW-01A-01D	DNA	EFO	SRS639893		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKUCW-01A-01D A41359 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41359	SRX608438	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKUCW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-50-PAKUCW-01A-01D A41359 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41359_1_lane_dupsFlagged.bam	SRR1422199	@dbgap@:reads/SRP012006/SRS639893/SRX608438/SRR1422199/SRR1422199.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKUCW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKUCW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKUIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUIT-01A-01D	DNA	EFO	SRS190201		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKUIT-01A-01D A44726 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44726	SRX610103	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKUIT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKUIT-01A-01D A44726 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44726_1_lane_dupsFlagged.bam	SRR1424396	@dbgap@:reads/SRP012006/SRS190201/SRX610103/SRR1424396/SRR1424396.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKUIT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKUIT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKUJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKUJY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUJY-01A-02D	DNA	EFO	SRS641192		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKUJY-01A-02D A44671 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44671	SRX610136	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKUJY-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKUJY-01A-02D A44671 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44671_1_lane_dupsFlagged.bam	SRR1424322	@dbgap@:reads/SRP012006/SRS641192/SRX610136/SRR1424322/SRR1424322.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKUJY-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKUJY-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKULH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKULH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKULH-01A-02D	DNA	EFO	SRS190203		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKULH-01A-02D A44550 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44550	SRX645996	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKULH-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAKULH-01A-02D A44550 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44550_1_lane_dupsFlagged.bam	SRR1506793	@dbgap@:reads/SRP012006/SRS190203/SRX645996/SRR1506793/SRR1506793.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKULH-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKULH-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKUMS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKUMS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKUMS-01A-01D	DNA	EFO	SRS625048		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKUMS-01A-01D A33740 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	297	A33740	SRX561154	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKUMS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKUMS-01A-01D A33740 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33740_1_lane_dupsFlagged.bam	SRR1315586	@dbgap@:reads/SRP012006/SRS625048/SRX561154/SRR1315586/SRR1315586.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKUMS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKUMS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01D	DNA	EFO	SRS160389		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKVET-01A-01D A44551 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44551	SRX646012	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKVET-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAKVET-01A-01D A44551 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44551_1_lane_dupsFlagged.bam	SRR1506772	@dbgap@:reads/SRP012006/SRS160389/SRX646012/SRR1506772/SRR1506772.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKVET-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKVET-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKVJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKVJN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVJN-01A-01D	DNA	EFO	SRS654150		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKVJN-01A-01D A41220 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41220	SRX646112	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKVJN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAKVJN-01A-01D A41220 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41220_1_lane_dupsFlagged.bam	SRR1506896	@dbgap@:reads/SRP012006/SRS654150/SRX646112/SRR1506896/SRR1506896.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKVJN-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKVJN-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKVXE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKVXE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVXE-01A-03D	DNA	EFO	SRS639936		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKVXE-01A-03D A41360 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41360	SRX608494	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKVXE-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-50-PAKVXE-01A-03D A41360 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41360_1_lane_dupsFlagged.bam	SRR1422154	@dbgap@:reads/SRP012006/SRS639936/SRX608494/SRR1422154/SRR1422154.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKVXE-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKVXE-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKVXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKVXU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVXU-01A-01D	DNA	EFO	SRS625059		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKVXU-01A-01D A33741 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A33741	SRX561165	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKVXU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKVXU-01A-01D A33741 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33741_1_lane_dupsFlagged.bam	SRR1315612	@dbgap@:reads/SRP012006/SRS625059/SRX561165/SRR1315612/SRR1315612.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKVXU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKVXU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKWCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKWCB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWCB-01A-01D	DNA	EFO	SRS639931		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKWCB-01A-01D A41361 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41361	SRX608487	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKWCB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-50-PAKWCB-01A-01D A41361 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41361_1_lane_dupsFlagged.bam	SRR1422151	@dbgap@:reads/SRP012006/SRS639931/SRX608487/SRR1422151/SRR1422151.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKWCB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKWCB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKWDE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKWDE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWDE-01A-01D	DNA	EFO	SRS625065		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKWDE-01A-01D A33742 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	331	A33742	SRX561171	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKWDE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKWDE-01A-01D A33742 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33742_1_lane_dupsFlagged.bam	SRR1315624	@dbgap@:reads/SRP012006/SRS625065/SRX561171/SRR1315624/SRR1315624.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKWDE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKWDE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKWPM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKWPM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWPM-01A-01D	DNA	EFO	SRS287618		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKWPM-01A-01D A44552 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44552	SRX645994	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKWPM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAKWPM-01A-01D A44552 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44552_1_lane_dupsFlagged.bam	SRR1506842	@dbgap@:reads/SRP012006/SRS287618/SRX645994/SRR1506842/SRR1506842.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKWPM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKWPM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKWVW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWVW-01A-01D	DNA	EFO	SRS654157		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKWVW-01A-01D A41221 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41221	SRX646119	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKWVW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAKWVW-01A-01D A41221 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41221_1_lane_dupsFlagged.bam	SRR1506926	@dbgap@:reads/SRP012006/SRS654157/SRX646119/SRR1506926/SRR1506926.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKWVW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKWVW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKWZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKWZR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKWZR-01A-01D	DNA	EFO	SRS639937		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKWZR-01A-01D A41362 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41362	SRX608495	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKWZR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-50-PAKWZR-01A-01D A41362 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41362_1_lane_dupsFlagged.bam	SRR1422210	@dbgap@:reads/SRP012006/SRS639937/SRX608495/SRR1422210/SRR1422210.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKWZR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKWZR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKXFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKXFS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXFS-01A-01D	DNA	EFO	SRS639929		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKXFS-01A-01D A41363 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41363	SRX608484	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKXFS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAKXFS-01A-01D A41363 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41363_1_lane_dupsFlagged.bam	SRR1422215	@dbgap@:reads/SRP012006/SRS639929/SRX608484/SRR1422215/SRR1422215.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKXFS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKXFS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKXSD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXSD-01A-01D	DNA	EFO	SRS654140		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKXSD-01A-01D A41223 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41223	SRX646102	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKXSD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAKXSD-01A-01D A41223 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41223_1_lane_dupsFlagged.bam	SRR1506907	@dbgap@:reads/SRP012006/SRS654140/SRX646102/SRR1506907/SRR1506907.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKXSD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKXSD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKXSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKXSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXSE-01A-01D	DNA	EFO	SRS654077		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKXSE-01A-01D A41222 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41222	SRX646039	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKXSE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAKXSE-01A-01D A41222 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41222_1_lane_dupsFlagged.bam	SRR1506941	@dbgap@:reads/SRP012006/SRS654077/SRX646039/SRR1506941/SRR1506941.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKXSE-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKXSE-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKXWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXWB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXWB-01A-01D	DNA	EFO	SRS160391		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKXWB-01A-01D A41381 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41381	SRX608441	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKXWB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAKXWB-01A-01D A41381 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41381_1_lane_dupsFlagged.bam	SRR1422193	@dbgap@:reads/SRP012006/SRS160391/SRX608441/SRR1422193/SRR1422193.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKXWB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKXWB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXXF-01A-02D	DNA	EFO	SRS639930		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKXXF-01A-02D A41364 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41364	SRX608485	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKXXF-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAKXXF-01A-02D A41364 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41364_1_lane_dupsFlagged.bam	SRR1422219	@dbgap@:reads/SRP012006/SRS639930/SRX608485/SRR1422219/SRR1422219.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKXXF-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKXXF-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKYCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKYCN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYCN-01A-01D	DNA	EFO	SRS625078		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKYCN-01A-01D A33743 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	314	A33743	SRX561184	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKYCN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKYCN-01A-01D A33743 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33743_1_lane_dupsFlagged.bam	SRR1315608	@dbgap@:reads/SRP012006/SRS625078/SRX561184/SRR1315608/SRR1315608.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKYCN-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKYCN-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKYFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYFC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFC-01A-02D	DNA	EFO	SRS625042		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKYFC-01A-02D A33744 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	314	A33744	SRX561148	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKYFC-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKYFC-01A-02D A33744 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33744_1_lane_dupsFlagged.bam	SRR1315578	@dbgap@:reads/SRP012006/SRS625042/SRX561148/SRR1315578/SRR1315578.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKYFC-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKYFC-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKYFF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKYFF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYFF-01A-02D	DNA	EFO	SRS641169		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKYFF-01A-02D A44672 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44672	SRX610106	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKYFF-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKYFF-01A-02D A44672 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44672_1_lane_dupsFlagged.bam	SRR1424388	@dbgap@:reads/SRP012006/SRS641169/SRX610106/SRR1424388/SRR1424388.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKYFF-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKYFF-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKYGM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYGM-01A-01D	DNA	EFO	SRS654052		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKYGM-01A-01D A44562 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A44562	SRX646010	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKYGM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-50-PAKYGM-01A-01D A44562 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44562_1_lane_dupsFlagged.bam	SRR1506849	@dbgap@:reads/SRP012006/SRS654052/SRX646010/SRR1506849/SRR1506849.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKYGM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKYGM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKYJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKYJS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYJS-01A-02D	DNA	EFO	SRS641168		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKYJS-01A-02D A44673 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44673	SRX610104	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKYJS-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKYJS-01A-02D A44673 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44673_1_lane_dupsFlagged.bam	SRR1424346	@dbgap@:reads/SRP012006/SRS641168/SRX610104/SRR1424346/SRR1424346.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKYJS-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKYJS-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKYLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYLT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYLT-01A-01D	DNA	EFO	SRS190205		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKYLT-01A-01D A44727 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44727	SRX610142	"Specific Capture analysis of Wilms tumor sample TARGET-50-PAKYLT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKYLT-01A-01D A44727 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44727_1_lane_dupsFlagged.bam	SRR1424418	@dbgap@:reads/SRP012006/SRS190205/SRX610142/SRR1424418/SRR1424418.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKYLT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKYLT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKYNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKYNK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYNK-01A-01D	DNA	EFO	SRS301309		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKYNK-01A-01D A44557 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44557	SRX646003	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKYNK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAKYNK-01A-01D A44557 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44557_1_lane_dupsFlagged.bam	SRR1506778	@dbgap@:reads/SRP012006/SRS301309/SRX646003/SRR1506778/SRR1506778.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKYNK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKYNK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKYNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKYNT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYNT-01A-01D	DNA	EFO	SRS654041		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKYNT-01A-01D A44580 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44580	SRX645995	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKYNT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAKYNT-01A-01D A44580 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44580_1_lane_dupsFlagged.bam	SRR1506773	@dbgap@:reads/SRP012006/SRS654041/SRX645995/SRR1506773/SRR1506773.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKYNT-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKYNT-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKYPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKYPP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYPP-01A-01D	DNA	EFO	SRS654094		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKYPP-01A-01D A41224 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41224	SRX646056	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKYPP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PAKYPP-01A-01D A41224 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41224_1_lane_dupsFlagged.bam	SRR1506870	@dbgap@:reads/SRP012006/SRS654094/SRX646056/SRR1506870/SRR1506870.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKYPP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKYPP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKYXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKYXG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYXG-01A-01D	DNA	EFO	SRS639938		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKYXG-01A-01D A41365 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41365	SRX608496	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKYXG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAKYXG-01A-01D A41365 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41365_1_lane_dupsFlagged.bam	SRR1422163	@dbgap@:reads/SRP012006/SRS639938/SRX608496/SRR1422163/SRR1422163.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKYXG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKYXG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKZER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZER-01A-01D	DNA	EFO	SRS190207		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKZER-01A-01D A41382 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41382	SRX608471	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKZER-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PAKZER-01A-01D A41382 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41382_1_lane_dupsFlagged.bam	SRR1422169	@dbgap@:reads/SRP012006/SRS190207/SRX608471/SRR1422169/SRR1422169.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKZER-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKZER-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKZFK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZFK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZFK-01A-01D	DNA	EFO	SRS301311		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKZFK-01A-01D A44553 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A44553	SRX645965	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKZFK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-50-PAKZFK-01A-01D A44553 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44553_1_lane_dupsFlagged.bam	SRR1506834	@dbgap@:reads/SRP012006/SRS301311/SRX645965/SRR1506834/SRR1506834.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKZFK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKZFK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKZGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKZGW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZGW-01A-02D	DNA	EFO	SRS641167		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKZGW-01A-02D A44674 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44674	SRX610102	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKZGW-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKZGW-01A-02D A44674 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44674_1_lane_dupsFlagged.bam	SRR1424430	@dbgap@:reads/SRP012006/SRS641167/SRX610102/SRR1424430/SRR1424430.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKZGW-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKZGW-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKZHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKZHF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHF-01A-01D	DNA	EFO	SRS301313		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKZHF-01A-01D A44747 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44747	SRX610058	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKZHF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PAKZHF-01A-01D A44747 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44747_1_lane_dupsFlagged.bam	SRR1424392	@dbgap@:reads/SRP012006/SRS301313/SRX610058/SRR1424392/SRR1424392.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKZHF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKZHF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKZHG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKZHG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZHG-01A-01D	DNA	EFO	SRS625040		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKZHG-01A-01D A33745 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	287	A33745	SRX561146	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKZHG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PAKZHG-01A-01D A33745 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33745_1_lane_dupsFlagged.bam	SRR1315607	@dbgap@:reads/SRP012006/SRS625040/SRX561146/SRR1315607/SRR1315607.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKZHG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKZHG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PAKZMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PAKZMW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKZMW-01A-01D	DNA	EFO	SRS654033		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PAKZMW-01A-01D A44581 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44581	SRX645986	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PAKZMW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PAKZMW-01A-01D A44581 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44581_1_lane_dupsFlagged.bam	SRR1506775	@dbgap@:reads/SRP012006/SRS654033/SRX645986/SRR1506775/SRR1506775.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PAKZMW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PAKZMW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALAXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALAXJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALAXJ-01A-01D	DNA	EFO	SRS639894		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALAXJ-01A-01D A41366 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41366	SRX608439	"Specific Capture analysis of Wilms tumor sample TARGET-50-PALAXJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PALAXJ-01A-01D A41366 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41366_1_lane_dupsFlagged.bam	SRR1422159	@dbgap@:reads/SRP012006/SRS639894/SRX608439/SRR1422159/SRR1422159.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALAXJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALAXJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALBRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALBRC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALBRC-01A-03D	DNA	EFO	SRS641193		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALBRC-01A-03D A44718 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44718	SRX610138	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALBRC-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PALBRC-01A-03D A44718 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44718_1_lane_dupsFlagged.bam	SRR1424357	@dbgap@:reads/SRP012006/SRS641193/SRX610138/SRR1424357/SRR1424357.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALBRC-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALBRC-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALCAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALCAB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALCAB-01A-02D	DNA	EFO	SRS641178		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALCAB-01A-02D A44675 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44675	SRX610117	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALCAB-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PALCAB-01A-02D A44675 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44675_1_lane_dupsFlagged.bam	SRR1424348	@dbgap@:reads/SRP012006/SRS641178/SRX610117/SRR1424348/SRR1424348.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALCAB-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALCAB-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALCMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALCMK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALCMK-01A-01D	DNA	EFO	SRS301315		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALCMK-01A-01D A44563 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44563	SRX646006	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALCMK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PALCMK-01A-01D A44563 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44563_1_lane_dupsFlagged.bam	SRR1506803	@dbgap@:reads/SRP012006/SRS301315/SRX646006/SRR1506803/SRR1506803.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALCMK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALCMK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALCPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALCPP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALCPP-01A-01D	DNA	EFO	SRS654128		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALCPP-01A-01D A41225 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41225	SRX646079	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALCPP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALCPP-01A-01D A41225 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41225_1_lane_dupsFlagged.bam	SRR1506889	@dbgap@:reads/SRP012006/SRS654128/SRX646079/SRR1506889/SRR1506889.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALCPP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALCPP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALCTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALCTR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALCTR-01A-02D	DNA	EFO	SRS641191		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALCTR-01A-02D A44676 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44676	SRX610135	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALCTR-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PALCTR-01A-02D A44676 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44676_1_lane_dupsFlagged.bam	SRR1424333	@dbgap@:reads/SRP012006/SRS641191/SRX610135/SRR1424333/SRR1424333.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALCTR-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALCTR-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALCVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALCVC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALCVC-01A-01D	DNA	EFO	SRS654147		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALCVC-01A-01D A41226 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41226	SRX646108	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALCVC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALCVC-01A-01D A41226 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41226_1_lane_dupsFlagged.bam	SRR1506945	@dbgap@:reads/SRP012006/SRS654147/SRX646108/SRR1506945/SRR1506945.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALCVC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALCVC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALDAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALDAF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDAF-01A-01D	DNA	EFO	SRS654111		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALDAF-01A-01D A41227 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41227	SRX646072	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALDAF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALDAF-01A-01D A41227 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41227_1_lane_dupsFlagged.bam	SRR1506895	@dbgap@:reads/SRP012006/SRS654111/SRX646072/SRR1506895/SRR1506895.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALDAF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALDAF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALDEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALDEU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDEU-01A-01D	DNA	EFO	SRS639934		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALDEU-01A-01D A41367 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41367	SRX608490	"Specific Capture analysis of Wilms tumor sample TARGET-50-PALDEU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-50-PALDEU-01A-01D A41367 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41367_1_lane_dupsFlagged.bam	SRR1422231	@dbgap@:reads/SRP012006/SRS639934/SRX608490/SRR1422231/SRR1422231.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALDEU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALDEU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALDND	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALDND-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDND-01A-01D	DNA	EFO	SRS654109		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALDND-01A-01D A41232 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41232	SRX646071	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALDND-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALDND-01A-01D A41232 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41232_1_lane_dupsFlagged.bam	SRR1506902	@dbgap@:reads/SRP012006/SRS654109/SRX646071/SRR1506902/SRR1506902.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALDND-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALDND-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALDNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALDNR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDNR-01A-02D	DNA	EFO	SRS641118		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALDNR-01A-02D A44677 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44677	SRX610037	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALDNR-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PALDNR-01A-02D A44677 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44677_1_lane_dupsFlagged.bam	SRR1424405	@dbgap@:reads/SRP012006/SRS641118/SRX610037/SRR1424405/SRR1424405.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALDNR-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALDNR-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALDTE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDTE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDTE-01A-02D	DNA	EFO	SRS654145		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALDTE-01A-02D A41228 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41228	SRX646107	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALDTE-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALDTE-01A-02D A41228 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41228_1_lane_dupsFlagged.bam	SRR1506871	@dbgap@:reads/SRP012006/SRS654145/SRX646107/SRR1506871/SRR1506871.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALDTE-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALDTE-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALDWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWP-01A-02D	DNA	EFO	SRS654107		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALDWP-01A-02D A41229 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41229	SRX646069	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALDWP-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALDWP-01A-02D A41229 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41229_1_lane_dupsFlagged.bam	SRR1506883	@dbgap@:reads/SRP012006/SRS654107/SRX646069/SRR1506883/SRR1506883.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALDWP-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALDWP-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALDWR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALDWR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDWR-01A-01D	DNA	EFO	SRS639917		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALDWR-01A-01D A41368 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41368	SRX608468	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALDWR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-50-PALDWR-01A-01D A41368 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41368_1_lane_dupsFlagged.bam	SRR1422217	@dbgap@:reads/SRP012006/SRS639917/SRX608468/SRR1422217/SRR1422217.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALDWR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALDWR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALDYU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALDYU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDYU-01A-01D	DNA	EFO	SRS654085		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALDYU-01A-01D A41230 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41230	SRX646047	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALDYU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALDYU-01A-01D A41230 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41230_1_lane_dupsFlagged.bam	SRR1506874	@dbgap@:reads/SRP012006/SRS654085/SRX646047/SRR1506874/SRR1506874.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALDYU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALDYU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALEBJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALEBJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEBJ-01A-01D	DNA	EFO	SRS654104		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALEBJ-01A-01D A41231 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41231	SRX646066	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALEBJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALEBJ-01A-01D A41231 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41231_1_lane_dupsFlagged.bam	SRR1506898	@dbgap@:reads/SRP012006/SRS654104/SRX646066/SRR1506898/SRR1506898.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALEBJ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALEBJ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALEFG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALEFG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEFG-01A-03D	DNA	EFO	SRS654114		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALEFG-01A-03D A41233 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41233	SRX646075	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALEFG-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALEFG-01A-03D A41233 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41233_1_lane_dupsFlagged.bam	SRR1506931	@dbgap@:reads/SRP012006/SRS654114/SRX646075/SRR1506931/SRR1506931.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALEFG-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALEFG-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALEHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALEHA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEHA-01A-03D	DNA	EFO	SRS641156		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALEHA-01A-03D A44719 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44719	SRX610089	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALEHA-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PALEHA-01A-03D A44719 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44719_1_lane_dupsFlagged.bam	SRR1424409	@dbgap@:reads/SRP012006/SRS641156/SRX610089/SRR1424409/SRR1424409.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALEHA-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALEHA-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALEJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALEJW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEJW-01A-01D	DNA	EFO	SRS654151		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALEJW-01A-01D A41234 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41234	SRX646113	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALEJW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALEJW-01A-01D A41234 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41234_1_lane_dupsFlagged.bam	SRR1506917	@dbgap@:reads/SRP012006/SRS654151/SRX646113/SRR1506917/SRR1506917.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALEJW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALEJW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALERC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALERC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALERC-01A-01D	DNA	EFO	SRS301317		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALERC-01A-01D A44748 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44748	SRX610112	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALERC-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PALERC-01A-01D A44748 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44748_1_lane_dupsFlagged.bam	SRR1424393	@dbgap@:reads/SRP012006/SRS301317/SRX610112/SRR1424393/SRR1424393.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALERC-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALERC-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALEWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALEWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEWU-01A-01D	DNA	EFO	SRS654091		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALEWU-01A-01D A41235 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41235	SRX646052	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALEWU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALEWU-01A-01D A41235 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41235_1_lane_dupsFlagged.bam	SRR1506916	@dbgap@:reads/SRP012006/SRS654091/SRX646052/SRR1506916/SRR1506916.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALEWU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALEWU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALEZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALEZR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZR-01A-01D	DNA	EFO	SRS654137		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALEZR-01A-01D A41236 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41236	SRX646099	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALEZR-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALEZR-01A-01D A41236 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41236_1_lane_dupsFlagged.bam	SRR1506938	@dbgap@:reads/SRP012006/SRS654137/SRX646099/SRR1506938/SRR1506938.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALEZR-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALEZR-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALEZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALEZT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALEZT-01A-02D	DNA	EFO	SRS639909		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALEZT-01A-02D A41369 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41369	SRX608458	"Specific Capture analysis of Wilms tumor sample TARGET-50-PALEZT-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-50-PALEZT-01A-02D A41369 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41369_1_lane_dupsFlagged.bam	SRR1422208	@dbgap@:reads/SRP012006/SRS639909/SRX608458/SRR1422208/SRR1422208.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALEZT-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALEZT-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALFGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALFGK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFGK-01A-01D	DNA	EFO	SRS654106		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALFGK-01A-01D A41239 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41239	SRX646068	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALFGK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALFGK-01A-01D A41239 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41239_1_lane_dupsFlagged.bam	SRR1506873	@dbgap@:reads/SRP012006/SRS654106/SRX646068/SRR1506873/SRR1506873.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALFGK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALFGK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALFJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALFJK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFJK-01A-01D	DNA	EFO	SRS625073		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALFJK-01A-01D A33746 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	287	A33746	SRX561179	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALFJK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PALFJK-01A-01D A33746 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33746_1_lane_dupsFlagged.bam	SRR1315598	@dbgap@:reads/SRP012006/SRS625073/SRX561179/SRR1315598/SRR1315598.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALFJK-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALFJK-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALFJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALFJZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFJZ-01A-01D	DNA	EFO	SRS654078		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALFJZ-01A-01D A41237 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41237	SRX646040	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALFJZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALFJZ-01A-01D A41237 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41237_1_lane_dupsFlagged.bam	SRR1506872	@dbgap@:reads/SRP012006/SRS654078/SRX646040/SRR1506872/SRR1506872.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALFJZ-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALFJZ-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-01A-01D	DNA	EFO	SRS160395		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALFME-01A-01D A44749 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44749	SRX610131	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALFME-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PALFME-01A-01D A44749 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44749_1_lane_dupsFlagged.bam	SRR1424395	@dbgap@:reads/SRP012006/SRS160395/SRX610131/SRR1424395/SRR1424395.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALFME-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALFME-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-02A-01D	DNA	EFO	SRS160396		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALFME-02A-01D A44750 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44750	SRX610078	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALFME-02A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PALFME-02A-01D A44750 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44750_1_lane_dupsFlagged.bam	SRR1424387	@dbgap@:reads/SRP012006/SRS160396/SRX610078/SRR1424387/SRR1424387.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALFME-02A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALFME-02A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALFRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFRD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFRD-01A-02D	DNA	EFO	SRS654120		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALFRD-01A-02D A41240 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41240	SRX646084	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALFRD-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALFRD-01A-02D A41240 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41240_1_lane_dupsFlagged.bam	SRR1506876	@dbgap@:reads/SRP012006/SRS654120/SRX646084/SRR1506876/SRR1506876.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALFRD-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALFRD-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALFYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALFYP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFYP-01A-01D	DNA	EFO	SRS654141		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALFYP-01A-01D A41238 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41238	SRX646103	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALFYP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALFYP-01A-01D A41238 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41238_1_lane_dupsFlagged.bam	SRR1506920	@dbgap@:reads/SRP012006/SRS654141/SRX646103/SRR1506920/SRR1506920.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALFYP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALFYP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALGAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGAZ-01A-02D	DNA	EFO	SRS654135		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALGAZ-01A-02D A41241 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41241	SRX646097	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALGAZ-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALGAZ-01A-02D A41241 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41241_1_lane_dupsFlagged.bam	SRR1506897	@dbgap@:reads/SRP012006/SRS654135/SRX646097/SRR1506897/SRR1506897.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALGAZ-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALGAZ-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALGLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGLU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGLU-01A-02D	DNA	EFO	SRS654129		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALGLU-01A-02D A41242 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41242	SRX646091	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALGLU-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALGLU-01A-02D A41242 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41242_1_lane_dupsFlagged.bam	SRR1506947	@dbgap@:reads/SRP012006/SRS654129/SRX646091/SRR1506947/SRR1506947.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALGLU-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALGLU-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALGMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALGMA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGMA-01A-01D	DNA	EFO	SRS625053		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALGMA-01A-01D A33747 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	297	A33747	SRX561159	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALGMA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PALGMA-01A-01D A33747 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33747_1_lane_dupsFlagged.bam	SRR1315568	@dbgap@:reads/SRP012006/SRS625053/SRX561159/SRR1315568/SRR1315568.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALGMA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALGMA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALGVY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGVY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGVY-01A-02D	DNA	EFO	SRS654125		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALGVY-01A-02D A41243 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41243	SRX646088	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALGVY-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALGVY-01A-02D A41243 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41243_1_lane_dupsFlagged.bam	SRR1506899	@dbgap@:reads/SRP012006/SRS654125/SRX646088/SRR1506899/SRR1506899.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALGVY-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALGVY-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALGWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALGWU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGWU-01A-01D	DNA	EFO	SRS639884		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALGWU-01A-01D A41370 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41370	SRX608426	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALGWU-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-06	TARGET-50-PALGWU-01A-01D A41370 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41370_1_lane_dupsFlagged.bam	SRR1422205	@dbgap@:reads/SRP012006/SRS639884/SRX608426/SRR1422205/SRR1422205.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALGWU-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALGWU-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALHNG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALHNG-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALHNG-01A-01D	DNA	EFO	SRS625268		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALHNG-01A-01D A41189 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41189	SRX561638	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALHNG-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALHNG-01A-01D A41189 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41189_1_lane_dupsFlagged.bam	SRR1506700	@dbgap@:reads/SRP012006/SRS625268/SRX561638/SRR1506700/SRR1506700.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALHNG-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALHNG-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALIMN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALIMN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALIMN-01A-01D	DNA	EFO	SRS654051		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALIMN-01A-01D A44582 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44582	SRX646009	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALIMN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PALIMN-01A-01D A44582 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44582_1_lane_dupsFlagged.bam	SRR1506811	@dbgap@:reads/SRP012006/SRS654051/SRX646009/SRR1506811/SRR1506811.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALIMN-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALIMN-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALJDK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALJDK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJDK-01A-02D	DNA	EFO	SRS641133		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALJDK-01A-02D A44678 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44678	SRX610057	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALJDK-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PALJDK-01A-02D A44678 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44678_1_lane_dupsFlagged.bam	SRR1424401	@dbgap@:reads/SRP012006/SRS641133/SRX610057/SRR1424401/SRR1424401.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALJDK-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALJDK-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALJHR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJHR-01A-02D	DNA	EFO	SRS654142		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALJHR-01A-02D A41244 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41244	SRX646104	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALJHR-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALJHR-01A-02D A41244 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41244_1_lane_dupsFlagged.bam	SRR1506915	@dbgap@:reads/SRP012006/SRS654142/SRX646104/SRR1506915/SRR1506915.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALJHR-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALJHR-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-01A-02D	DNA	EFO	SRS654071		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALJIP-01A-02D A41245 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41245	SRX646033	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALJIP-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALJIP-01A-02D A41245 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41245_1_lane_dupsFlagged.bam	SRR1506905	@dbgap@:reads/SRP012006/SRS654071/SRX646033/SRR1506905/SRR1506905.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALJIP-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALJIP-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-02A-01D	DNA	EFO	SRS160401		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALJIP-02A-01D A44754 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44754	SRX610109	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALJIP-02A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PALJIP-02A-01D A44754 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44754_1_lane_dupsFlagged.bam	SRR1424368	@dbgap@:reads/SRP012006/SRS160401/SRX610109/SRR1424368/SRR1424368.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALJIP-02A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALJIP-02A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALKAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALKAW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKAW-01A-02D	DNA	EFO	SRS641154		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALKAW-01A-02D A44679 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44679	SRX610086	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALKAW-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PALKAW-01A-02D A44679 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44679_1_lane_dupsFlagged.bam	SRR1424421	@dbgap@:reads/SRP012006/SRS641154/SRX610086/SRR1424421/SRR1424421.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALKAW-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALKAW-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALKCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKCW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKCW-01A-01D	DNA	EFO	SRS489834		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALKCW-01A-01D A44554 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	345	A44554	SRX645959	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALKCW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-01	TARGET-50-PALKCW-01A-01D A44554 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44554_1_lane_dupsFlagged.bam	SRR1506817	@dbgap@:reads/SRP012006/SRS489834/SRX645959/SRR1506817/SRR1506817.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALKCW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALKCW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALKJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALKJY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKJY-01A-03D	DNA	EFO	SRS641184		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALKJY-01A-03D A44720 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44720	SRX610123	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALKJY-01A-03D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PALKJY-01A-03D A44720 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44720_1_lane_dupsFlagged.bam	SRR1424433	@dbgap@:reads/SRP012006/SRS641184/SRX610123/SRR1424433/SRR1424433.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALKJY-01A-03D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALKJY-01A-03D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALKNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALKNP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKNP-01A-01D	DNA	EFO	SRS654149		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALKNP-01A-01D A41246 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41246	SRX646111	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALKNP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALKNP-01A-01D A41246 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41246_1_lane_dupsFlagged.bam	SRR1506911	@dbgap@:reads/SRP012006/SRS654149/SRX646111/SRR1506911/SRR1506911.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALKNP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALKNP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALKRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALKRS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKRS-01A-01D	DNA	EFO	SRS118139		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALKRS-01A-01D A44555 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44555	SRX645956	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALKRS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PALKRS-01A-01D A44555 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44555_1_lane_dupsFlagged.bam	SRR1506829	@dbgap@:reads/SRP012006/SRS118139/SRX645956/SRR1506829/SRR1506829.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALKRS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALKRS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALKUD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALKUD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKUD-01A-01D	DNA	EFO	SRS639880		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALKUD-01A-01D A41371 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41371	SRX608421	"Specific Capture analysis of Wilms tumor sample TARGET-50-PALKUD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PALKUD-01A-01D A41371 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41371_1_lane_dupsFlagged.bam	SRR1422192	@dbgap@:reads/SRP012006/SRS639880/SRX608421/SRR1422192/SRR1422192.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALKUD-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALKUD-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALKWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALKWP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALKWP-01A-01D	DNA	EFO	SRS639872		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALKWP-01A-01D A41372 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41372	SRX608410	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALKWP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PALKWP-01A-01D A41372 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41372_1_lane_dupsFlagged.bam	SRR1422170	@dbgap@:reads/SRP012006/SRS639872/SRX608410/SRR1422170/SRR1422170.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALKWP-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALKWP-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALLCK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLCK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLCK-01A-02D	DNA	EFO	SRS639908		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALLCK-01A-02D A41373 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41373	SRX608456	"Specific Capture analysis of Wilms tumor sample TARGET-50-PALLCK-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PALLCK-01A-02D A41373 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41373_1_lane_dupsFlagged.bam	SRR1422209	@dbgap@:reads/SRP012006/SRS639908/SRX608456/SRR1422209/SRR1422209.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALLCK-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALLCK-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALLCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALLCW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLCW-01A-01D	DNA	EFO	SRS654136		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALLCW-01A-01D A41247 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41247	SRX646098	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALLCW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALLCW-01A-01D A41247 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41247_1_lane_dupsFlagged.bam	SRR1506940	@dbgap@:reads/SRP012006/SRS654136/SRX646098/SRR1506940/SRR1506940.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALLCW-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALLCW-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALLFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFB-01A-02D	DNA	EFO	SRS639932		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALLFB-01A-02D A41374 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41374	SRX608488	"Specific Capture analysis of Wilms tumor sample TARGET-50-PALLFB-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-12	TARGET-50-PALLFB-01A-02D A41374 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41374_1_lane_dupsFlagged.bam	SRR1422224	@dbgap@:reads/SRP012006/SRS639932/SRX608488/SRR1422224/SRR1422224.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALLFB-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALLFB-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALLFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALLFV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLFV-01A-01D	DNA	EFO	SRS625058		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALLFV-01A-01D A33748 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	297	A33748	SRX561164	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALLFV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-01-30	TARGET-50-PALLFV-01A-01D A33748 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A33748_1_lane_dupsFlagged.bam	SRR1315613	@dbgap@:reads/SRP012006/SRS625058/SRX561164/SRR1315613/SRR1315613.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALLFV-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALLFV-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALLMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon		NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALLMF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLMF-01A-01D	DNA	EFO	SRS654069		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALLMF-01A-01D A41248 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41248	SRX646031	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALLMF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALLMF-01A-01D A41248 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41248_1_lane_dupsFlagged.bam	SRR1506863	@dbgap@:reads/SRP012006/SRS654069/SRX646031/SRR1506863/SRR1506863.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALLMF-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALLMF-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALMAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALMAM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALMAM-01A-01D	DNA	EFO	SRS654059		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALMAM-01A-01D A44564 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	335	A44564	SRX646019	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALMAM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-03	TARGET-50-PALMAM-01A-01D A44564 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44564_1_lane_dupsFlagged.bam	SRR1506776	@dbgap@:reads/SRP012006/SRS654059/SRX646019/SRR1506776/SRR1506776.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALMAM-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALMAM-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALMHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALMHS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALMHS-01A-01D	DNA	EFO	SRS654102		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALMHS-01A-01D A41250 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41250	SRX646063	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALMHS-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALMHS-01A-01D A41250 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41250_1_lane_dupsFlagged.bam	SRR1506909	@dbgap@:reads/SRP012006/SRS654102/SRX646063/SRR1506909/SRR1506909.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALMHS-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALMHS-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALMII	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALMII-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALMII-01A-01D	DNA	EFO	SRS639927		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALMII-01A-01D A41375 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41375	SRX608482	"Specific Capture analysis of Wilms tumor sample TARGET-50-PALMII-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-50-PALMII-01A-01D A41375 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41375_1_lane_dupsFlagged.bam	SRR1422157	@dbgap@:reads/SRP012006/SRS639927/SRX608482/SRR1422157/SRR1422157.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALMII-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALMII-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALMPF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALMPF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALMPF-01A-02D	DNA	EFO	SRS641142		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALMPF-01A-02D A44680 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A44680	SRX610071	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALMPF-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-08	TARGET-50-PALMPF-01A-02D A44680 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A44680_1_lane_dupsFlagged.bam	SRR1424419	@dbgap@:reads/SRP012006/SRS641142/SRX610071/SRR1424419/SRR1424419.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALMPF-01A-02D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALMPF-01A-02D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALMSA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALMSA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALMSA-01A-01D	DNA	EFO	SRS654089		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALMSA-01A-01D A41249 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection		A41249	SRX646051	"Specific Capture analysis of favourable histology Wilms tumor sample TARGET-50-PALMSA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-02-05	TARGET-50-PALMSA-01A-01D A41249 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41249_1_lane_dupsFlagged.bam	SRR1506882	@dbgap@:reads/SRP012006/SRS654089/SRX646051/SRR1506882/SRR1506882.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALMSA-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALMSA-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
TARGET-50-PALNDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Validation		TARGET-50-PALNDB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALNDB-01A-01D	DNA	EFO	SRS639888		bcgsc.ca:Protocol:TargetedCapture-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-50-PALNDB-01A-01D A41376 library	PAIRED	GENOMIC	Targeted-Capture	Hybrid Selection	325	A41376	SRX608433	"Specific Capture analysis of Wilms tumor sample TARGET-50-PALNDB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:TargetedCapture-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-13	TARGET-50-PALNDB-01A-01D A41376 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:TargetedCapture-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:TargetedCapture-ReadAlign:01	A41376_1_lane_dupsFlagged.bam	SRR1422162	@dbgap@:reads/SRP012006/SRS639888/SRX608433/SRR1422162/SRR1422162.sra	2	GRCh37-lite	bcgsc.ca:Protocol:TargetedCapture-VariantCall-Mpileup:01	TARGET-50-PALNDB-01A-01D.capture_dna_tumor.vcf	3	bcgsc.ca:Protocol:TargetedCapture-Mpileup-Vcf2Maf:01	TARGET-50-PALNDB-01A-01D.format_1.2.capture_dna_tumor.maf.txt	3
