Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 627)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48156)	% of Background Sequences with Motif
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-11	-2.626e+01	0.0000	183.0	29.19%	8634.4	17.93%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-10	-2.453e+01	0.0000	120.0	19.14%	4942.8	10.27%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-8	-1.902e+01	0.0000	150.0	23.92%	7285.2	15.13%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-8	-1.846e+01	0.0000	89.0	14.19%	3637.0	7.55%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-7	-1.740e+01	0.0000	217.0	34.61%	11949.4	24.82%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-7	-1.679e+01	0.0000	146.0	23.29%	7282.5	15.13%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-6	-1.446e+01	0.0000	133.0	21.21%	6726.6	13.97%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-5	-1.357e+01	0.0000	142.0	22.65%	7427.6	15.43%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-5	-1.249e+01	0.0001	95.0	15.15%	4553.3	9.46%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-5	-1.245e+01	0.0001	131.0	20.89%	6856.7	14.24%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-4	-1.048e+01	0.0007	106.0	16.91%	5498.2	11.42%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-4	-1.045e+01	0.0007	324.0	51.67%	20991.5	43.60%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-4	-1.037e+01	0.0007	47.0	7.50%	1907.8	3.96%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-4	-1.018e+01	0.0007	72.0	11.48%	3393.4	7.05%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-4	-1.000e+01	0.0008	214.0	34.13%	12979.0	26.96%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-4	-9.786e+00	0.0009	77.0	12.28%	3745.5	7.78%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-4	-9.552e+00	0.0011	48.0	7.66%	2031.0	4.22%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-4	-9.395e+00	0.0012	146.0	23.29%	8331.7	17.30%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-4	-9.235e+00	0.0014	21.0	3.35%	622.3	1.29%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-3	-9.164e+00	0.0014	91.0	14.51%	4709.7	9.78%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-3	-9.132e+00	0.0014	57.0	9.09%	2597.7	5.40%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-3	-9.086e+00	0.0014	92.0	14.67%	4784.1	9.94%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-3	-8.711e+00	0.0019	100.0	15.95%	5358.9	11.13%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-3	-8.593e+00	0.0020	291.0	46.41%	18937.5	39.33%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-3	-8.528e+00	0.0021	42.0	6.70%	1776.9	3.69%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-3	-8.459e+00	0.0022	23.0	3.67%	757.2	1.57%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-3	-8.259e+00	0.0025	68.0	10.85%	3367.4	6.99%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-3	-8.188e+00	0.0026	115.0	18.34%	6437.3	13.37%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-3	-7.993e+00	0.0031	53.0	8.45%	2475.9	5.14%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-3	-7.842e+00	0.0035	76.0	12.12%	3927.5	8.16%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-3	-7.723e+00	0.0038	125.0	19.94%	7196.4	14.95%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-3	-7.677e+00	0.0038	29.0	4.63%	1118.8	2.32%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-3	-7.545e+00	0.0042	129.0	20.57%	7503.3	15.58%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-3	-7.456e+00	0.0045	45.0	7.18%	2051.1	4.26%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-3	-7.455e+00	0.0045	49.0	7.81%	2291.8	4.76%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-3	-7.261e+00	0.0052	69.0	11.00%	3559.7	7.39%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-3	-6.978e+00	0.0067	60.0	9.57%	3026.0	6.28%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-2	-6.847e+00	0.0074	103.0	16.43%	5862.4	12.18%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-2	-6.767e+00	0.0078	37.0	5.90%	1646.6	3.42%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-2	-6.622e+00	0.0088	76.0	12.12%	4104.8	8.53%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-2	-6.381e+00	0.0109	112.0	17.86%	6562.5	13.63%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-2	-6.300e+00	0.0115	110.0	17.54%	6441.4	13.38%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-2	-6.199e+00	0.0125	53.0	8.45%	2686.3	5.58%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-2	-5.903e+00	0.0164	48.0	7.66%	2410.9	5.01%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-2	-5.895e+00	0.0164	101.0	16.11%	5905.4	12.27%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-2	-5.869e+00	0.0164	22.0	3.51%	868.3	1.80%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-2	-5.560e+00	0.0216	19.0	3.03%	728.0	1.51%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-2	-5.544e+00	0.0216	79.0	12.60%	4482.1	9.31%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-2	-5.507e+00	0.0219	15.0	2.39%	520.8	1.08%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-2	-5.458e+00	0.0225	17.0	2.71%	627.8	1.30%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-2	-5.307e+00	0.0257	78.0	12.44%	4458.4	9.26%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-2	-5.165e+00	0.0290	89.0	14.19%	5231.5	10.87%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-2	-5.088e+00	0.0307	34.0	5.42%	1641.9	3.41%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-2	-5.069e+00	0.0307	69.0	11.00%	3898.7	8.10%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-2	-5.000e+00	0.0324	57.0	9.09%	3116.2	6.47%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-2	-4.974e+00	0.0326	135.0	21.53%	8485.1	17.62%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-2	-4.971e+00	0.0326	45.0	7.18%	2344.2	4.87%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-2	-4.867e+00	0.0350	182.0	29.03%	11898.6	24.71%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-2	-4.849e+00	0.0351	30.0	4.78%	1424.7	2.96%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-2	-4.825e+00	0.0353	129.0	20.57%	8097.3	16.82%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-2	-4.790e+00	0.0360	36.0	5.74%	1800.3	3.74%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-2	-4.757e+00	0.0366	33.0	5.26%	1618.1	3.36%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-2	-4.696e+00	0.0383	25.0	3.99%	1140.2	2.37%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-4.387e+00	0.0513	144.0	22.97%	9287.7	19.29%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-4.300e+00	0.0551	38.0	6.06%	1991.9	4.14%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-1	-4.289e+00	0.0551	128.0	20.41%	8168.5	16.97%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-4.272e+00	0.0551	74.0	11.80%	4390.0	9.12%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-1	-4.097e+00	0.0646	45.0	7.18%	2475.8	5.14%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-4.096e+00	0.0646	24.0	3.83%	1142.9	2.37%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-4.073e+00	0.0646	39.0	6.22%	2088.5	4.34%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-4.038e+00	0.0656	41.0	6.54%	2223.4	4.62%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-1	-3.980e+00	0.0685	83.0	13.24%	5074.9	10.54%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-1	-3.966e+00	0.0685	246.0	39.23%	16934.7	35.17%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-1	-3.896e+00	0.0725	23.0	3.67%	1103.3	2.29%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-3.867e+00	0.0737	21.0	3.35%	985.8	2.05%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-3.843e+00	0.0744	39.0	6.22%	2123.3	4.41%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-3.837e+00	0.0744	48.0	7.66%	2717.3	5.64%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-3.771e+00	0.0780	23.0	3.67%	1117.0	2.32%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-3.769e+00	0.0780	78.0	12.44%	4776.4	9.92%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-3.732e+00	0.0790	25.0	3.99%	1245.9	2.59%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-3.683e+00	0.0819	110.0	17.54%	7053.3	14.65%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-1	-3.638e+00	0.0847	38.0	6.06%	2090.2	4.34%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-3.632e+00	0.0847	86.0	13.72%	5368.9	11.15%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-3.545e+00	0.0907	48.0	7.66%	2770.4	5.75%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-1	-3.466e+00	0.0971	4.0	0.64%	90.7	0.19%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-1	-3.427e+00	0.0997	59.0	9.41%	3541.7	7.36%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-3.371e+00	0.1043	108.0	17.22%	7001.8	14.54%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-3.361e+00	0.1043	20.0	3.19%	980.0	2.04%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-3.267e+00	0.1131	26.0	4.15%	1368.7	2.84%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-3.244e+00	0.1144	133.0	21.21%	8846.1	18.37%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-3.223e+00	0.1156	12.0	1.91%	514.6	1.07%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-3.221e+00	0.1156	53.0	8.45%	3174.1	6.59%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-3.207e+00	0.1156	66.0	10.53%	4075.4	8.46%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-3.154e+00	0.1199	23.0	3.67%	1192.1	2.48%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-3.133e+00	0.1211	42.0	6.70%	2444.1	5.08%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-3.111e+00	0.1225	10.0	1.59%	409.2	0.85%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-3.068e+00	0.1266	44.0	7.02%	2592.2	5.38%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-1	-3.014e+00	0.1323	140.0	22.33%	9437.1	19.60%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-2.912e+00	0.1449	129.0	20.57%	8671.0	18.01%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-2.907e+00	0.1449	26.0	4.15%	1420.5	2.95%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1	-2.832e+00	0.1540	90.0	14.35%	5876.0	12.20%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-2.823e+00	0.1540	102.0	16.27%	6742.0	14.00%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-2.747e+00	0.1643	47.0	7.50%	2865.6	5.95%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-2.688e+00	0.1727	31.0	4.94%	1787.4	3.71%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-2.675e+00	0.1733	65.0	10.37%	4141.4	8.60%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-2.648e+00	0.1763	13.0	2.07%	627.8	1.30%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-2.608e+00	0.1817	66.0	10.53%	4230.4	8.79%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-2.535e+00	0.1937	50.0	7.97%	3123.0	6.49%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-2.508e+00	0.1971	10.0	1.59%	459.4	0.95%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-2.490e+00	0.1989	264.0	42.11%	18930.3	39.32%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e-1	-2.487e+00	0.1989	8.0	1.28%	343.7	0.71%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-2.464e+00	0.2006	47.0	7.50%	2931.5	6.09%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-2.453e+00	0.2010	21.0	3.35%	1162.2	2.41%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-2.338e+00	0.2235	41.0	6.54%	2543.5	5.28%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-2.331e+00	0.2235	44.0	7.02%	2754.2	5.72%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-1	-2.327e+00	0.2235	47.0	7.50%	2965.4	6.16%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.279e+00	0.2309	6.0	0.96%	244.9	0.51%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-2.279e+00	0.2309	16.0	2.55%	861.2	1.79%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.256e+00	0.2323	24.0	3.83%	1394.9	2.90%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.247e+00	0.2325	8.0	1.28%	363.3	0.75%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.224e+00	0.2361	36.0	5.74%	2222.4	4.62%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-2.217e+00	0.2361	55.0	8.77%	3560.1	7.39%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.214e+00	0.2361	11.0	1.75%	550.9	1.14%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.213e+00	0.2361	93.0	14.83%	6301.4	13.09%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.202e+00	0.2361	8.0	1.28%	367.1	0.76%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-2.179e+00	0.2371	83.0	13.24%	5587.0	11.60%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-2.133e+00	0.2463	77.0	12.28%	5167.9	10.73%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.084e+00	0.2565	19.0	3.03%	1088.4	2.26%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-2.082e+00	0.2565	5.0	0.80%	201.5	0.42%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.044e+00	0.2629	201.0	32.06%	14401.9	29.91%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.975e+00	0.2797	6.0	0.96%	268.0	0.56%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.969e+00	0.2797	169.0	26.95%	12037.7	25.00%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.925e+00	0.2897	69.0	11.00%	4660.1	9.68%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.924e+00	0.2897	88.0	14.04%	6047.8	12.56%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.918e+00	0.2897	82.0	13.08%	5610.9	11.65%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.914e+00	0.2897	48.0	7.66%	3149.5	6.54%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.853e+00	0.3022	16.0	2.55%	925.4	1.92%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.851e+00	0.3022	31.0	4.94%	1960.4	4.07%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.815e+00	0.3094	25.0	3.99%	1549.5	3.22%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.814e+00	0.3094	14.0	2.23%	797.6	1.66%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.795e+00	0.3112	12.0	1.91%	667.2	1.39%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.778e+00	0.3143	72.0	11.48%	4933.4	10.25%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.766e+00	0.3158	21.0	3.35%	1283.0	2.66%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-1.765e+00	0.3158	39.0	6.22%	2549.5	5.30%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.732e+00	0.3222	14.0	2.23%	810.9	1.68%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.693e+00	0.3325	3.0	0.48%	113.4	0.24%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.682e+00	0.3342	95.0	15.15%	6666.7	13.85%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.678e+00	0.3342	12.0	1.91%	684.3	1.42%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.654e+00	0.3391	135.0	21.53%	9658.6	20.06%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.627e+00	0.3460	132.0	21.05%	9448.1	19.62%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.571e+00	0.3634	19.0	3.03%	1183.7	2.46%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.547e+00	0.3696	15.0	2.39%	910.5	1.89%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.532e+00	0.3728	11.0	1.75%	639.2	1.33%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.523e+00	0.3739	23.0	3.67%	1475.8	3.07%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.511e+00	0.3757	34.0	5.42%	2264.2	4.70%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-1.484e+00	0.3838	59.0	9.41%	4095.5	8.51%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.482e+00	0.3838	25.0	3.99%	1627.7	3.38%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.476e+00	0.3838	45.0	7.18%	3073.5	6.38%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.468e+00	0.3838	15.0	2.39%	925.9	1.92%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.402e+00	0.4061	15.0	2.39%	938.2	1.95%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.356e+00	0.4226	5.0	0.80%	262.1	0.54%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.345e+00	0.4247	7.0	1.12%	396.5	0.82%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.341e+00	0.4247	3.0	0.48%	136.4	0.28%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.293e+00	0.4419	25.0	3.99%	1678.1	3.49%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.276e+00	0.4465	4.0	0.64%	205.2	0.43%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.264e+00	0.4492	7.0	1.12%	407.3	0.85%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.262e+00	0.4492	34.0	5.42%	2343.1	4.87%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.216e+00	0.4656	32.0	5.10%	2212.8	4.60%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.213e+00	0.4656	36.0	5.74%	2507.7	5.21%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.167e+00	0.4836	42.0	6.70%	2968.6	6.17%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.146e+00	0.4907	2.0	0.32%	88.6	0.18%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.123e+00	0.4994	4.0	0.64%	221.4	0.46%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.108e+00	0.5037	18.0	2.87%	1221.2	2.54%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-1.101e+00	0.5043	17.0	2.71%	1150.0	2.39%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.001e+00	0.5545	20.0	3.19%	1399.3	2.91%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.000e+00	0.5545	13.0	2.07%	884.6	1.84%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-9.971e-01	0.5545	14.0	2.23%	958.5	1.99%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-9.853e-01	0.5545	5.0	0.80%	308.9	0.64%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-9.853e-01	0.5545	5.0	0.80%	308.9	0.64%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-9.825e-01	0.5545	1.0	0.16%	36.9	0.08%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-9.592e-01	0.5589	51.0	8.13%	3735.6	7.76%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-9.352e-01	0.5694	112.0	17.86%	8371.7	17.39%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-9.097e-01	0.5809	7.0	1.12%	465.8	0.97%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-8.948e-01	0.5864	9.0	1.44%	615.2	1.28%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-8.767e-01	0.5938	31.0	4.94%	2267.2	4.71%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-8.738e-01	0.5938	7.0	1.12%	472.8	0.98%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-8.635e-01	0.5953	37.0	5.90%	2726.4	5.66%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-8.539e-01	0.5979	7.0	1.12%	476.9	0.99%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-8.246e-01	0.6124	36.0	5.74%	2669.5	5.54%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-8.163e-01	0.6142	15.0	2.39%	1084.2	2.25%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-8.162e-01	0.6142	53.0	8.45%	3965.5	8.24%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-8.119e-01	0.6142	42.0	6.70%	3131.2	6.50%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-8.111e-01	0.6142	5.0	0.80%	336.6	0.70%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-7.873e-01	0.6193	56.0	8.93%	4211.7	8.75%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-7.842e-01	0.6193	11.0	1.75%	792.4	1.65%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-7.511e-01	0.6355	120.0	19.14%	9131.7	18.97%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-7.210e-01	0.6516	13.0	2.07%	963.1	2.00%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-7.090e-01	0.6562	1.0	0.16%	52.8	0.11%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-6.867e-01	0.6676	4.0	0.64%	283.6	0.59%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-6.754e-01	0.6718	60.0	9.57%	4592.5	9.54%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-6.622e-01	0.6773	30.0	4.78%	2293.1	4.76%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-6.358e-01	0.6920	19.0	3.03%	1457.6	3.03%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-6.297e-01	0.6928	28.0	4.47%	2156.5	4.48%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-6.265e-01	0.6928	40.0	6.38%	3085.8	6.41%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-6.147e-01	0.6965	20.0	3.19%	1544.6	3.21%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-6.099e-01	0.6965	9.0	1.44%	690.9	1.44%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-5.827e-01	0.7121	16.0	2.55%	1247.6	2.59%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.801e-01	0.7121	6.0	0.96%	463.1	0.96%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-5.671e-01	0.7164	5.0	0.80%	387.5	0.80%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-5.407e-01	0.7321	1.0	0.16%	67.6	0.14%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-5.181e-01	0.7453	41.0	6.54%	3237.9	6.72%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-5.103e-01	0.7475	15.0	2.39%	1201.5	2.50%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-4.990e-01	0.7525	11.0	1.75%	888.9	1.85%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-4.938e-01	0.7529	53.0	8.45%	4193.2	8.71%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-4.859e-01	0.7554	64.0	10.21%	5058.8	10.51%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-4.723e-01	0.7622	24.0	3.83%	1934.6	4.02%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-4.569e-01	0.7704	2.0	0.32%	165.1	0.34%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-4.244e-01	0.7922	33.0	5.26%	2680.3	5.57%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-3.966e-01	0.8108	34.0	5.42%	2782.4	5.78%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-3.904e-01	0.8108	2.0	0.32%	179.9	0.37%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-3.904e-01	0.8108	2.0	0.32%	179.6	0.37%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-3.841e-01	0.8108	6.0	0.96%	526.7	1.09%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-3.824e-01	0.8108	21.0	3.35%	1754.7	3.64%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-3.617e-01	0.8208	9.0	1.44%	787.3	1.64%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-3.610e-01	0.8208	14.0	2.23%	1200.7	2.49%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-3.423e-01	0.8295	1.0	0.16%	95.6	0.20%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-3.415e-01	0.8295	2.0	0.32%	191.7	0.40%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-3.294e-01	0.8329	24.0	3.83%	2038.0	4.23%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-3.270e-01	0.8329	6.0	0.96%	550.2	1.14%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-3.125e-01	0.8398	2.0	0.32%	199.9	0.42%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.927e-01	0.8528	28.0	4.47%	2395.7	4.98%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-2.403e-01	0.8949	19.0	3.03%	1707.0	3.55%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.270e-01	0.9029	2.0	0.32%	228.3	0.47%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-2.225e-01	0.9032	17.0	2.71%	1557.7	3.24%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-2.031e-01	0.9169	4.0	0.64%	434.7	0.90%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.022e-01	0.9169	5.0	0.80%	528.8	1.10%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.821e-01	0.9285	20.0	3.19%	1856.7	3.86%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-1.813e-01	0.9285	17.0	2.71%	1602.1	3.33%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.808e-01	0.9285	7.0	1.12%	727.7	1.51%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.680e-01	0.9299	7.0	1.12%	738.8	1.53%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.594e-01	0.9341	4.0	0.64%	463.1	0.96%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.549e-01	0.9344	3.0	0.48%	367.6	0.76%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.543e-01	0.9344	31.0	4.94%	2823.0	5.86%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.497e-01	0.9344	7.0	1.12%	755.3	1.57%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.441e-01	0.9344	1.0	0.16%	154.2	0.32%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.306e-01	0.9418	7.0	1.12%	775.5	1.61%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.176e-01	0.9503	2.0	0.32%	288.9	0.60%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.152e-01	0.9503	1.0	0.16%	170.5	0.35%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.100e-01	0.9503	6.0	0.96%	704.1	1.46%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-9.929e-02	0.9562	78.0	12.44%	6825.8	14.18%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-9.234e-02	0.9590	2.0	0.32%	310.9	0.65%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-6.933e-02	0.9775	2.0	0.32%	336.0	0.70%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-5.907e-02	0.9836	1.0	0.16%	219.6	0.46%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-5.448e-02	0.9843	1.0	0.16%	225.9	0.47%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-5.027e-02	0.9843	2.0	0.32%	365.1	0.76%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-5.027e-02	0.9843	2.0	0.32%	365.3	0.76%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-5.026e-02	0.9843	1.0	0.16%	232.0	0.48%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-3.130e-02	0.9917	16.0	2.55%	1849.5	3.84%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.650e-02	0.9926	1.0	0.16%	279.5	0.58%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.652e-02	0.9988	2.0	0.32%	464.5	0.96%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.402e-02	0.9988	11.0	1.75%	1488.5	3.09%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	49.4	0.10%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	43.3	0.09%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	29.2	0.06%
