Information for 2-GAGATAATVTGA (Motif 2)


Reverse Opposite:

p-value:1e-12
log p-value:-2.901e+01
Information Content per bp:1.859
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif5.49%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets144.8 +/- 52.0bp
Average Position of motif in Background95.6 +/- 78.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0482.1_Gata4/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GAGATAATVTGA
NNGAGATAAGA---

MA0037.2_GATA3/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GAGATAATVTGA
-AGATAAGA---

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:3
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GAGATAATVTGA
-AGATAASR---

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GAGATAATVTGA
NAGATAAGNN--

GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:5
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GAGATAATVTGA---
NNNNNBAGATAWYATCTVHN

Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GAGATAATVTGA
NBWGATAAGR---

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GAGATAATVTGA
CAGATAAGGN--

MA0035.3_Gata1/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GAGATAATVTGA
ANAGATAAGAA--

MA0036.2_GATA2/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GAGATAATVTGA-
NCAGATAAGAANNN

PB0023.1_Gata6_1/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GAGATAATVTGA-
TATAGAGATAAGAATTG