Information for 9-GTTTGCCTAG (Motif 17)


Reverse Opposite:

p-value:1e-10
log p-value:-2.433e+01
Information Content per bp:1.855
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.55%
Number of Background Sequences with motif127.1
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets88.7 +/- 43.2bp
Average Position of motif in Background94.8 +/- 53.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:1
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GTTTGCCTAG----
NSTGTTTRCWCAGBNNN

MA0148.3_FOXA1/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----GTTTGCCTAG
TCCATGTTTACTTTG

MA0047.2_Foxa2/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GTTTGCCTAG-
TGTTTACTTAGG

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GTTTGCCTAG
--TTGCCAAG

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GTTTGCCTAG
TGTTTACTTT-

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GTTTGCCTAG
TGTTTACTTT-

MA0157.1_FOXO3/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GTTTGCCTAG
TGTTTACA---

MA0152.1_NFATC2/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GTTTGCCTAG
-TTTTCCA--

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:9
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GTTTGCCTAG
NYYTGTTTACHN--

MA0593.1_FOXP2/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GTTTGCCTAG
TNTGTTTACTT--