Information for 17-CTGAGAGAAC (Motif 30)


Reverse Opposite:

p-value:1e-4
log p-value:-1.114e+01
Information Content per bp:1.938
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif4.40%
Number of Background Sequences with motif71.5
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets97.8 +/- 44.0bp
Average Position of motif in Background99.0 +/- 67.1bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTGAGAGAAC
CTTGAGTGGCT

PB0140.1_Irf6_2/Jaspar

Match Rank:2
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CTGAGAGAAC-
NNNACCGAGAGTNNN

PB0138.1_Irf4_2/Jaspar

Match Rank:3
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CTGAGAGAAC-
GNNACCGAGAATNNN

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CTGAGAGAAC---
NNNVCTGWGYAAACASN

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTGAGAGAAC-
GGTTAGAGACCT

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CTGAGAGAAC--
--GGGAGGACNG

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CTGAGAGAAC
TTGAGTGSTT

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CTGAGAGAAC
TGCTGACTCA--

MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CTGAGAGAAC
TGCTGASTCAGC

MA0498.1_Meis1/Jaspar

Match Rank:10
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------CTGAGAGAAC
NNNTGAGTGACAGCT-