Information for 1-CAGACACGTT (Motif 3)


Reverse Opposite:

p-value:1e-14
log p-value:-3.289e+01
Information Content per bp:1.651
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif6.22%
Number of Background Sequences with motif638.5
Percentage of Background Sequences with motif1.33%
Average Position of motif in Targets106.9 +/- 44.7bp
Average Position of motif in Background99.5 +/- 63.7bp
Strand Bias (log2 ratio + to - strand density)-1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:1
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:CAGACACGTT-
---GCACGTNC

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:2
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:CAGACACGTT-
---GCACGTAY

MA0004.1_Arnt/Jaspar

Match Rank:3
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:CAGACACGTT
----CACGTG

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:4
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CAGACACGTT---
---GCACGTACCC

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CAGACACGTT
--GHCACGTG

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CAGACACGTT
--BGCACGTA

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:7
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CAGACACGTT
----CACGCA

MA0067.1_Pax2/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CAGACACGTT
-AGTCACGC-

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CAGACACGTT
--GNCACGTG

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CAGACACGTT-
-TBGCACGCAA