Information for 20-GGAAGCCAGCTG (Motif 28)


Reverse Opposite:

p-value:1e-7
log p-value:-1.780e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets75.2 +/- 42.4bp
Average Position of motif in Background96.1 +/- 42.3bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0461.1_Atoh1/Jaspar

Match Rank:1
Score:0.75
Offset:4
Orientation:reverse strand
Alignment:GGAAGCCAGCTG
----GCCATCTG

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:2
Score:0.70
Offset:3
Orientation:forward strand
Alignment:GGAAGCCAGCTG-
---NAHCAGCTGD

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:3
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:GGAAGCCAGCTG----
----GCCAGCTGBTNB

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:4
Score:0.69
Offset:3
Orientation:forward strand
Alignment:GGAAGCCAGCTG-
---NNACAGCTGC

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:5
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GGAAGCCAGCTG--
--NNVVCAGCTGBN

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.68
Offset:4
Orientation:forward strand
Alignment:GGAAGCCAGCTG--
----GCCATCTGTT

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.68
Offset:5
Orientation:forward strand
Alignment:GGAAGCCAGCTG---
-----NCAGCTGCTG

MA0522.1_Tcf3/Jaspar

Match Rank:8
Score:0.67
Offset:4
Orientation:forward strand
Alignment:GGAAGCCAGCTG---
----CACAGCTGCAG

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:9
Score:0.67
Offset:6
Orientation:reverse strand
Alignment:GGAAGCCAGCTG--
------CAGCTGTT

Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:GGAAGCCAGCTG-
---NAACAGCTGT