Information for 12-AGAGGGTCCTCC (Motif 15)


Reverse Opposite:

p-value:1e-8
log p-value:-2.049e+01
Information Content per bp:1.787
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif2.33%
Number of Background Sequences with motif71.5
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets101.2 +/- 49.8bp
Average Position of motif in Background81.5 +/- 55.8bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.72
Offset:3
Orientation:forward strand
Alignment:AGAGGGTCCTCC-
---CNGTCCTCCC

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGAGGGTCCTCC---
AGATGCTRCTRCCHT

PB0203.1_Zfp691_2/Jaspar

Match Rank:3
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AGAGGGTCCTCC---
TACGAGACTCCTCTAAC

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----AGAGGGTCCTCC
GRACAGWMTGTYCTB-

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:5
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----AGAGGGTCCTCC
GVACAGNMTGTYCTB-

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:6
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AGAGGGTCCTCC
CGTGGGTGGTCC

MA0113.2_NR3C1/Jaspar

Match Rank:7
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----AGAGGGTCCTCC
AGAACAGAATGTTCT--

MA0007.2_AR/Jaspar

Match Rank:8
Score:0.49
Offset:-4
Orientation:reverse strand
Alignment:----AGAGGGTCCTCC
GNACANNNTGTTCTT-

PB0194.1_Zbtb12_2/Jaspar

Match Rank:9
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:AGAGGGTCCTCC-----
--AGNGTTCTAATGANN

MA0160.1_NR4A2/Jaspar

Match Rank:10
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:AGAGGGTCCTCC
---GTGACCTT-