Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	3208470	59527872	30915	0.0332
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	59527873	59529637	7	0.6056
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	59531871	208096793	73874	0.0091
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	208097761	208097954	4	-0.8826
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	208105625	230809956	14485	0.0135
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	230816806	231055088	135	-0.6165
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	231056880	239677206	6396	0.022
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	239682296	240448460	497	0.7317
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	240451661	240585992	73	0.4541
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	240586655	241103555	437	0.7443
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	241103578	241108890	5	0.1564
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	241110904	241599267	84	0.7273
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	241604731	241625946	15	-0.5709
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	241627845	243058860	842	0.7171
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	243060765	243088007	15	-0.5254
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	243088498	243529330	243	0.7547
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	243534404	245322170	659	-0.5976
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	245326194	245880329	317	0.7106
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	2	474222	41212556	24077	0.0163
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	2	41212571	41221024	8	-0.5656
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	2	41223882	153639423	56396	0.0059
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	2	153648949	153740091	50	-0.6402
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	2	153748480	175907811	13057	-0.0061
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	2	175908235	175918918	7	-0.6241
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	2	175920636	242124735	37640	0.0011
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	3	526235	199023074	106327	0.0077
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	4	1043934	28925172	17665	0.0239
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	4	28927337	28927347	2	-1.334
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	4	28927363	95772394	34478	0.0056
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	4	95776374	96014162	123	-0.6828
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	4	96016472	120473301	13812	-0.0018
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	4	120477572	120477655	2	-1.5105
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	4	120480233	189836143	36610	-7e-04
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	5	967233	173921387	97475	0.0053
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	5	173921841	173929151	11	-0.5836
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	5	173929873	178829225	2291	0.0362
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	5	178829257	178829480	3	0.7983
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	5	178832339	180293075	674	0.0286
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	6	959281	50694661	29709	0.0118
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	6	50701944	50704610	5	-0.6594
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	6	50709666	170745844	66710	0.004
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	7	671810	147563073	76069	0.0087
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	7	147565572	147565710	2	-1.038
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	7	147567496	157997872	5186	0.0288
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	7	158029702	158077879	20	-0.5034
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	8	607667	35988967	20885	-0.6043
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	8	35993699	38410480	1165	0.7249
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	8	38410503	38411256	9	0.2661
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	8	38411389	93074852	28169	0.7161
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	8	93074898	93089305	25	0.3716
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	8	93089764	95625635	1505	0.7033
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	8	95625726	95645526	18	0.2795
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	8	95647525	145304484	29687	0.7164
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	9	779932	7711860	4155	-0.5993
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	9	7712231	7712497	4	-1.8844
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	9	7714119	9214376	1046	-0.638
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	9	9214800	10805300	759	0.0023
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	9	10806593	10820024	11	-0.585
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	9	10821374	10937717	65	0.0339
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	9	10942730	11121184	76	-0.607
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	9	11121371	103312324	39341	0.02
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	9	103312724	107045435	2178	-0.6035
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	9	107058418	140058573	20307	0.033
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	10	405240	4235304	2234	0.0378
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	10	4236081	6427136	1646	-0.5759
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	10	6427760	6427998	2	-2.351
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	10	6429476	21865415	11392	-0.5739
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	10	21871696	135075077	65518	0.0273
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	446120	78559820	41547	0.0202
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	78560085	78578617	18	-0.5929
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	78587706	79013239	368	0.7492
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	79015628	79100761	72	-0.0037
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	79101145	79444586	213	-0.6281
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	79444737	80563413	842	0.0178
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	80564484	80602889	23	-0.6889
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	80603599	80642171	31	0.0236
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	80644000	80648799	7	-0.2716
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	80648910	80653158	6	-0.7405
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	80655719	81308632	401	0.0063
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	81309300	82092168	416	-0.5942
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	82092175	82100988	8	0.0464
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	82104086	82282783	111	0.7365
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	82295931	82313715	11	-0.0091
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	82314661	84114693	991	-0.6213
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	84185427	91134747	4136	0.006
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	91135832	93880714	1494	0.7262
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	93886568	93898953	19	-0.6539
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	93899239	93906832	8	-0.1092
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	93909165	93910420	4	-0.8332
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	93919433	95726185	1373	0.7057
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	95730155	95749802	11	-0.2928
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	95753089	95823204	27	0.7492
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	95823847	113229966	10858	-0.6016
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	113230861	113388158	100	-1.9792
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	113388547	113399089	9	-5.0999
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	113399266	114955498	1104	-1.8348
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	114955759	114957930	3	-7.5602
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	114959468	115693159	554	-2.0087
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	115693414	133647740	12390	-0.5707
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	12	760163	9780343	4802	0.0347
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	12	9785428	14696074	2984	-0.5909
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	12	14699544	70650470	30791	0.0128
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	12	70651371	70743125	58	-0.6189
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	12	70751324	70813279	29	-0.0652
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	12	70815769	75406659	2459	-0.6184
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	12	75410006	86954324	6805	-0.0027
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	12	86966577	87917312	539	-0.6376
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	12	87921334	87924941	2	-1.907
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	12	87927202	88440060	293	-0.6135
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	12	88446362	131671419	25145	0.0254
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	13	18348806	50756960	19756	0.0105
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	13	50761533	50772174	9	-0.6141
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	13	50772920	114005560	36861	0.0028
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	14	19571208	105059083	49415	0.0169
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	15	21238778	99701830	44521	0.0343
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	16	593460	45237714	13919	0.0507
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	16	45240818	45250951	6	-0.6513
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	16	45256718	45726024	198	0.0425
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	16	45728789	69457612	14696	-0.5659
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	16	69482282	69483973	2	-2.4348
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	16	69484579	87907437	11996	-0.5714
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	17	933971	6872864	2892	0.0566
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	17	6874312	16137721	4792	-0.5428
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	17	16139620	78510305	29267	0.0328
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	18	319586	75210228	42650	0.027
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	19	235018	1455679	230	0.0191
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	19	1456456	3837674	628	-0.522
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	19	3846676	63570038	23068	0.0409
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	20	403764	32935869	18545	0.0308
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	20	32941475	32942042	3	-0.8707
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	20	32947415	61690281	18694	0.0386
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	21	14269492	24507255	6191	0.0137
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	21	24510120	24510210	3	-1.0405
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	21	24510827	38848215	9668	0.0249
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	21	38848783	41794280	2340	-0.5601
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	21	41797274	46503202	2367	0.0378
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	22	15803930	47717016	16911	0.0554
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	X	3167107	26768421	10115	0.0051
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	X	26768985	26770267	2	-1.9011
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	X	26773539	97071398	26792	-0.002
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	X	97074356	97078517	3	-1.8769
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	X	97078576	154558783	26214	0.0028
