Information for 20-TTCCTAGCAG (Motif 29)


Reverse Opposite:

p-value:1e-7
log p-value:-1.627e+01
Information Content per bp:1.755
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif5.10%
Number of Background Sequences with motif826.9
Percentage of Background Sequences with motif1.72%
Average Position of motif in Targets112.0 +/- 54.8bp
Average Position of motif in Background98.4 +/- 56.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0144.2_STAT3/Jaspar

Match Rank:1
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-TTCCTAGCAG
TTTCCCAGAAN

MA0518.1_Stat4/Jaspar

Match Rank:2
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----TTCCTAGCAG
NNNTTTCCTGGAAA

MA0519.1_Stat5a::Stat5b/Jaspar

Match Rank:3
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--TTCCTAGCAG
ATTTCCAAGAA-

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:4
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--TTCCTAGCAG
NTTTCTNAGAAA

MA0137.3_STAT1/Jaspar

Match Rank:5
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TTCCTAGCAG
TTTCCTGGAAA

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:6
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TTCCTAGCAG-
NNCTTCCNGGAAGN

STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer

Match Rank:7
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TTCCTAGCAG-
TTTCCNGGAAAN

MA0463.1_Bcl6/Jaspar

Match Rank:8
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TTCCTAGCAG---
TTTCCTAGAAAGCA

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TTCCTAGCAG
TTCCNGGAAG

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:10
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TTCCTAGCAG----
TTTCCTGGAAAGNNN