Information for 5-TGCCATCGGC (Motif 14)


Reverse Opposite:

p-value:1e-9
log p-value:-2.091e+01
Information Content per bp:1.865
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif3.02%
Number of Background Sequences with motif143.3
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets123.8 +/- 53.6bp
Average Position of motif in Background103.7 +/- 64.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--TGCCATCGGC---
ANTGCCTGAGGCAAN

MA0461.1_Atoh1/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TGCCATCGGC
-GCCATCTG-

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TGCCATCGGC-
-GCCATCTGTT

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TGCCATCGGC---
ATTGCCTGAGGCAAT

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGCCATCGGC
TTGCCAAG---

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TGCCATCGGC--
ACTATGCCAACCTACC

MA0161.1_NFIC/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGCCATCGGC
TGCCAA----

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TGCCATCGGC----
CCNNACCATCTGGCCTN

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TGCCATCGGC---
ATTCCCTGAGGGGAA

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TGCCATCGGC---
NTGCCCTAGGGCAA