Information for 14-AATCATAAAA (Motif 28)


Reverse Opposite:

p-value:1e-2
log p-value:-5.663e+00
Information Content per bp:1.683
Number of Target Sequences with motif63.0
Percentage of Target Sequences with motif14.65%
Number of Background Sequences with motif5088.6
Percentage of Background Sequences with motif10.38%
Average Position of motif in Targets119.0 +/- 59.5bp
Average Position of motif in Background100.0 +/- 57.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:1
Score:0.76
Offset:1
Orientation:forward strand
Alignment:AATCATAAAA-
-GTCATAAAAN

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.74
Offset:0
Orientation:forward strand
Alignment:AATCATAAAA
NCYAATAAAA

MA0465.1_CDX2/Jaspar

Match Rank:3
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AATCATAAAA
AAGCCATAAAA

PH0064.1_Hoxb9/Jaspar

Match Rank:4
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--AATCATAAAA----
AGAGCCATAAAATTCG

PH0047.1_Hoxa11/Jaspar

Match Rank:5
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---AATCATAAAA---
TAAAGTCGTAAAACAT

PH0065.1_Hoxc10/Jaspar

Match Rank:6
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AATCATAAAA---
TAAAGTCGTAAAACGT

PH0068.1_Hoxc13/Jaspar

Match Rank:7
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AATCATAAAA---
AAAGCTCGTAAAATTT

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AATCATAAAA----
CTACCAATAAAATTCT

PH0066.1_Hoxc11/Jaspar

Match Rank:9
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AATCATAAAA---
TAAAGTCGTAAAATAG

PH0076.1_Hoxd11/Jaspar

Match Rank:10
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AATCATAAAA----
TAAGGTCGTAAAATCCT