Information for 5-TGCTGCAGAT (Motif 12)


Reverse Opposite:

p-value:1e-2
log p-value:-5.301e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif1.89%
Number of Background Sequences with motif47.6
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets138.8 +/- 29.7bp
Average Position of motif in Background94.0 +/- 61.4bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0522.1_Tcf3/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TGCTGCAGAT---
--NTGCAGCTGTG

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TGCTGCAGAT
NATGTTGCAA--

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TGCTGCAGAT-------
AAGGCCAGATGGTCCGG

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGCTGCAGAT
NGCTN-----

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGCTGCAGAT
TTATGCAAAT

MA0507.1_POU2F2/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TGCTGCAGAT---
ATATGCAAATNNN

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TGCTGCAGAT---
---AACAGATGGC

MA0142.1_Pou5f1::Sox2/Jaspar

Match Rank:8
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----TGCTGCAGAT
CTTTGTTATGCAAAT

MA0461.1_Atoh1/Jaspar

Match Rank:9
Score:0.52
Offset:5
Orientation:forward strand
Alignment:TGCTGCAGAT---
-----CAGATGGC

PB0003.1_Ascl2_1/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-TGCTGCAGAT------
NNNNAGCAGCTGCTGAN