Information for 10-CATTGATGAATG (Motif 12)


Reverse Opposite:

p-value:1e-9
log p-value:-2.159e+01
Information Content per bp:1.908
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets66.0 +/- 49.2bp
Average Position of motif in Background127.3 +/- 45.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0134.1_Pbx1/Jaspar

Match Rank:1
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----CATTGATGAATG-
NNNNNATTGATGNGTGN

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:2
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CATTGATGAATG-
---TGATTGATGA

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:3
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CATTGATGAATG---
---TGATTRATGGCY

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:4
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CATTGATGAATG--
--ATGATKGATGRC

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CATTGATGAATG-
NNTNTCATGAATGT

PB0082.1_Tcf3_1/Jaspar

Match Rank:6
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----CATTGATGAATG
NNTTCCTTTGATCTANA

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CATTGATGAATG
ATTTCCTTTGATCTATA

PB0170.1_Sox17_2/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CATTGATGAATG-----
NTTNTATGAATGTGNNC

MA0070.1_PBX1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CATTGATGAATG-
-TTTGATTGATGN

PB0040.1_Lef1_1/Jaspar

Match Rank:10
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CATTGATGAATG
AATCCCTTTGATCTATC