This archive contain the information about the experiment, the slides, antibodies and the samples.

The array design file shows the locations of the samples on an RPPA slide, spot by spot. Note that
althought there are 4x12=48 subgrids defined by the printing pins (4 rows and 12 columns),
the slide image is quantified as if there are 44 rows and 132 columns of spots on the image
(including 12 columns that are composed completely of controls);  the subgrids
were overridden. The quantification software is MicroVigene, but this is the last set of data
(including LUSC, LUAD, UCEC (batch 2) and HNSC) quantified using this software. The
next set of slides will be quantified using Array-Pro Analyzer (Media Cybernetics, Inc., Rockville, MD).
The two pieces of software give very similar results.

The antibody annotation file contains the quantification file name (containing the slide barcode 
after the composite antibody name),
, composite antibody name, and the gene 
name corresponding to the antibody.


