Information for 11-TTGCCATCTGCT (Motif 18)


Reverse Opposite:

p-value:1e-10
log p-value:-2.420e+01
Information Content per bp:1.720
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif4.94%
Number of Background Sequences with motif555.1
Percentage of Background Sequences with motif1.15%
Average Position of motif in Targets107.4 +/- 53.5bp
Average Position of motif in Background103.6 +/- 58.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:1
Score:0.82
Offset:2
Orientation:forward strand
Alignment:TTGCCATCTGCT
--GCCATCTGTT

MA0461.1_Atoh1/Jaspar

Match Rank:2
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:TTGCCATCTGCT
--GCCATCTG--

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:3
Score:0.74
Offset:2
Orientation:forward strand
Alignment:TTGCCATCTGCT
--RCCATMTGTT

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:4
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:TTGCCATCTGCT--
--GCCAGCTGBTNB

MA0522.1_Tcf3/Jaspar

Match Rank:5
Score:0.68
Offset:2
Orientation:forward strand
Alignment:TTGCCATCTGCT-
--CACAGCTGCAG

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TTGCCATCTGCT---
CCNNACCATCTGGCCTN

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:7
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TTGCCATCTGCT--
--NVCAGCTGBBNN

PB0003.1_Ascl2_1/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TTGCCATCTGCT----
CTCAGCAGCTGCTACTG

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:TTGCCATCTGCT
----CAGCTGNT

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:10
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TTGCCATCTGCT-----
ANAGTGCCACCTGGTGGCCA