Information for 13-CAGTATTCATCT (Motif 20)


Reverse Opposite:

p-value:1e-10
log p-value:-2.367e+01
Information Content per bp:1.919
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif9.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets100.6 +/- 45.8bp
Average Position of motif in Background88.8 +/- 56.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:1
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CAGTATTCATCT
--NTATYGATCH

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CAGTATTCATCT
GHATATKCAT--

MA0035.3_Gata1/Jaspar

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CAGTATTCATCT--
---TTCTTATCTGT

MA0037.2_GATA3/Jaspar

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CAGTATTCATCT
----TCTTATCT

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CAGTATTCATCT
TGAATTATGCAT--

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:6
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CAGTATTCATCT
----YSTTATCT

MF0005.1_Forkhead_class/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CAGTATTCATCT
---TGTTTATTT

PB0178.1_Sox8_2/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CAGTATTCATCT----
--ACATTCATGACACG

MA0036.2_GATA2/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CAGTATTCATCT--
AGATTCTTATCTGT

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CAGTATTCATCT-
---NNCTTATCTN