Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	1	3218610	170560332	80619	0.0386
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	1	170563083	170611554	30	-0.702
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	1	170614306	230146177	36810	0.0565
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	1	230146467	232318115	1446	-0.1902
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	1	232318791	232405671	67	0.0463
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	1	232406835	232511325	101	-0.1825
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	1	232513442	234627959	1707	0.0613
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	1	234629400	234629527	2	-1.1416
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	1	234635459	247813706	8216	0.0587
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	2	484222	25352596	15664	0.0375
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	2	25356670	25789849	207	-0.2136
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	2	25789983	26021845	112	-0.4935
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	2	26036036	26970011	463	-0.2043
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	2	26970109	70832684	24800	-0.0023
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	2	70833018	76055005	2812	-0.2664
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	2	76055702	234785419	82377	0.0436
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	2	234788734	234790306	2	0.9798
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	2	234791098	242476062	4739	0.0356
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	3	2212571	8360701	3446	0.0479
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	3	8439078	8549665	104	-0.1586
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	3	8553394	8688455	120	0.0342
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	3	8688834	12079598	2169	-0.2113
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	3	12083261	31295095	11477	0.0492
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	3	31295122	31295256	2	-1.9132
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	3	31303136	31681913	248	0.0483
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	3	31686806	32157186	300	-0.2103
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	3	32157206	129312989	53024	0.0469
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	3	129313489	129316594	2	-1.5754
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	3	129317585	197538677	35395	0.0016
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	4	1053934	100321365	54836	0.0528
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	4	100321443	100321520	2	-1.4994
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	4	100322445	188763651	47842	0.058
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	5	914233	35196288	20124	0.0483
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	5	35196430	35197370	2	-1.003
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	5	35198023	68318642	16714	0.0218
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	5	68319687	68320768	3	-1.0972
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	5	68321186	71899396	964	-0.1936
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	5	71899432	71901874	2	-1.184
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	5	71906720	95302629	12942	-0.0205
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	5	95310985	108730323	6337	-0.5273
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	5	108748516	149964314	24569	0.0415
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	5	149964359	149965504	3	-1.3897
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	5	149966193	180360469	18759	0.0467
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	6	1014281	170903919	96417	-0.0141
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	7	705284	24035127	12176	0.0558
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	7	24039878	24040383	2	-1.5006
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	7	24040817	101635569	39057	0.0491
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	7	101635588	101637285	2	-0.9331
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	7	101643547	158385118	30012	0.0486
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	8	617667	1859248	598	-0.1589
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	8	1859937	1860175	2	-2.3275
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	8	1862345	42899614	24110	-0.12
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	8	42900917	145232496	56756	0.0812
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	9	789932	74352737	25829	0.0373
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	9	74354890	77708218	2044	-0.5156
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	9	77710684	82109255	3199	0.0477
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	9	82116268	85600244	2332	-0.5379
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	9	85601796	86801424	855	0.0343
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	9	86801656	86803827	3	-1.4079
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	9	86805211	113795614	17632	0.0453
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	9	113796434	113802619	5	-0.9276
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	9	113802823	137641904	14923	0.0392
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	9	137642577	137643459	2	-1.5577
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	9	137644052	140938752	1108	0.0214
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	10	415240	44375635	26996	0.045
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	10	44375680	44375912	3	-1.6395
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	10	44376205	74995827	16041	0.0456
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	10	75001995	77026350	873	-0.5065
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	10	77026884	77175994	86	-0.2484
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	10	77183994	78393903	861	-0.524
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	10	78393956	78394071	2	-2.2822
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	10	78394415	89735908	7440	-0.5302
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	10	89737101	90050633	255	-0.7703
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	10	90051035	106239130	9227	-0.5278
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	10	106242366	135225087	18964	0.0418
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	11	456120	69844113	36595	0.0451
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	11	69845685	69846002	2	-1.4923
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	11	69846204	119553678	30435	0.0471
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	11	119559027	119561022	5	-1.4788
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	11	119564087	134142530	10129	0.0418
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	12	889902	7030065	3758	0.0411
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	12	7032348	14416918	3829	-0.5332
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	12	14420553	113862321	56116	0.0387
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	12	113862930	113868290	3	-1.056
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	12	113868711	133161346	10168	0.0275
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	13	19450806	45421967	16382	0.0504
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	13	45424278	53493728	4081	-0.5187
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	13	53494250	53500578	3	-1.8905
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	13	53501200	104008298	29258	-0.5501
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	13	104011854	114987458	6829	0.028
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	14	20501368	31640295	5524	0.0086
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	14	31642922	40607611	5320	-0.2015
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	14	40621484	90724661	29481	0.0211
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	14	90724803	105988038	9067	-0.1801
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	15	23687685	101884307	44505	0.0446
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	16	653459	54847382	19370	-0.0066
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	16	54847495	54983377	76	-0.357
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	16	54987574	65500716	6714	-0.1057
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	16	65501021	66822360	964	-0.4092
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	16	66826323	89379936	13620	-0.1446
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	17	987221	8302505	3445	-0.1797
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	17	8313854	8314015	3	-1.2817
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	17	8314242	42722508	14061	-0.1279
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	17	42754875	42772405	6	0.797
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	17	42773562	80917016	19431	0.2728
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	18	329586	53223738	29532	-0.0159
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	18	53227478	53233986	7	-1.0516
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	18	53238258	77109240	13086	-0.1381
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	19	284018	58878226	23916	0.0248
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	20	455764	12140099	7412	0.0497
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	20	12142392	12150932	7	-0.6695
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	20	12154771	15429874	1735	0.0443
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	20	15431565	15622573	204	0.2526
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	20	15623823	62219837	27871	0.0342
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	21	15347621	39945391	15884	0.0857
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	21	39945829	39978141	37	-0.5901
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	21	39985216	42842150	2194	0.0445
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	21	42842360	42844130	16	-0.4932
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	21	42848643	47678774	2435	0.0242
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	22	17423930	49331012	16897	0.0308
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	X	3157107	11743438	2490	0.0015
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	X	11743554	11743806	2	-2.9067
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	X	11744714	135552562	51949	0.0018
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	X	135553311	135553784	3	-1.8658
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	X	135553865	144572813	4211	0.0047
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	X	144573133	144573953	2	-2.502
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_G11_1439072	X	144574404	154905589	4324	8e-04
