Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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1 |  | Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer | 1e-11 | -2.626e+01 | 0.0000 | 183.0 | 29.19% | 8634.4 | 17.93% | motif file (matrix) |
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2 |  | Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-10 | -2.453e+01 | 0.0000 | 120.0 | 19.14% | 4942.8 | 10.27% | motif file (matrix) |
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3 |  | Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-8 | -1.902e+01 | 0.0000 | 150.0 | 23.92% | 7285.2 | 15.13% | motif file (matrix) |
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4 |  | NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer | 1e-8 | -1.846e+01 | 0.0000 | 89.0 | 14.19% | 3637.0 | 7.55% | motif file (matrix) |
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5 |  | Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-7 | -1.740e+01 | 0.0000 | 217.0 | 34.61% | 11949.4 | 24.82% | motif file (matrix) |
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6 |  | Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-7 | -1.679e+01 | 0.0000 | 146.0 | 23.29% | 7282.5 | 15.13% | motif file (matrix) |
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7 |  | Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-6 | -1.446e+01 | 0.0000 | 133.0 | 21.21% | 6726.6 | 13.97% | motif file (matrix) |
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8 |  | Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-5 | -1.357e+01 | 0.0000 | 142.0 | 22.65% | 7427.6 | 15.43% | motif file (matrix) |
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9 |  | Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-5 | -1.249e+01 | 0.0001 | 95.0 | 15.15% | 4553.3 | 9.46% | motif file (matrix) |
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10 |  | Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-5 | -1.245e+01 | 0.0001 | 131.0 | 20.89% | 6856.7 | 14.24% | motif file (matrix) |
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11 |  | Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer | 1e-4 | -1.048e+01 | 0.0007 | 106.0 | 16.91% | 5498.2 | 11.42% | motif file (matrix) |
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12 |  | SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-4 | -1.045e+01 | 0.0007 | 324.0 | 51.67% | 20991.5 | 43.60% | motif file (matrix) |
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13 |  | Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer | 1e-4 | -1.037e+01 | 0.0007 | 47.0 | 7.50% | 1907.8 | 3.96% | motif file (matrix) |
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14 |  | Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-4 | -1.018e+01 | 0.0007 | 72.0 | 11.48% | 3393.4 | 7.05% | motif file (matrix) |
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15 |  | Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-4 | -1.000e+01 | 0.0008 | 214.0 | 34.13% | 12979.0 | 26.96% | motif file (matrix) |
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16 |  | FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-4 | -9.786e+00 | 0.0009 | 77.0 | 12.28% | 3745.5 | 7.78% | motif file (matrix) |
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17 |  | Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-4 | -9.552e+00 | 0.0011 | 48.0 | 7.66% | 2031.0 | 4.22% | motif file (matrix) |
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18 |  | NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-4 | -9.395e+00 | 0.0012 | 146.0 | 23.29% | 8331.7 | 17.30% | motif file (matrix) |
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19 |  | OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-4 | -9.235e+00 | 0.0014 | 21.0 | 3.35% | 622.3 | 1.29% | motif file (matrix) |
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20 |  | FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-3 | -9.164e+00 | 0.0014 | 91.0 | 14.51% | 4709.7 | 9.78% | motif file (matrix) |
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21 |  | HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer | 1e-3 | -9.132e+00 | 0.0014 | 57.0 | 9.09% | 2597.7 | 5.40% | motif file (matrix) |
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22 |  | MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer | 1e-3 | -9.086e+00 | 0.0014 | 92.0 | 14.67% | 4784.1 | 9.94% | motif file (matrix) |
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23 |  | TATA-Box(TBP)/Promoter/Homer | 1e-3 | -8.711e+00 | 0.0019 | 100.0 | 15.95% | 5358.9 | 11.13% | motif file (matrix) |
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24 |  | Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-3 | -8.593e+00 | 0.0020 | 291.0 | 46.41% | 18937.5 | 39.33% | motif file (matrix) |
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25 |  | HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer | 1e-3 | -8.528e+00 | 0.0021 | 42.0 | 6.70% | 1776.9 | 3.69% | motif file (matrix) |
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26 |  | Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-3 | -8.459e+00 | 0.0022 | 23.0 | 3.67% | 757.2 | 1.57% | motif file (matrix) |
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27 |  | MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-3 | -8.259e+00 | 0.0025 | 68.0 | 10.85% | 3367.4 | 6.99% | motif file (matrix) |
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28 |  | BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer | 1e-3 | -8.188e+00 | 0.0026 | 115.0 | 18.34% | 6437.3 | 13.37% | motif file (matrix) |
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29 |  | Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.993e+00 | 0.0031 | 53.0 | 8.45% | 2475.9 | 5.14% | motif file (matrix) |
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30 |  | Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer | 1e-3 | -7.842e+00 | 0.0035 | 76.0 | 12.12% | 3927.5 | 8.16% | motif file (matrix) |
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31 |  | Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer | 1e-3 | -7.723e+00 | 0.0038 | 125.0 | 19.94% | 7196.4 | 14.95% | motif file (matrix) |
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32 |  | Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-3 | -7.677e+00 | 0.0038 | 29.0 | 4.63% | 1118.8 | 2.32% | motif file (matrix) |
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33 |  | MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer | 1e-3 | -7.545e+00 | 0.0042 | 129.0 | 20.57% | 7503.3 | 15.58% | motif file (matrix) |
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34 |  | HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer | 1e-3 | -7.456e+00 | 0.0045 | 45.0 | 7.18% | 2051.1 | 4.26% | motif file (matrix) |
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35 |  | STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer | 1e-3 | -7.455e+00 | 0.0045 | 49.0 | 7.81% | 2291.8 | 4.76% | motif file (matrix) |
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36 |  | Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-3 | -7.261e+00 | 0.0052 | 69.0 | 11.00% | 3559.7 | 7.39% | motif file (matrix) |
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37 |  | Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer | 1e-3 | -6.978e+00 | 0.0067 | 60.0 | 9.57% | 3026.0 | 6.28% | motif file (matrix) |
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38 |  | Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.847e+00 | 0.0074 | 103.0 | 16.43% | 5862.4 | 12.18% | motif file (matrix) |
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39 |  | NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer | 1e-2 | -6.767e+00 | 0.0078 | 37.0 | 5.90% | 1646.6 | 3.42% | motif file (matrix) |
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40 |  | Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer | 1e-2 | -6.622e+00 | 0.0088 | 76.0 | 12.12% | 4104.8 | 8.53% | motif file (matrix) |
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41 |  | Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer | 1e-2 | -6.381e+00 | 0.0109 | 112.0 | 17.86% | 6562.5 | 13.63% | motif file (matrix) |
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42 |  | AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer | 1e-2 | -6.300e+00 | 0.0115 | 110.0 | 17.54% | 6441.4 | 13.38% | motif file (matrix) |
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43 |  | AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -6.199e+00 | 0.0125 | 53.0 | 8.45% | 2686.3 | 5.58% | motif file (matrix) |
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44 |  | Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-2 | -5.903e+00 | 0.0164 | 48.0 | 7.66% | 2410.9 | 5.01% | motif file (matrix) |
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45 |  | Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer | 1e-2 | -5.895e+00 | 0.0164 | 101.0 | 16.11% | 5905.4 | 12.27% | motif file (matrix) |
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46 |  | Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer | 1e-2 | -5.869e+00 | 0.0164 | 22.0 | 3.51% | 868.3 | 1.80% | motif file (matrix) |
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47 |  | Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer | 1e-2 | -5.560e+00 | 0.0216 | 19.0 | 3.03% | 728.0 | 1.51% | motif file (matrix) |
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48 |  | Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.544e+00 | 0.0216 | 79.0 | 12.60% | 4482.1 | 9.31% | motif file (matrix) |
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49 |  | Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer | 1e-2 | -5.507e+00 | 0.0219 | 15.0 | 2.39% | 520.8 | 1.08% | motif file (matrix) |
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50 |  | Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer | 1e-2 | -5.458e+00 | 0.0225 | 17.0 | 2.71% | 627.8 | 1.30% | motif file (matrix) |
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51 |  | HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer | 1e-2 | -5.307e+00 | 0.0257 | 78.0 | 12.44% | 4458.4 | 9.26% | motif file (matrix) |
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52 |  | HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-2 | -5.165e+00 | 0.0290 | 89.0 | 14.19% | 5231.5 | 10.87% | motif file (matrix) |
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53 |  | FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-2 | -5.088e+00 | 0.0307 | 34.0 | 5.42% | 1641.9 | 3.41% | motif file (matrix) |
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54 |  | AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.069e+00 | 0.0307 | 69.0 | 11.00% | 3898.7 | 8.10% | motif file (matrix) |
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55 |  | Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-2 | -5.000e+00 | 0.0324 | 57.0 | 9.09% | 3116.2 | 6.47% | motif file (matrix) |
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56 |  | Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-2 | -4.974e+00 | 0.0326 | 135.0 | 21.53% | 8485.1 | 17.62% | motif file (matrix) |
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57 |  | BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-2 | -4.971e+00 | 0.0326 | 45.0 | 7.18% | 2344.2 | 4.87% | motif file (matrix) |
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58 |  | Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer | 1e-2 | -4.867e+00 | 0.0350 | 182.0 | 29.03% | 11898.6 | 24.71% | motif file (matrix) |
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59 |  | STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer | 1e-2 | -4.849e+00 | 0.0351 | 30.0 | 4.78% | 1424.7 | 2.96% | motif file (matrix) |
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60 |  | Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer | 1e-2 | -4.825e+00 | 0.0353 | 129.0 | 20.57% | 8097.3 | 16.82% | motif file (matrix) |
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61 |  | Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-2 | -4.790e+00 | 0.0360 | 36.0 | 5.74% | 1800.3 | 3.74% | motif file (matrix) |
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62 |  | Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer | 1e-2 | -4.757e+00 | 0.0366 | 33.0 | 5.26% | 1618.1 | 3.36% | motif file (matrix) |
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63 |  | p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer | 1e-2 | -4.696e+00 | 0.0383 | 25.0 | 3.99% | 1140.2 | 2.37% | motif file (matrix) |
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