Information for 2-TTCAGATCMTCA (Motif 6)


Reverse Opposite:

p-value:1e-13
log p-value:-3.009e+01
Information Content per bp:1.775
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.39%
Number of Background Sequences with motif71.5
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets100.6 +/- 61.3bp
Average Position of motif in Background107.1 +/- 58.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----TTCAGATCMTCA
CGGTTTCAAA------

PH0017.1_Cux1_2/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TTCAGATCMTCA---
TAGTGATCATCATTA

PB0115.1_Ehf_2/Jaspar

Match Rank:3
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------TTCAGATCMTCA
TAGTATTTCCGATCTT--

PB0170.1_Sox17_2/Jaspar

Match Rank:4
Score:0.52
Offset:-7
Orientation:forward strand
Alignment:-------TTCAGATCMTCA
GACCACATTCATACAAT--

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--TTCAGATCMTCA
ACATCAAAGG----

PB0013.1_Eomes_1/Jaspar

Match Rank:6
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----TTCAGATCMTCA-
NNTTTTCACACCTTNNN

PB0178.1_Sox8_2/Jaspar

Match Rank:7
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---TTCAGATCMTCA
ACATTCATGACACG-

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.50
Offset:0
Orientation:forward strand
Alignment:TTCAGATCMTCA
AAGATATCCTT-

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--TTCAGATCMTCA
GTTTCACTTCCG--

PH0014.1_Cphx/Jaspar

Match Rank:10
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-TTCAGATCMTCA-
NTTGATTNNATCAN