Information for 7-TTGTTTGTCCCG (Motif 10)


Reverse Opposite:

p-value:1e-12
log p-value:-2.851e+01
Information Content per bp:1.831
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets77.0 +/- 43.9bp
Average Position of motif in Background110.3 +/- 54.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0011.1_HMG_class/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TTGTTTGTCCCG
ATTGTT-------

MA0087.1_Sox5/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TTGTTTGTCCCG
ATTGTTA------

MA0041.1_Foxd3/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TTGTTTGTCCCG
GAATGTTTGTTT--

PB0093.1_Zfp105_1/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TTGTTTGTCCCG
NTNTTGTTGTTTGTN

PB0119.1_Foxa2_2/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TTGTTTGTCCCG
NCNTTTGTTATTTNN-

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TTGTTTGTCCCG
CCATTGTTNY-----

MA0040.1_Foxq1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TTGTTTGTCCCG
TATTGTTTATT---

MA0084.1_SRY/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TTGTTTGTCCCG
ATTGTTTAN----

MA0042.1_FOXI1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TTGTTTGTCCCG
GGATGTTTGTTT--

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TTGTTTGTCCCG
-YCTTTGTTCC-