Source.Name	Provider	Material.Type	Term.Source.REF	Characteristics.Organism.	Term.Source.REF.1	Characteristics.Sex.	Term.Source.REF.2	Characteristics.DiseaseState.	Term.Source.REF.3	Comment.OCG.Cohort.	Sample.Name	Material.Type.1	Term.Source.REF.4	Characteristics.OrganismPart.	Term.Source.REF.5	Description	Protocol.REF	Performer	Extract.Name	Material.Type.2	Term.Source.REF.6	Comment.SRA_SAMPLE.	Protocol.REF.1	Performer.1	Extract.Name.1	Comment.LIBRARY_LAYOUT.	Comment.LIBRARY_SOURCE.	Comment.LIBRARY_STRATEGY.	Comment.LIBRARY_SELECTION.	Comment.LIBRARY_NAME.	Comment.SRA_EXPERIMENT.	Description.1	Protocol.REF.2	Performer.2	Date	Assay.Name	Technology.Type	Term.Source.REF.7	Comment.SPOT_LENGTH.	Protocol.REF.3	Parameter.Value.Software.Versions.	Protocol.REF.4	Derived.Array.Data.File	Comment.SRA_RUN.	Comment.SRA_FILE_URI.	Comment.OCG.Data.Level.	Comment.ASSEMBLY_NAME.	Protocol.REF.5	Derived.Array.Data.File.1	Comment.OCG.Data.Level..1
TARGET-52-PADYCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADYCE-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYCE-01A-02D	DNA	EFO	SRS924873	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYCE-01A-02D A48148 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48148	SRX1013101	Input DNA control ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PADYCE-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PADYCE-01A-02D A48148 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C671NANXX_6_GTCCGC.bam	SRR2001558	@dbgap@:reads/SRP012005/SRS924873/SRX1013101/SRR2001558/SRR2001558.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PADYCE-01A-02D.ChIP_2.0_Control_Kidney.bw	3
TARGET-52-PADYCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADYCE-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYCE-01A-02D	DNA	EFO	SRS924873	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYCE-01A-02D A48146 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48146	SRX1013145	H3K4me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PADYCE-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PADYCE-01A-02D A48146 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C671NANXX_6_TCCCGA.bam	SRR2001545	@dbgap@:reads/SRP012005/SRS924873/SRX1013145/SRR2001545/SRR2001545.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PADYCE-01A-02D.ChIP_2.0_H3K4me3_Kidney.bw	3
TARGET-52-PADYCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADYCE-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYCE-01A-02D	DNA	EFO	SRS924873	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYCE-01A-02D A48147 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48147	SRX1013165	H3K27me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PADYCE-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PADYCE-01A-02D A48147 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C671NANXX_6_TTCGAA.bam	SRR2001574	@dbgap@:reads/SRP012005/SRS924873/SRX1013165/SRR2001574/SRR2001574.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PADYCE-01A-02D.ChIP_2.0_H3K27me3_Kidney.bw	3
TARGET-52-PADYCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADYCE-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYCE-01A-02D	DNA	EFO	SRS924873	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYCE-01A-02D A61030 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A61030	SRX2796004	H3K27ac ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PADYCE-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-07-05	TARGET-52-PADYCE-01A-02D A61030 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C9EWTANXX_3_CTCAGA_reheadered.bam	SRR5575677	@dbgap@:reads/SRP012005/SRS924873/SRX2796004/SRR5575677/SRR5575677.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PADYCE-01A-02D.ChIP_2.1_H3K27ac_Kidney.bw	3
TARGET-52-PAJLRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJLRA-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLRA-01A-02D	DNA	EFO	SRS924885	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLRA-01A-02D A48107 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48107	SRX1013126	H3K4me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAJLRA-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAJLRA-01A-02D A48107 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66W1ANXX_7_CCACGC.bam	SRR2001565	@dbgap@:reads/SRP012005/SRS924885/SRX1013126/SRR2001565/SRR2001565.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAJLRA-01A-02D.ChIP_2.0_H3K4me3_Kidney-Left.bw	3
TARGET-52-PAJLRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJLRA-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLRA-01A-02D	DNA	EFO	SRS924885	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLRA-01A-02D A48108 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48108	SRX1013130	H3K27me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAJLRA-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAJLRA-01A-02D A48108 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66W1ANXX_7_CTATAC.bam	SRR2001542	@dbgap@:reads/SRP012005/SRS924885/SRX1013130/SRR2001542/SRR2001542.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAJLRA-01A-02D.ChIP_2.0_H3K27me3_Kidney-Left.bw	3
TARGET-52-PAJLRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJLRA-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLRA-01A-02D	DNA	EFO	SRS924885	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLRA-01A-02D A48109 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48109	SRX1013141	Input DNA control ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAJLRA-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAJLRA-01A-02D A48109 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66W1ANXX_7_GCAAGG.bam	SRR2001557	@dbgap@:reads/SRP012005/SRS924885/SRX1013141/SRR2001557/SRR2001557.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAJLRA-01A-02D.ChIP_2.0_Control_Kidney-Left.bw	3
TARGET-52-PAJLRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJLRA-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLRA-01A-02D	DNA	EFO	SRS924885	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLRA-01A-02D A61017 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A61017	SRX2796008	H3K27ac ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAJLRA-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-07-05	TARGET-52-PAJLRA-01A-02D A61017 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C9EWTANXX_1_CCACGC_reheadered.bam	SRR5575680	@dbgap@:reads/SRP012005/SRS924885/SRX2796008/SRR5575680/SRR5575680.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAJLRA-01A-02D.ChIP_2.1_H3K27ac_Kidney-Left.bw	3
TARGET-52-PAJPHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJPHJ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJPHJ-01A-02D	DNA	EFO	SRS924878	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJPHJ-01A-02D A48105 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48105	SRX1013146	H3K27me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAJPHJ-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAJPHJ-01A-02D A48105 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66W1ANXX_6_AGGCCG.bam	SRR2001529	@dbgap@:reads/SRP012005/SRS924878/SRX1013146/SRR2001529/SRR2001529.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAJPHJ-01A-02D.ChIP_2.0_H3K27me3_Kidney-Left.bw	3
TARGET-52-PAJPHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJPHJ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJPHJ-01A-02D	DNA	EFO	SRS924878	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJPHJ-01A-02D A48106 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48106	SRX1013150	Input DNA control ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAJPHJ-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAJPHJ-01A-02D A48106 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66W1ANXX_6_CAACTA.bam	SRR2001518	@dbgap@:reads/SRP012005/SRS924878/SRX1013150/SRR2001518/SRR2001518.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAJPHJ-01A-02D.ChIP_2.0_Control_Kidney-Left.bw	3
TARGET-52-PAJPHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJPHJ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJPHJ-01A-02D	DNA	EFO	SRS924878	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJPHJ-01A-02D A48104 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48104	SRX1013159	H3K4me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAJPHJ-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAJPHJ-01A-02D A48104 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66W1ANXX_6_ACCGGC.bam	SRR2001568	@dbgap@:reads/SRP012005/SRS924878/SRX1013159/SRR2001568/SRR2001568.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAJPHJ-01A-02D.ChIP_2.0_H3K4me3_Kidney-Left.bw	3
TARGET-52-PAJPHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJPHJ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJPHJ-01A-02D	DNA	EFO	SRS924878	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJPHJ-01A-02D A61016 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A61016	SRX2795994	H3K27ac ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAJPHJ-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-07-05	TARGET-52-PAJPHJ-01A-02D A61016 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C9EWTANXX_1_CAACTA_reheadered.bam	SRR5575676	@dbgap@:reads/SRP012005/SRS924878/SRX2795994/SRR5575676/SRR5575676.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAJPHJ-01A-02D.ChIP_2.1_H3K27ac_Kidney-Left.bw	3
TARGET-52-PAKLYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKLYZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKLYZ-01A-02D	DNA	EFO	SRS924867	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKLYZ-01A-02D A48139 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48139	SRX1013128	Input DNA control ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAKLYZ-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAKLYZ-01A-02D A48139 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C671NANXX_3_AAGGAC.bam	SRR2001580	@dbgap@:reads/SRP012005/SRS924867/SRX1013128/SRR2001580/SRR2001580.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAKLYZ-01A-02D.ChIP_2.0_Control_Kidney-Left.bw	3
TARGET-52-PAKLYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKLYZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKLYZ-01A-02D	DNA	EFO	SRS924867	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKLYZ-01A-02D A48138 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48138	SRX1013161	H3K27me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAKLYZ-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAKLYZ-01A-02D A48138 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C671NANXX_3_AAACAT.bam	SRR2001535	@dbgap@:reads/SRP012005/SRS924867/SRX1013161/SRR2001535/SRR2001535.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAKLYZ-01A-02D.ChIP_2.0_H3K27me3_Kidney-Left.bw	3
TARGET-52-PAKLYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKLYZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKLYZ-01A-02D	DNA	EFO	SRS924867	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKLYZ-01A-02D A48137 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48137	SRX1013171	H3K4me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAKLYZ-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAKLYZ-01A-02D A48137 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C671NANXX_3_ACAGTG.bam	SRR2001533	@dbgap@:reads/SRP012005/SRS924867/SRX1013171/SRR2001533/SRR2001533.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAKLYZ-01A-02D.ChIP_2.0_H3K4me3_Kidney-Left.bw	3
TARGET-52-PAKLYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKLYZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKLYZ-01A-02D	DNA	EFO	SRS924867	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKLYZ-01A-02D A61027 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A61027	SRX2796000	H3K27ac ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAKLYZ-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-07-05	TARGET-52-PAKLYZ-01A-02D A61027 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C9EWTANXX_3_ATAATT_reheadered.bam	SRR5575670	@dbgap@:reads/SRP012005/SRS924867/SRX2796000/SRR5575670/SRR5575670.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAKLYZ-01A-02D.ChIP_2.1_H3K27ac_Kidney-Left.bw	3
TARGET-52-PAKTCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKTCT-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKTCT-01A-02D	DNA	EFO	SRS924889	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKTCT-01A-02D A48140 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48140	SRX1013095	H3K4me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAKTCT-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAKTCT-01A-02D A48140 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C671NANXX_4_ACTGAT.bam	SRR2001571	@dbgap@:reads/SRP012005/SRS924889/SRX1013095/SRR2001571/SRR2001571.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAKTCT-01A-02D.ChIP_2.0_H3K4me3_Kidney-Right.bw	3
TARGET-52-PAKTCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKTCT-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKTCT-01A-02D	DNA	EFO	SRS924889	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKTCT-01A-02D A48142 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48142	SRX1013115	Input DNA control ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAKTCT-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAKTCT-01A-02D A48142 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C671NANXX_4_CACTCA.bam	SRR2001538	@dbgap@:reads/SRP012005/SRS924889/SRX1013115/SRR2001538/SRR2001538.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAKTCT-01A-02D.ChIP_2.0_Control_Kidney-Right.bw	3
TARGET-52-PAKTCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKTCT-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKTCT-01A-02D	DNA	EFO	SRS924889	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKTCT-01A-02D A48141 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48141	SRX1013136	H3K27me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAKTCT-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAKTCT-01A-02D A48141 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C671NANXX_4_ATCCTA.bam	SRR2001585	@dbgap@:reads/SRP012005/SRS924889/SRX1013136/SRR2001585/SRR2001585.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAKTCT-01A-02D.ChIP_2.0_H3K27me3_Kidney-Right.bw	3
TARGET-52-PAKTCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKTCT-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKTCT-01A-02D	DNA	EFO	SRS924889	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKTCT-01A-02D A61028 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A61028	SRX2796032	H3K27ac ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAKTCT-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-07-05	TARGET-52-PAKTCT-01A-02D A61028 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C9EWTANXX_3_CACCGG_reheadered.bam	SRR5575681	@dbgap@:reads/SRP012005/SRS924889/SRX2796032/SRR5575681/SRR5575681.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAKTCT-01A-02D.ChIP_2.1_H3K27ac_Kidney-Right.bw	3
TARGET-52-PAREWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAREWI-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAREWI-01A-03D	DNA	EFO	SRS924880	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAREWI-01A-03D A48143 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48143	SRX1013123	H3K4me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAREWI-01A-03D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAREWI-01A-03D A48143 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C671NANXX_5_CCGCAA.bam	SRR2001534	@dbgap@:reads/SRP012005/SRS924880/SRX1013123/SRR2001534/SRR2001534.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAREWI-01A-03D.ChIP_2.0_H3K4me3_Kidney-Left.bw	3
TARGET-52-PAREWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAREWI-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAREWI-01A-03D	DNA	EFO	SRS924880	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAREWI-01A-03D A48145 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48145	SRX1013148	Input DNA control ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAREWI-01A-03D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAREWI-01A-03D A48145 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C671NANXX_5_GCCTTA.bam	SRR2001527	@dbgap@:reads/SRP012005/SRS924880/SRX1013148/SRR2001527/SRR2001527.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAREWI-01A-03D.ChIP_2.0_Control_Kidney-Left.bw	3
TARGET-52-PAREWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAREWI-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAREWI-01A-03D	DNA	EFO	SRS924880	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAREWI-01A-03D A48144 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48144	SRX1013157	H3K27me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAREWI-01A-03D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAREWI-01A-03D A48144 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C671NANXX_5_GAAACC.bam	SRR2001596	@dbgap@:reads/SRP012005/SRS924880/SRX1013157/SRR2001596/SRR2001596.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAREWI-01A-03D.ChIP_2.0_H3K27me3_Kidney-Left.bw	3
TARGET-52-PARIRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARIRN-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARIRN-01A-02D	DNA	EFO	SRS634401	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARIRN-01A-02D A33885 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33885	SRX590043	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PARIRN-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PARIRN-01A-02D A33885 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_1_TAGCTT.bam	SRR1378438	@dbgap@:reads/SRP012005/SRS634401/SRX590043/SRR1378438/SRR1378438.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PARIRN-01A-02D.SLX-CHIP_Control_Kidney.bw	3
TARGET-52-PARIRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARIRN-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARIRN-01A-02D	DNA	EFO	SRS634401	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARIRN-01A-02D A33881 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33881	SRX590076	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PARIRN-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PARIRN-01A-02D A33881 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_1_TAATCG.bam	SRR1378458	@dbgap@:reads/SRP012005/SRS634401/SRX590076/SRR1378458/SRR1378458.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PARIRN-01A-02D.SLX-CHIP_H3K9me3_Kidney.bw	3
TARGET-52-PARIRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARIRN-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARIRN-01A-02D	DNA	EFO	SRS634401	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARIRN-01A-02D A33879 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33879	SRX590085	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PARIRN-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PARIRN-01A-02D A33879 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_1_CTAGCT.bam	SRR1378426	@dbgap@:reads/SRP012005/SRS634401/SRX590085/SRR1378426/SRR1378426.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PARIRN-01A-02D.SLX-CHIP_H3K4me1_Kidney.bw	3
TARGET-52-PARIRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARIRN-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARIRN-01A-02D	DNA	EFO	SRS634401	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARIRN-01A-02D A33882 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33882	SRX590095	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PARIRN-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PARIRN-01A-02D A33882 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_1_TGAATG.bam	SRR1378375	@dbgap@:reads/SRP012005/SRS634401/SRX590095/SRR1378375/SRR1378375.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PARIRN-01A-02D.SLX-CHIP_H3K27me3_Kidney.bw	3
TARGET-52-PARIRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARIRN-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARIRN-01A-02D	DNA	EFO	SRS634401	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARIRN-01A-02D A33884 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33884	SRX590106	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PARIRN-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PARIRN-01A-02D A33884 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_1_CGATGT.bam	SRR1378420	@dbgap@:reads/SRP012005/SRS634401/SRX590106/SRR1378420/SRR1378420.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PARIRN-01A-02D.SLX-CHIP_H3K27ac_Kidney.bw	3
TARGET-52-PARIRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARIRN-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARIRN-01A-02D	DNA	EFO	SRS634401	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARIRN-01A-02D A33883 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33883	SRX590108	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PARIRN-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PARIRN-01A-02D A33883 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_1_AGTTCC.bam	SRR1378430	@dbgap@:reads/SRP012005/SRS634401/SRX590108/SRR1378430/SRR1378430.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PARIRN-01A-02D.SLX-CHIP_H3K36me3_Kidney.bw	3
TARGET-52-PARIRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARIRN-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARIRN-01A-02D	DNA	EFO	SRS634401	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARIRN-01A-02D A33880 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33880	SRX590122	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PARIRN-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PARIRN-01A-02D A33880 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_1_GATGCT.bam	SRR1378447	@dbgap@:reads/SRP012005/SRS634401/SRX590122/SRR1378447/SRR1378447.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PARIRN-01A-02D.SLX-CHIP_H3K4me3_Kidney.bw	3
TARGET-52-PARUGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARUGK-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARUGK-01A-02D	DNA	EFO	SRS924891	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARUGK-01A-02D A48079 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48079	SRX1013094	Input DNA Control ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PARUGK-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-06	TARGET-52-PARUGK-01A-02D A48079 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C6JG9ANXX_3_AACCCC.bam	SRR2001579	@dbgap@:reads/SRP012005/SRS924891/SRX1013094/SRR2001579/SRR2001579.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PARUGK-01A-02D.ChIP_2.0_Control_Kidney.bw	3
TARGET-52-PARUGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARUGK-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARUGK-01A-02D	DNA	EFO	SRS924891	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARUGK-01A-02D A48077 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48077	SRX1013106	H3K4me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PARUGK-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-06	TARGET-52-PARUGK-01A-02D A48077 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C6JG9ANXX_3_ATCACG.bam	SRR2001563	@dbgap@:reads/SRP012005/SRS924891/SRX1013106/SRR2001563/SRR2001563.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PARUGK-01A-02D.ChIP_2.0_H3K4me3_Kidney.bw	3
TARGET-52-PARUGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARUGK-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARUGK-01A-02D	DNA	EFO	SRS924891	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARUGK-01A-02D A48078 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48078	SRX1013113	H3K27me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PARUGK-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-06	TARGET-52-PARUGK-01A-02D A48078 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C6JG9ANXX_3_GATCAG.bam	SRR2001532	@dbgap@:reads/SRP012005/SRS924891/SRX1013113/SRR2001532/SRR2001532.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PARUGK-01A-02D.ChIP_2.0_H3K27me3_Kidney.bw	3
TARGET-52-PARUGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARUGK-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARUGK-01A-02D	DNA	EFO	SRS924891	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARUGK-01A-02D A61006 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A61006	SRX2795990	H3K27ac ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PARUGK-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-52-PARUGK-01A-02D A61006 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C9FD6ANXX_8_CTAGCT_reheadered.bam	SRR5575667	@dbgap@:reads/SRP012005/SRS924891/SRX2795990/SRR5575667/SRR5575667.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PARUGK-01A-02D.ChIP_2.1_H3K27ac_Kidney.bw	3
TARGET-52-PARZBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARZBI-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZBI-01A-03D	DNA	EFO	SRS924883	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZBI-01A-03D A48082 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48082	SRX1013114	Input DNA Control ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PARZBI-01A-03D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-06	TARGET-52-PARZBI-01A-03D A48082 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C6JG9ANXX_4_CAAAAG.bam	SRR2001550	@dbgap@:reads/SRP012005/SRS924883/SRX1013114/SRR2001550/SRR2001550.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PARZBI-01A-03D.ChIP_2.0_Control_Kidney.bw	3
TARGET-52-PARZBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARZBI-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZBI-01A-03D	DNA	EFO	SRS924883	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZBI-01A-03D A48081 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48081	SRX1013133	H3K27me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PARZBI-01A-03D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-06	TARGET-52-PARZBI-01A-03D A48081 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C6JG9ANXX_4_AGCGCT.bam	SRR2001567	@dbgap@:reads/SRP012005/SRS924883/SRX1013133/SRR2001567/SRR2001567.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PARZBI-01A-03D.ChIP_2.0_H3K27me3_Kidney.bw	3
TARGET-52-PARZBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARZBI-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZBI-01A-03D	DNA	EFO	SRS924883	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZBI-01A-03D A48080 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48080	SRX1013147	H3K4me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PARZBI-01A-03D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-06	TARGET-52-PARZBI-01A-03D A48080 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C6JG9ANXX_4_ACCCAG.bam	SRR2001525	@dbgap@:reads/SRP012005/SRS924883/SRX1013147/SRR2001525/SRR2001525.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PARZBI-01A-03D.ChIP_2.0_H3K4me3_Kidney.bw	3
TARGET-52-PARZBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARZBI-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZBI-01A-03D	DNA	EFO	SRS924883	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZBI-01A-03D A61007 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A61007	SRX2796012	H3K27ac ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PARZBI-01A-03D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-52-PARZBI-01A-03D A61007 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C9FD6ANXX_8_GATGCT_reheadered.bam	SRR5575687	@dbgap@:reads/SRP012005/SRS924883/SRX2796012/SRR5575687/SRR5575687.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PARZBI-01A-03D.ChIP_2.1_H3K27ac_Kidney.bw	3
TARGET-52-PARZRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARZRH-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZRH-01A-03D	DNA	EFO	SRS924884	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZRH-01A-03D A48131 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48131	SRX1013103	H3K4me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PARZRH-01A-03D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PARZRH-01A-03D A48131 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66VNANXX_7_GAGTGG.bam	SRR2001588	@dbgap@:reads/SRP012005/SRS924884/SRX1013103/SRR2001588/SRR2001588.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PARZRH-01A-03D.ChIP_2.0_H3K4me3_Kidney-Right.bw	3
TARGET-52-PARZRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARZRH-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZRH-01A-03D	DNA	EFO	SRS924884	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZRH-01A-03D A48132 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48132	SRX1013120	H3K27me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PARZRH-01A-03D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PARZRH-01A-03D A48132 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66VNANXX_7_CTGCTG.bam	SRR2001578	@dbgap@:reads/SRP012005/SRS924884/SRX1013120/SRR2001578/SRR2001578.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PARZRH-01A-03D.ChIP_2.0_H3K27me3_Kidney-Right.bw	3
TARGET-52-PARZRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARZRH-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZRH-01A-03D	DNA	EFO	SRS924884	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZRH-01A-03D A48133 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48133	SRX1013142	Input DNA control ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PARZRH-01A-03D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PARZRH-01A-03D A48133 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66VNANXX_7_GCCGCG.bam	SRR2001546	@dbgap@:reads/SRP012005/SRS924884/SRX1013142/SRR2001546/SRR2001546.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PARZRH-01A-03D.ChIP_2.0_Control_Kidney-Right.bw	3
TARGET-52-PARZRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARZRH-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZRH-01A-03D	DNA	EFO	SRS924884	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZRH-01A-03D A61025 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A61025	SRX2796028	H3K27ac ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PARZRH-01A-03D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-07-05	TARGET-52-PARZRH-01A-03D A61025 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C9EWTANXX_2_AAGACT_reheadered.bam	SRR5575678	@dbgap@:reads/SRP012005/SRS924884/SRX2796028/SRR5575678/SRR5575678.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PARZRH-01A-03D.ChIP_2.1_H3K27ac_Kidney-Right.bw	3
TARGET-52-PASABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASABD-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASABD-01A-02D	DNA	EFO	SRS924869	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASABD-01A-02D A48085 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48085	SRX1013124	Input DNA Control ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASABD-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-06	TARGET-52-PASABD-01A-02D A48085 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C6JG9ANXX_5_GATGCT.bam	SRR2001522	@dbgap@:reads/SRP012005/SRS924869/SRX1013124/SRR2001522/SRR2001522.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASABD-01A-02D.ChIP_2.0_Control_Kidney.bw	3
TARGET-52-PASABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASABD-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASABD-01A-02D	DNA	EFO	SRS924869	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASABD-01A-02D A48084 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48084	SRX1013156	H3K27me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASABD-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-06	TARGET-52-PASABD-01A-02D A48084 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C6JG9ANXX_5_CTAGCT.bam	SRR2001524	@dbgap@:reads/SRP012005/SRS924869/SRX1013156/SRR2001524/SRR2001524.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASABD-01A-02D.ChIP_2.0_H3K27me3_Kidney.bw	3
TARGET-52-PASABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASABD-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASABD-01A-02D	DNA	EFO	SRS924869	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASABD-01A-02D A48083 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48083	SRX1013168	H3K4me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASABD-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-06	TARGET-52-PASABD-01A-02D A48083 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C6JG9ANXX_5_CCAACA.bam	SRR2001566	@dbgap@:reads/SRP012005/SRS924869/SRX1013168/SRR2001566/SRR2001566.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASABD-01A-02D.ChIP_2.0_H3K4me3_Kidney.bw	3
TARGET-52-PASABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASABD-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASABD-01A-02D	DNA	EFO	SRS924869	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASABD-01A-02D A61008 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A61008	SRX2796016	H3K27ac ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASABD-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-52-PASABD-01A-02D A61008 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C9FD6ANXX_8_TAATCG_reheadered.bam	SRR5575671	@dbgap@:reads/SRP012005/SRS924869/SRX2796016/SRR5575671/SRR5575671.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASABD-01A-02D.ChIP_2.1_H3K27ac_Kidney.bw	3
TARGET-52-PASAMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASAMZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASAMZ-01A-02D	DNA	EFO	SRS924871	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASAMZ-01A-02D A48110 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48110	SRX1013125	H3K4me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASAMZ-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PASAMZ-01A-02D A48110 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66W1ANXX_8_TACAGC.bam	SRR2001531	@dbgap@:reads/SRP012005/SRS924871/SRX1013125/SRR2001531/SRR2001531.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASAMZ-01A-02D.ChIP_2.0_H3K4me3_Soft_Tissue.bw	3
TARGET-52-PASAMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASAMZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASAMZ-01A-02D	DNA	EFO	SRS924871	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASAMZ-01A-02D A48111 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48111	SRX1013153	H3K27me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASAMZ-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PASAMZ-01A-02D A48111 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66W1ANXX_8_TGCCAT.bam	SRR2001569	@dbgap@:reads/SRP012005/SRS924871/SRX1013153/SRR2001569/SRR2001569.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASAMZ-01A-02D.ChIP_2.0_H3K27me3_Soft_Tissue.bw	3
TARGET-52-PASAMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASAMZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASAMZ-01A-02D	DNA	EFO	SRS924871	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASAMZ-01A-02D A48112 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48112	SRX1013167	Input DNA control ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASAMZ-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PASAMZ-01A-02D A48112 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66W1ANXX_8_ATGTCA.bam	SRR2001576	@dbgap@:reads/SRP012005/SRS924871/SRX1013167/SRR2001576/SRR2001576.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASAMZ-01A-02D.ChIP_2.0_Control_Soft_Tissue.bw	3
TARGET-52-PASAMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASAMZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASAMZ-01A-02D	DNA	EFO	SRS924871	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASAMZ-01A-02D A61018 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A61018	SRX2796034	H3K27ac ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASAMZ-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-07-05	TARGET-52-PASAMZ-01A-02D A61018 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C9EWTANXX_1_CTATAC_reheadered.bam	SRR5575669	@dbgap@:reads/SRP012005/SRS924871/SRX2796034/SRR5575669/SRR5575669.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASAMZ-01A-02D.ChIP_2.1_H3K27ac_Soft_Tissue.bw	3
TARGET-52-PASGCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGCL-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGCL-01A-03D	DNA	EFO	SRS924887	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGCL-01A-03D A48101 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48101	SRX1013116	H3K4me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASGCL-01A-03D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PASGCL-01A-03D A48101 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66W1ANXX_5_CGATGT.bam	SRR2001540	@dbgap@:reads/SRP012005/SRS924887/SRX1013116/SRR2001540/SRR2001540.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASGCL-01A-03D.ChIP_2.0_H3K4me3_Kidney-Left.bw	3
TARGET-52-PASGCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGCL-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGCL-01A-03D	DNA	EFO	SRS924887	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGCL-01A-03D A48103 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48103	SRX1013129	Input DNA control ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASGCL-01A-03D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PASGCL-01A-03D A48103 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66W1ANXX_5_AACTTG.bam	SRR2001520	@dbgap@:reads/SRP012005/SRS924887/SRX1013129/SRR2001520/SRR2001520.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASGCL-01A-03D.ChIP_2.0_Control_Kidney-Left.bw	3
TARGET-52-PASGCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGCL-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGCL-01A-03D	DNA	EFO	SRS924887	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGCL-01A-03D A48102 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48102	SRX1013140	H3K27me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASGCL-01A-03D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PASGCL-01A-03D A48102 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66W1ANXX_5_TAGCTT.bam	SRR2001556	@dbgap@:reads/SRP012005/SRS924887/SRX1013140/SRR2001556/SRR2001556.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASGCL-01A-03D.ChIP_2.0_H3K27me3_Kidney-Left.bw	3
TARGET-52-PASGCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGCL-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGCL-01A-03D	DNA	EFO	SRS924887	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGCL-01A-03D A61015 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A61015	SRX2796024	H3K27ac ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASGCL-01A-03D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-07-05	TARGET-52-PASGCL-01A-03D A61015 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C9EWTANXX_1_AGGCCG_reheadered.bam	SRR5575672	@dbgap@:reads/SRP012005/SRS924887/SRX2796024/SRR5575672/SRR5575672.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASGCL-01A-03D.ChIP_2.1_H3K27ac_Kidney-Left.bw	3
TARGET-52-PASGGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGGN-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGGN-01A-02D	DNA	EFO	SRS924876	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGGN-01A-02D A48113 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48113	SRX1013131	H3K4me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASGGN-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PASGGN-01A-02D A48113 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66VNANXX_1_TTAGGC.bam	SRR2001551	@dbgap@:reads/SRP012005/SRS924876/SRX1013131/SRR2001551/SRR2001551.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASGGN-01A-02D.ChIP_2.0_H3K4me3_Kidney-Right.bw	3
TARGET-52-PASGGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGGN-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGGN-01A-02D	DNA	EFO	SRS924876	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGGN-01A-02D A48115 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48115	SRX1013149	Input DNA control ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASGGN-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PASGGN-01A-02D A48115 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66VNANXX_1_AAGACT.bam	SRR2001528	@dbgap@:reads/SRP012005/SRS924876/SRX1013149/SRR2001528/SRR2001528.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASGGN-01A-02D.ChIP_2.0_Control_Kidney-Right.bw	3
TARGET-52-PASGGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGGN-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGGN-01A-02D	DNA	EFO	SRS924876	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGGN-01A-02D A48114 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48114	SRX1013162	H3K27me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASGGN-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PASGGN-01A-02D A48114 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66VNANXX_1_GGCTAC.bam	SRR2001544	@dbgap@:reads/SRP012005/SRS924876/SRX1013162/SRR2001544/SRR2001544.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASGGN-01A-02D.ChIP_2.0_H3K27me3_Kidney-Right.bw	3
TARGET-52-PASGGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGGN-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGGN-01A-02D	DNA	EFO	SRS924876	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGGN-01A-02D A61019 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A61019	SRX2795988	H3K27ac ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASGGN-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-07-05	TARGET-52-PASGGN-01A-02D A61019 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C9EWTANXX_1_GCAAGG_reheadered.bam	SRR5575675	@dbgap@:reads/SRP012005/SRS924876/SRX2795988/SRR5575675/SRR5575675.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASGGN-01A-02D.ChIP_2.1_H3K27ac_Kidney-Right.bw	3
TARGET-52-PASILR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASILR-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASILR-01A-02D	DNA	EFO	SRS924879	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASILR-01A-02D A48118 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48118	SRX1013099	Input DNA control ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASILR-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PASILR-01A-02D A48118 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66VNANXX_2_CACCGG.bam	SRR2001537	@dbgap@:reads/SRP012005/SRS924879/SRX1013099/SRR2001537/SRR2001537.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASILR-01A-02D.ChIP_2.0_Control_Kidney-Left.bw	3
TARGET-52-PASILR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASILR-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASILR-01A-02D	DNA	EFO	SRS924879	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASILR-01A-02D A48116 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48116	SRX1013100	H3K4me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASILR-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PASILR-01A-02D A48116 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66VNANXX_2_ACGATA.bam	SRR2001583	@dbgap@:reads/SRP012005/SRS924879/SRX1013100/SRR2001583/SRR2001583.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASILR-01A-02D.ChIP_2.0_H3K4me3_Kidney-Left.bw	3
TARGET-52-PASILR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASILR-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASILR-01A-02D	DNA	EFO	SRS924879	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASILR-01A-02D A48117 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48117	SRX1013158	H3K27me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASILR-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PASILR-01A-02D A48117 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66VNANXX_2_ATAATT.bam	SRR2001519	@dbgap@:reads/SRP012005/SRS924879/SRX1013158/SRR2001519/SRR2001519.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASILR-01A-02D.ChIP_2.0_H3K27me3_Kidney-Left.bw	3
TARGET-52-PASILR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASILR-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASILR-01A-02D	DNA	EFO	SRS924879	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASILR-01A-02D A61020 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A61020	SRX2796026	H3K27ac ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASILR-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-07-05	TARGET-52-PASILR-01A-02D A61020 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C9EWTANXX_2_TACAGC_reheadered.bam	SRR5575665	@dbgap@:reads/SRP012005/SRS924879/SRX2796026/SRR5575665/SRR5575665.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASILR-01A-02D.ChIP_2.1_H3K27ac_Kidney-Left.bw	3
TARGET-52-PASNED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASNED-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASNED-01A-02D	DNA	EFO	SRS924870	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASNED-01A-02D A48134 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48134	SRX1013096	H3K4me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASNED-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PASNED-01A-02D A48134 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66VNANXX_8_TCATTC.bam	SRR2001570	@dbgap@:reads/SRP012005/SRS924870/SRX1013096/SRR2001570/SRR2001570.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASNED-01A-02D.ChIP_2.0_H3K4me3_Kidney-Right.bw	3
TARGET-52-PASNED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASNED-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASNED-01A-02D	DNA	EFO	SRS924870	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASNED-01A-02D A48136 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48136	SRX1013097	Input DNA control ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASNED-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PASNED-01A-02D A48136 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66VNANXX_8_GTAGAG.bam	SRR2001581	@dbgap@:reads/SRP012005/SRS924870/SRX1013097/SRR2001581/SRR2001581.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASNED-01A-02D.ChIP_2.0_Control_Kidney-Right.bw	3
TARGET-52-PASNED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASNED-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASNED-01A-02D	DNA	EFO	SRS924870	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASNED-01A-02D A48135 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48135	SRX1013169	H3K27me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASNED-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PASNED-01A-02D A48135 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66VNANXX_8_TGGCGC.bam	SRR2001539	@dbgap@:reads/SRP012005/SRS924870/SRX1013169/SRR2001539/SRR2001539.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASNED-01A-02D.ChIP_2.0_H3K27me3_Kidney-Right.bw	3
TARGET-52-PASNED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASNED-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASNED-01A-02D	DNA	EFO	SRS924870	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASNED-01A-02D A61026 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A61026	SRX2795998	H3K27ac ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASNED-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-07-05	TARGET-52-PASNED-01A-02D A61026 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C9EWTANXX_3_ACGATA_reheadered.bam	SRR5575679	@dbgap@:reads/SRP012005/SRS924870/SRX2795998/SRR5575679/SRR5575679.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASNED-01A-02D.ChIP_2.1_H3K27ac_Kidney-Right.bw	3
TARGET-52-PASRHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASRHU-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASRHU-01A-03D	DNA	EFO	SRS634403	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASRHU-01A-03D A33886 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33886	SRX590045	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PASRHU-01A-03D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-09	TARGET-52-PASRHU-01A-03D A33886 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3RDAACXX_3_AACTTG.bam	SRR1378378	@dbgap@:reads/SRP012005/SRS634403/SRX590045/SRR1378378/SRR1378378.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASRHU-01A-03D.SLX-CHIP_H3K4me1_Kidney.bw	3
TARGET-52-PASRHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASRHU-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASRHU-01A-03D	DNA	EFO	SRS634403	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASRHU-01A-03D A33890 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33890	SRX590073	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PASRHU-01A-03D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-09	TARGET-52-PASRHU-01A-03D A33890 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3RDAACXX_3_CCACGC.bam	SRR1378440	@dbgap@:reads/SRP012005/SRS634403/SRX590073/SRR1378440/SRR1378440.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASRHU-01A-03D.SLX-CHIP_H3K36me3_Kidney.bw	3
TARGET-52-PASRHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASRHU-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASRHU-01A-03D	DNA	EFO	SRS634403	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASRHU-01A-03D A33888 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33888	SRX590079	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PASRHU-01A-03D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-09	TARGET-52-PASRHU-01A-03D A33888 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3RDAACXX_3_AGGCCG.bam	SRR1378403	@dbgap@:reads/SRP012005/SRS634403/SRX590079/SRR1378403/SRR1378403.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASRHU-01A-03D.SLX-CHIP_H3K9me3_Kidney.bw	3
TARGET-52-PASRHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASRHU-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASRHU-01A-03D	DNA	EFO	SRS634403	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASRHU-01A-03D A33887 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33887	SRX590107	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PASRHU-01A-03D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-09	TARGET-52-PASRHU-01A-03D A33887 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3RDAACXX_3_ACCGGC.bam	SRR1378363	@dbgap@:reads/SRP012005/SRS634403/SRX590107/SRR1378363/SRR1378363.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASRHU-01A-03D.SLX-CHIP_H3K4me3_Kidney.bw	3
TARGET-52-PASRHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASRHU-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASRHU-01A-03D	DNA	EFO	SRS634403	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASRHU-01A-03D A33891 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33891	SRX590127	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PASRHU-01A-03D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-09	TARGET-52-PASRHU-01A-03D A33891 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3RDAACXX_3_GAGTGG.bam	SRR1378444	@dbgap@:reads/SRP012005/SRS634403/SRX590127/SRR1378444/SRR1378444.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASRHU-01A-03D.SLX-CHIP_H3K27ac_Kidney.bw	3
TARGET-52-PASRHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASRHU-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASRHU-01A-03D	DNA	EFO	SRS634403	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASRHU-01A-03D A33889 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33889	SRX590137	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PASRHU-01A-03D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-09	TARGET-52-PASRHU-01A-03D A33889 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3RDAACXX_3_CAACTA.bam	SRR1378401	@dbgap@:reads/SRP012005/SRS634403/SRX590137/SRR1378401/SRR1378401.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASRHU-01A-03D.SLX-CHIP_H3K27me3_Kidney.bw	3
TARGET-52-PASRHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASRHU-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASRHU-01A-03D	DNA	EFO	SRS634403	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASRHU-01A-03D A33892 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33892	SRX590141	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PASRHU-01A-03D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-09	TARGET-52-PASRHU-01A-03D A33892 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3RDAACXX_3_GCAAGG.bam	SRR1378361	@dbgap@:reads/SRP012005/SRS634403/SRX590141/SRR1378361/SRR1378361.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASRHU-01A-03D.SLX-CHIP_Control_Kidney.bw	3
TARGET-52-PASXGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASXGF-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXGF-01A-02D	DNA	EFO	SRS924874	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXGF-01A-02D A48121 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48121	SRX1013118	Input DNA control ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASXGF-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PASXGF-01A-02D A48121 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66VNANXX_3_GCACTT.bam	SRR2001582	@dbgap@:reads/SRP012005/SRS924874/SRX1013118/SRR2001582/SRR2001582.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASXGF-01A-02D.ChIP_2.0_Control_Kidney-Left.bw	3
TARGET-52-PASXGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASXGF-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXGF-01A-02D	DNA	EFO	SRS924874	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXGF-01A-02D A48120 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48120	SRX1013151	H3K27me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASXGF-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PASXGF-01A-02D A48120 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66VNANXX_3_CTCAGA.bam	SRR2001541	@dbgap@:reads/SRP012005/SRS924874/SRX1013151/SRR2001541/SRR2001541.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASXGF-01A-02D.ChIP_2.0_H3K27me3_Kidney-Left.bw	3
TARGET-52-PASXGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASXGF-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXGF-01A-02D	DNA	EFO	SRS924874	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXGF-01A-02D A48119 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48119	SRX1013164	H3K4me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASXGF-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PASXGF-01A-02D A48119 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66VNANXX_3_CCCATG.bam	SRR2001559	@dbgap@:reads/SRP012005/SRS924874/SRX1013164/SRR2001559/SRR2001559.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASXGF-01A-02D.ChIP_2.0_H3K4me3_Kidney-Left.bw	3
TARGET-52-PASXGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASXGF-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXGF-01A-02D	DNA	EFO	SRS924874	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXGF-01A-02D A61021 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A61021	SRX2796014	H3K27ac ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PASXGF-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-07-05	TARGET-52-PASXGF-01A-02D A61021 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C9EWTANXX_2_TGCCAT_reheadered.bam	SRR5575686	@dbgap@:reads/SRP012005/SRS924874/SRX2796014/SRR5575686/SRR5575686.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASXGF-01A-02D.ChIP_2.1_H3K27ac_Kidney-Left.bw	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-01A-02D	DNA	EFO	SRS634408	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-01A-02D A33895 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33895	SRX590098	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PASXNA-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PASXNA-01A-02D A33895 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_2_ATGTCA.bam	SRR1378452	@dbgap@:reads/SRP012005/SRS634408/SRX590098/SRR1378452/SRR1378452.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASXNA-01A-02D.SLX-CHIP_H3K9me3_Kidney.bw	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-01A-02D	DNA	EFO	SRS634408	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-01A-02D A33899 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33899	SRX590110	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PASXNA-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PASXNA-01A-02D A33899 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_2_ACGATA.bam	SRR1378434	@dbgap@:reads/SRP012005/SRS634408/SRX590110/SRR1378434/SRR1378434.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASXNA-01A-02D.SLX-CHIP_Control_Kidney.bw	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-01A-02D	DNA	EFO	SRS634408	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-01A-02D A33897 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33897	SRX590129	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PASXNA-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PASXNA-01A-02D A33897 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_2_GGCTAC.bam	SRR1378460	@dbgap@:reads/SRP012005/SRS634408/SRX590129/SRR1378460/SRR1378460.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASXNA-01A-02D.SLX-CHIP_H3K36me3_Kidney.bw	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-01A-02D	DNA	EFO	SRS634408	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-01A-02D A33898 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33898	SRX590130	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PASXNA-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PASXNA-01A-02D A33898 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_2_AAGACT.bam	SRR1378399	@dbgap@:reads/SRP012005/SRS634408/SRX590130/SRR1378399/SRR1378399.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASXNA-01A-02D.SLX-CHIP_H3K27ac_Kidney.bw	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-01A-02D	DNA	EFO	SRS634408	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-01A-02D A33893 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33893	SRX590135	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PASXNA-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PASXNA-01A-02D A33893 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_2_TACAGC.bam	SRR1378380	@dbgap@:reads/SRP012005/SRS634408/SRX590135/SRR1378380/SRR1378380.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASXNA-01A-02D.SLX-CHIP_H3K4me1_Kidney.bw	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-01A-02D	DNA	EFO	SRS634408	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-01A-02D A33896 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33896	SRX590136	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PASXNA-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PASXNA-01A-02D A33896 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_2_TTAGGC.bam	SRR1378366	@dbgap@:reads/SRP012005/SRS634408/SRX590136/SRR1378366/SRR1378366.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASXNA-01A-02D.SLX-CHIP_H3K27me3_Kidney.bw	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-01A-02D	DNA	EFO	SRS634408	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-01A-02D A33894 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33894	SRX590138	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PASXNA-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PASXNA-01A-02D A33894 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_2_TGCCAT.bam	SRR1378390	@dbgap@:reads/SRP012005/SRS634408/SRX590138/SRR1378390/SRR1378390.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PASXNA-01A-02D.SLX-CHIP_H3K4me3_Kidney.bw	3
TARGET-52-PATBLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATBLF-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATBLF-01A-02D	DNA	EFO	SRS924888	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATBLF-01A-02D A48087 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48087	SRX1013117	H3K27me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PATBLF-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-06	TARGET-52-PATBLF-01A-02D A48087 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C6JG9ANXX_6_TGAATG.bam	SRR2001547	@dbgap@:reads/SRP012005/SRS924888/SRX1013117/SRR2001547/SRR2001547.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PATBLF-01A-02D.ChIP_2.0_H3K27me3_Soft_Tissue.bw	3
TARGET-52-PATBLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATBLF-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATBLF-01A-02D	DNA	EFO	SRS924888	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATBLF-01A-02D A48088 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48088	SRX1013122	Input DNA control ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PATBLF-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-06	TARGET-52-PATBLF-01A-02D A48088 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C6JG9ANXX_6_AGTTCC.bam	SRR2001523	@dbgap@:reads/SRP012005/SRS924888/SRX1013122/SRR2001523/SRR2001523.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PATBLF-01A-02D.ChIP_2.0_Control_Soft_Tissue.bw	3
TARGET-52-PATBLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATBLF-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATBLF-01A-02D	DNA	EFO	SRS924888	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATBLF-01A-02D A48086 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48086	SRX1013137	H3K4me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PATBLF-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-06	TARGET-52-PATBLF-01A-02D A48086 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C6JG9ANXX_6_TAATCG.bam	SRR2001584	@dbgap@:reads/SRP012005/SRS924888/SRX1013137/SRR2001584/SRR2001584.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PATBLF-01A-02D.ChIP_2.0_H3K4me3_Soft_Tissue.bw	3
TARGET-52-PATBLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATBLF-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATBLF-01A-02D	DNA	EFO	SRS924888	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATBLF-01A-02D A61009 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A61009	SRX2796006	H3K27ac ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PATBLF-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-52-PATBLF-01A-02D A61009 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C9FD6ANXX_8_TGAATG_reheadered.bam	SRR5575682	@dbgap@:reads/SRP012005/SRS924888/SRX2796006/SRR5575682/SRR5575682.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PATBLF-01A-02D.ChIP_2.1_H3K27ac_Soft_Tissue.bw	3
TARGET-52-PATDVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATDVL-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATDVL-01A-02D	DNA	EFO	SRS924875	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATDVL-01A-02D A48090 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48090	SRX1013119	H3K27me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PATDVL-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PATDVL-01A-02D A48090 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66W1ANXX_1_GATCAG.bam	SRR2001560	@dbgap@:reads/SRP012005/SRS924875/SRX1013119/SRR2001560/SRR2001560.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PATDVL-01A-02D.ChIP_2.0_H3K27me3_Kidney.bw	3
TARGET-52-PATDVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATDVL-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATDVL-01A-02D	DNA	EFO	SRS924875	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATDVL-01A-02D A48089 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48089	SRX1013121	H3K4me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PATDVL-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PATDVL-01A-02D A48089 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66W1ANXX_1_ATCACG.bam	SRR2001577	@dbgap@:reads/SRP012005/SRS924875/SRX1013121/SRR2001577/SRR2001577.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PATDVL-01A-02D.ChIP_2.0_H3K4me3_Kidney.bw	3
TARGET-52-PATDVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATDVL-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATDVL-01A-02D	DNA	EFO	SRS924875	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATDVL-01A-02D A48091 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48091	SRX1013163	Input DNA control ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PATDVL-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PATDVL-01A-02D A48091 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66W1ANXX_1_AACCCC.bam	SRR2001530	@dbgap@:reads/SRP012005/SRS924875/SRX1013163/SRR2001530/SRR2001530.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PATDVL-01A-02D.ChIP_2.0_Control_Kidney.bw	3
TARGET-52-PATDVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATDVL-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATDVL-01A-02D	DNA	EFO	SRS924875	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATDVL-01A-02D A61010 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A61010	SRX2796036	H3K27ac ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PATDVL-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-52-PATDVL-01A-02D A61010 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C9FD6ANXX_8_AGTTCC_reheadered.bam	SRR5575683	@dbgap@:reads/SRP012005/SRS924875/SRX2796036/SRR5575683/SRR5575683.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PATDVL-01A-02D.ChIP_2.1_H3K27ac_Kidney.bw	3
TARGET-52-PATENH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATENH-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATENH-01A-02D	DNA	EFO	SRS634397	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATENH-01A-02D A34008 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34008	SRX590035	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PATENH-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-02	TARGET-52-PATENH-01A-02D A34008 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3YJAACXX_1_CTCAGA.bam	SRR1378436	@dbgap@:reads/SRP012005/SRS634397/SRX590035/SRR1378436/SRR1378436.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PATENH-01A-02D.SLX-CHIP_H3K27me3_Kidney.bw	3
TARGET-52-PATENH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATENH-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATENH-01A-02D	DNA	EFO	SRS634397	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATENH-01A-02D A34006 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34006	SRX590039	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PATENH-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-02	TARGET-52-PATENH-01A-02D A34006 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3YJAACXX_1_CACCGG.bam	SRR1378364	@dbgap@:reads/SRP012005/SRS634397/SRX590039/SRR1378364/SRR1378364.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PATENH-01A-02D.SLX-CHIP_H3K4me3_Kidney.bw	3
TARGET-52-PATENH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATENH-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATENH-01A-02D	DNA	EFO	SRS634397	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATENH-01A-02D A34005 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34005	SRX590050	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PATENH-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-02	TARGET-52-PATENH-01A-02D A34005 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3YJAACXX_1_ATAATT.bam	SRR1378464	@dbgap@:reads/SRP012005/SRS634397/SRX590050/SRR1378464/SRR1378464.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PATENH-01A-02D.SLX-CHIP_H3K4me1_Kidney.bw	3
TARGET-52-PATENH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATENH-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATENH-01A-02D	DNA	EFO	SRS634397	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATENH-01A-02D A34007 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34007	SRX590081	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PATENH-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-02	TARGET-52-PATENH-01A-02D A34007 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3YJAACXX_1_CCCATG.bam	SRR1378428	@dbgap@:reads/SRP012005/SRS634397/SRX590081/SRR1378428/SRR1378428.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PATENH-01A-02D.SLX-CHIP_H3K9me3_Kidney.bw	3
TARGET-52-PATENH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATENH-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATENH-01A-02D	DNA	EFO	SRS634397	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATENH-01A-02D A34010 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34010	SRX590123	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PATENH-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-02	TARGET-52-PATENH-01A-02D A34010 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3YJAACXX_1_TATAAT.bam	SRR1378379	@dbgap@:reads/SRP012005/SRS634397/SRX590123/SRR1378379/SRR1378379.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PATENH-01A-02D.SLX-CHIP_H3K27ac_Kidney.bw	3
TARGET-52-PATENH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATENH-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATENH-01A-02D	DNA	EFO	SRS634397	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATENH-01A-02D A34011 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34011	SRX590131	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PATENH-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-02	TARGET-52-PATENH-01A-02D A34011 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3YJAACXX_1_TGCTGG.bam	SRR1378407	@dbgap@:reads/SRP012005/SRS634397/SRX590131/SRR1378407/SRR1378407.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PATENH-01A-02D.SLX-CHIP_Control_Kidney.bw	3
TARGET-52-PATENH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATENH-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATENH-01A-02D	DNA	EFO	SRS634397	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATENH-01A-02D A34009 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34009	SRX590146	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PATENH-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-02	TARGET-52-PATENH-01A-02D A34009 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3YJAACXX_1_GCACTT.bam	SRR1378439	@dbgap@:reads/SRP012005/SRS634397/SRX590146/SRR1378439/SRR1378439.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PATENH-01A-02D.SLX-CHIP_H3K36me3_Kidney.bw	3
TARGET-52-PATFZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFZZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFZZ-01A-02D	DNA	EFO	SRS634396	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFZZ-01A-02D A34029 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34029	SRX590034	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PATFZZ-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-02	TARGET-52-PATFZZ-01A-02D A34029 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3YJAACXX_2_GATCAG.bam	SRR1378422	@dbgap@:reads/SRP012005/SRS634396/SRX590034/SRR1378422/SRR1378422.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PATFZZ-01A-02D.SLX-CHIP_H3K4me3_Kidney.bw	3
TARGET-52-PATFZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFZZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFZZ-01A-02D	DNA	EFO	SRS634396	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFZZ-01A-02D A34033 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34033	SRX590041	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PATFZZ-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-02	TARGET-52-PATFZZ-01A-02D A34033 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3YJAACXX_2_CAAAAG.bam	SRR1378419	@dbgap@:reads/SRP012005/SRS634396/SRX590041/SRR1378419/SRR1378419.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PATFZZ-01A-02D.SLX-CHIP_H3K27ac_Kidney.bw	3
TARGET-52-PATFZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFZZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFZZ-01A-02D	DNA	EFO	SRS634396	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFZZ-01A-02D A34034 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34034	SRX590053	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PATFZZ-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-02	TARGET-52-PATFZZ-01A-02D A34034 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3YJAACXX_2_CCAACA.bam	SRR1378441	@dbgap@:reads/SRP012005/SRS634396/SRX590053/SRR1378441/SRR1378441.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PATFZZ-01A-02D.SLX-CHIP_Control_Kidney.bw	3
TARGET-52-PATFZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFZZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFZZ-01A-02D	DNA	EFO	SRS634396	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFZZ-01A-02D A34028 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34028	SRX590074	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PATFZZ-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-02	TARGET-52-PATFZZ-01A-02D A34028 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3YJAACXX_2_ATCACG.bam	SRR1378404	@dbgap@:reads/SRP012005/SRS634396/SRX590074/SRR1378404/SRR1378404.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PATFZZ-01A-02D.SLX-CHIP_H3K4me1_Kidney.bw	3
TARGET-52-PATFZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFZZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFZZ-01A-02D	DNA	EFO	SRS634396	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFZZ-01A-02D A34030 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34030	SRX590080	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PATFZZ-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-02	TARGET-52-PATFZZ-01A-02D A34030 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3YJAACXX_2_AACCCC.bam	SRR1378459	@dbgap@:reads/SRP012005/SRS634396/SRX590080/SRR1378459/SRR1378459.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PATFZZ-01A-02D.SLX-CHIP_H3K9me3_Kidney.bw	3
TARGET-52-PATFZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFZZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFZZ-01A-02D	DNA	EFO	SRS634396	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFZZ-01A-02D A34031 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34031	SRX590132	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PATFZZ-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-02	TARGET-52-PATFZZ-01A-02D A34031 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3YJAACXX_2_ACCCAG.bam	SRR1378462	@dbgap@:reads/SRP012005/SRS634396/SRX590132/SRR1378462/SRR1378462.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PATFZZ-01A-02D.SLX-CHIP_H3K27me3_Kidney.bw	3
TARGET-52-PATFZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFZZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFZZ-01A-02D	DNA	EFO	SRS634396	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFZZ-01A-02D A34032 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34032	SRX590133	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PATFZZ-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-02	TARGET-52-PATFZZ-01A-02D A34032 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3YJAACXX_2_AGCGCT.bam	SRR1378473	@dbgap@:reads/SRP012005/SRS634396/SRX590133/SRR1378473/SRR1378473.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PATFZZ-01A-02D.SLX-CHIP_H3K36me3_Kidney.bw	3
TARGET-52-PAUCGJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUCGJ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUCGJ-01A-02D	DNA	EFO	SRS924881	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUCGJ-01A-02D A48092 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48092	SRX1013104	H3K4me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAUCGJ-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAUCGJ-01A-02D A48092 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66W1ANXX_2_ACCCAG.bam	SRR2001592	@dbgap@:reads/SRP012005/SRS924881/SRX1013104/SRR2001592/SRR2001592.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUCGJ-01A-02D.ChIP_2.0_H3K4me3_Kidney.bw	3
TARGET-52-PAUCGJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUCGJ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUCGJ-01A-02D	DNA	EFO	SRS924881	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUCGJ-01A-02D A48093 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48093	SRX1013111	H3K27me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAUCGJ-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAUCGJ-01A-02D A48093 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66W1ANXX_2_AGCGCT.bam	SRR2001552	@dbgap@:reads/SRP012005/SRS924881/SRX1013111/SRR2001552/SRR2001552.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUCGJ-01A-02D.ChIP_2.0_H3K27me3_Kidney.bw	3
TARGET-52-PAUCGJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUCGJ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUCGJ-01A-02D	DNA	EFO	SRS924881	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUCGJ-01A-02D A48094 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48094	SRX1013155	Input DNA Control ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAUCGJ-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAUCGJ-01A-02D A48094 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66W1ANXX_2_CAAAAG.bam	SRR2001573	@dbgap@:reads/SRP012005/SRS924881/SRX1013155/SRR2001573/SRR2001573.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUCGJ-01A-02D.ChIP_2.0_Control_Kidney.bw	3
TARGET-52-PAUCGJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUCGJ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUCGJ-01A-02D	DNA	EFO	SRS924881	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUCGJ-01A-02D A61011 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A61011	SRX2796030	H3K27ac ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAUCGJ-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-52-PAUCGJ-01A-02D A61011 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C9FD6ANXX_8_CGATGT_reheadered.bam	SRR5575668	@dbgap@:reads/SRP012005/SRS924881/SRX2796030/SRR5575668/SRR5575668.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUCGJ-01A-02D.ChIP_2.1_H3K27ac_Kidney.bw	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-01A-02D	DNA	EFO	SRS634398	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-01A-02D A34067 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34067	SRX590036	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUDPV-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-02	TARGET-52-PAUDPV-01A-02D A34067 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3YJAACXX_3_CTAGCT.bam	SRR1378393	@dbgap@:reads/SRP012005/SRS634398/SRX590036/SRR1378393/SRR1378393.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUDPV-01A-02D.SLX-CHIP_H3K4me1_Kidney.bw	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-01A-02D	DNA	EFO	SRS634398	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-01A-02D A34070 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34070	SRX590037	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUDPV-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-02	TARGET-52-PAUDPV-01A-02D A34070 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3YJAACXX_3_TGAATG.bam	SRR1378374	@dbgap@:reads/SRP012005/SRS634398/SRX590037/SRR1378374/SRR1378374.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUDPV-01A-02D.SLX-CHIP_H3K27me3_Kidney.bw	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-01A-02D	DNA	EFO	SRS634398	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-01A-02D A34071 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34071	SRX590055	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUDPV-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-02	TARGET-52-PAUDPV-01A-02D A34071 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3YJAACXX_3_AGTTCC.bam	SRR1378478	@dbgap@:reads/SRP012005/SRS634398/SRX590055/SRR1378478/SRR1378478.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUDPV-01A-02D.SLX-CHIP_H3K36me3_Kidney.bw	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-01A-02D	DNA	EFO	SRS634398	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-01A-02D A34072 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34072	SRX590063	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUDPV-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-02	TARGET-52-PAUDPV-01A-02D A34072 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3YJAACXX_3_CGATGT.bam	SRR1378418	@dbgap@:reads/SRP012005/SRS634398/SRX590063/SRR1378418/SRR1378418.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUDPV-01A-02D.SLX-CHIP_H3K27ac_Kidney.bw	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-01A-02D	DNA	EFO	SRS634398	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-01A-02D A34073 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34073	SRX590100	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUDPV-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-02	TARGET-52-PAUDPV-01A-02D A34073 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3YJAACXX_3_TAGCTT.bam	SRR1378442	@dbgap@:reads/SRP012005/SRS634398/SRX590100/SRR1378442/SRR1378442.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUDPV-01A-02D.SLX-CHIP_Control_Kidney.bw	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-01A-02D	DNA	EFO	SRS634398	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-01A-02D A34069 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34069	SRX590105	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUDPV-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-02	TARGET-52-PAUDPV-01A-02D A34069 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3YJAACXX_3_TAATCG.bam	SRR1378429	@dbgap@:reads/SRP012005/SRS634398/SRX590105/SRR1378429/SRR1378429.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUDPV-01A-02D.SLX-CHIP_H3K9me3_Kidney.bw	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-01A-02D	DNA	EFO	SRS634398	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-01A-02D A34068 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34068	SRX590140	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUDPV-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-04-02	TARGET-52-PAUDPV-01A-02D A34068 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3YJAACXX_3_GATGCT.bam	SRR1378415	@dbgap@:reads/SRP012005/SRS634398/SRX590140/SRR1378415/SRR1378415.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUDPV-01A-02D.SLX-CHIP_H3K4me3_Kidney.bw	3
TARGET-52-PAUEKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUEKW-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUEKW-01A-02D	DNA	EFO	SRS634394	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUEKW-01A-02D A33462 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33462	SRX590032	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUEKW-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-28	TARGET-52-PAUEKW-01A-02D A33462 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3THCACXX_3_AACCCC.bam	SRR1378408	@dbgap@:reads/SRP012005/SRS634394/SRX590032/SRR1378408/SRR1378408.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUEKW-01A-02D.SLX-CHIP_H3K9me3_Soft_Tissue.bw	3
TARGET-52-PAUEKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUEKW-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUEKW-01A-02D	DNA	EFO	SRS634394	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUEKW-01A-02D A33464 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33464	SRX590048	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUEKW-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-28	TARGET-52-PAUEKW-01A-02D A33464 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3THCACXX_3_AGCGCT.bam	SRR1378456	@dbgap@:reads/SRP012005/SRS634394/SRX590048/SRR1378456/SRR1378456.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUEKW-01A-02D.SLX-CHIP_H3K36me3_Soft_Tissue.bw	3
TARGET-52-PAUEKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUEKW-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUEKW-01A-02D	DNA	EFO	SRS634394	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUEKW-01A-02D A33460 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33460	SRX590059	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUEKW-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-28	TARGET-52-PAUEKW-01A-02D A33460 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3THCACXX_3_ATCACG.bam	SRR1378468	@dbgap@:reads/SRP012005/SRS634394/SRX590059/SRR1378468/SRR1378468.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUEKW-01A-02D.SLX-CHIP_H3K4me1_Soft_Tissue.bw	3
TARGET-52-PAUEKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUEKW-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUEKW-01A-02D	DNA	EFO	SRS634394	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUEKW-01A-02D A33466 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33466	SRX590101	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUEKW-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-28	TARGET-52-PAUEKW-01A-02D A33466 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3THCACXX_3_CCAACA.bam	SRR1378412	@dbgap@:reads/SRP012005/SRS634394/SRX590101/SRR1378412/SRR1378412.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUEKW-01A-02D.SLX-CHIP_Control_Soft_Tissue.bw	3
TARGET-52-PAUEKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUEKW-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUEKW-01A-02D	DNA	EFO	SRS634394	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUEKW-01A-02D A33465 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33465	SRX590111	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUEKW-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-28	TARGET-52-PAUEKW-01A-02D A33465 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3THCACXX_3_CAAAAG.bam	SRR1378435	@dbgap@:reads/SRP012005/SRS634394/SRX590111/SRR1378435/SRR1378435.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUEKW-01A-02D.SLX-CHIP_H3K27ac_Soft_Tissue.bw	3
TARGET-52-PAUEKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUEKW-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUEKW-01A-02D	DNA	EFO	SRS634394	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUEKW-01A-02D A33463 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33463	SRX590120	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUEKW-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-28	TARGET-52-PAUEKW-01A-02D A33463 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3THCACXX_3_ACCCAG.bam	SRR1378445	@dbgap@:reads/SRP012005/SRS634394/SRX590120/SRR1378445/SRR1378445.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUEKW-01A-02D.SLX-CHIP_H3K27me3_Soft_Tissue.bw	3
TARGET-52-PAUEKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUEKW-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUEKW-01A-02D	DNA	EFO	SRS634394	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUEKW-01A-02D A33461 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A33461	SRX590134	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUEKW-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-28	TARGET-52-PAUEKW-01A-02D A33461 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3THCACXX_3_GATCAG.bam	SRR1378421	@dbgap@:reads/SRP012005/SRS634394/SRX590134/SRR1378421/SRR1378421.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUEKW-01A-02D.SLX-CHIP_H3K4me3_Soft_Tissue.bw	3
TARGET-52-PAUFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUFVP-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUFVP-01A-02D	DNA	EFO	SRS634392	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUFVP-01A-02D A34192 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34192	SRX590030	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUFVP-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PAUFVP-01A-02D A34192 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_6_CTATAC.bam	SRR1378410	@dbgap@:reads/SRP012005/SRS634392/SRX590030/SRR1378410/SRR1378410.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUFVP-01A-02D.SLX-CHIP_H3K27ac_Kidney.bw	3
TARGET-52-PAUFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUFVP-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUFVP-01A-02D	DNA	EFO	SRS634392	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUFVP-01A-02D A34189 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34189	SRX590051	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUFVP-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PAUFVP-01A-02D A34189 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_6_AGGCCG.bam	SRR1378448	@dbgap@:reads/SRP012005/SRS634392/SRX590051/SRR1378448/SRR1378448.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUFVP-01A-02D.SLX-CHIP_H3K9me3_Kidney.bw	3
TARGET-52-PAUFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUFVP-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUFVP-01A-02D	DNA	EFO	SRS634392	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUFVP-01A-02D A34190 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34190	SRX590060	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUFVP-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PAUFVP-01A-02D A34190 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_6_CAACTA.bam	SRR1378424	@dbgap@:reads/SRP012005/SRS634392/SRX590060/SRR1378424/SRR1378424.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUFVP-01A-02D.SLX-CHIP_H3K27me3_Kidney.bw	3
TARGET-52-PAUFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUFVP-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUFVP-01A-02D	DNA	EFO	SRS634392	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUFVP-01A-02D A34191 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34191	SRX590064	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUFVP-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PAUFVP-01A-02D A34191 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_6_CCACGC.bam	SRR1378433	@dbgap@:reads/SRP012005/SRS634392/SRX590064/SRR1378433/SRR1378433.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUFVP-01A-02D.SLX-CHIP_H3K36me3_Kidney.bw	3
TARGET-52-PAUFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUFVP-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUFVP-01A-02D	DNA	EFO	SRS634392	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUFVP-01A-02D A34188 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34188	SRX590084	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUFVP-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PAUFVP-01A-02D A34188 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_6_ACCGGC.bam	SRR1378470	@dbgap@:reads/SRP012005/SRS634392/SRX590084/SRR1378470/SRR1378470.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUFVP-01A-02D.SLX-CHIP_H3K4me3_Kidney.bw	3
TARGET-52-PAUFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUFVP-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUFVP-01A-02D	DNA	EFO	SRS634392	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUFVP-01A-02D A34187 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34187	SRX590112	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUFVP-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PAUFVP-01A-02D A34187 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_6_AACTTG.bam	SRR1378388	@dbgap@:reads/SRP012005/SRS634392/SRX590112/SRR1378388/SRR1378388.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUFVP-01A-02D.SLX-CHIP_H3K4me1_Kidney.bw	3
TARGET-52-PAUFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUFVP-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUFVP-01A-02D	DNA	EFO	SRS634392	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUFVP-01A-02D A34193 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34193	SRX590113	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUFVP-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PAUFVP-01A-02D A34193 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_6_GCAAGG.bam	SRR1378369	@dbgap@:reads/SRP012005/SRS634392/SRX590113/SRR1378369/SRR1378369.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUFVP-01A-02D.SLX-CHIP_Control_Kidney.bw	3
TARGET-52-PAUGYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUGYZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUGYZ-01A-02D	DNA	EFO	SRS634393	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUGYZ-01A-02D A34460 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34460	SRX590031	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUGYZ-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PAUGYZ-01A-02D A34460 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_7_ACGATA.bam	SRR1378398	@dbgap@:reads/SRP012005/SRS634393/SRX590031/SRR1378398/SRR1378398.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUGYZ-01A-02D.SLX-CHIP_Control_Kidney.bw	3
TARGET-52-PAUGYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUGYZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUGYZ-01A-02D	DNA	EFO	SRS634393	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUGYZ-01A-02D A34459 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34459	SRX590056	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUGYZ-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PAUGYZ-01A-02D A34459 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_7_AAGACT.bam	SRR1378370	@dbgap@:reads/SRP012005/SRS634393/SRX590056/SRR1378370/SRR1378370.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUGYZ-01A-02D.SLX-CHIP_H3K27ac_Kidney.bw	3
TARGET-52-PAUGYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUGYZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUGYZ-01A-02D	DNA	EFO	SRS634393	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUGYZ-01A-02D A34458 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34458	SRX590061	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUGYZ-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PAUGYZ-01A-02D A34458 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_7_GGCTAC.bam	SRR1378417	@dbgap@:reads/SRP012005/SRS634393/SRX590061/SRR1378417/SRR1378417.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUGYZ-01A-02D.SLX-CHIP_H3K36me3_Kidney.bw	3
TARGET-52-PAUGYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUGYZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUGYZ-01A-02D	DNA	EFO	SRS634393	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUGYZ-01A-02D A34457 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34457	SRX590103	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUGYZ-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PAUGYZ-01A-02D A34457 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_7_TTAGGC.bam	SRR1378385	@dbgap@:reads/SRP012005/SRS634393/SRX590103/SRR1378385/SRR1378385.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUGYZ-01A-02D.SLX-CHIP_H3K27me3_Kidney.bw	3
TARGET-52-PAUGYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUGYZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUGYZ-01A-02D	DNA	EFO	SRS634393	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUGYZ-01A-02D A34456 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34456	SRX590121	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUGYZ-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PAUGYZ-01A-02D A34456 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_7_ATGTCA.bam	SRR1378427	@dbgap@:reads/SRP012005/SRS634393/SRX590121/SRR1378427/SRR1378427.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUGYZ-01A-02D.SLX-CHIP_H3K9me3_Kidney.bw	3
TARGET-52-PAUGYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUGYZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUGYZ-01A-02D	DNA	EFO	SRS634393	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUGYZ-01A-02D A34455 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34455	SRX590139	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUGYZ-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PAUGYZ-01A-02D A34455 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_7_TGCCAT.bam	SRR1378466	@dbgap@:reads/SRP012005/SRS634393/SRX590139/SRR1378466/SRR1378466.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUGYZ-01A-02D.SLX-CHIP_H3K4me3_Kidney.bw	3
TARGET-52-PAUGYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUGYZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUGYZ-01A-02D	DNA	EFO	SRS634393	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUGYZ-01A-02D A34454 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34454	SRX590143	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUGYZ-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PAUGYZ-01A-02D A34454 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_7_TACAGC.bam	SRR1378467	@dbgap@:reads/SRP012005/SRS634393/SRX590143/SRR1378467/SRR1378467.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUGYZ-01A-02D.SLX-CHIP_H3K4me1_Kidney.bw	3
TARGET-52-PAUHAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUHAZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUHAZ-01A-02D	DNA	EFO	SRS634407	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUHAZ-01A-02D A34467 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34467	SRX590070	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUHAZ-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PAUHAZ-01A-02D A34467 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_8_TGCTGG.bam	SRR1378461	@dbgap@:reads/SRP012005/SRS634407/SRX590070/SRR1378461/SRR1378461.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUHAZ-01A-02D.SLX-CHIP_Control_Kidney.bw	3
TARGET-52-PAUHAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUHAZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUHAZ-01A-02D	DNA	EFO	SRS634407	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUHAZ-01A-02D A34463 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34463	SRX590086	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUHAZ-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PAUHAZ-01A-02D A34463 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_8_CCCATG.bam	SRR1378425	@dbgap@:reads/SRP012005/SRS634407/SRX590086/SRR1378425/SRR1378425.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUHAZ-01A-02D.SLX-CHIP_H3K9me3_Kidney.bw	3
TARGET-52-PAUHAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUHAZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUHAZ-01A-02D	DNA	EFO	SRS634407	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUHAZ-01A-02D A34466 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34466	SRX590089	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUHAZ-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PAUHAZ-01A-02D A34466 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_8_TATAAT.bam	SRR1378383	@dbgap@:reads/SRP012005/SRS634407/SRX590089/SRR1378383/SRR1378383.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUHAZ-01A-02D.SLX-CHIP_H3K27ac_Kidney.bw	3
TARGET-52-PAUHAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUHAZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUHAZ-01A-02D	DNA	EFO	SRS634407	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUHAZ-01A-02D A34461 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34461	SRX590097	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUHAZ-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PAUHAZ-01A-02D A34461 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_8_ATAATT.bam	SRR1378396	@dbgap@:reads/SRP012005/SRS634407/SRX590097/SRR1378396/SRR1378396.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUHAZ-01A-02D.SLX-CHIP_H3K4me1_Kidney.bw	3
TARGET-52-PAUHAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUHAZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUHAZ-01A-02D	DNA	EFO	SRS634407	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUHAZ-01A-02D A34465 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34465	SRX590109	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUHAZ-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PAUHAZ-01A-02D A34465 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_8_GCACTT.bam	SRR1378377	@dbgap@:reads/SRP012005/SRS634407/SRX590109/SRR1378377/SRR1378377.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUHAZ-01A-02D.SLX-CHIP_H3K36me3_Kidney.bw	3
TARGET-52-PAUHAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUHAZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUHAZ-01A-02D	DNA	EFO	SRS634407	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUHAZ-01A-02D A34464 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34464	SRX590117	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUHAZ-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PAUHAZ-01A-02D A34464 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_8_CTCAGA.bam	SRR1378465	@dbgap@:reads/SRP012005/SRS634407/SRX590117/SRR1378465/SRR1378465.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUHAZ-01A-02D.SLX-CHIP_H3K27me3_Kidney.bw	3
TARGET-52-PAUHAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUHAZ-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUHAZ-01A-02D	DNA	EFO	SRS634407	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUHAZ-01A-02D A34462 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A34462	SRX590145	ChIP_Seq analysis of rhabdoid tumor sample TARGET-52-PAUHAZ-01A-02D using Illumina HiSeq 2000	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2000:01	BCCA	2014-03-05	TARGET-52-PAUHAZ-01A-02D A34462 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.17.21.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C3LA1ACXX_8_CACCGG.bam	SRR1378432	@dbgap@:reads/SRP012005/SRS634407/SRX590145/SRR1378432/SRR1378432.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAUHAZ-01A-02D.SLX-CHIP_H3K4me3_Kidney.bw	3
TARGET-52-PAVDPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVDPR-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVDPR-01A-02D	DNA	EFO	SRS924882	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVDPR-01A-02D A48122 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48122	SRX1013105	H3K4me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAVDPR-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAVDPR-01A-02D A48122 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66VNANXX_4_TATAAT.bam	SRR2001555	@dbgap@:reads/SRP012005/SRS924882/SRX1013105/SRR2001555/SRR2001555.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAVDPR-01A-02D.ChIP_2.0_H3K4me3_Kidney-Right.bw	3
TARGET-52-PAVDPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVDPR-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVDPR-01A-02D	DNA	EFO	SRS924882	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVDPR-01A-02D A48123 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48123	SRX1013127	H3K27me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAVDPR-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAVDPR-01A-02D A48123 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66VNANXX_4_TGCTGG.bam	SRR2001548	@dbgap@:reads/SRP012005/SRS924882/SRX1013127/SRR2001548/SRR2001548.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAVDPR-01A-02D.ChIP_2.0_H3K27me3_Kidney-Right.bw	3
TARGET-52-PAVDPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVDPR-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVDPR-01A-02D	DNA	EFO	SRS924882	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVDPR-01A-02D A48124 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48124	SRX1013154	Input DNA control ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAVDPR-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAVDPR-01A-02D A48124 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66VNANXX_4_CCGTCC.bam	SRR2001521	@dbgap@:reads/SRP012005/SRS924882/SRX1013154/SRR2001521/SRR2001521.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAVDPR-01A-02D.ChIP_2.0_Control_Kidney-Right.bw	3
TARGET-52-PAVDPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVDPR-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVDPR-01A-02D	DNA	EFO	SRS924882	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVDPR-01A-02D A61022 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A61022	SRX2796002	H3K27ac ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAVDPR-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-07-05	TARGET-52-PAVDPR-01A-02D A61022 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C9EWTANXX_2_ATGTCA_reheadered.bam	SRR5575664	@dbgap@:reads/SRP012005/SRS924882/SRX2796002/SRR5575664/SRR5575664.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAVDPR-01A-02D.ChIP_2.1_H3K27ac_Kidney-Right.bw	3
TARGET-52-PAVITI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVITI-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVITI-01A-02D	DNA	EFO	SRS924868	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVITI-01A-02D A48095 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48095	SRX1013138	H3K4me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAVITI-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAVITI-01A-02D A48095 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66W1ANXX_3_CCAACA.bam	SRR2001590	@dbgap@:reads/SRP012005/SRS924868/SRX1013138/SRR2001590/SRR2001590.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAVITI-01A-02D.ChIP_2.0_H3K4me3_Kidney-Left.bw	3
TARGET-52-PAVITI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVITI-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVITI-01A-02D	DNA	EFO	SRS924868	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVITI-01A-02D A48097 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48097	SRX1013144	Input DNA Control ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAVITI-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAVITI-01A-02D A48097 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66W1ANXX_3_GATGCT.bam	SRR2001593	@dbgap@:reads/SRP012005/SRS924868/SRX1013144/SRR2001593/SRR2001593.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAVITI-01A-02D.ChIP_2.0_Control_Kidney-Left.bw	3
TARGET-52-PAVITI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVITI-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVITI-01A-02D	DNA	EFO	SRS924868	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVITI-01A-02D A48096 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48096	SRX1013170	H3K27me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAVITI-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAVITI-01A-02D A48096 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66W1ANXX_3_CTAGCT.bam	SRR2001572	@dbgap@:reads/SRP012005/SRS924868/SRX1013170/SRR2001572/SRR2001572.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAVITI-01A-02D.ChIP_2.0_H3K27me3_Kidney-Left.bw	3
TARGET-52-PAVITI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVITI-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVITI-01A-02D	DNA	EFO	SRS924868	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVITI-01A-02D A61012 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A61012	SRX2796022	H3K27ac ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAVITI-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-06-24	TARGET-52-PAVITI-01A-02D A61012 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C9FD6ANXX_8_TAGCTT_reheadered.bam	SRR5575684	@dbgap@:reads/SRP012005/SRS924868/SRX2796022/SRR5575684/SRR5575684.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAVITI-01A-02D.ChIP_2.1_H3K27ac_Kidney-Left.bw	3
TARGET-52-PAVITI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVITI-11A	organism part	EFO	Normal Tissue	NCIt	Solid Tissue Normal	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVITI-11A-02D	DNA	EFO	SRS924872	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVITI-11A-02D A48152 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48152	SRX1013112	H3K4me3 ChIP-Seq analysis of normal sample TARGET-52-PAVITI-11A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAVITI-11A-02D A48152 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C671NANXX_8_AGAAGA.bam	SRR2001587	@dbgap@:reads/SRP012005/SRS924872/SRX1013112/SRR2001587/SRR2001587.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAVITI-11A-02D.ChIP_2.0_H3K4me3_Kidney-Left.bw	3
TARGET-52-PAVITI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVITI-11A	organism part	EFO	Normal Tissue	NCIt	Solid Tissue Normal	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVITI-11A-02D	DNA	EFO	SRS924872	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVITI-11A-02D A48154 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48154	SRX1013152	Input DNA control ChIP-Seq analysis of normal sample TARGET-52-PAVITI-11A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAVITI-11A-02D A48154 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C671NANXX_8_CAGGCG.bam	SRR2001575	@dbgap@:reads/SRP012005/SRS924872/SRX1013152/SRR2001575/SRR2001575.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAVITI-11A-02D.ChIP_2.0_Control_Kidney-Left.bw	3
TARGET-52-PAVITI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVITI-11A	organism part	EFO	Normal Tissue	NCIt	Solid Tissue Normal	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVITI-11A-02D	DNA	EFO	SRS924872	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVITI-11A-02D A48153 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48153	SRX1013166	H3K27me3 ChIP-Seq analysis of normal sample TARGET-52-PAVITI-11A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAVITI-11A-02D A48153 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C671NANXX_8_ATCTAT.bam	SRR2001591	@dbgap@:reads/SRP012005/SRS924872/SRX1013166/SRR2001591/SRR2001591.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAVITI-11A-02D.ChIP_2.0_H3K27me3_Kidney-Left.bw	3
TARGET-52-PAVITI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVITI-11A	organism part	EFO	Normal Tissue	NCIt	Solid Tissue Normal	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVITI-11A-02D	DNA	EFO	SRS924872	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVITI-11A-02D A61013 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A61013	SRX2796020	H3K27ac ChIP-Seq analysis of normal sample TARGET-52-PAVITI-11A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-07-05	TARGET-52-PAVITI-11A-02D A61013 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C9EWTANXX_1_AACTTG_reheadered.bam	SRR5575674	@dbgap@:reads/SRP012005/SRS924872/SRX2796020/SRR5575674/SRR5575674.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAVITI-11A-02D.ChIP_2.1_H3K27ac_Kidney-Left.bw	3
TARGET-52-PAVVIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVVIT-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVVIT-01A-02D	DNA	EFO	SRS924886	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVVIT-01A-02D A48126 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48126	SRX1013102	H3K27me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAVVIT-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAVVIT-01A-02D A48126 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66VNANXX_5_CTTGTA.bam	SRR2001595	@dbgap@:reads/SRP012005/SRS924886/SRX1013102/SRR2001595/SRR2001595.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAVVIT-01A-02D.ChIP_2.0_H3K27me3_Kidney-Left.bw	3
TARGET-52-PAVVIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVVIT-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVVIT-01A-02D	DNA	EFO	SRS924886	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVVIT-01A-02D A48127 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48127	SRX1013134	Input DNA control ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAVVIT-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAVVIT-01A-02D A48127 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66VNANXX_5_AAGCGA.bam	SRR2001554	@dbgap@:reads/SRP012005/SRS924886/SRX1013134/SRR2001554/SRR2001554.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAVVIT-01A-02D.ChIP_2.0_Control_Kidney-Left.bw	3
TARGET-52-PAVVIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVVIT-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVVIT-01A-02D	DNA	EFO	SRS924886	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVVIT-01A-02D A48125 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48125	SRX1013139	H3K4me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAVVIT-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAVVIT-01A-02D A48125 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66VNANXX_5_TGACCA.bam	SRR2001543	@dbgap@:reads/SRP012005/SRS924886/SRX1013139/SRR2001543/SRR2001543.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAVVIT-01A-02D.ChIP_2.0_H3K4me3_Kidney-Left.bw	3
TARGET-52-PAVVIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVVIT-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVVIT-01A-02D	DNA	EFO	SRS924886	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVVIT-01A-02D A61023 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A61023	SRX2795992	H3K27ac ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAVVIT-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-07-05	TARGET-52-PAVVIT-01A-02D A61023 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C9EWTANXX_2_TTAGGC_reheadered.bam	SRR5575689	@dbgap@:reads/SRP012005/SRS924886/SRX2795992/SRR5575689/SRR5575689.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAVVIT-01A-02D.ChIP_2.1_H3K27ac_Kidney-Left.bw	3
TARGET-52-PAVYKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVYKD-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVYKD-01A-02D	DNA	EFO	SRS924890	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVYKD-01A-02D A48149 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48149	SRX1013110	H3K4me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAVYKD-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAVYKD-01A-02D A48149 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C671NANXX_7_GCCAAT.bam	SRR2001526	@dbgap@:reads/SRP012005/SRS924890/SRX1013110/SRR2001526/SRR2001526.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAVYKD-01A-02D.ChIP_2.0_H3K4me3_Kidney-Right.bw	3
TARGET-52-PAVYKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVYKD-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVYKD-01A-02D	DNA	EFO	SRS924890	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVYKD-01A-02D A48151 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48151	SRX1013132	Input DNA control ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAVYKD-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAVYKD-01A-02D A48151 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C671NANXX_7_AATAGG.bam	SRR2001553	@dbgap@:reads/SRP012005/SRS924890/SRX1013132/SRR2001553/SRR2001553.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAVYKD-01A-02D.ChIP_2.0_Control_Kidney-Right.bw	3
TARGET-52-PAVYKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVYKD-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVYKD-01A-02D	DNA	EFO	SRS924890	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVYKD-01A-02D A48150 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48150	SRX1013135	H3K27me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAVYKD-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAVYKD-01A-02D A48150 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C671NANXX_7_AAAGCA.bam	SRR2001562	@dbgap@:reads/SRP012005/SRS924890/SRX1013135/SRR2001562/SRR2001562.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAVYKD-01A-02D.ChIP_2.0_H3K27me3_Kidney-Right.bw	3
TARGET-52-PAVYKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVYKD-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVYKD-01A-02D	DNA	EFO	SRS924890	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVYKD-01A-02D A61031 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A61031	SRX2796018	H3K27ac ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAVYKD-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-07-05	TARGET-52-PAVYKD-01A-02D A61031 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C9EWTANXX_3_GCACTT_reheadered.bam	SRR5575673	@dbgap@:reads/SRP012005/SRS924890/SRX2796018/SRR5575673/SRR5575673.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAVYKD-01A-02D.ChIP_2.1_H3K27ac_Kidney-Right.bw	3
TARGET-52-PAWFBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFBL-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFBL-01A-02D	DNA	EFO	SRS924877	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFBL-01A-02D A48098 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48098	SRX1013108	H3K4me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFBL-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAWFBL-01A-02D A48098 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66W1ANXX_4_TAATCG.bam	SRR2001536	@dbgap@:reads/SRP012005/SRS924877/SRX1013108/SRR2001536/SRR2001536.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAWFBL-01A-02D.ChIP_2.0_H3K4me3_Kidney-Left.bw	3
TARGET-52-PAWFBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFBL-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFBL-01A-02D	DNA	EFO	SRS924877	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFBL-01A-02D A48099 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48099	SRX1013143	H3K27me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFBL-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAWFBL-01A-02D A48099 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66W1ANXX_4_TGAATG.bam	SRR2001564	@dbgap@:reads/SRP012005/SRS924877/SRX1013143/SRR2001564/SRR2001564.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAWFBL-01A-02D.ChIP_2.0_H3K27me3_Kidney-Left.bw	3
TARGET-52-PAWFBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFBL-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFBL-01A-02D	DNA	EFO	SRS924877	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFBL-01A-02D A48100 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48100	SRX1013160	Input DNA control ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFBL-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAWFBL-01A-02D A48100 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66W1ANXX_4_AGTTCC.bam	SRR2001561	@dbgap@:reads/SRP012005/SRS924877/SRX1013160/SRR2001561/SRR2001561.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAWFBL-01A-02D.ChIP_2.0_Control_Kidney-Left.bw	3
TARGET-52-PAWFBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFBL-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFBL-01A-02D	DNA	EFO	SRS924877	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFBL-01A-02D A61014 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A61014	SRX2796010	H3K27ac ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFBL-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-07-05	TARGET-52-PAWFBL-01A-02D A61014 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C9EWTANXX_1_ACCGGC_reheadered.bam	SRR5575685	@dbgap@:reads/SRP012005/SRS924877/SRX2796010/SRR5575685/SRR5575685.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAWFBL-01A-02D.ChIP_2.1_H3K27ac_Kidney-Left.bw	3
TARGET-52-PAWFWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFWK-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFWK-01A-02D	DNA	EFO	SRS924892	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFWK-01A-02D A48128 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48128	SRX1013098	H3K4me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFWK-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAWFWK-01A-02D A48128 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66VNANXX_6_ACTCTC.bam	SRR2001549	@dbgap@:reads/SRP012005/SRS924892/SRX1013098/SRR2001549/SRR2001549.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAWFWK-01A-02D.ChIP_2.0_H3K4me3_Kidney-Right.bw	3
TARGET-52-PAWFWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFWK-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFWK-01A-02D	DNA	EFO	SRS924892	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFWK-01A-02D A48130 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48130	SRX1013107	Input DNA control ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFWK-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAWFWK-01A-02D A48130 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66VNANXX_6_CACGAT.bam	SRR2001589	@dbgap@:reads/SRP012005/SRS924892/SRX1013107/SRR2001589/SRR2001589.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAWFWK-01A-02D.ChIP_2.0_Control_Kidney-Right.bw	3
TARGET-52-PAWFWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFWK-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFWK-01A-02D	DNA	EFO	SRS924892	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFWK-01A-02D A48129 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A48129	SRX1013109	H3K27me3 ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFWK-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-26	TARGET-52-PAWFWK-01A-02D A48129 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C66VNANXX_6_ATACGG.bam	SRR2001586	@dbgap@:reads/SRP012005/SRS924892/SRX1013109/SRR2001586/SRR2001586.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAWFWK-01A-02D.ChIP_2.0_H3K27me3_Kidney-Right.bw	3
TARGET-52-PAWFWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFWK-01A	organism part	EFO	Solid Tumor	NCIt	Primary Solid Tumor	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFWK-01A-02D	DNA	EFO	SRS924892	bcgsc.ca:Protocol:ChIPseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFWK-01A-02D A61024 library	PAIRED	GENOMIC	ChIP-Seq	ChIP	A61024	SRX2795996	H3K27ac ChIP-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFWK-01A-02D using Illumina HiSeq 2500	bcgsc.ca:Protocol:ChIPseq-Sequence-Illumina-HiSeq2500:01	BCCA	2016-07-05	TARGET-52-PAWFWK-01A-02D A61024 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:ChIPseq-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:ChIPseq-ReadAlign:01	C9EWTANXX_2_GGCTAC_reheadered.bam	SRR5575666	@dbgap@:reads/SRP012005/SRS924892/SRX2795996/SRR5575666/SRR5575666.sra	2	GRCh37-lite	bcgsc.ca:Protocol:ChIPseq-PeakCall:01	TARGET-52-PAWFWK-01A-02D.ChIP_2.1_H3K27ac_Kidney-Right.bw	3
