Information for 1-CTGACHATTA (Motif 9)


Reverse Opposite:

p-value:1e-10
log p-value:-2.495e+01
Information Content per bp:1.731
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif18.68%
Number of Background Sequences with motif988.8
Percentage of Background Sequences with motif2.19%
Average Position of motif in Targets105.6 +/- 52.0bp
Average Position of motif in Background99.0 +/- 71.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CTGACHATTA-
-TGGCAGTTGG

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:2
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CTGACHATTA
--GGCVGTTR

MA0100.2_Myb/Jaspar

Match Rank:3
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CTGACHATTA-
-TGGCAGTTGN

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTGACHATTA-
-BRRCVGTTDN

PB0149.1_Myb_2/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CTGACHATTA----
NNNTGGCAGTTGGTNN

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CTGACHATTA--
--GGCCATTAAC

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CTGACHATTA-
---BCMATTAG

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:8
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CTGACHATTA---
-TGACCTTTNCNT

MA0063.1_Nkx2-5/Jaspar

Match Rank:9
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CTGACHATTA-
----CAATTAA

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:10
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CTGACHATTA--
----YCATTAMC