Information for 18-TAGGAGTHATTA (Motif 24)


Reverse Opposite:

p-value:1e-7
log p-value:-1.732e+01
Information Content per bp:1.759
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif5.49%
Number of Background Sequences with motif42.8
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets81.2 +/- 37.9bp
Average Position of motif in Background106.9 +/- 69.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0061.1_Hoxb6/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TAGGAGTHATTA----
TATTGGTAATTACCTT

PH0055.1_Hoxa7_2/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TAGGAGTHATTA------
--GTAGTAATTAATGGAA

PH0062.1_Hoxb7/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TAGGAGTHATTA------
--GTAGTAATTAATGCAA

PH0072.1_Hoxc8/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TAGGAGTHATTA----
TTGGGGTAATTAACGT

MF0010.1_Homeobox_class/Jaspar

Match Rank:5
Score:0.63
Offset:4
Orientation:forward strand
Alignment:TAGGAGTHATTA
----AATAATT-

PH0039.1_Mnx1/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TAGGAGTHATTA------
--GTACTAATTAGTGGCG

PH0106.1_Msx1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TAGGAGTHATTA------
--NNATTAATTAGTNGNN

PH0019.1_Dbx2/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TAGGAGTHATTA------
--NAATTAATTAATTNNN

PH0120.1_Nkx6-3/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TAGGAGTHATTA------
-CNNANTAATTAATTNNC

PH0008.1_Barx2/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TAGGAGTHATTA----
NANAANTAATTANTTA