Information for 18-GMAGTGGAGRGA (Motif 21)


Reverse Opposite:

p-value:1e-8
log p-value:-1.845e+01
Information Content per bp:1.784
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif3.49%
Number of Background Sequences with motif248.4
Percentage of Background Sequences with motif0.51%
Average Position of motif in Targets105.7 +/- 54.2bp
Average Position of motif in Background97.0 +/- 52.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0130.1_ZNF354C/Jaspar

Match Rank:1
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GMAGTGGAGRGA
---GTGGAT---

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GMAGTGGAGRGA
CGGAAGTGAAAC--

MA0122.1_Nkx3-2/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GMAGTGGAGRGA
TTAAGTGGA----

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:4
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GMAGTGGAGRGA
--AATGGAAAAT

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GMAGTGGAGRGA-
---ATGGGGTGAT

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GMAGTGGAGRGA---
---GTGGCGTGACNG

MA0463.1_Bcl6/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GMAGTGGAGRGA-
NGCTTTCTAGGAAN

GFY(?)/Promoter/Homer

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GMAGTGGAGRGA
GGGAATTGTAGT--

MA0595.1_SREBF1/Jaspar

Match Rank:9
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GMAGTGGAGRGA-
---GTGGGGTGAT

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:10
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GMAGTGGAGRGA-
---CTYRAGTGSY