Information for 9-GGGCGTTTCTCC (Motif 10)


Reverse Opposite:

p-value:1e-10
log p-value:-2.369e+01
Information Content per bp:1.955
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif4.40%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets88.2 +/- 49.8bp
Average Position of motif in Background154.2 +/- 24.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0143.1_Klf7_2/Jaspar

Match Rank:1
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----GGGCGTTTCTCC
NNNTNGGGCGTATNNTN

PB0137.1_Irf3_2/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GGGCGTTTCTCC
NNGCACCTTTCTCC

MA0105.3_NFKB1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GGGCGTTTCTCC
GGGAATTTCCC-

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GGGCGTTTCTCC-
-GGGGATTCCCCC

MA0107.1_RELA/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GGGCGTTTCTCC
GGGAATTTCC--

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGGCGTTTCTCC
NGGGGATTTCCC-

MF0003.1_REL_class/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GGGCGTTTCTCC
GGGGATTTCC--

MA0101.1_REL/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GGGCGTTTCTCC
GGGGATTTCC--

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGGCGTTTCTCC
GGGAATTTCC--

PB0180.1_Sp4_2/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GGGCGTTTCTCC
CAAAGGCGTGGCCAG