Information for 15-TCTTAAGAGGCA (Motif 18)


Reverse Opposite:

p-value:1e-8
log p-value:-1.974e+01
Information Content per bp:1.890
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.40%
Number of Background Sequences with motif13.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets94.9 +/- 51.9bp
Average Position of motif in Background81.7 +/- 51.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TCTTAAGAGGCA
-CTYRAGTGSY-

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--TCTTAAGAGGCA---
NTNNTTAAGTGGNTNAN

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TCTTAAGAGGCA
--TTGAGTGSTT

PH0115.1_Nkx2-6/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TCTTAAGAGGCA--
AATNTTAAGTGGNTNN

PH0048.1_Hoxa13/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TCTTAAGAGGCA-
ANATTTTACGAGNNNN

PH0004.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TCTTAAGAGGCA---
NTNNTTAAGTGGTTANN

PH0113.1_Nkx2-4/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TCTTAAGAGGCA--
AATTTCAAGTGGCTTN

MA0063.1_Nkx2-5/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TCTTAAGAGGCA
--TTAATTG---

PH0068.1_Hoxc13/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TCTTAAGAGGCA-
NAATTTTACGAGNTNN

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TCTTAAGAGGCA
-CTTGAGTGGCT