Information for 3-ATCATTARGSKG (Motif 3)


Reverse Opposite:

p-value:1e-12
log p-value:-2.901e+01
Information Content per bp:1.888
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif5.49%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets104.6 +/- 49.3bp
Average Position of motif in Background93.2 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:1
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:ATCATTARGSKG
-YCATTAMC---

PB0176.1_Sox5_2/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ATCATTARGSKG
TATCATAATTAAGGA-

PH0151.1_Pou6f1_1/Jaspar

Match Rank:3
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----ATCATTARGSKG
NNNACCTCATTATCNTN

MA0132.1_Pdx1/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:ATCATTARGSKG
--AATTAG----

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:ATCATTARGSKG
-TAATTAGN---

PH0143.1_Pou2f1/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----ATCATTARGSKG
ATATATTAATTAAGTA-

MF0010.1_Homeobox_class/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ATCATTARGSKG
AATTATT------

PH0152.1_Pou6f1_2/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----ATCATTARGSKG
GCAACCTCATTATNNNN

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:9
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----ATCATTARGSKG
GGTTAAACATTAA----

PH0073.1_Hoxc9/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----ATCATTARGSKG
GGAGGTCATTAATTAT