Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	1	3208470	11161003	4463	0.4172
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	1	11162520	60316538	26898	0.0154
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	1	60317006	60582206	171	-0.2781
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	1	60588038	245873950	97472	0.014
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	1	245876911	245880329	3	0.446
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	2	474222	237717650	128819	0.0129
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	2	237719106	237909771	147	-0.2533
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	2	237913392	237983594	48	0.0499
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	2	238040929	238790997	478	-0.2552
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	2	238792648	240644974	1015	0.0246
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	2	240649143	241840667	602	-0.282
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	2	241841501	242124735	156	0.0317
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	3	526235	71112098	40649	0.0142
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	3	71116221	73982624	2075	-0.277
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	3	73982912	199023074	63603	0.0091
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	4	1043934	189836143	102714	0.0115
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	5	967233	180293075	100475	0.0107
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	6	959281	16444746	10824	0.0098
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	6	16445337	16858835	346	-0.2707
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	6	16858880	51874055	19337	-0.0026
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	6	51877578	52333625	320	-0.2634
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	6	52344927	170745844	65612	-8e-04
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	7	671810	158077879	81292	0.0139
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	8	607667	145304484	81513	0.0115
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	9	779932	131031941	63564	0.0109
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	9	131035892	132697774	923	-0.2505
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	9	132697817	133265283	363	0.0131
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	9	133270014	134728634	979	-0.2817
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	9	134729047	140058573	2132	0.019
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	405240	27327771	18696	0.0231
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	27332569	27333350	2	-1.2378
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	27342354	39104006	7407	0.0208
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	42267976	49120681	2216	-0.2441
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	49120787	50426040	1035	0.0272
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	50434225	52578172	444	-0.2651
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	52584216	53545948	760	0.0263
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	53547300	55269854	1132	-0.2525
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	55271107	55422831	93	0.0217
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	55435309	56053652	501	-0.2708
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	56062095	74630228	10764	0.0181
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	74630977	78527062	2184	-0.2499
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	78527260	80743521	1822	0.0136
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	80744387	82982465	779	-0.2622
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	82991229	83306244	206	0.0166
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	83306574	88321459	3600	-0.2489
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	88324894	89176476	268	0.0408
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	89176910	90407479	857	-0.2879
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	90407843	93042761	1856	0.0192
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	93043476	97122910	2061	-0.2431
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	97123600	98103323	655	0.0017
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	98109550	99613906	953	-0.2651
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	99617185	102095369	1475	0.0234
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	102098513	103862823	872	-0.2472
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	103868060	115018544	7072	0.0209
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	115020295	115877594	664	-0.2444
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	115877625	126679010	7657	0.0235
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	126679388	135075077	4786	-0.2442
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	11	446120	6597445	2938	0.0194
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	11	6597832	6598244	2	1.8268
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	11	6601515	133647740	74279	0.0159
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	12	760163	43839596	23016	0.0096
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	12	43840561	44336036	304	-0.2519
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	12	44339876	131671419	50601	0.0134
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	13	18348806	114005560	56637	0.0055
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	14	19571208	37427957	9750	0.0292
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	14	37432181	37434603	4	-1.1381
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	14	37436981	105059083	39670	0.0088
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	15	21238778	99701830	44508	0.0124
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	16	593460	3867421	1011	0.0244
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	16	3867861	4479157	315	-0.2746
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	16	4479236	45506983	12702	0.0185
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	16	45507403	87051316	26772	-0.2516
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	16	87053275	87907437	34	0.0642
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	17	933971	4229742	1466	0.0094
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	17	4231842	6034554	925	-0.2259
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	17	6074730	6561536	379	0.0375
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	17	6562230	8111856	618	-0.2544
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	17	8113457	35135111	11875	0.0208
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	17	35136348	37614169	1182	-0.2596
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	17	37618427	78510305	20525	0.019
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	319586	21031079	10578	0.0141
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	21036654	22192860	684	-0.2622
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	22195807	22955820	576	0.0078
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	22956386	23475021	296	-0.2969
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	23475185	28686876	3213	0.0055
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	28700516	29396262	412	-0.2735
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	29396970	31334194	1104	0.0092
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	31335152	31335158	2	-1.354
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	31335739	37497869	3786	0.01
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	37498509	37504430	6	-0.8735
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	37504526	55154757	11309	0.0123
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	55168561	55549013	352	-0.2704
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	55549637	57035290	866	0.0042
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	57035318	58098652	717	-0.2672
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	58099371	64381753	3314	0.0062
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	64381928	65130161	500	-0.2802
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	65131490	65290508	92	0.0802
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	65290563	67064378	1064	-0.2557
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	67066971	69520462	94	0.026
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	69520861	69761923	81	-0.2494
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	69763227	74352282	3151	0.0093
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	74352335	75210228	450	-0.2619
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	19	235018	976362	117	-0.0102
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	19	976540	984226	3	-0.8685
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	19	984298	2382640	293	-0.0422
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	19	2386456	2389119	2	-1.558
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	19	2391102	52348461	18930	0.0105
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	19	52350160	52943859	275	-0.2638
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	19	52971049	63570038	4310	0.0203
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	20	403764	55084338	33016	0.0135
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	20	55086465	55095218	10	-0.5664
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	20	55095921	61690281	4243	0.0169
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	21	14269492	38796890	15832	0.009
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	21	38797458	39104047	165	-0.2565
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	21	39109620	39112391	5	0.4698
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	21	39112406	41655265	2005	-0.2697
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	21	41659407	41786122	171	-0.636
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	21	41786562	46503202	2394	-0.0729
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	22	15803930	41986266	12765	0.0188
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	22	41986646	43015372	824	-0.2704
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	22	43020505	43023677	5	0.4786
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	22	43023903	43197300	91	-0.2261
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	22	43199758	43199904	2	-1.6293
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	22	43201186	45483363	1443	-0.2484
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	22	45484230	47717016	1789	0.0238
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	X	3167107	84770346	32221	0.0056
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	X	84770611	84775505	12	-0.74
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	X	84775621	154558783	31127	7e-04
