Information for 13-GCAGAAAAGGGA (Motif 18)


Reverse Opposite:

p-value:1e-8
log p-value:-2.045e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif3.30%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets70.3 +/- 56.2bp
Average Position of motif in Background24.2 +/- 4.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GCAGAAAAGGGA
-CAGATAAGGN-

MA0482.1_Gata4/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCAGAAAAGGGA
NNGAGATAAGA--

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GCAGAAAAGGGA
-NAGATAAGNN-

MA0035.3_Gata1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCAGAAAAGGGA
ANAGATAAGAA-

PB0166.1_Sox12_2/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCAGAAAAGGGA--
AAACAGACAAAGGAAT

MA0083.2_SRF/Jaspar

Match Rank:6
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GCAGAAAAGGGA-
CATGCCCAAATAAGGCAA

MA0037.2_GATA3/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GCAGAAAAGGGA
--AGATAAGA--

Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCAGAAAAGGGA
NBWGATAAGR--

PB0145.1_Mafb_2/Jaspar

Match Rank:9
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GCAGAAAAGGGA
CAATTGCAAAAATAT--

PB0124.1_Gabpa_2/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----GCAGAAAAGGGA
NNNNGGGGGAAGANGG-