Information for 5-ATKGCGGTCTGG (Motif 5)


Reverse Opposite:

p-value:1e-12
log p-value:-2.808e+01
Information Content per bp:1.960
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif4.40%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets107.2 +/- 62.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.69
Offset:4
Orientation:forward strand
Alignment:ATKGCGGTCTGG
----CTGTCTGG

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:2
Score:0.67
Offset:5
Orientation:forward strand
Alignment:ATKGCGGTCTGG---
-----GGTCTGGCAT

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.67
Offset:2
Orientation:forward strand
Alignment:ATKGCGGTCTGG
--VBSYGTCTGG

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:ATKGCGGTCTGG-----
NNTNNTGTCTGGNNTNG

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---ATKGCGGTCTGG--
NNANTGGTGGTCTTNNN

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.55
Offset:4
Orientation:forward strand
Alignment:ATKGCGGTCTGG
----TWGTCTGV

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:ATKGCGGTCTGG
-CTGTGGTTTN-

YY1(Zf)/Promoter/Homer

Match Rank:8
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----ATKGCGGTCTGG
CAAGATGGCGGC----

MA0088.1_znf143/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--ATKGCGGTCTGG------
GCAAGGCATGATGGGAAATC

PB0164.1_Smad3_2/Jaspar

Match Rank:10
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----ATKGCGGTCTGG-
NAGANTGGCGGGGNGNA