Information for 4-GGTTTTCCTAGG (Motif 5)


Reverse Opposite:

p-value:1e-7
log p-value:-1.819e+01
Information Content per bp:1.830
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif4.72%
Number of Background Sequences with motif32.6
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets121.4 +/- 17.6bp
Average Position of motif in Background103.6 +/- 51.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0152.1_NFATC2/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GGTTTTCCTAGG
--TTTTCCA---

MA0101.1_REL/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GGTTTTCCTAGG
GGGGATTTCC----

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GGTTTTCCTAGG
GGGGATTTCC----

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GGTTTTCCTAGG
--HTTTCCCASG

MA0107.1_RELA/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GGTTTTCCTAGG
GGGAATTTCC----

MA0105.3_NFKB1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GGTTTTCCTAGG
GGGAATTTCCC---

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:7
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GGTTTTCCTAGG
NNANTGGTGGTCTTNNN

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:8
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GGTTTTCCTAGG
CGTGGGTGGTCC----

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GGTTTTCCTAGG
NGGGGATTTCCC---

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GGTTTTCCTAGG
-CTGTTCCTGG-