Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	1	3208470	56030957	28102	0.0215
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	1	56033402	56035987	2	1.1261
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	1	56039558	168826956	52459	0.0479
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	1	168829707	168878178	30	-0.702
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	1	168880930	228212800	36809	0.0565
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	1	228213090	230384738	1447	-0.1901
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	1	230385414	230472294	67	0.0463
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	1	230473458	230577948	101	-0.1825
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	1	230580065	232694582	1707	0.0613
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	1	232696023	232696150	2	-1.1416
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	1	232702082	245880329	8217	0.0588
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	2	474222	25206100	15666	0.0375
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	2	25210174	25643353	207	-0.2136
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	2	25643487	25875349	112	-0.4935
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	2	25889540	26823515	463	-0.2043
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	2	26823613	70686192	24805	-0.0022
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	2	70686526	75908513	2811	-0.2665
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	2	75909210	234450158	82380	0.0436
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	2	234453473	234455045	2	0.9798
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	2	234455837	242124735	4738	0.0355
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	3	526235	8335701	3447	0.0481
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	3	8414078	8524665	104	-0.1586
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	3	8528394	8663455	120	0.0342
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	3	8663834	12054598	2170	-0.2108
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	3	12058261	31270099	11477	0.0493
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	3	31270126	31270260	2	-1.9132
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	3	31278140	31656917	248	0.0483
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	3	31661810	32132190	300	-0.2103
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	3	32132210	130795679	53027	0.0469
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	3	130796179	130799284	2	-1.5754
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	3	130800275	199023074	35396	0.0016
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	4	1043934	100540388	54836	0.0528
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	4	100540466	100540543	2	-1.4994
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	4	100541468	189836143	47837	0.058
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	5	967233	35232045	20122	0.0482
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	5	35232187	35233127	2	-1.003
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	5	35233780	68354398	16716	0.0218
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	5	68355443	68356524	3	-1.0972
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	5	68356942	71935152	963	-0.1936
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	5	71935188	71937630	2	-1.184
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	5	71942476	95328385	12942	-0.0205
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	5	95336741	108758222	6338	-0.5273
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	5	108776415	149944507	24568	0.0415
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	5	149944552	149945697	3	-1.3897
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	5	149946386	180293075	18760	0.0467
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	6	959281	170745844	96408	-0.0141
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	7	671810	24001652	12174	0.0558
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	7	24006403	24006908	2	-1.5006
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	7	24007342	101422289	39059	0.0491
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	7	101422308	101424005	2	-0.9331
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	7	101430267	158077879	30011	0.0487
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	8	607667	1846655	597	-0.1594
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	8	1847344	1847582	2	-2.3275
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	8	1849752	43018771	24111	-0.12
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	8	43020074	145304484	56749	0.0813
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	9	779932	73542557	25823	0.0373
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	9	73544710	76898038	2043	-0.5159
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	9	76900504	81299075	3200	0.0477
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	9	81306088	84790064	2331	-0.5381
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	9	84791616	85991244	855	0.0343
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	9	85991476	85993647	3	-1.4079
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	9	85995031	112835435	17628	0.0453
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	9	112836255	112842440	5	-0.9276
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	9	112842644	136781725	14922	0.0392
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	9	136782398	136783280	2	-1.5577
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	9	136783873	140058573	1108	0.0214
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	10	405240	43695641	26996	0.045
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	10	43695686	43695918	3	-1.6395
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	10	43696211	74665833	16042	0.0456
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	10	74672001	76696356	873	-0.5065
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	10	76696890	76846000	86	-0.2484
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	10	76854000	78063909	861	-0.524
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	10	78063962	78064077	2	-2.2822
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	10	78064421	89725888	7439	-0.5304
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	10	89727081	90040613	255	-0.7703
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	10	90041015	106229120	9229	-0.5278
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	10	106232356	135075077	18964	0.0418
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	11	446120	133647740	77176	0.0453
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	12	760163	6900326	3758	0.0411
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	12	6902609	14308185	3831	-0.5335
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	12	14311820	112346704	56118	0.0387
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	12	112347313	112352673	3	-1.056
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	12	112353094	131671419	10169	0.0275
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	13	18348806	44319967	16384	0.0505
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	13	44322278	52391729	4081	-0.5188
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	13	52392251	52398579	3	-1.8905
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	13	52399201	102806299	29260	-0.5501
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	13	102809855	114005560	6829	0.028
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	14	19571208	30710046	5524	0.0086
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	14	30712673	39677362	5321	-0.2014
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	14	39691235	89794414	29482	0.0211
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	14	89794556	105059083	9067	-0.1801
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	15	21238778	99701830	44507	0.0446
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	16	593460	53404883	19370	-0.0066
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	16	53404996	53540878	76	-0.357
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	16	53545075	64058217	6714	-0.1057
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	16	64058522	65379861	964	-0.4092
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	16	65383824	87907437	13685	-0.1444
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	17	933971	8243230	3445	-0.1797
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	17	8254579	8254740	3	-1.2817
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	17	8254967	40078034	14063	-0.1279
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	17	40110401	40127931	6	0.797
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	17	40129088	78510305	19429	0.2729
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	18	319586	51374736	29533	-0.0159
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	18	51378476	51384984	7	-1.0516
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	18	51389256	75210228	13088	-0.1381
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	19	235018	63570038	23916	0.0248
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	20	403764	12088099	7409	0.0499
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	20	12090392	12098932	7	-0.6695
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	20	12102771	15377874	1735	0.0443
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	20	15379565	15570573	204	0.2526
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	20	15571823	61690281	27871	0.0342
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	21	14269492	38867261	15883	0.0857
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	21	38867699	38900011	37	-0.5901
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	21	38907086	41764020	2195	0.0445
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	21	41764230	41766000	16	-0.4932
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	21	41770513	46503202	2436	0.0241
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	22	15803930	47717016	16898	0.0308
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	X	3167107	11653359	2489	0.0013
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	X	11653475	11653727	2	-2.9067
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	X	11654635	135380228	51927	0.0017
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	X	135380977	135381450	3	-1.8658
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	X	135381531	144380505	4216	0.0047
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	X	144380825	144381645	2	-2.502
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	X	144382096	154558783	4325	7e-04
