Information for 17-AAACCAATGG (Motif 29)


Reverse Opposite:

p-value:1e-6
log p-value:-1.490e+01
Information Content per bp:1.869
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif2.56%
Number of Background Sequences with motif164.9
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets87.7 +/- 48.4bp
Average Position of motif in Background99.0 +/- 56.3bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0077.1_SOX9/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:AAACCAATGG
-GAACAATGG

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AAACCAATGG-
-AGCCAATCGG

MA0515.1_Sox6/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AAACCAATGG
AAAACAATGG

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AAACCAATGG-
-GAACAATGGN

PB0073.1_Sox7_1/Jaspar

Match Rank:5
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----AAACCAATGG-------
AATAAAGAACAATAGAATTTCA

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AAACCAATGG
ACTGAAACCA----

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AAACCAATGG
ACTAGCCAATCA

MA0038.1_Gfi1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AAACCAATGG
CAAATCACTG-

PB0067.1_Sox18_1/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----AAACCAATGG--
NNTNANAACAATTNNA

PB0036.1_Irf6_1/Jaspar

Match Rank:10
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------AAACCAATGG
CTGATCGAAACCAAAGT