Information for 20-TGGGVCGTCTCC (Motif 29)


Reverse Opposite:

p-value:1e-5
log p-value:-1.166e+01
Information Content per bp:1.840
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif4.40%
Number of Background Sequences with motif62.0
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets94.6 +/- 36.9bp
Average Position of motif in Background105.7 +/- 58.3bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0143.1_Klf7_2/Jaspar

Match Rank:1
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TGGGVCGTCTCC--
NNNTNGGGCGTATNNTN

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----TGGGVCGTCTCC-
CAKCTGKYCYYTTYCCC

Sp1(Zf)/Promoter/Homer

Match Rank:3
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TGGGVCGTCTCC
GGGGGCGGGGCC

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer

Match Rank:4
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:TGGGVCGTCTCC-
-GGGGATTCCCCC

POL013.1_MED-1/Jaspar

Match Rank:5
Score:0.52
Offset:7
Orientation:forward strand
Alignment:TGGGVCGTCTCC-
-------GCTCCG

PB0076.1_Sp4_1/Jaspar

Match Rank:6
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----TGGGVCGTCTCC
NNNAAGGGGGCGGGNNN

MA0107.1_RELA/Jaspar

Match Rank:7
Score:0.51
Offset:2
Orientation:forward strand
Alignment:TGGGVCGTCTCC
--GGGAATTTCC

MA0101.1_REL/Jaspar

Match Rank:8
Score:0.50
Offset:2
Orientation:forward strand
Alignment:TGGGVCGTCTCC
--GGGGATTTCC

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:9
Score:0.50
Offset:0
Orientation:forward strand
Alignment:TGGGVCGTCTCC
NGGGGATTTCCC

MF0003.1_REL_class/Jaspar

Match Rank:10
Score:0.49
Offset:2
Orientation:forward strand
Alignment:TGGGVCGTCTCC
--GGGGATTTCC