Information for 2-GTGGGTGGAAAA (Motif 2)


Reverse Opposite:

p-value:1e-10
log p-value:-2.306e+01
Information Content per bp:1.956
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif4.72%
Number of Background Sequences with motif12.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets98.2 +/- 43.6bp
Average Position of motif in Background91.9 +/- 56.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0152.1_NFATC2/Jaspar

Match Rank:1
Score:0.75
Offset:5
Orientation:reverse strand
Alignment:GTGGGTGGAAAA
-----TGGAAAA

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:2
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:GTGGGTGGAAAA-
---AATGGAAAAT

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:3
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GTGGGTGGAAAA
NGCGTGGGCGGR---

PB0167.1_Sox13_2/Jaspar

Match Rank:4
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GTGGGTGGAAAA--
GTATTGGGTGGGTAATT

MA0472.1_EGR2/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----GTGGGTGGAAAA
GTGCGTGGGCGGGNG-

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GTGGGTGGAAAA
TGCGTGGGYG-----

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GTGGGTGGAAAA
CGTGGGTGGTCC-

MA0130.1_ZNF354C/Jaspar

Match Rank:8
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GTGGGTGGAAAA
----GTGGAT--

MA0162.2_EGR1/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GTGGGTGGAAAA
GGCGGGGGCGGGGG-

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GTGGGTGGAAAA----------
--NANTGGAAAAANTGAGTCAN