Information for 1-CCCTGCCAAC (Motif 4)


Reverse Opposite:

p-value:1e-11
log p-value:-2.542e+01
Information Content per bp:1.699
Number of Target Sequences with motif58.0
Percentage of Target Sequences with motif13.49%
Number of Background Sequences with motif2438.0
Percentage of Background Sequences with motif4.97%
Average Position of motif in Targets101.1 +/- 58.5bp
Average Position of motif in Background100.1 +/- 59.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0161.1_NFIC/Jaspar

Match Rank:1
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:CCCTGCCAAC
---TGCCAA-

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CCCTGCCAAC
--TTGCCAAG

PB0167.1_Sox13_2/Jaspar

Match Rank:3
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----CCCTGCCAAC--
ANNTNCCCACCCANNAC

PB0029.1_Hic1_1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CCCTGCCAAC-----
ACTATGCCAACCTACC

MA0597.1_THAP1/Jaspar

Match Rank:5
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CCCTGCCAAC-
--CTGCCCGCA

PB0164.1_Smad3_2/Jaspar

Match Rank:6
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CCCTGCCAAC---
TACGCCCCGCCACTCTG

MA0155.1_INSM1/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CCCTGCCAAC
CGCCCCCTGACA--

POL003.1_GC-box/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CCCTGCCAAC-
NAGCCCCGCCCCCN

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCCTGCCAAC
CCCCCCCC---

MA0510.1_RFX5/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCCTGCCAAC---
CTCCCTGGCAACAGC