Information for 15-WTTTCATCCGAG (Motif 20)


Reverse Opposite:

p-value:1e-8
log p-value:-2.045e+01
Information Content per bp:1.714
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif3.30%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets118.3 +/- 56.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-WTTTCATCCGAG-
ACATTCATGACACG

MA0151.1_ARID3A/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:WTTTCATCCGAG
-TTTAAT-----

PB0170.1_Sox17_2/Jaspar

Match Rank:3
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----WTTTCATCCGAG
GACCACATTCATACAAT

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:WTTTCATCCGAG
ATTGCATCAT--

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:WTTTCATCCGAG
ATTGCATCAK--

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---WTTTCATCCGAG
GHATATKCAT-----

PH0124.1_Obox5_1/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---WTTTCATCCGAG--
NANANTTAATCCCNNNN

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-WTTTCATCCGAG
NTATYGATCH---

PH0125.1_Obox5_2/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---WTTTCATCCGAG--
GATAATTAATCCCTCTT

PB0040.1_Lef1_1/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----WTTTCATCCGAG
AATCCCTTTGATCTATC