Information for 5-TCCAAAGAGAGA (Motif 9)


Reverse Opposite:

p-value:1e-12
log p-value:-2.864e+01
Information Content per bp:1.874
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.75%
Number of Background Sequences with motif29.6
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets86.2 +/- 44.3bp
Average Position of motif in Background83.4 +/- 52.9bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0442.1_SOX10/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TCCAAAGAGAGA
-ACAAAG-----

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TCCAAAGAGAGA--
--GAAAGTGAAAGT

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:3
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TCCAAAGAGAGA--
--GAAAGTGAAAGT

MA0508.1_PRDM1/Jaspar

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TCCAAAGAGAGA----
-AGAAAGTGAAAGTGA

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:5
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TCCAAAGAGAGA
GGAACAAAGR----

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TCCAAAGAGAGA
VRRACAAWGG----

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TCCAAAGAGAGA
TCCCNNGGGACN

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TCCAAAGAGAGA
ACATCAAAGG----

MA0523.1_TCF7L2/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----TCCAAAGAGAGA
AAAGATCAAAGGAA--

IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TCCAAAGAGAGA--
--GAAASYGAAASY