Information for 2-TCTTTTACTG (Motif 5)


Reverse Opposite:

p-value:1e-13
log p-value:-3.131e+01
Information Content per bp:1.530
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif6.86%
Number of Background Sequences with motif811.1
Percentage of Background Sequences with motif1.68%
Average Position of motif in Targets105.0 +/- 52.5bp
Average Position of motif in Background104.0 +/- 57.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:1
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:TCTTTTACTG--
--TTTAATTGCN

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:TCTTTTACTG--
--TTTTATTRGN

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TCTTTTACTG--
CCTTTTATAGNC

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TCTTTTACTG----
NNANTTTTATTGGNNN

PH0057.1_Hoxb13/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TCTTTTACTG----
NNAATTTTATTGGNTN

MA0465.1_CDX2/Jaspar

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TCTTTTACTG---
--TTTTATGGCTN

PH0075.1_Hoxd10/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TCTTTTACTG----
NTNAATTTTATTGNATT

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TCTTTTACTG-
-NTTTTATGAC

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TCTTTTACTG--
ACTTTCACTTTC

PB0015.1_Foxa2_1/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TCTTTTACTG---
NNNTTTGTTTACTTTTN