Information for 1-ACSATCTGMCAG (Motif 4)


Reverse Opposite:

p-value:1e-13
log p-value:-3.153e+01
Information Content per bp:1.723
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif5.26%
Number of Background Sequences with motif474.9
Percentage of Background Sequences with motif0.99%
Average Position of motif in Targets101.6 +/- 58.5bp
Average Position of motif in Background99.5 +/- 58.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0461.1_Atoh1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:ACSATCTGMCAG
GCCATCTG----

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:2
Score:0.70
Offset:3
Orientation:forward strand
Alignment:ACSATCTGMCAG-
---VGCTGWCAVB

PB0149.1_Myb_2/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--ACSATCTGMCAG--
CGACCAACTGCCATGC

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:ACSATCTGMCAG
GCCATCTGTT--

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.68
Offset:5
Orientation:forward strand
Alignment:ACSATCTGMCAG-
-----TTGCCAAG

MA0100.2_Myb/Jaspar

Match Rank:6
Score:0.68
Offset:1
Orientation:forward strand
Alignment:ACSATCTGMCAG
-CCAACTGCCA-

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:7
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----ACSATCTGMCAG-
CCNNACCATCTGGCCTN

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:ACSATCTGMCAG
-CCAACTGCCA-

MA0498.1_Meis1/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ACSATCTGMCAG--
NNNTGAGTGACAGCT

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:10
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:ACSATCTGMCAG
GCCAGCTGBTNB