Information for 4-TAATAAAGCC (Motif 11)


Reverse Opposite:

p-value:1e-10
log p-value:-2.347e+01
Information Content per bp:1.886
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif13.19%
Number of Background Sequences with motif419.0
Percentage of Background Sequences with motif0.93%
Average Position of motif in Targets73.8 +/- 46.0bp
Average Position of motif in Background102.3 +/- 66.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0175.1_Vax2/Jaspar

Match Rank:1
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------TAATAAAGCC
GTGCACTAATTAAGAC

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TAATAAAGCC
GTCATAAAAN-

PB0001.1_Arid3a_1/Jaspar

Match Rank:3
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------TAATAAAGCC-
NNNTTTTAATTAANNNN

PH0153.1_Prop1/Jaspar

Match Rank:4
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------TAATAAAGCC-
GNNTNTTAATTAATNCN

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TAATAAAGCC
NCYAATAAAA--

PH0159.1_Rhox6/Jaspar

Match Rank:6
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------TAATAAAGCC-
NNGCATTAATTAANGCA

MA0465.1_CDX2/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TAATAAAGCC
AAGCCATAAAA--

PH0002.1_Alx4/Jaspar

Match Rank:8
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------TAATAAAGCC-
GNNNATTAATTAATGCG

PB0129.1_Glis2_2/Jaspar

Match Rank:9
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----TAATAAAGCC
AATATTAATAAAGA-

PH0078.1_Hoxd13/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TAATAAAGCC--
CTACCAATAAAATTCT