Class	Strain	Accession_ID	Source	Comments	
HPV	HPV	NC_027779.1	"GDC, Peggy (version 1)"		
HPV	HPV1	NC_001356.1	GRCh37-lite		
HPV	HPV2	NC_001352.1	GRCh37-lite		
HPV	HPV4	NC_001457.1	GRCh37-lite		
HPV	HPV5	NC_001531.1	GRCh37-lite		
HPV	HPV6	NC_001355.1	GRCh37-lite		
HPV	HPV7	NC_001595.1	GRCh37-lite		
HPV	HPV9	NC_001596.1	GRCh37-lite		
HPV	HPV10	NC_001576.1	GRCh37-lite		
HPV	HPV16	NC_001526.2	GRCh37-lite	high risk	
HPV	HPV18	NC_001357.1	GRCh37-lite	high risk	
HPV	HPV26	NC_001583.1	GRCh37-lite	high risk	
HPV	HPV31	J04353.1	GRCh37-lite	high risk	
HPV	HPV32	NC_001586.1	GRCh37-lite		
HPV	HPV33	M12732.1	GRCh37-lite	high risk	
HPV	HPV34	NC_001587.1	GRCh37-lite		
HPV	HPV35	X74477	Peggy	high risk	
HPV	HPV39	M62849	Peggy	high risk	
HPV	HPV41	NC_001354.1	GRCh37-lite		
HPV	HPV45	X74479		"GDC,GRCh37-lite"	high risk
HPV	HPV48	NC_001690.1	GRCh37-lite		
HPV	HPV49	NC_001591.1	GRCh37-lite		
HPV	HPV50	NC_001691.1	GRCh37-lite		
HPV	HPV51	M62877	Peggy	high risk	
HPV	HPV52	X74481	Peggy	high risk	
HPV	HPV53	NC_001593.1	GRCh37-lite	high risk	
HPV	HPV54	NC_001676.1	GRCh37-lite		
HPV	HPV56	X74483	Peggy	high risk	
HPV	HPV58	D90400	Peggy	high risk	
HPV	HPV59	X77858	Peggy	high risk	
HPV	HPV60	NC_001693.1	GRCh37-lite		
HPV	HPV61	NC_001694.1	GRCh37-lite		
HPV	HPV63	NC_001458.1	GRCh37-lite		
HPV	HPV66	U31794	Peggy	high risk	
HPV	HPV67	D21208	Peggy	high risk	
HPV	HPV68	DQ080079	Peggy	high risk	
HPV	HPV70	U21941	Peggy	high risk	
HPV	HPV73	X94165	Peggy	high risk	
HPV	HPV82	AB027021	Peggy	high risk	
HPV	HPV88	NC_010329.1	GRCh37-lite		
HPV	HPV90	NC_004104.1	GRCh37-lite		
HPV	HPV92	NC_004500.1	GRCh37-lite		
HPV	HPV96	NC_005134.2	GRCh37-lite		
HPV	HPV101	NC_008189.1	GRCh37-lite		
HPV	HPV103	NC_008188.1	GRCh37-lite		
HPV	HPV108	NC_012213.1	GRCh37-lite		
HPV	HPV109	NC_012485.1	GRCh37-lite		
HPV	HPV112	NC_012486.1	GRCh37-lite		
HPV	HPV116	NC_013035.1	GRCh37-lite		
HPV	HPV121	NC_014185.1	GRCh37-lite		
HPV	HPV128	NC_014952.1	GRCh37-lite		
HPV	HPV129	NC_014953.1	GRCh37-lite		
HPV	HPV131	NC_014954.1	GRCh37-lite		
HPV	HPV132	NC_014955.1	GRCh37-lite		
HPV	HPV134	NC_014956.1	GRCh37-lite		
HPV	HPV148	NC_014835.1	GRCh37-lite		
CMV	Human_herpesvirus_5	NC_006273.2	"GRCh38.d1.vd1 (GDC), Peggy"	Peggy specifies version 2 of this genome	
EBV	Human_herpesvirus_4	NC_007605.1	"GRCh38.d1.vd1 (GDC), Peggy"	GDC and Peggy only list this one. Not EBV2 as below. Peggy further specifies version 1 of this genome.	
EBV2	Human_herpesvirus_4_type_2 	NC_009334			
HBV	Hepatitis_B_virus	NC_003977.2	"GRCh38.d1.vd1 (GDC), Peggy"	GDC uses version 1. Peggy specifies version 2	
HCV	Hepatitis_C_virus	NC_004102.1	"GRCh38.d1.vd1 (GDC), Peggy"	GDC and Peggy don't specify genotypes listed in the following rows. Peggy further specifies version 1	
HCV	Hepatitis_C_virus_genotype_2	NC_009823.1	GDC	version1	
HCV	Hepatitis_C_virus_genotype_3	NC_009824			
HCV	Hepatitis_C_virus_genotype_4	NC_009825			
HCV	Hepatitis_C_virus_genotype_5	NC_009826			
HCV	Hepatitis_C_virus_genotype_6	NC_009827			
HIV	Human_immunodeficiency_virus_1	NC_001802.1	GRCh38.d1.vd1 (GDC)	version 1	
HIV	Human_immunodeficiency_virus_2	NC_001722.1	GRCh38.d1.vd1 (GDC)	version 1	
HHV	Human_herpesvirus_1	NC_001806			
HHV	Human_herpesvirus_2	NC_001798			
HHV	Human_herpesvirus_3	NC_001348			
HHV	Human_herpesvirus_6A	NC_001664			
HHV	Human_herpesvirus_6B	NC_000898			
HHV	Human_herpesvirus_7	NC_001716			
HHV	Human_herpesvirus_8	NC_009333.1	"GRCh38.d1.vd1 (GDC), Peggy"	GDC and Peggy only list this one. Peggy specifies version 1 of this genome	
HTLV	Human_T-lymphotropic_virus_1	NC_001436.1	"GRCh38.d1.vd1 (GDC), Peggy"	GDC and Peggy only list this one. Peggy specifies version 1 of this genome	
HTLV	Human_T-lymphotropic_virus_2	NC_001488			
HTLV	Human_T-lymphotropic_virus_4	NC_011800			
MCV	Merkel_cell_polyomavirus	NC_010277.2	"GRCh38.d1.vd1 (GDC), Peggy"	Peggy specifies version 2	
SV	Simian_virus_40	NC_001669.1	GRCh38.d1.vd1 (GDC)	version 1	
Saimiriine herpesvirus	Saimiriine herpesvirus	AJ410494	Peggy		
Saimiriine herpesvirus	Saimiriine herpesvirus	AJ410493	Peggy		
BK_polyomavirus	BK_polyomavirus	NC_001538.1	Peggy 	version 1	
HPV	HPV69	AB027020	GRCh38.d1.vd1 (GDC)		
HPV	HPV3	X74462	GRCh38.d1.vd1 (GDC)		
HPV	HPV8	M12737	GRCh38.d1.vd1 (GDC)		
HPV	HPV11	M14119	GRCh38.d1.vd1 (GDC)		
HPV	HPV12	X74466	GRCh38.d1.vd1 (GDC)		
HPV	HPV13	X62843	GRCh38.d1.vd1 (GDC)		
HPV	HPV14	X74467	GRCh38.d1.vd1 (GDC)		
HPV	HPV15	X74468	GRCh38.d1.vd1 (GDC)		
HPV	HPV17	X74469	GRCh38.d1.vd1 (GDC)		
HPV	HPV19	X74470	GRCh38.d1.vd1 (GDC)		
HPV	HPV20	U31778	GRCh38.d1.vd1 (GDC)		
HPV	HPV21	U31779	GRCh38.d1.vd1 (GDC)		
HPV	HPV22	U31780	GRCh38.d1.vd1 (GDC)		
HPV	HPV23	U31781	GRCh38.d1.vd1 (GDC)		
HPV	HPV24	NC_001683	GRCh38.d1.vd1 (GDC)		
HPV	HPV25	X74471	GRCh38.d1.vd1 (GDC)		
HPV	HPV27	X74473	GRCh38.d1.vd1 (GDC)		
HPV	HPV28	U31783	GRCh38.d1.vd1 (GDC)		
HPV	HPV29	U31784	GRCh38.d1.vd1 (GDC)		
HPV	HPV30	X74474	GRCh38.d1.vd1 (GDC)		
HPV	HPV36	U31785	GRCh38.d1.vd1 (GDC)		
HPV	HPV37	U31786	GRCh38.d1.vd1 (GDC)		
HPV	HPV38	U31787	GRCh38.d1.vd1 (GDC)		
HPV	HPV40	X74478	GRCh38.d1.vd1 (GDC)		
HPV	HPV42	M73236	GRCh38.d1.vd1 (GDC)		
HPV	HPV43	AJ620205	GRCh38.d1.vd1 (GDC)		
HPV	HPV44	U31788	GRCh38.d1.vd1 (GDC)		
HPV	HPV47	M32305	GRCh38.d1.vd1 (GDC)		
HPV	HPV57	X55965	GRCh38.d1.vd1 (GDC)		
HPV	HPV62	AY395706	GRCh38.d1.vd1 (GDC)		
HPV	HPV65	X70829	GRCh38.d1.vd1 (GDC)		
HPV	HPV71	NC_002644	GRCh38.d1.vd1 (GDC)		
HPV	HPV72	X94164	GRCh38.d1.vd1 (GDC)		
HPV	HPV74	AF436130	GRCh38.d1.vd1 (GDC)		
HPV	HPV75	Y15173	GRCh38.d1.vd1 (GDC)		
HPV	HPV76	Y15174	GRCh38.d1.vd1 (GDC)		
HPV	HPV77	Y15175	GRCh38.d1.vd1 (GDC)		
HPV	HPV78	KC138720	GRCh38.d1.vd1 (GDC)		
HPV	HPV80	Y15176	GRCh38.d1.vd1 (GDC)		
HPV	HPV81	AJ620209	GRCh38.d1.vd1 (GDC)		
HPV	HPV83	AF151983	GRCh38.d1.vd1 (GDC)		
HPV	HPV84	AF293960	GRCh38.d1.vd1 (GDC)		
HPV	HPV85	AF131950	GRCh38.d1.vd1 (GDC)		
HPV	HPV86	AF349909	GRCh38.d1.vd1 (GDC)		
HPV	HPV87	AJ400628	GRCh38.d1.vd1 (GDC)		
HPV	HPV89	AF436128	GRCh38.d1.vd1 (GDC)		
HPV	HPV91	AF419318	GRCh38.d1.vd1 (GDC)		
HPV	HPV93	AY382778	GRCh38.d1.vd1 (GDC)		
HPV	HPV94	AJ620211	GRCh38.d1.vd1 (GDC)		
HPV	HPV95	AJ620210	GRCh38.d1.vd1 (GDC)		
HPV	HPV97	DQ080080	GRCh38.d1.vd1 (GDC)		
HPV	HPV98	NC_012744	GRCh38.d1.vd1 (GDC)		
HPV	HPV99	NC_012745	GRCh38.d1.vd1 (GDC)		
HPV	HPV100	NC_012746	GRCh38.d1.vd1 (GDC)		
HPV	HPV102	DQ080083	GRCh38.d1.vd1 (GDC)		
HPV	HPV104	NC_012750	GRCh38.d1.vd1 (GDC)		
HPV	HPV105	NC_012747	GRCh38.d1.vd1 (GDC)		
HPV	HPV106	DQ080082	GRCh38.d1.vd1 (GDC)		
HPV	HPV107	EF422221	GRCh38.d1.vd1 (GDC)		
HPV	HPV110	EU410348	GRCh38.d1.vd1 (GDC)		
HPV	HPV111	EU410349	GRCh38.d1.vd1 (GDC)		
HPV	HPV113	NC_012748	GRCh38.d1.vd1 (GDC)		
HPV	HPV114	NC_013931	GRCh38.d1.vd1 (GDC)		
HPV	HPV115	NC_013591	GRCh38.d1.vd1 (GDC)		
HPV	HPV117	GQ246950	GRCh38.d1.vd1 (GDC)		
HPV	HPV118	GQ246951	GRCh38.d1.vd1 (GDC)		
HPV	HPV119	GQ845441	GRCh38.d1.vd1 (GDC)		
HPV	HPV120	GQ845442	GRCh38.d1.vd1 (GDC)		
HPV	HPV122	GQ845444	GRCh38.d1.vd1 (GDC)		
HPV	HPV123	GQ845445	GRCh38.d1.vd1 (GDC)		
HPV	HPV124	GQ845446	GRCh38.d1.vd1 (GDC)		
HPV	HPV125	FN547152	GRCh38.d1.vd1 (GDC)		
HPV	HPV126	NC_016157	GRCh38.d1.vd1 (GDC)		
HPV	HPV127	NC_014469	GRCh38.d1.vd1 (GDC)		
HPV	HPV130	GU117630	GRCh38.d1.vd1 (GDC)		
HPV	HPV133	GU117633	GRCh38.d1.vd1 (GDC)		
HPV	HPV135	NC_017993	GRCh38.d1.vd1 (GDC)		
HPV	HPV136	NC_017994	GRCh38.d1.vd1 (GDC)		
HPV	HPV137	NC_017995	GRCh38.d1.vd1 (GDC)		
HPV	HPV138	HM999990	GRCh38.d1.vd1 (GDC)		
HPV	HPV139	HM999991	GRCh38.d1.vd1 (GDC)		
HPV	HPV140	NC_017996	GRCh38.d1.vd1 (GDC)		
HPV	HPV141	HM999993	GRCh38.d1.vd1 (GDC)		
HPV	HPV142	HM999994	GRCh38.d1.vd1 (GDC)		
HPV	HPV143	HM999995	GRCh38.d1.vd1 (GDC)		
HPV	HPV144	NC_017997	GRCh38.d1.vd1 (GDC)		
HPV	HPV145	HM999997	GRCh38.d1.vd1 (GDC)		
HPV	HPV146	HM999998	GRCh38.d1.vd1 (GDC)		
HPV	HPV147	HM999999	GRCh38.d1.vd1 (GDC)		
HPV	HPV149	GU117629	GRCh38.d1.vd1 (GDC)		
HPV	HPV150	FN677755	GRCh38.d1.vd1 (GDC)		
HPV	HPV151	FN677756	GRCh38.d1.vd1 (GDC)		
HPV	HPV152	JF304768	GRCh38.d1.vd1 (GDC)		
HPV	HPV153	JN171845	GRCh38.d1.vd1 (GDC)		
HPV	HPV154	NC_021483	GRCh38.d1.vd1 (GDC)		
HPV	HPV155	JF906559	GRCh38.d1.vd1 (GDC)		
HPV	HPV156	JX429973	GRCh38.d1.vd1 (GDC)		
HPV	HPV159	HE963025	GRCh38.d1.vd1 (GDC)		
HPV	HPV160	AB745694	GRCh38.d1.vd1 (GDC)		
HPV	HPV161	JX413109	GRCh38.d1.vd1 (GDC)		
HPV	HPV162	JX413108	GRCh38.d1.vd1 (GDC)		
HPV	HPV163	JX413107	GRCh38.d1.vd1 (GDC)		
HPV	HPV164	JX413106	GRCh38.d1.vd1 (GDC)		
HPV	HPV165	JX444072	GRCh38.d1.vd1 (GDC)		
HPV	HPV166	NC_019023	GRCh38.d1.vd1 (GDC)		
HPV	HPV167	NC_022892	GRCh38.d1.vd1 (GDC)		
HPV	HPV168	KC862317	GRCh38.d1.vd1 (GDC)		
HPV	HPV169	JX413105	GRCh38.d1.vd1 (GDC)		
HPV	HPV170	JX413110	GRCh38.d1.vd1 (GDC)		
HPV	HPV171	KF006398	GRCh38.d1.vd1 (GDC)		
HPV	HPV172	KF006399	GRCh38.d1.vd1 (GDC)		
HPV	HPV173	KF006400	GRCh38.d1.vd1 (GDC)		
HPV	HPV174	HF930491	GRCh38.d1.vd1 (GDC)		
HPV	HPV175	KC108721	GRCh38.d1.vd1 (GDC)		
HPV	HPV178	NC_023891	GRCh38.d1.vd1 (GDC)		
HPV	HPV179	NC_022095	GRCh38.d1.vd1 (GDC)		
HPV	HPV180	KC108722	GRCh38.d1.vd1 (GDC)		
HPV	HPV184	HG530535	GRCh38.d1.vd1 (GDC)		
HPV	HPV197	KM085343	GRCh38.d1.vd1 (GDC)		
HPV	HPV199	KJ913662	GRCh38.d1.vd1 (GDC)		
HPV	HPV-mCG2	JF966378	GRCh38.d1.vd1 (GDC)		
HPV	HPV-mCG3	JF966379	GRCh38.d1.vd1 (GDC)		
HPV	HPV-mCH2	KF791917	GRCh38.d1.vd1 (GDC)		
HPV	HPV-mFD1	JF966375	GRCh38.d1.vd1 (GDC)		
HPV	HPV-mFD2	JF966376	GRCh38.d1.vd1 (GDC)		
HPV	HPV-mFS1	JF966373	GRCh38.d1.vd1 (GDC)		
HPV	HPV-mFi864	KC311731	GRCh38.d1.vd1 (GDC)		
HPV	HPV-mKC5	JX444073	GRCh38.d1.vd1 (GDC)		
HPV	HPV-mKN1	JF966371	GRCh38.d1.vd1 (GDC)		
HPV	HPV-mKN2	JF966372	GRCh38.d1.vd1 (GDC)		
HPV	HPV-mKN3	JF966374	GRCh38.d1.vd1 (GDC)		
HPV	HPV-mL55	KF482069	GRCh38.d1.vd1 (GDC)		
HPV	HPV-mRTRX7	U85660	GRCh38.d1.vd1 (GDC)		
HPV	HPV-mSD2	KC113191	GRCh38.d1.vd1 (GDC)