Information for 1-GGTCGCTATT (Motif 4)


Reverse Opposite:

p-value:1e-8
log p-value:-1.868e+01
Information Content per bp:1.894
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif4.72%
Number of Background Sequences with motif29.4
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets105.8 +/- 55.4bp
Average Position of motif in Background94.3 +/- 55.5bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GGTCGCTATT-
AGGTCTCTAACC

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GGTCGCTATT---
NCCGTTGCTANGNGN

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GGTCGCTATT---
NNCGTTGCTATGGNN

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GGTCGCTATT-----
-----CTATTTTTGG

PB0054.1_Rfx3_1/Jaspar

Match Rank:5
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------GGTCGCTATT-------
NTNNNNNGTTGCTANGGNNCANA

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GGTCGCTATT------
----KCTATTTTTRGH

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GGTCGCTATT-
CTGTTGCTAGGS

MA0132.1_Pdx1/Jaspar

Match Rank:8
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GGTCGCTATT-
-----CTAATT

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GGTCGCTATT
AGGTCA-----

MA0158.1_HOXA5/Jaspar

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GGTCGCTATT-
---CACTAATT