Information for 12-CATTTTAATAAM (Motif 16)


Reverse Opposite:

p-value:1e-8
log p-value:-2.049e+01
Information Content per bp:1.838
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif6.59%
Number of Background Sequences with motif51.5
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets73.1 +/- 63.5bp
Average Position of motif in Background117.0 +/- 77.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0075.1_Hoxd10/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CATTTTAATAAM--
NTNAATTTTATTGNATT

PB0129.1_Glis2_2/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CATTTTAATAAM--
AATATTAATAAAGA

PH0046.1_Hoxa10/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CATTTTAATAAM--
TNAATTTTATTACCTN

MA0151.1_ARID3A/Jaspar

Match Rank:4
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CATTTTAATAAM
---TTTAAT---

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CATTTTAATAAM
--TTTTATTRGN

PB0001.1_Arid3a_1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CATTTTAATAAM----
NNNTTTTAATTAANNNN

PH0078.1_Hoxd13/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CATTTTAATAAM--
NNANTTTTATTGGNNN

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CATTTTAATAAM
-NTTTTATGAC-

PB0187.1_Tcf7_2/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CATTTTAATAAM-
NNNTTTNTAATACNG

PH0012.1_Cdx1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CATTTTAATAAM---
NAATTTTATTACCTNN