Information for 3-TAACGWGA (Motif 9)


Reverse Opposite:

p-value:1e-10
log p-value:-2.337e+01
Information Content per bp:1.541
Number of Target Sequences with motif58.0
Percentage of Target Sequences with motif13.49%
Number of Background Sequences with motif2571.7
Percentage of Background Sequences with motif5.25%
Average Position of motif in Targets102.9 +/- 51.9bp
Average Position of motif in Background98.3 +/- 60.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0139.1_Irf5_2/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TAACGWGA-----
TTGACCGAGAATTCC

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----TAACGWGA---
ANATTTTACGAGNNNN

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TAACGWGA
GGGTACGTGC

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TAACGWGA-
-TACGTGCV

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TAACGWGA
RTACGTGC

PB0007.1_Bhlhb2_1/Jaspar

Match Rank:6
Score:0.64
Offset:-7
Orientation:reverse strand
Alignment:-------TAACGWGA-------
NTNNTNGTCACGTGACNNNTNC

PH0068.1_Hoxc13/Jaspar

Match Rank:7
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TAACGWGA---
NAATTTTACGAGNTNN

PH0151.1_Pou6f1_1/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----TAACGWGA----
GACGATAATGAGCTTGC

MA0004.1_Arnt/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TAACGWGA
-CACGTG-

PH0152.1_Pou6f1_2/Jaspar

Match Rank:10
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TAACGWGA----
AAACATAATGAGGTTGC