Information for 6-CAGAAACAAA (Motif 20)


Reverse Opposite:

p-value:1e-8
log p-value:-1.877e+01
Information Content per bp:1.735
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif7.21%
Number of Background Sequences with motif1046.1
Percentage of Background Sequences with motif2.13%
Average Position of motif in Targets100.6 +/- 55.6bp
Average Position of motif in Background104.1 +/- 58.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0514.1_Sox3/Jaspar

Match Rank:1
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:CAGAAACAAA--
--AAAACAAAGG

PB0016.1_Foxj1_1/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CAGAAACAAA----
AAAGTAAACAAAAATT

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CAGAAACAAA------
AGAAGAACAAAGGACTA

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:4
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CAGAAACAAA---
-AGAAACGAAAGT

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CAGAAACAAA------
ATAAGAACAAAGGACTA

MA0042.1_FOXI1/Jaspar

Match Rank:6
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CAGAAACAAA-----
---AAACAAACANNC

MF0011.1_HMG_class/Jaspar

Match Rank:7
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:CAGAAACAAA
----AACAAT

PB0166.1_Sox12_2/Jaspar

Match Rank:8
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CAGAAACAAA-----
AAACAGACAAAGGAAT

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CAGAAACAAA--
--GGAACAAAGR

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CAGAAACAAA--
--RNAACAATGG