Information for 17-AGGAACAKTT (Motif 27)


Reverse Opposite:

p-value:1e-7
log p-value:-1.829e+01
Information Content per bp:1.880
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif2.07%
Number of Background Sequences with motif120.5
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets94.5 +/- 66.4bp
Average Position of motif in Background95.9 +/- 51.4bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AGGAACAKTT
CCAGGAACAG--

PB0173.1_Sox21_2/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---AGGAACAKTT----
NNNNNGAACAATTGANN

PB0047.1_Myf6_1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGGAACAKTT-----
GAAGAACAGGTGTCCG

PB0063.1_Sox13_1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGGAACAKTT----
TTAAGAACAATAAATT

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:5
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AGGAACAKTT--
--BRRCVGTTDN

PB0072.1_Sox5_1/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AGGAACAKTT----
TTTAGAACAATAAAAT

PB0066.1_Sox17_1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGGAACAKTT-----
ATAAACAATTAAACA

MA0007.2_AR/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGGAACAKTT-----
AAGAACAGAATGTTC

PB0070.1_Sox30_1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGGAACAKTT-----
AATGAACAATGGAATT

PB0175.1_Sox4_2/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGGAACAKTT-----
TNCNNAACAATTTTTNC