Hybridization REF	chrom	loc.start	loc.end	num.mark	num.informative	seg.mean	pval	l.lcl	l.ucl	r.pval	r.lcl	r.ucl
MSK_252152920179_S01_CGH-v4_10_27Aug08	1	554287	147203277	44170	42087	0.0028	NA	NA	NA	2.38794243619256e-67	146297175	147346371
MSK_252152920179_S01_CGH-v4_10_27Aug08	1	147306304	147644831	37	34	-1.1288	2.38794243619256e-67	146297175	147346371	5.61825878252188e-67	147490553	147847659
MSK_252152920179_S01_CGH-v4_10_27Aug08	1	147847659	247186514	36941	35331	-5e-04	5.61825878252188e-67	147490553	147847659	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	2	7019	154601442	47281	45088	5e-04	NA	NA	NA	7.48744312902261e-53	154601442	154601442
MSK_252152920179_S01_CGH-v4_10_27Aug08	2	154605621	154606943	2	2	-4.1589	7.48744312902261e-53	154601442	154601442	6.4634592265025e-52	154606943	154606943
MSK_252152920179_S01_CGH-v4_10_27Aug08	2	154608095	242689978	30544	29137	-0.0028	6.4634592265025e-52	154606943	154606943	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	3	37075	47460892	16218	15454	3e-04	NA	NA	NA	9.84552040368699e-33	47460892	47460892
MSK_252152920179_S01_CGH-v4_10_27Aug08	3	47466423	47466921	2	2	-3.2368	9.84552040368699e-33	47460892	47460892	1.92232444754949e-31	47466921	47466921
MSK_252152920179_S01_CGH-v4_10_27Aug08	3	47469018	163992903	37268	35548	-0.0018	1.92232444754949e-31	47466921	47466921	9.02274131152736e-49	163989367	164001657
MSK_252152920179_S01_CGH-v4_10_27Aug08	3	163997228	164112873	29	29	1.0511	9.02274131152736e-49	163989367	164001657	2.23876608003877e-48	164105613	164115417
MSK_252152920179_S01_CGH-v4_10_27Aug08	3	164115417	199329592	12115	11556	-0.0019	2.23876608003877e-48	164105613	164115417	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	4	34020	191153613	55161	52723	0.0016	NA	NA	NA	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	5	79142	180644810	53766	51328	-0.0011	NA	NA	NA	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	6	99130	32558677	11677	11170	0.004	NA	NA	NA	9.48084570738202e-09	32536956	32597877
MSK_252152920179_S01_CGH-v4_10_27Aug08	6	32563252	32633691	17	17	0.605	9.48084570738202e-09	32536956	32597877	2.44528590461879e-09	32600962	32654861
MSK_252152920179_S01_CGH-v4_10_27Aug08	6	32634977	54035000	8295	7908	0.0012	2.44528590461879e-09	32600962	32654861	4.33577885767992e-44	54035000	54035000
MSK_252152920179_S01_CGH-v4_10_27Aug08	6	54037199	54042734	3	3	-3.0282	4.33577885767992e-44	54035000	54035000	2.62993497870450e-41	54042734	54042734
MSK_252152920179_S01_CGH-v4_10_27Aug08	6	54045472	79018959	6432	6135	0.006	2.6299349787045e-41	54042734	54042734	3.19501891722179e-09	79008946	79028813
MSK_252152920179_S01_CGH-v4_10_27Aug08	6	79024557	79091850	13	13	-0.7015	3.19501891722179e-09	79008946	79028813	7.05311756146825e-09	79079988	79119694
MSK_252152920179_S01_CGH-v4_10_27Aug08	6	79095415	165643653	27872	26616	-0.0035	7.05311756146825e-09	79079988	79119694	7.00976788901177e-11	165642393	165643653
MSK_252152920179_S01_CGH-v4_10_27Aug08	6	165645537	165650610	4	4	1.3762	7.00976788901177e-11	165642393	165643653	6.18050959085823e-11	165650610	165653315
MSK_252152920179_S01_CGH-v4_10_27Aug08	6	165653315	170753106	1804	1747	-0.0239	6.18050959085823e-11	165650610	165653315	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	7	136373	64523575	19562	18685	0.0024	NA	NA	NA	4.01679631341379e-14	64523575	64523575
MSK_252152920179_S01_CGH-v4_10_27Aug08	7	64532019	64532949	2	2	-2.1884	4.01679631341379e-14	64523575	64523575	9.04853427748868e-14	64532949	64532949
MSK_252152920179_S01_CGH-v4_10_27Aug08	7	64534167	158821263	37131	35373	0.0015	9.04853427748868e-14	64532949	64532949	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	8	151472	579405	118	114	0.0305	NA	NA	NA	1.41730076823688e-05	576338	579405
MSK_252152920179_S01_CGH-v4_10_27Aug08	8	581533	588865	3	3	-1.2428	1.41730076823688e-05	576338	579405	6.59540007926622e-07	588865	591112
MSK_252152920179_S01_CGH-v4_10_27Aug08	8	591112	15987191	5086	4859	0.0101	6.59540007926622e-07	588865	591112	2.37279699279020e-40	15976530	15990019
MSK_252152920179_S01_CGH-v4_10_27Aug08	8	15990019	16067927	32	32	-0.8884	2.3727969927902e-40	15976530	15990019	1.34436481013326e-38	16066056	16070933
MSK_252152920179_S01_CGH-v4_10_27Aug08	8	16069607	40892587	8335	7942	-0.0047	1.34436481013326e-38	16066056	16070933	1.72169490018574e-19	40892587	40892587
MSK_252152920179_S01_CGH-v4_10_27Aug08	8	40895468	40897469	2	2	-2.5336	1.72169490018574e-19	40892587	40892587	3.24888277187786e-19	40897469	40897469
MSK_252152920179_S01_CGH-v4_10_27Aug08	8	40904488	146264846	30990	29584	0.0027	3.24888277187786e-19	40897469	40897469	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	9	189055	9967761	3663	3490	0.0065	NA	NA	NA	2.13035948711964e-27	9956178	9975359
MSK_252152920179_S01_CGH-v4_10_27Aug08	9	9969921	10084261	56	54	0.5743	2.13035948711964e-27	9956178	9975359	7.01491192760947e-27	10077003	10094363
MSK_252152920179_S01_CGH-v4_10_27Aug08	9	10086040	22477358	4118	3946	-0.0015	7.01491192760947e-27	10077003	10094363	3.48075805325341e-17	22477358	22477358
MSK_252152920179_S01_CGH-v4_10_27Aug08	9	22486980	22492603	2	2	-2.3955	3.48075805325341e-17	22477358	22477358	8.50049843874022e-18	22492603	22492603
MSK_252152920179_S01_CGH-v4_10_27Aug08	9	22499541	39130211	4891	4680	0.0031	8.50049843874022e-18	22492603	22492603	3.82183516146192e-14	39130211	43445839
MSK_252152920179_S01_CGH-v4_10_27Aug08	9	39146895	39146895	1	0	NA	3.82183516146192e-14	39130211	43445839	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	9	43445839	43599449	3	3	-1.757	NA	NA	NA	1.45250868740807e-13	43530076	43599449
MSK_252152920179_S01_CGH-v4_10_27Aug08	9	43626920	77192566	2677	2566	3e-04	1.45250868740807e-13	43530076	43599449	6.92696014435261e-53	77192566	77192566
MSK_252152920179_S01_CGH-v4_10_27Aug08	9	77194207	77200826	3	3	-3.3985	6.92696014435261e-53	77192566	77192566	3.83464472032591e-53	77200826	77200826
MSK_252152920179_S01_CGH-v4_10_27Aug08	9	77202889	77202889	1	0	NA	3.83464472032591e-53	77200826	77200826	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	9	77205169	137352394	21424	20501	-0.0119	NA	NA	NA	4.17390243973781e-12	137352394	137352394
MSK_252152920179_S01_CGH-v4_10_27Aug08	9	137354256	137356880	2	2	-2.0459	4.17390243973781e-12	137352394	137352394	3.02452521341621e-11	137356880	137356880
MSK_252152920179_S01_CGH-v4_10_27Aug08	9	137359947	140145683	1103	1044	-0.0204	3.02452521341621e-11	137356880	137356880	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	10	126361	135285645	44808	42738	-0.0017	NA	NA	NA	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	11	187649	134450318	45304	43219	-0.0018	NA	NA	NA	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	12	33854	9523923	3742	3579	-0.0018	NA	NA	NA	4.14900222868855e-42	9523923	9523923
MSK_252152920179_S01_CGH-v4_10_27Aug08	12	9528590	9531133	2	2	-3.6775	4.14900222868855e-42	9523923	9523923	1.33635397405342e-12	9531133	9531133
MSK_252152920179_S01_CGH-v4_10_27Aug08	12	9543817	9610054	14	13	-0.697	1.33635397405342e-12	9531133	9531133	9.64548159610558e-09	9589725	9630105
MSK_252152920179_S01_CGH-v4_10_27Aug08	12	9626623	132289090	41403	39451	2e-04	9.64548159610558e-09	9589725	9630105	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	13	18194544	114123340	31644	30212	-0.0016	NA	NA	NA	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	14	18446762	19271102	9	9	-0.0924	NA	NA	NA	6.13034553472771e-06	19271102	19287128
MSK_252152920179_S01_CGH-v4_10_27Aug08	14	19273289	19330020	8	8	0.5716	6.13034553472771e-06	19271102	19287128	3.19290218060657e-05	19323579	19330020
MSK_252152920179_S01_CGH-v4_10_27Aug08	14	19377290	19402284	4	4	-0.3336	3.19290218060657e-05	19323579	19330020	9.86135603048743e-05	19400407	19408583
MSK_252152920179_S01_CGH-v4_10_27Aug08	14	19403640	19490630	37	36	0.5078	9.86135603048743e-05	19400407	19408583	1.90527382676039e-13	19475864	19543544
MSK_252152920179_S01_CGH-v4_10_27Aug08	14	19492531	79176037	22284	21206	0	1.90527382676039e-13	19475864	19543544	1.03257926215046e-46	79176037	79176037
MSK_252152920179_S01_CGH-v4_10_27Aug08	14	79177462	79183154	3	3	-3.2023	1.03257926215046e-46	79176037	79176037	1.68498564017853e-49	79183154	79183154
MSK_252152920179_S01_CGH-v4_10_27Aug08	14	79185548	105597555	9297	8886	-0.0067	1.68498564017853e-49	79183154	79183154	8.54106788531718e-76	105597555	105606424
MSK_252152920179_S01_CGH-v4_10_27Aug08	14	105602602	105632168	12	12	-1.9862	8.54106788531718e-76	105597555	105606424	9.47469187851196e-41	105625010	105632168
MSK_252152920179_S01_CGH-v4_10_27Aug08	14	105673157	106358491	231	223	-0.0371	9.47469187851196e-41	105625010	105632168	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	15	18362555	100298352	31322	29898	-0.0095	NA	NA	NA	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	16	33628	75093957	20523	19619	0.0042	NA	NA	NA	3.91970490170467e-11	75093957	75093957
MSK_252152920179_S01_CGH-v4_10_27Aug08	16	75097331	75100865	3	3	1.5858	3.91970490170467e-11	75093957	75093957	4.72099512608434e-11	75100865	75102639
MSK_252152920179_S01_CGH-v4_10_27Aug08	16	75102639	88690571	5131	4908	-0.0135	4.72099512608434e-11	75100865	75102639	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	17	47546	36673853	13871	13196	-4e-04	NA	NA	NA	6.23010607516281e-17	36673853	36673853
MSK_252152920179_S01_CGH-v4_10_27Aug08	17	36675987	36683509	5	3	-1.927	6.23010607516281e-17	36673853	36673853	1.00726704080641e-16	36683509	36683509
MSK_252152920179_S01_CGH-v4_10_27Aug08	17	36684619	78653545	15758	15059	0.0049	1.00726704080641e-16	36683509	36683509	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	18	4316	76116026	22964	21931	-0.0033	NA	NA	NA	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	19	210395	1398325	492	463	-0.0125	NA	NA	NA	1.55868518269044e-09	1398325	1398325
MSK_252152920179_S01_CGH-v4_10_27Aug08	19	1400798	1400840	2	2	1.5863	1.55868518269044e-09	1398325	1398325	1.09968118230516e-07	1400840	1400840
MSK_252152920179_S01_CGH-v4_10_27Aug08	19	1405308	20841320	8828	8414	0.0097	1.09968118230516e-07	1400840	1400840	2.40382923482833e-12	20810051	20865349
MSK_252152920179_S01_CGH-v4_10_27Aug08	19	20847760	20900139	16	16	-0.687	2.40382923482833e-12	20810051	20865349	1.97966480431278e-11	20883588	20906926
MSK_252152920179_S01_CGH-v4_10_27Aug08	19	20901410	63788698	13721	13094	0.0057	1.97966480431278e-11	20883588	20906926	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	20	12719	1516966	589	551	-5e-04	NA	NA	NA	2.72647616841266e-08	1511632	1516966
MSK_252152920179_S01_CGH-v4_10_27Aug08	20	1518825	1532433	7	7	0.8369	2.72647616841266e-08	1511632	1516966	5.37560200728384e-07	1532433	1548251
MSK_252152920179_S01_CGH-v4_10_27Aug08	20	1544485	62419534	20983	20012	-0.0068	5.37560200728384e-07	1532433	1548251	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	21	9882922	46922972	13441	12837	-0.004	NA	NA	NA	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	22	14513474	14513474	1	0	NA	NA	NA	NA	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	22	14866086	16521073	405	391	0	NA	NA	NA	7.5229572872168e-36	16521073	16521073
MSK_252152920179_S01_CGH-v4_10_27Aug08	22	16523019	16524408	2	2	-3.3912	7.5229572872168e-36	16521073	16521073	8.05036944142326e-36	16524408	16524408
MSK_252152920179_S01_CGH-v4_10_27Aug08	22	16525922	22667608	2575	2469	-0.0149	8.05036944142326e-36	16524408	16524408	9.61858295114493e-67	22644243	22682428
MSK_252152920179_S01_CGH-v4_10_27Aug08	22	22677959	22725305	22	21	-1.4587	9.61858295114493e-67	22644243	22682428	8.59112487651238e-70	22718614	22735036
MSK_252152920179_S01_CGH-v4_10_27Aug08	22	22735036	35472378	6547	6246	0.004	8.59112487651238e-70	22718614	22735036	1.37168211964075e-31	35472378	35472378
MSK_252152920179_S01_CGH-v4_10_27Aug08	22	35474894	35476942	2	2	-3.1784	1.37168211964075e-31	35472378	35472378	1.99218568181696e-32	35476942	35476942
MSK_252152920179_S01_CGH-v4_10_27Aug08	22	35478503	49567768	7002	6665	-0.0039	1.99218568181696e-32	35476942	35476942	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	22	49571068	49571068	1	0	NA	NA	NA	NA	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	23	1091	2711273	1794	1716	0.0294	NA	NA	NA	2.38153584222456e-07	2705378	2719027
MSK_252152920179_S01_CGH-v4_10_27Aug08	23	2712641	2740068	11	11	0.7031	2.38153584222456e-07	2705378	2719027	0.0059456033649422	2724874	2743951
MSK_252152920179_S01_CGH-v4_10_27Aug08	23	2742851	2751284	6	6	-0.132	0.0059456033649422	2724874	2743951	1.51876584619063e-05	2747802	2768213
MSK_252152920179_S01_CGH-v4_10_27Aug08	23	2754701	3679814	377	365	0.756	1.51876584619063e-05	2747802	2768213	0.0640564408988171	3629033	3679814
MSK_252152920179_S01_CGH-v4_10_27Aug08	23	3683476	3686109	2	2	1.7378	0.0640564408988171	3629033	3679814	0.34188668449174	3686109	4010582
MSK_252152920179_S01_CGH-v4_10_27Aug08	23	3963735	23338212	7525	7154	0.893	0.34188668449174	3686109	4010582	1.01974522338562e-11	23322903	23398916
MSK_252152920179_S01_CGH-v4_10_27Aug08	23	23341304	23341304	1	0	NA	1.01974522338562e-11	23322903	23398916	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	23	23344076	23555969	41	40	1.3879	NA	NA	NA	4.03040114308613e-11	23498042	23586777
MSK_252152920179_S01_CGH-v4_10_27Aug08	23	23559688	47765476	8576	8170	0.9022	4.03040114308613e-11	23498042	23586777	3.92576138016338e-11	47725263	47775140
MSK_252152920179_S01_CGH-v4_10_27Aug08	23	47766391	47845497	37	35	1.4209	3.92576138016338e-11	47725263	47775140	2.306684480792e-17	47833612	47968529
MSK_252152920179_S01_CGH-v4_10_27Aug08	23	47898068	154446801	28526	27131	0.8772	2.306684480792e-17	47833612	47968529	3.08654155685054e-19	154446801	154446801
MSK_252152920179_S01_CGH-v4_10_27Aug08	23	154447839	154450309	3	3	-1.4429	3.08654155685054e-19	154446801	154446801	2.55548313336355e-24	154450309	154450309
MSK_252152920179_S01_CGH-v4_10_27Aug08	23	154456891	154578922	27	27	0.9511	2.55548313336355e-24	154450309	154450309	3.61324655732000e-32	154570196	154586690
MSK_252152920179_S01_CGH-v4_10_27Aug08	23	154582414	154888224	202	194	-0.0071	3.61324655732e-32	154570196	154586690	NA	NA	NA
MSK_252152920179_S01_CGH-v4_10_27Aug08	24	2710450	3223585	123	113	-2.387	NA	NA	NA	2.68738471394306e-09	2954827	3733715
MSK_252152920179_S01_CGH-v4_10_27Aug08	24	3733715	5672441	18	17	-0.714	2.68738471394306e-09	2954827	3733715	6.00837133924152e-06	5593746	6737995
MSK_252152920179_S01_CGH-v4_10_27Aug08	24	6652845	6992372	134	128	-2.1557	6.00837133924152e-06	5593746	6737995	3.73886854478263e-06	6937453	7040494
MSK_252152920179_S01_CGH-v4_10_27Aug08	24	6993680	7619927	186	176	-1.4787	3.73886854478263e-06	6937453	7040494	6.95791659001506e-08	7362895	7703962
MSK_252152920179_S01_CGH-v4_10_27Aug08	24	7625006	10511255	502	477	-2.0651	6.95791659001506e-08	7362895	7703962	8.08764115059467e-23	10433178	10645500
MSK_252152920179_S01_CGH-v4_10_27Aug08	24	10512616	13128515	222	211	-1.158	8.08764115059467e-23	10433178	10645500	2.48233079880431e-42	13101234	13147329
MSK_252152920179_S01_CGH-v4_10_27Aug08	24	13129843	14352278	412	392	-2.3611	2.48233079880431e-42	13101234	13147329	7.71244693738095e-11	14104210	14449913
MSK_252152920179_S01_CGH-v4_10_27Aug08	24	14353244	16387273	698	664	-1.864	7.71244693738095e-11	14104210	14449913	7.47175968780054e-11	16156464	16765920
MSK_252152920179_S01_CGH-v4_10_27Aug08	24	16399608	25737663	1042	989	-2.266	7.47175968780054e-11	16156464	16765920	8.68043323540582e-30	22918955	26873861
MSK_252152920179_S01_CGH-v4_10_27Aug08	24	26870361	57440809	84	83	-0.8095	8.68043323540582e-30	22918955	26873861	NA	NA	NA
