Information for 2-CGTCAGAC (Motif 17)


Reverse Opposite:

p-value:1e-8
log p-value:-2.047e+01
Information Content per bp:1.598
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif39.56%
Number of Background Sequences with motif6263.6
Percentage of Background Sequences with motif13.86%
Average Position of motif in Targets106.5 +/- 52.3bp
Average Position of motif in Background98.8 +/- 70.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CGTCAGAC
ACGTCA---

MA0018.2_CREB1/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CGTCAGAC
TGACGTCA---

PB0108.1_Atf1_2/Jaspar

Match Rank:3
Score:0.68
Offset:-6
Orientation:reverse strand
Alignment:------CGTCAGAC
NTTATTCGTCATNC

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CGTCAGAC-
AGGTGHCAGACA

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CGTCAGAC--
--CCAGACAG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CGTCAGAC----
--CCAGACRSVB

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CGTCAGAC--
--BCAGACWA

CRE(bZIP)/Promoter/Homer

Match Rank:8
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CGTCAGAC
CGGTGACGTCAC--

PB0027.1_Gmeb1_1/Jaspar

Match Rank:9
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------CGTCAGAC--
GAGTGTACGTAAGATGG

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CGTCAGAC--
AGGTGNCAGACAG