Information for 2-TAATWTAT (Motif 10)


Reverse Opposite:

p-value:1e-5
log p-value:-1.168e+01
Information Content per bp:1.718
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif18.87%
Number of Background Sequences with motif2999.5
Percentage of Background Sequences with motif6.25%
Average Position of motif in Targets86.0 +/- 59.9bp
Average Position of motif in Background100.7 +/- 66.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.30
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0002.1_Arid5a_1/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TAATWTAT-----
CTAATATTGCTAAA

MA0485.1_Hoxc9/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TAATWTAT----
NTGATTTATGGCC

MA0075.1_Prrx2/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TAATWTAT
TAATT---

PB0080.1_Tbp_1/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TAATWTAT-----
NANTTATATATAANGN

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:5
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TAATWTAT----
TGATTTATGGCC

MA0132.1_Pdx1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TAATWTAT
CTAATT---

PB0163.1_Six6_2/Jaspar

Match Rank:7
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TAATWTAT------
ATGGGATATATCCGCCT

PB0171.1_Sox18_2/Jaspar

Match Rank:8
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----TAATWTAT---
GGACTGAATTCATGCC

MA0594.1_Hoxa9/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TAATWTAT---
TGATTTATGGC

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TAATWTAT----
TGATTTATGGCC