Information for 8-CTTAGTCTCAAA (Motif 11)


Reverse Opposite:

p-value:1e-11
log p-value:-2.609e+01
Information Content per bp:1.941
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets113.3 +/- 60.3bp
Average Position of motif in Background73.7 +/- 24.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CTTAGTCTCAAA
--CGGTTTCAAA

MA0514.1_Sox3/Jaspar

Match Rank:2
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CTTAGTCTCAAA
CCTTTGTTTT---

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CTTAGTCTCAAA
--TWGTCTGV--

MA0515.1_Sox6/Jaspar

Match Rank:4
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTTAGTCTCAAA
CCATTGTTTT---

PH0065.1_Hoxc10/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CTTAGTCTCAAA----
TAAAGTCGTAAAACGT

PH0066.1_Hoxc11/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CTTAGTCTCAAA----
TAAAGTCGTAAAATAG

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CTTAGTCTCAAA
YCTTTGTTCC---

PH0077.1_Hoxd12/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CTTAGTCTCAAA-----
CAAGGTCGTAAAATCTT

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:9
Score:0.52
Offset:2
Orientation:forward strand
Alignment:CTTAGTCTCAAA--
--AGGTCTCTAACC

PH0076.1_Hoxd11/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CTTAGTCTCAAA-----
TAAGGTCGTAAAATCCT