Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	1	3218610	11238416	4463	0.4172
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	1	11239933	60543950	26895	0.0154
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	1	60544418	60809618	171	-0.2781
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	1	60815450	247807327	97530	0.0138
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	1	247810288	247813706	3	0.446
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	2	484222	238052911	128811	0.0129
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	2	238054367	238245032	147	-0.2533
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	2	238248653	238318855	48	0.0499
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	2	238376190	239126258	478	-0.2552
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	2	239127909	240996301	1015	0.0246
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	2	241000470	242191994	602	-0.282
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	2	242192828	242476062	156	0.0317
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	3	2212571	71029408	40648	0.0142
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	3	71033531	73899934	2074	-0.277
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	3	73900222	197538677	63599	0.0091
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	4	1053934	127357576	70207	0.0117
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	4	127364125	127365329	6	-0.8878
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	4	127365899	188763651	32506	0.0115
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	5	914233	180360469	100475	0.0107
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	6	1014281	16336767	10825	0.0098
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	6	16337358	16750856	346	-0.2707
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	6	16750901	51766096	19338	-0.0026
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	6	51769619	52225666	320	-0.2634
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	6	52236968	170903919	65619	-8e-04
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	7	705284	158385118	81293	0.0139
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	8	617667	145232496	81520	0.0115
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	9	789932	131992120	63576	0.0109
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	9	131996071	133707953	923	-0.2505
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	9	133707996	134275462	363	0.0131
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	9	134280193	135738813	979	-0.2817
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	9	135739226	140938752	2132	0.019
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	415240	39064000	26105	0.0224
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	42947970	49450675	2216	-0.2441
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	49450781	50756034	1036	0.027
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	50764219	52908166	443	-0.2645
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	52914210	53875942	760	0.0263
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	53877294	55599848	1132	-0.2525
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	55601101	55752825	93	0.0217
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	55765303	56383646	501	-0.2708
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	56392089	74960222	10763	0.0181
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	74960971	78857056	2184	-0.2499
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	78857254	81073515	1822	0.0136
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	81074381	82992485	779	-0.2622
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	83001249	83316264	206	0.0166
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	83316594	88331479	3602	-0.2488
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	88334914	89186496	267	0.0404
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	89186930	90417499	857	-0.2879
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	90417863	93052781	1855	0.0191
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	93053496	97132920	2060	-0.243
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	97133610	98113333	655	0.0017
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	98119560	99623916	953	-0.2651
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	99627195	102105379	1475	0.0234
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	102108523	103872833	872	-0.2472
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	103878070	115028554	7072	0.0209
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	115030305	115887604	664	-0.2444
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	115887635	126689020	7657	0.0235
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	10	126689398	135225087	4786	-0.2442
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	11	456120	6640869	2937	0.0194
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	11	6641256	6641668	2	1.8268
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	11	6644939	134142530	74270	0.0159
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	12	889902	45553329	23012	0.0096
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	12	45554294	46049769	304	-0.2519
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	12	46053609	133161346	50600	0.0134
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	13	19450806	114987458	56633	0.0055
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	14	20501368	38358206	9750	0.0292
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	14	38362430	38364852	4	-1.1381
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	14	38367230	105988038	39668	0.0088
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	15	23687685	101884307	44506	0.0124
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	16	653459	3927420	1011	0.0244
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	16	3927860	4539156	315	-0.2746
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	16	4539235	46949482	12702	0.0185
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	16	46949902	88523815	26707	-0.2516
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	16	88525774	89379936	34	0.0642
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	17	987221	4282993	1466	0.0094
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	17	4285093	6093830	925	-0.2259
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	17	6134006	6620812	379	0.0375
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	17	6621506	8171131	618	-0.2544
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	17	8172732	37881585	11873	0.0208
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	17	37882822	40360643	1182	-0.2596
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	17	40364901	80917016	20527	0.019
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	329586	22777081	10578	0.0141
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	22782656	23938862	684	-0.2622
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	23941809	24701822	576	0.0078
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	24702388	25221023	296	-0.2969
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	25221187	30432878	3213	0.0055
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	30446518	31142264	412	-0.2735
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	31142972	33080196	1104	0.0092
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	33081154	33081160	2	-1.354
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	33081741	39243871	3786	0.01
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	39244511	39250432	6	-0.8735
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	39250528	57003777	11308	0.0122
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	57017581	57398033	352	-0.2704
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	57398657	58884310	866	0.0042
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	58884338	59947672	717	-0.2672
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	59948391	66230773	3312	0.0062
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	66230948	66979181	500	-0.2802
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	66980510	67139528	92	0.0802
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	67139583	68913398	1064	-0.2557
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	68915991	71369482	94	0.026
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	71369881	71610943	81	-0.2494
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	71612247	76251294	3151	0.0093
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	18	76251347	77109240	450	-0.2619
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	19	284018	1025362	117	-0.0102
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	19	1025540	1033226	3	-0.8685
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	19	1033298	2431640	293	-0.0422
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	19	2435456	2438119	2	-1.558
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	19	2440102	47656621	18930	0.0105
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	19	47658320	48252047	275	-0.2638
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	19	48279237	58878226	4310	0.0203
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	20	455764	55650931	33019	0.0135
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	20	55653058	55661811	10	-0.5664
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	20	55662514	62219837	4243	0.0169
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	21	15347621	39875020	15833	0.009
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	21	39875588	40182177	165	-0.2565
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	21	40187750	40190521	5	0.4698
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	21	40190536	42733395	2004	-0.2698
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	21	42737537	42864252	171	-0.636
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	21	42864692	47678774	2393	-0.0729
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	22	17423930	43656322	12764	0.0187
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	22	43656702	44684039	824	-0.2704
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	22	44689172	44692344	5	0.4786
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	22	44692570	44818636	91	-0.2261
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	22	44821094	44821240	2	-1.6293
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	22	44822522	47104699	1443	-0.2484
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	22	47105566	49331012	1789	0.0238
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	X	3157107	84883690	32232	0.0056
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	X	84883955	84888849	12	-0.74
CUPEL_p_TCGAb_370_371_372_NSP_GenomeWideSNP_6_A02_1438524	X	84888965	154905589	31133	6e-04
