Information for 18-CTCGCCAATA (Motif 32)


Reverse Opposite:

p-value:1e-3
log p-value:-8.972e+00
Information Content per bp:1.960
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif2.20%
Number of Background Sequences with motif8.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets102.2 +/- 61.5bp
Average Position of motif in Background82.8 +/- 51.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0161.1_NFIC/Jaspar

Match Rank:1
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CTCGCCAATA
--TGCCAA--

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CTCGCCAATA-
ACTAGCCAATCA

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CTCGCCAATA--
--AGCCAATCGG

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CTCGCCAATA--
TACGCCCCGCCACTCTG

MA0502.1_NFYB/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CTCGCCAATA--
AAATGGACCAATCAG

MA0078.1_Sox17/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CTCGCCAATA--
---GACAATGNN

POL006.1_BREu/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CTCGCCAATA
AGCGCGCC----

PH0048.1_Hoxa13/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CTCGCCAATA--
AAACCTCGTAAAATTT

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CTCGCCAATA
CTTGGCAA--

PB0180.1_Sp4_2/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----CTCGCCAATA
NNGGCCACGCCTTTN