Information for 1-CATCTGTC (Motif 3)


Reverse Opposite:

p-value:1e-11
log p-value:-2.648e+01
Information Content per bp:1.794
Number of Target Sequences with motif125.0
Percentage of Target Sequences with motif29.07%
Number of Background Sequences with motif7741.2
Percentage of Background Sequences with motif15.80%
Average Position of motif in Targets92.9 +/- 57.2bp
Average Position of motif in Background99.4 +/- 58.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:1
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--CATCTGTC
GCCATCTGTT

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:2
Score:0.86
Offset:-6
Orientation:reverse strand
Alignment:------CATCTGTC---
CCNNACCATCTGGCCTN

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:3
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--CATCTGTC
RCCATMTGTT

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:4
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--CATCTGTC--
GCCAGCTGBTNB

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:5
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--CATCTGTC--
NVCAGCTGBBNN

MA0091.1_TAL1::TCF3/Jaspar

Match Rank:6
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----CATCTGTC
CGACCATCTGTT

MA0499.1_Myod1/Jaspar

Match Rank:7
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--CATCTGTC---
TGCAGCTGTCCCT

MA0500.1_Myog/Jaspar

Match Rank:8
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---CATCTGTC
NNGCAGCTGTC

MA0521.1_Tcf12/Jaspar

Match Rank:9
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---CATCTGTC
NNGCAGCTGTT

MA0461.1_Atoh1/Jaspar

Match Rank:10
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--CATCTGTC
GCCATCTG--