Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	3218610	18230535	7823	0.0355
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	18232574	18233159	2	-1.1014
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	18236619	59755284	23087	0.0325
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	59755285	59757049	7	0.6056
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	59759283	70924375	7435	0.0165
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	70924781	70926472	2	-2.4348
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	70927078	71046778	116	-0.0348
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	71046895	71050557	7	-0.6326
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	71050632	71107800	42	-0.0729
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	71110354	71115381	3	-0.8265
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	71115720	210030170	66331	0.008
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	210031138	210031331	4	-0.8826
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	210039002	232743333	14483	0.0135
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	232750183	232988465	135	-0.6165
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	232990257	241610583	6396	0.022
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	241615673	242381837	497	0.7317
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	242385038	242519369	73	0.4541
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	242520032	243036932	437	0.7443
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	243036955	243042267	5	0.1564
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	243044281	243532644	83	0.7294
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	243538108	243559323	15	-0.5709
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	243561222	244992237	842	0.7171
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	244994142	245021384	15	-0.5254
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	245021875	245462707	243	0.7547
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	245467781	247255547	659	-0.5976
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	1	247259571	247813706	317	0.7106
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	2	484222	41359052	24075	0.0163
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	2	41359067	41367520	8	-0.5656
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	2	41370378	153931177	56387	0.0059
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	2	153940703	154031845	50	-0.6402
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	2	154040234	176199565	13059	-0.0061
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	2	176199989	176210672	7	-0.6241
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	2	176212390	242476062	37641	0.0011
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	3	2212571	197538677	106321	0.0077
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	4	1053934	29316074	17665	0.0238
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	4	29318239	29318249	2	-1.334
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	4	29318265	95553371	34477	0.0056
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	4	95557351	95795139	123	-0.6828
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	4	95797449	120253853	13815	-0.0018
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	4	120258124	120258207	2	-1.5105
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	4	120260785	188763651	36613	-7e-04
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	5	914233	173988781	97474	0.0053
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	5	173989235	173996545	11	-0.5836
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	5	173997267	180360469	2969	0.0352
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	6	1014281	50586702	29710	0.0118
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	6	50593985	50596651	5	-0.6594
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	6	50601707	170903919	66718	0.004
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	7	705284	147932140	76070	0.0087
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	7	147934639	147934777	2	-1.038
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	7	147936563	158305111	5186	0.0288
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	7	158336941	158385118	20	-0.5034
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	8	617667	35869425	20885	-0.6042
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	8	35874157	38291323	1165	0.7249
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	8	38291346	38292099	9	0.2661
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	8	38292232	93005676	28172	0.716
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	8	93005722	93020129	25	0.3716
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	8	93020588	95556459	1505	0.7033
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	8	95556550	95576350	18	0.2795
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	8	95578349	145232496	29691	0.7163
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	9	789932	7721860	4155	-0.5993
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	9	7722231	7722497	4	-1.8844
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	9	7724119	9224376	1046	-0.638
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	9	9224800	10815300	759	0.0023
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	9	10816593	10830024	11	-0.585
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	9	10831374	10947717	65	0.0339
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	9	10952730	11131184	76	-0.607
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	9	11131371	104272503	39349	0.02
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	9	104272903	108005614	2178	-0.6035
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	9	108018597	140938752	20311	0.033
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	10	415240	4245304	2234	0.0378
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	10	4246081	6387130	1646	-0.5759
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	10	6387754	6387992	2	-2.351
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	10	6389470	21825409	11392	-0.5739
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	10	21831690	135225087	65516	0.0273
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	456120	78882172	41544	0.0202
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	78882437	78900969	18	-0.5929
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	78910058	79335591	368	0.7492
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	79337980	79423113	72	-0.0037
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	79423497	79766938	213	-0.6281
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	79767089	80885765	842	0.0178
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	80886836	80925241	23	-0.6889
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	80925951	80964523	31	0.0236
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	80966352	80971151	7	-0.2716
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	80971262	80975510	6	-0.7405
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	80978071	81630984	400	0.0057
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	81631652	82414520	416	-0.5942
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	82414527	82423340	8	0.0464
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	82426438	82605135	111	0.7365
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	82618283	82636067	11	-0.0091
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	82637013	84437045	991	-0.6213
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	84507779	91495099	4135	0.0061
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	91496184	94241066	1493	0.7262
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	94246920	94259305	19	-0.6539
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	94259591	94267184	8	-0.1092
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	94269517	94270772	4	-0.8332
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	94279785	96086537	1373	0.7057
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	96090507	96110154	11	-0.2928
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	96113441	96183556	27	0.7492
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	96184199	113724756	10854	-0.6017
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	113725651	113882948	100	-1.9792
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	113883337	113893879	9	-5.0999
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	113894056	115450288	1104	-1.8348
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	115450549	115452720	3	-7.5602
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	115454258	116187949	554	-2.0087
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	11	116188204	134142530	12390	-0.5707
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	12	889902	9889076	4801	0.0347
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	12	9894161	14804807	2983	-0.5909
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	12	14808277	72364203	30788	0.0128
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	12	72365104	72456858	58	-0.6189
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	12	72465057	72527012	29	-0.0652
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	12	72529502	76882528	2459	-0.6184
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	12	76885875	88430193	6806	-0.0027
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	12	88442446	89393181	539	-0.6376
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	12	89397203	89400810	2	-1.907
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	12	89403071	89915929	293	-0.6135
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	12	89922231	133161346	25144	0.0254
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	13	19450806	51858959	19754	0.0105
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	13	51863532	51874173	9	-0.6141
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	13	51874919	114987458	36859	0.0028
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	14	20501368	105988038	49413	0.0169
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	15	23687685	101884307	44519	0.0342
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	16	653459	46680213	13919	0.0507
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	16	46683317	46693450	6	-0.6513
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	16	46699217	47168523	198	0.0425
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	16	47171288	89379936	26628	-0.5686
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	17	987221	6932140	2892	0.0566
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	17	6933588	16196996	4792	-0.5428
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	17	16198895	80917016	29267	0.0328
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	18	329586	77109240	42647	0.027
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	19	284018	1504679	230	0.0191
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	19	1505456	3886674	628	-0.522
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	19	3895676	58878226	23068	0.0409
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	20	455764	33472208	18548	0.0308
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	20	33477814	33478381	3	-0.8707
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	20	33483754	62219837	18694	0.0386
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	21	15347621	25585384	6191	0.0137
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	21	25588249	25588339	3	-1.0405
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	21	25588956	39926345	9669	0.0249
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	21	39926913	42872410	2339	-0.5602
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	21	42875404	47678774	2366	0.0378
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	22	17423930	49331012	16910	0.0553
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	X	3157107	26858500	10116	0.005
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	X	26859064	26860346	2	-1.9011
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	X	26863618	97184742	26802	-0.0019
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	X	97187700	97191861	3	-1.8769
NICHE_p_TCGAb3_67_68_69_70_NSP_GenomeWideSNP_6_H07_1439028	X	97191920	154905589	26220	0.0028
