Information for 2-CCATTAAT (Motif 2)


Reverse Opposite:

p-value:1e-15
log p-value:-3.460e+01
Information Content per bp:1.639
Number of Target Sequences with motif190.0
Percentage of Target Sequences with motif30.30%
Number of Background Sequences with motif8318.0
Percentage of Background Sequences with motif17.28%
Average Position of motif in Targets96.0 +/- 58.8bp
Average Position of motif in Background99.8 +/- 61.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0151.1_ARID3A/Jaspar

Match Rank:1
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:CCATTAAT
--TTTAAT

PH0150.1_Pou4f3/Jaspar

Match Rank:2
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----CCATTAAT----
GACNTCATTAATAANN

PH0080.1_Hoxd8/Jaspar

Match Rank:3
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---CCATTAAT------
NAGCCATTAATTANTTA

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:4
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--CCATTAAT--
RGCCATYAATCA

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CCATTAAT--
TCATCAATCA

PB0178.1_Sox8_2/Jaspar

Match Rank:6
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CCATTAAT------
ACATTCATGACACG

PH0073.1_Hoxc9/Jaspar

Match Rank:7
Score:0.76
Offset:-5
Orientation:forward strand
Alignment:-----CCATTAAT---
GGAGGTCATTAATTAT

MA0594.1_Hoxa9/Jaspar

Match Rank:8
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-CCATTAAT--
GCCATAAATCA

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:9
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CCATTAAT
YCATTAMC

PB0170.1_Sox17_2/Jaspar

Match Rank:10
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----CCATTAAT-----
GACCACATTCATACAAT