Information for 5-TGCCTTTGAC (Motif 12)


Reverse Opposite:

p-value:1e-11
log p-value:-2.543e+01
Information Content per bp:1.842
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif3.51%
Number of Background Sequences with motif256.5
Percentage of Background Sequences with motif0.53%
Average Position of motif in Targets119.7 +/- 56.6bp
Average Position of motif in Background102.7 +/- 50.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TGCCTTTGAC--
TNCCTTTGATGT

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TGCCTTTGAC--
TGACCTTGACCT

MA0523.1_TCF7L2/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TGCCTTTGAC----
TNCCTTTGATCTTN

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:TGCCTTTGAC--
--CCTTTGATGT

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:5
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:TGCCTTTGAC--
--CCTTTGAWGT

PB0083.1_Tcf7_1/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TGCCTTTGAC-----
NNTTCCTTTGATCTNNA

MA0143.3_Sox2/Jaspar

Match Rank:7
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TGCCTTTGAC
--CCTTTGTT

PB0082.1_Tcf3_1/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TGCCTTTGAC-----
NNTTCCTTTGATCTANA

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TGCCTTTGAC-----
ATTTCCTTTGATCTATA

PB0040.1_Lef1_1/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TGCCTTTGAC-----
AATCCCTTTGATCTATC