Information for 13-GTGGACGTGCCT (Motif 16)


Reverse Opposite:

p-value:1e-8
log p-value:-2.048e+01
Information Content per bp:1.917
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif5.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets113.6 +/- 30.9bp
Average Position of motif in Background87.5 +/- 52.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:1
Score:0.71
Offset:2
Orientation:forward strand
Alignment:GTGGACGTGCCT
--GGACGTGC--

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GTGGACGTGCCT
GGGTACGTGC--

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:3
Score:0.69
Offset:3
Orientation:forward strand
Alignment:GTGGACGTGCCT
---TACGTGCV-

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:4
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GTGGACGTGCCT
--RTACGTGC--

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GTGGACGTGCCT-
--NNACTTGCCTT

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GTGGACGTGCCT
AGAGGAAGTG---

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GTGGACGTGCCT
--KCACGTGMCN

MA0464.1_Bhlhe40/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTGGACGTGCCT
NTGCACGTGAG-

ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GTGGACGTGCCT
ACAGGAAGTG---

MA0080.3_Spi1/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GTGGACGTGCCT
AAAAAGAGGAAGTGA--