Information for 1-CGTTTGTT (Motif 1)


Reverse Opposite:

p-value:1e-15
log p-value:-3.463e+01
Information Content per bp:1.476
Number of Target Sequences with motif246.0
Percentage of Target Sequences with motif39.23%
Number of Background Sequences with motif11915.0
Percentage of Background Sequences with motif24.75%
Average Position of motif in Targets98.4 +/- 53.1bp
Average Position of motif in Background99.8 +/- 61.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CGTTTGTT--
CCATTGTTNY

MA0514.1_Sox3/Jaspar

Match Rank:2
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CGTTTGTT--
CCTTTGTTTT

MA0143.3_Sox2/Jaspar

Match Rank:3
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CGTTTGTT
CCTTTGTT

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.76
Offset:0
Orientation:forward strand
Alignment:CGTTTGTT
CCWTTGTY

PB0071.1_Sox4_1/Jaspar

Match Rank:5
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----CGTTTGTT-----
TNNTCCTTTGTTCTNNT

PB0061.1_Sox11_1/Jaspar

Match Rank:6
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----CGTTTGTT-----
NNNTCCTTTGTTCTNNN

MF0011.1_HMG_class/Jaspar

Match Rank:7
Score:0.75
Offset:2
Orientation:forward strand
Alignment:CGTTTGTT
--ATTGTT

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CGTTTGTT-
NCCATTGTTC

PB0119.1_Foxa2_2/Jaspar

Match Rank:9
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CGTTTGTT------
NCNTTTGTTATTTNN

POL007.1_BREd/Jaspar

Match Rank:10
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CGTTTGTT
-GTTTGTT