Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	1	3208470	45793303	22630	-5e-04
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	1	45794143	45794217	2	-2.2322
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	1	45799324	237977595	101551	-2e-04
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	1	237983869	237988757	2	-2.8112
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	1	237991493	238567475	514	0.0071
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	1	238567834	238574234	3	-1.5611
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	1	238574259	245880329	3999	0.0015
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	2	474222	123500876	64666	0.0037
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	2	123502610	123503365	2	-2.3456
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	2	123507020	242124735	66275	0.0029
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	3	526235	199023074	106125	0.0034
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	4	1043934	117870108	64546	8e-04
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	4	117870686	117872812	2	-2.5034
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	4	117874691	189836143	37973	3e-04
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	5	967233	4715521	2393	0.0044
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	5	4717457	4717870	3	1.6272
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	5	4718178	16102300	7488	-0.0033
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	5	16102924	16111289	4	-2.1743
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	5	16111327	91642998	38912	0.003
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	5	91650465	91653902	3	-2.1908
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	5	91654912	112250620	10519	0.0028
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	5	112254560	112255698	2	-2.4435
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	5	112257613	113520862	829	4e-04
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	5	113528450	113624502	68	-1.0194
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	5	113626945	168200485	33158	0.0033
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	5	168200949	168200965	2	-2.6136
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	5	168202822	180293075	6914	-0.0073
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	6	959281	129799043	71418	2e-04
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	6	129799994	129805905	3	-2.2666
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	6	129806058	160881065	19922	-2e-04
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	6	160882493	160882616	2	-2.4785
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	6	160884642	161529269	432	0.0113
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	6	161529890	161530622	3	-1.6549
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	6	161530900	170745844	4483	-0.0018
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	7	671810	14574152	6719	-0.0083
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	7	14585030	14585355	2	-1.9935
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	7	14585551	16276898	1127	-0.0098
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	7	16277031	16279328	3	-1.7774
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	7	16280013	41842444	16056	0.003
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	7	41843488	41844436	2	-2.2671
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	7	41844542	105676497	29590	0.0044
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	7	105677142	105677534	2	-2.6704
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	7	105687471	158077879	27644	0.0054
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	8	607667	17750312	8833	0.0042
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	8	17752434	17753184	2	-1.8653
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	8	17754832	66520718	26582	0.0034
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	8	66522653	66522707	2	-2.9369
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	8	66524710	145304484	45928	0.0037
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	9	779932	120928743	57306	0.0036
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	9	120932460	120932746	2	-2.2612
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	9	120933333	140058573	10497	-0.0087
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	10	405240	100266029	58607	0.0053
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	10	100268047	100268082	2	-2.9952
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	10	100269842	100676128	305	0.0094
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	10	100680042	100680422	2	-2.206
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	10	100699171	135075077	21756	0.0059
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	11	446120	133647740	77015	7e-04
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	12	760163	131671419	73697	0.0028
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	13	18348806	80700642	35977	0.0025
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	13	80703687	80713866	3	-1.6581
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	13	80714011	114005560	20512	-2e-04
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	14	19571208	105059083	49278	-0.0029
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	15	21238778	99701830	44396	0.0025
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	16	593460	87907437	40755	1e-04
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	17	933971	13655337	7121	-8e-04
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	17	13660003	13660155	2	-2.0037
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	17	13661509	47006083	12966	0.0024
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	17	47012830	47013109	2	-1.941
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	17	47017909	78510305	16772	-2e-04
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	18	319586	66749252	38562	0.0036
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	18	66752325	66752632	3	-1.5332
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	18	66753762	75210228	3982	0.0023
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	19	235018	63570038	23867	-0.0092
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	20	403764	61690281	37182	0.0067
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	21	14269492	30560830	10424	0.0085
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	21	30562099	30564908	6	-1.1832
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	21	30572450	34435654	2393	-0.0084
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	21	34436542	34439653	2	-1.7485
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	21	34446885	46503202	7703	0.0015
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	22	15803930	47717016	16884	-0.0064
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	X	3167107	24598753	9110	0.029
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	X	24601593	24601889	2	-5.2289
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	X	24602318	77635384	19965	0.013
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	X	77635717	77637013	2	-5.2925
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	X	77639351	93300265	6558	0.0108
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	X	93300278	93304295	6	-2.7967
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	X	93304392	110144457	7474	0.0107
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	X	110144628	110148759	2	-4.5324
WAGER_p_TCGA_282_284_285_286_N_GenomeWideSNP_6_B04_1359080	X	110149301	154558783	20164	0.021
