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The correct tcgaBarcode is TCGA-BH-A0HN-01A-11R-A10V-13.", "addedBy" : "bowenj", "noteId" : "14561" } ], "id" : "15117", "createdBy" : "bowenj", "rescinded" : "0", "dateCreated" : "21-JAN-13", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryId" : "2", "annotationClassification" : { "annotationClassificationName" : "Redaction", "annotationClassificationId" : "5" }, "categoryName" : "Tumor type incorrect" } } }, { "id" : "15126", "notes" : [ { "noteId" : "15443", "addedBy" : "jensenma", "noteText" : "This annotation was rescinded by jensenma on 4/23/13 5:12 PM", "dateAdded" : "23-APR-13" }, { "noteText" : "SDRF in broad.mit.edu_PAAD.Genome_Wide_SNP_6.mage-tab.1.2003.0 flagged aliquot to be excluded for analysis based on file 'SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A05_801994.birdseed.data.txt'.", "addedBy" : "DCC", "noteId" : "14571", "dateAdded" : "24-JAN-13" } ], "items" : [ { "uuid" : "5ec05d6b-fe1b-47f7-a5f3-26320058e6d4", "disease" : { "abbreviation" : "PAAD", "description" : "Pancreatic adenocarcinoma", "diseaseId" : "27" }, "item" : "TCGA-FQ-6554-11A-01D-1794-01", "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" } } ], "createdBy" : "DCC", "dateCreated" : "24-JAN-13", "rescinded" : "1", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationName" : "CenterNotification", "annotationClassificationId" : "2" }, "categoryId" : "29", "categoryName" : "Item flagged DNU" } } }, { "items" : [ { "disease" : { "diseaseId" : "27", "abbreviation" : "PAAD", "description" : "Pancreatic adenocarcinoma" }, "uuid" : "6441d865-fc73-4f52-9802-45acd320b78b", "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" }, "item" : "TCGA-FQ-6555-11A-02D-1794-01" } ], "id" : "15127", "notes" : [ { "dateAdded" : "23-APR-13", "noteText" : "This annotation was rescinded by jensenma on 4/23/13 5:12 PM", "noteId" : "15444", "addedBy" : "jensenma" }, { "noteText" : "SDRF in broad.mit.edu_PAAD.Genome_Wide_SNP_6.mage-tab.1.2003.0 flagged aliquot to be excluded for analysis based on file 'SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A06_801998.birdseed.data.txt'.", "noteId" : "14572", "addedBy" : "DCC", "dateAdded" : "24-JAN-13" } ], "createdBy" : "DCC", "rescinded" : "1", "dateCreated" : "24-JAN-13", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationName" : "CenterNotification", "annotationClassificationId" : "2" }, "categoryId" : "29", "categoryName" : "Item flagged DNU" } } }, { "dateCreated" : "24-JAN-13", "rescinded" : "0", "id" : "15133", "notes" : [ { "noteText" : "Testing, please ignore.", "noteId" : "14578", "addedBy" : "snyderee", "dateAdded" : "24-JAN-13" } ], "items" : [ { "item" : "TCGA-00-0000-01A-01A-0000-01", "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" }, "uuid" : "", "disease" : { "diseaseId" : "38", "description" : "Miscellaneous", "abbreviation" : "MISC" } } ], "createdBy" : "snyderee", "annotationCategory" : { "annotationCategory" : { "categoryId" : "30", "annotationClassification" : { "annotationClassificationName" : "Observation", "annotationClassificationId" : "1" }, "categoryName" : "General" } }, "approved" : "0" }, { "createdBy" : "bowenj", "notes" : [ { "dateAdded" : "25-JAN-13", "addedBy" : "bowenj", "noteId" : "14677", "noteText" : "No aliquots from subject UUID: 2d7390d0-4adf-44f4-a246-fb46bd56d34d should have been shipped, because DNA analyte UUID: b3edf23f-faad-4d53-808b-401bbd76445e failed to qualify at the BCR due to insufficient normal DNA yield. However, RNA aliquots TCGA-BH-A0HM-01A-11R-A10U-07 and TCGA-BH-A0HM-01A-11R-A10V-13 inadvertently shipped when RNA aliquot UUID: 737d212c-43cd-4925-a6a5-568964075a0d was incorrectly assigned tcgaBarcode TCGA-C4-A0EZ-01A-21R-A10U-07 and RNA aliquot UUID: a979613c-5f14-47e9-a153-197552c289e6 was incorrectly assigned to TCGA-C4-A0EZ-01A-21R-A10V-13, which did pass for yield and QC." } ], "id" : "15231", "items" : [ { "itemType" : { "itemTypeId" : "3", "itemTypeName" : "Case" }, "item" : "TCGA-BH-A0HM", "disease" : { "abbreviation" : "BRCA", "description" : "Breast invasive carcinoma", "diseaseId" : "5" }, "uuid" : "" } ], "dateCreated" : "25-JAN-13", "rescinded" : "0", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryId" : "10", "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" }, "categoryName" : "Molecular analysis outside specification" } } }, { "createdBy" : "bowenj", "notes" : [ { "noteId" : "14681", "addedBy" : "bowenj", "noteText" : "RNA aliquot UUID: a979613c-5f14-47e9-a153-197552c289e6 is from a patient that failed to qualify at the BCR due to insufficient normal DNA yield, but inadvertently shipped when incorrectly assigned tcgaBarcode TCGA-C4-A0EZ-01A-21R-A10V-13.", "dateAdded" : "25-JAN-13" } ], "id" : "15238", "items" : [ { "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" }, "item" : "TCGA-BH-A0HM-01A-11R-A10V-13", "disease" : { "abbreviation" : "BRCA", "description" : "Breast invasive carcinoma", "diseaseId" : "5" }, "uuid" : "" } ], "dateCreated" : "25-JAN-13", "rescinded" : "0", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryId" : "243", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryName" : "Barcode incorrect" } } }, { "createdBy" : "bowenj", "id" : "15239", "notes" : [ { "dateAdded" : "25-JAN-13", "noteText" : "RNA aliquot UUID: 737d212c-43cd-4925-a6a5-568964075a0d is from a patient that failed to qualify at the BCR due to insufficient normal DNA yield, but inadvertently shipped when incorrectly assigned tcgaBarcode TCGA-C4-A0EZ-01A-21R-A10U-07.", "addedBy" : "bowenj", "noteId" : "14682" } ], "items" : [ { "disease" : { "description" : "Breast invasive carcinoma", "abbreviation" : "BRCA", "diseaseId" : "5" }, "uuid" : "", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "item" : "TCGA-BH-A0HM-01A-11R-A10U-07" } ], "dateCreated" : "25-JAN-13", "rescinded" : "0", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "categoryId" : "243", "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" } } } }, { "id" : "1529", "notes" : [ { "noteId" : "838", "addedBy" : "DCC", "noteText" : "Tumor Adjacent Normal", "dateAdded" : "14-MAR-11" } ], "items" : [ { "item" : "TCGA-06-0216-01A-01T", 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"dateAdded" : "26-FEB-13" }, { "noteText" : "This annotation was rescinded by nareshr on 6/20/14 9:35 AM", "addedBy" : "nareshr", "noteId" : "20377", "dateAdded" : "20-JUN-14" } ], "items" : [ { "itemType" : { "itemTypeName" : "Case", "itemTypeId" : "3" }, "item" : "TCGA-AA-3612", "disease" : { "diseaseId" : "24", "abbreviation" : "READ", "description" : "Rectum adenocarcinoma" }, "uuid" : "" } ] }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryId" : "6", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryName" : "Prior malignancy" } }, "notes" : [ { "noteText" : "Prior malignancy of the larynx treated with chemotherapy and radiation.", "noteId" : "14785", "addedBy" : "jensenma", "dateAdded" : "26-FEB-13" } ], "id" : "15342", "items" : [ { "item" : "TCGA-CG-4629", "itemType" : { "itemTypeName" : "Case", "itemTypeId" : "3" }, "uuid" : "", "disease" : { "diseaseId" : "4", 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], "id" : "15345", "notes" : [], "annotationCategory" : { "annotationCategory" : { "categoryId" : "201", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryName" : "History of unacceptable prior treatment related to a prior/other malignancy" } }, "approved" : "1" }, { "annotationCategory" : { "annotationCategory" : { "categoryName" : "Item is noncanonical", "categoryId" : "21", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" } } }, "approved" : "1", "rescinded" : "0", "dateCreated" : "14-MAR-11", "createdBy" : "DCC", "items" : [ { "disease" : { "description" : "Glioblastoma multiforme", "abbreviation" : "GBM", "diseaseId" : "1" }, "uuid" : "f7c0f6a2-2c13-4621-ac3e-9848ce00702a", "itemType" : { "itemTypeId" : "2", "itemTypeName" : "Analyte" }, "item" : "TCGA-06-0119-01A-08T" } ], "id" : "1539", "notes" : [ { "addedBy" : "DCC", "noteId" : "848", 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"TCGA-20-0990-01A-01T-0436-07", "disease" : { "diseaseId" : "2", "abbreviation" : "OV", "description" : "Ovarian serous cystadenocarcinoma" }, "uuid" : "" } ], "notes" : [ { "dateAdded" : "02-OCT-13", "noteText" : "Correct Barcode is TTCGA-20-0990-01A-01T-0436-07", "addedBy" : "pihltd", "noteId" : "17214" } ], "id" : "17731", "rescinded" : "0", "dateCreated" : "02-OCT-13" }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Inadvertently shipped", "annotationClassification" : { "annotationClassificationId" : "5", "annotationClassificationName" : "Redaction" }, "categoryId" : "241" } }, "items" : [ { "disease" : { "description" : "Ovarian serous cystadenocarcinoma", "abbreviation" : "OV", "diseaseId" : "2" }, "uuid" : "", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "item" : "TCGA-20-0991-01A-01T-0436-07" } ], "notes" : [ { "noteId" : "17215", "addedBy" : "pihltd", "noteText" : "Correct Barcode is TTCGA-20-0991-01A-01T-0436-07", "dateAdded" : "02-OCT-13" } ], "id" : "17732", "createdBy" : "pihltd", "rescinded" : "0", "dateCreated" : "02-OCT-13" }, { "createdBy" : "pihltd", "id" : "17733", "notes" : [ { "dateAdded" : "02-OCT-13", "addedBy" : "pihltd", "noteId" : "17216", "noteText" : "Correct Barcode is TTCGA-23-1021-01B-01T-0438-07" } ], "items" : [ { "disease" : { "diseaseId" : "2", "abbreviation" : "OV", "description" : "Ovarian serous cystadenocarcinoma" }, "uuid" : "", "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" }, "item" : "TCGA-23-1021-01B-01T-0436-07" } ], "dateCreated" : "02-OCT-13", "rescinded" : "0", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryId" : "241", "annotationClassification" : { "annotationClassificationId" : "5", "annotationClassificationName" : "Redaction" }, "categoryName" : "Inadvertently shipped" } } }, { "items" : [ { "uuid" : "", "disease" : { "diseaseId" : "2", "abbreviation" : "OV", "description" : "Ovarian serous cystadenocarcinoma" }, "item" : "TCGA-23-1022-01A-01T-0436-07", "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" } } ], "notes" : [ { "dateAdded" : "02-OCT-13", "noteText" : "Correct Barcode is TTCGA-23-1022-01A-01T-0436-07", "addedBy" : "pihltd", "noteId" : "17217" } ], "id" : "17734", "createdBy" : "pihltd", "rescinded" : "0", "dateCreated" : "02-OCT-13", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Inadvertently shipped", "categoryId" : "241", "annotationClassification" : { "annotationClassificationName" : "Redaction", "annotationClassificationId" : "5" } } } }, { "createdBy" : "pihltd", "notes" : [ { "noteId" : "17218", "addedBy" : "pihltd", "noteText" : "Correct Barcode is TTCGA-23-1024-01A-02T-0438-07", "dateAdded" : "02-OCT-13" } ], "id" : "17735", "items" : [ { "disease" : { "description" : "Ovarian serous cystadenocarcinoma", "abbreviation" : "OV", "diseaseId" : "2" }, "uuid" : "", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "item" : "TCGA-23-1024-01A-02T-0436-07" } ], "dateCreated" : "02-OCT-13", "rescinded" : "0", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationId" : "5", "annotationClassificationName" : "Redaction" }, "categoryId" : "241", "categoryName" : "Inadvertently shipped" } } }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Inadvertently shipped", "categoryId" : "241", "annotationClassification" : { "annotationClassificationId" : "5", "annotationClassificationName" : "Redaction" } } }, "notes" : [ { "dateAdded" : "02-OCT-13", "noteId" : "17219", "addedBy" : "pihltd", "noteText" : "Correct Barcode is TTCGA-23-1026-01B-01T-0436-07" } ], "id" : "17736", "items" : [ { "uuid" : "", "disease" : { "abbreviation" : "OV", "description" : "Ovarian serous cystadenocarcinoma", "diseaseId" : "2" }, "item" : "TCGA-23-1026-01B-01T-0436-07", "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" } } ], "createdBy" : "pihltd", "dateCreated" : "02-OCT-13", "rescinded" : "0" }, { "createdBy" : "pihltd", "id" : "17737", "notes" : [ { "dateAdded" : "02-OCT-13", "noteText" : "Correct Barcode is TTCGA-23-1027-01A-02T-0438-07", "noteId" : "17220", "addedBy" : "pihltd" } ], "items" : [ { "item" : "TCGA-23-1027-01A-02T-0436-07", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "uuid" : "", "disease" : { "description" : "Ovarian serous cystadenocarcinoma", "abbreviation" : "OV", "diseaseId" : "2" } } ], "dateCreated" : "02-OCT-13", "rescinded" : "0", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Inadvertently shipped", "categoryId" : "241", "annotationClassification" : { "annotationClassificationId" : "5", "annotationClassificationName" : "Redaction" } } } }, { "createdBy" : "pihltd", "notes" : [ { "dateAdded" : "02-OCT-13", "noteText" : "Correct Barcode is TTCGA-23-1028-01A-01T-0438-07", "noteId" : "17221", "addedBy" : "pihltd" } ], "id" : "17738", "items" : [ { "uuid" : "", "disease" : { "diseaseId" : "2", "abbreviation" : "OV", "description" : "Ovarian serous cystadenocarcinoma" }, "item" : "TCGA-23-1028-01A-01T-0436-07", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" } } ], "dateCreated" : "02-OCT-13", "rescinded" : "0", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationId" : "5", "annotationClassificationName" : "Redaction" }, "categoryId" : "241", "categoryName" : "Inadvertently shipped" } } }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryId" : "241", "annotationClassification" : { "annotationClassificationName" : "Redaction", "annotationClassificationId" : "5" }, "categoryName" : "Inadvertently shipped" } }, "createdBy" : "pihltd", "items" : [ { "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "item" : "TCGA-23-1030-01A-02T-0436-07", "disease" : { "diseaseId" : "2", "abbreviation" : "OV", "description" : "Ovarian serous cystadenocarcinoma" }, "uuid" : "" } ], "id" : "17739", "notes" : [ { "noteText" : "Correct Barcode is TTCGA-23-1030-01A-02T-0438-07", "addedBy" : "pihltd", "noteId" : "17222", "dateAdded" : "02-OCT-13" } ], "rescinded" : "0", "dateCreated" : "02-OCT-13" }, { "createdBy" : "pihltd", "items" : [ { "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "item" : "TCGA-23-1031-01A-01T-0436-07", "disease" : { "diseaseId" : "2", "description" : "Ovarian serous cystadenocarcinoma", "abbreviation" : "OV" }, "uuid" : "" } ], "id" : "17740", "notes" : [ { "noteText" : "Correct Barcode is TTCGA-23-1031-01A-01T-0436-07", "noteId" : "17223", "addedBy" : "pihltd", "dateAdded" : "02-OCT-13" } ], "rescinded" : "0", "dateCreated" : "02-OCT-13", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationName" : "Redaction", "annotationClassificationId" : "5" }, "categoryId" : "241", "categoryName" : "Inadvertently shipped" } } }, { "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationId" : "5", "annotationClassificationName" : "Redaction" }, "categoryId" : "241", "categoryName" : "Inadvertently shipped" } }, "approved" : "1", "dateCreated" : "02-OCT-13", "rescinded" : "0", "createdBy" : "pihltd", "notes" : [ { "noteText" : "Correct Barcode is TTCGA-23-1032-01A-02T-0438-07", "addedBy" : "pihltd", "noteId" : "17224", "dateAdded" : "02-OCT-13" } ], "id" : "17741", "items" : [ { "uuid" : "", "disease" : { "diseaseId" : "2", "abbreviation" : "OV", "description" : "Ovarian serous cystadenocarcinoma" }, "item" : "TCGA-23-1032-01A-02T-0436-07", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" } } ] }, { "createdBy" : "pihltd", "notes" : [ { "noteText" : "Correct Barcode is TTCGA-23-1107-01A-01T-0436-07", "noteId" : "17225", "addedBy" : "pihltd", "dateAdded" : "02-OCT-13" } ], "id" : "17742", "items" : [ { "uuid" : "", "disease" : { "description" : "Ovarian serous cystadenocarcinoma", "abbreviation" : "OV", "diseaseId" : "2" }, "item" : "TCGA-23-1107-01A-01T-0436-07", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" } } ], "dateCreated" : "02-OCT-13", "rescinded" : "0", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationName" : "Redaction", "annotationClassificationId" : "5" }, "categoryId" : "241", "categoryName" : "Inadvertently shipped" } } }, { "id" : "17743", "notes" : [ { "dateAdded" : "02-OCT-13", "noteText" : "Correct Barcode is TTCGA-23-1109-01A-01T-0436-07", "addedBy" : "pihltd", "noteId" : "17226" } ], "items" : [ { "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "item" : "TCGA-23-1109-01A-01T-0436-07", "disease" : { "abbreviation" : "OV", "description" : "Ovarian serous cystadenocarcinoma", "diseaseId" : "2" }, "uuid" : "" } ], "createdBy" : "pihltd", "dateCreated" : "02-OCT-13", "rescinded" : "0", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Inadvertently shipped", "categoryId" : "241", "annotationClassification" : { "annotationClassificationId" : "5", "annotationClassificationName" : "Redaction" } } } }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Inadvertently shipped", "categoryId" : "241", "annotationClassification" : { "annotationClassificationId" : "5", "annotationClassificationName" : "Redaction" } } }, "createdBy" : "pihltd", "notes" : [ { "dateAdded" : "02-OCT-13", "noteId" : "17227", "addedBy" : "pihltd", "noteText" : "Correct Barcode is TTCGA-23-1110-01A-01T-0438-07" } ], "id" : "17744", "items" : [ { "disease" : { "abbreviation" : "OV", "description" : "Ovarian serous cystadenocarcinoma", "diseaseId" : "2" }, "uuid" : "", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "item" : "TCGA-23-1110-01A-01T-0436-07" } ], "dateCreated" : "02-OCT-13", "rescinded" : "0" }, { "rescinded" : "0", "dateCreated" : "02-OCT-13", "createdBy" : "pihltd", "items" : [ { "uuid" : "", "disease" : { "description" : "Ovarian serous cystadenocarcinoma", "abbreviation" : "OV", "diseaseId" : "2" }, "item" : "TCGA-23-1113-01A-01T-0436-07", "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" } } ], "notes" : [ { "noteText" : "Correct Barcode is TTCGA-23-1113-01A-01T-0438-07", "addedBy" : "pihltd", "noteId" : "17228", "dateAdded" : "02-OCT-13" } ], "id" : "17745", "annotationCategory" : { "annotationCategory" : { "categoryId" : "241", "annotationClassification" : { "annotationClassificationName" : "Redaction", "annotationClassificationId" : "5" }, "categoryName" : "Inadvertently shipped" } }, "approved" : "1" }, { "items" : [ { "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "item" : "TCGA-23-1116-01A-01T-0436-07", "disease" : { "diseaseId" : "2", "abbreviation" : "OV", "description" : "Ovarian serous cystadenocarcinoma" }, "uuid" : "" } ], "id" : "17746", "notes" : [ { "dateAdded" : "02-OCT-13", "addedBy" : "pihltd", "noteId" : "17229", "noteText" : "Correct Barcode is TTCGA-23-1116-01A-01T-0438-07" } ], "createdBy" : "pihltd", "rescinded" : "0", "dateCreated" : "02-OCT-13", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Inadvertently shipped", "categoryId" : "241", "annotationClassification" : { "annotationClassificationName" : "Redaction", "annotationClassificationId" : "5" } } } }, { "dateCreated" : "02-OCT-13", "rescinded" : "0", "id" : "17747", "notes" : [ { "dateAdded" : "02-OCT-13", "addedBy" : "pihltd", "noteId" : "17230", "noteText" : "Correct Barcode is TTCGA-23-1117-01A-02T-0438-07" } ], "items" : [ { "disease" : { "diseaseId" : "2", "description" : "Ovarian serous cystadenocarcinoma", "abbreviation" : "OV" }, "uuid" : "", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "item" : "TCGA-23-1117-01A-02T-0436-07" } ], "createdBy" : "pihltd", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Inadvertently shipped", "categoryId" : "241", "annotationClassification" : { "annotationClassificationId" : "5", "annotationClassificationName" : "Redaction" } } }, "approved" : "1" }, { "rescinded" : "0", "dateCreated" : "02-OCT-13", "createdBy" : "pihltd", "items" : [ { "disease" : { "diseaseId" : "2", "abbreviation" : "OV", "description" : "Ovarian serous cystadenocarcinoma" }, "uuid" : "", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "item" : "TCGA-23-1118-01A-01T-0436-07" } ], "notes" : [ { "noteText" : "Correct Barcode is TTCGA-23-1118-01A-01T-0438-07", "noteId" : "17231", "addedBy" : "pihltd", "dateAdded" : "02-OCT-13" } ], "id" : "17748", "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationName" : "Redaction", "annotationClassificationId" : "5" }, "categoryId" : "241", "categoryName" : "Inadvertently shipped" } }, "approved" : "1" }, { "items" : [ { "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "item" : "TCGA-23-1119-01A-02T-0436-07", "disease" : { "description" : "Ovarian serous cystadenocarcinoma", "abbreviation" : "OV", "diseaseId" : "2" }, "uuid" : "" } ], "notes" : [ { "dateAdded" : "02-OCT-13", "noteText" : "Correct Barcode is TTCGA-23-1119-01A-02T-0438-07", "noteId" : "17232", "addedBy" : "pihltd" } ], "id" : "17749", "createdBy" : "pihltd", "rescinded" : "0", "dateCreated" : "02-OCT-13", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Inadvertently shipped", "annotationClassification" : { "annotationClassificationName" : "Redaction", "annotationClassificationId" : "5" }, "categoryId" : "241" } } }, { "notes" : [ { "dateAdded" : "02-OCT-13", "noteId" : "17233", "addedBy" : "pihltd", "noteText" : "Correct Barcode is TTCGA-23-1120-01A-02T-0436-07" } ], "id" : "17750", "items" : [ { "item" : "TCGA-23-1120-01A-02T-0436-07", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "uuid" : "", "disease" : { "diseaseId" : "2", "description" : "Ovarian serous cystadenocarcinoma", "abbreviation" : "OV" } } ], "createdBy" : "pihltd", "dateCreated" : "02-OCT-13", "rescinded" : "0", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationName" : "Redaction", "annotationClassificationId" : "5" }, "categoryId" : "241", "categoryName" : "Inadvertently shipped" } } }, { "dateCreated" : "02-OCT-13", "rescinded" : "0", "createdBy" : "pihltd", "id" : "17751", "notes" : [ { "dateAdded" : "02-OCT-13", "noteText" : "Correct Barcode is TTCGA-23-1121-01A-01T-0436-07", "addedBy" : "pihltd", "noteId" : "17234" } ], "items" : [ { "uuid" : "", "disease" : { "diseaseId" : "2", "description" : "Ovarian serous cystadenocarcinoma", "abbreviation" : "OV" }, "item" : "TCGA-23-1121-01A-01T-0436-07", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" } } ], "annotationCategory" : { "annotationCategory" : { "categoryName" : "Inadvertently shipped", "categoryId" : "241", "annotationClassification" : { "annotationClassificationName" : "Redaction", "annotationClassificationId" : "5" } } }, "approved" : "1" }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Inadvertently shipped", "categoryId" : "241", "annotationClassification" : { "annotationClassificationId" : "5", "annotationClassificationName" : "Redaction" } } }, "notes" : [ { "dateAdded" : "02-OCT-13", "noteId" : "17235", "addedBy" : "pihltd", "noteText" : "Correct Barcode is TTCGA-23-1122-01A-01T-0438-07" } ], "id" : "17752", "items" : [ { "item" : "TCGA-23-1122-01A-01T-0436-07", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "uuid" : "", "disease" : { "diseaseId" : "2", "description" : "Ovarian serous cystadenocarcinoma", "abbreviation" : "OV" } } ], "createdBy" : "pihltd", "dateCreated" : "02-OCT-13", "rescinded" : "0" }, { "dateCreated" : "02-OCT-13", "rescinded" : "0", "id" : "17753", "notes" : [ { "dateAdded" : "02-OCT-13", "noteText" : "Correct Barcode is TTCGA-23-1123-01A-01T-0438-07", "noteId" : "17236", "addedBy" : "pihltd" } ], "items" : [ { "disease" : { "diseaseId" : "2", "description" : "Ovarian serous cystadenocarcinoma", "abbreviation" : "OV" }, "uuid" : "", "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" }, "item" : "TCGA-23-1123-01A-01T-0436-07" } ], "createdBy" : "pihltd", "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationName" : "Redaction", "annotationClassificationId" : "5" }, "categoryId" : "241", "categoryName" : "Inadvertently shipped" } }, "approved" : "1" }, { "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationId" : "5", "annotationClassificationName" : "Redaction" }, "categoryId" : "241", "categoryName" : "Inadvertently shipped" } }, "approved" : "1", 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Correct barcode is TCGA-D9-A1X3-06A-11D-A18Y-02", "noteId" : "18976", "addedBy" : "pihltd" } ], "items" : [ { "uuid" : "", "disease" : { "diseaseId" : "15", "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma" }, "item" : "TCGA-D9-A1X3-01A-11D-A18Y-02", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" } } ], "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryId" : "243", "categoryName" : "Barcode incorrect" } }, "approved" : "1" }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "categoryId" : "243", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" } } }, "id" : "19434", "notes" : [ { "dateAdded" : "31-JAN-14", "noteId" : "18977", "addedBy" : "pihltd", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-D9-A1X3-06A-11D-A191-01" } ], "items" : [ { "disease" : { "description" : "Skin Cutaneous Melanoma", "abbreviation" : "SKCM", "diseaseId" : "15" }, "uuid" : "", "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" }, "item" : "TCGA-D9-A1X3-01A-11D-A191-01" } ], "createdBy" : "pihltd", "dateCreated" : "31-JAN-14", "rescinded" : "0" }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryId" : "243", "categoryName" : "Barcode incorrect" } }, "createdBy" : "pihltd", "id" : "19435", "notes" : [ { "dateAdded" : "31-JAN-14", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-D9-A1X3-06A-11D-A197-08", "addedBy" : "pihltd", "noteId" : "18978" } ], "items" : [ { "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "item" : "TCGA-D9-A1X3-01A-11D-A197-08", "disease" : { "description" : "Skin Cutaneous Melanoma", "abbreviation" : "SKCM", "diseaseId" : "15" }, "uuid" : "" } ], "dateCreated" : "31-JAN-14", "rescinded" : "0" }, { "dateCreated" : "31-JAN-14", "rescinded" : "0", "id" : "19436", "notes" : [ { "dateAdded" : "31-JAN-14", "addedBy" : "pihltd", "noteId" : "18979", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-D9-A1X3-06A-11D-A19C-05" } ], "items" : [ { "uuid" : "", "disease" : { "diseaseId" : "15", "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma" }, "item" : "TCGA-D9-A1X3-01A-11D-A19C-05", "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" } } ], "createdBy" : "pihltd", "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" }, "categoryId" : "243", "categoryName" : "Barcode incorrect" } }, "approved" : "1" }, { "annotationCategory" : { "annotationCategory" : { "categoryId" : "243", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryName" : "Barcode incorrect" } }, "approved" : "1", "dateCreated" : "31-JAN-14", "rescinded" : "0", "id" : "19437", "notes" : [ { "addedBy" : "pihltd", "noteId" : "18980", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-D9-A1X3-06A-11R", "dateAdded" : "31-JAN-14" } ], "items" : [ { "item" : "TCGA-D9-A1X3-01A-11R", "itemType" : { "itemTypeName" : "Analyte", "itemTypeId" : "2" }, "uuid" : "", "disease" : { "description" : "Skin Cutaneous Melanoma", "abbreviation" : "SKCM", "diseaseId" : "15" } } ], "createdBy" : "pihltd" }, { "createdBy" : "pihltd", "notes" : [ { "dateAdded" : "31-JAN-14", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-D9-A1X3-06A-11R-A18S-07", "noteId" : "18981", "addedBy" : "pihltd" } ], "id" : "19438", "items" : [ { "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" }, "item" : "TCGA-D9-A1X3-01A-11R-A18S-07", "disease" : { "diseaseId" : "15", "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma" }, "uuid" : "" } ], "dateCreated" : "31-JAN-14", "rescinded" : "0", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "categoryId" : "243", "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" } } } }, { "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" }, "categoryId" : "243", "categoryName" : "Barcode incorrect" } }, "approved" : "1", "rescinded" : "0", "dateCreated" : "31-JAN-14", "items" : [ { "uuid" : "", "disease" : { "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma", "diseaseId" : "15" }, "item" : "TCGA-D9-A1X3-01A-11R-A18V-13", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" } } ], "id" : "19439", "notes" : [ { "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-D9-A1X3-06A-11R-A18V-13", "addedBy" : "pihltd", "noteId" : "18982", "dateAdded" : "31-JAN-14" } ], "createdBy" : "pihltd" }, { "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryId" : "21", "categoryName" : "Item is noncanonical" } }, "approved" : "1", "dateCreated" : "14-MAR-11", "rescinded" : "0", "id" : "1944", "notes" : [ { "noteId" : "1253", "addedBy" : "DCC", "noteText" : "OV Proteomics MDA", "dateAdded" : "14-MAR-11" } ], "items" : [ { "itemType" : { "itemTypeName" : "Slide", "itemTypeId" : "6" }, "item" : "TCGA-13-0720-01A-21-1561", "disease" : { "description" : "Ovarian serous cystadenocarcinoma", "abbreviation" : "OV", "diseaseId" : "2" }, "uuid" : "" } ], "createdBy" : "DCC" }, { "createdBy" : "pihltd", "id" : "19440", "notes" : [ { "dateAdded" : "31-JAN-14", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-D9-A1X3-06A-11W", "noteId" : "18983", "addedBy" : "pihltd" } ], "items" : [ { "itemType" : { "itemTypeId" : "2", "itemTypeName" : "Analyte" }, "item" : "TCGA-D9-A1X3-01A-11W", "disease" : { "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma", "diseaseId" : "15" }, "uuid" : "" } ], "dateCreated" : "31-JAN-14", "rescinded" : "0", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryId" : "243", "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" }, "categoryName" : "Barcode incorrect" } } }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryId" : "243" } }, "createdBy" : "pihltd", "id" : "19441", "notes" : [ { "dateAdded" : "31-JAN-14", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-D9-A1X3-06A-11W-A20H-08", "noteId" : "18984", "addedBy" : "pihltd" } ], "items" : [ { "item" : "TCGA-D9-A1X3-01A-11W-A20H-08", "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" }, "uuid" : "", "disease" : { "diseaseId" : "15", "description" : "Skin Cutaneous Melanoma", "abbreviation" : "SKCM" } } ], "dateCreated" : "31-JAN-14", "rescinded" : "0" }, { "items" : [ { "disease" : { "description" : "Skin Cutaneous Melanoma", "abbreviation" : "SKCM", "diseaseId" : "15" }, "uuid" : "", "itemType" : { "itemTypeName" : "Slide", "itemTypeId" : "6" }, "item" : "TCGA-D9-A1X3-01A-01-TS1" } ], "notes" : [ { "dateAdded" : "31-JAN-14", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-D9-A1X3-06A-01-TS1", "noteId" : "18985", "addedBy" : "pihltd" } ], "id" : "19442", "createdBy" : "pihltd", "rescinded" : "0", "dateCreated" : "31-JAN-14", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "categoryId" : "243", "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" } } } }, { "dateCreated" : "31-JAN-14", "rescinded" : "0", "notes" : [ { "dateAdded" : "31-JAN-14", "addedBy" : "pihltd", "noteId" : "18986", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-D9-A4Z6-06A" } ], "id" : "19443", "items" : [ { "itemType" : { "itemTypeId" : "5", "itemTypeName" : "Sample" }, "item" : "TCGA-D9-A4Z6-01A", "disease" : { "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma", "diseaseId" : "15" }, "uuid" : "" } ], "createdBy" : "pihltd", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryId" : "243" } }, "approved" : "1" }, { "notes" : [ { "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-D9-A4Z6-06A-12", "addedBy" : "pihltd", "noteId" : "18987", "dateAdded" : "31-JAN-14" } ], "id" : "19444", "items" : [ { "disease" : { "description" : "Skin Cutaneous Melanoma", "abbreviation" : "SKCM", "diseaseId" : "15" }, "uuid" : "", "itemType" : { "itemTypeId" : "4", "itemTypeName" : "Portion" }, "item" : "TCGA-D9-A4Z6-01A-12" } ], "createdBy" : "pihltd", "dateCreated" : "31-JAN-14", "rescinded" : "0", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "categoryId" : "243", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" } } } }, { "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" }, "categoryId" : "243" } }, "approved" : "1", "dateCreated" : "31-JAN-14", "rescinded" : "0", "createdBy" : "pihltd", "notes" : [ { "dateAdded" : "31-JAN-14", "noteId" : "18988", "addedBy" : "pihltd", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-D9-A4Z6-06A-12D" } ], "id" : "19445", "items" : [ { "itemType" : { "itemTypeName" : "Analyte", "itemTypeId" : "2" }, "item" : "TCGA-D9-A4Z6-01A-12D", "disease" : { "description" : "Skin Cutaneous Melanoma", "abbreviation" : "SKCM", "diseaseId" : "15" }, "uuid" : "" } ] }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryId" : "243", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryName" : "Barcode incorrect" } }, "createdBy" : "pihltd", "notes" : [ { "dateAdded" : "31-JAN-14", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-D9-A4Z6-06A-12D-A25O-08", "noteId" : "18989", "addedBy" : "pihltd" } ], "id" : "19446", "items" : [ { "item" : "TCGA-D9-A4Z6-01A-12D-A25O-08", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "uuid" : "", "disease" : { "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma", "diseaseId" : "15" } } ], "dateCreated" : "31-JAN-14", "rescinded" : "0" }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryId" : "243" } }, "items" : [ { "uuid" : "", "disease" : { "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma", "diseaseId" : "15" }, "item" : "TCGA-D9-A4Z6-01A-12D-A25P-01", "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" } } ], "id" : "19447", "notes" : [ { "noteId" : "18990", "addedBy" : "pihltd", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-D9-A4Z6-06A-12D-A25P-01", "dateAdded" : "31-JAN-14" } ], "createdBy" : "pihltd", "rescinded" : "0", "dateCreated" : "31-JAN-14" }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "categoryId" : "243", "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" } } }, "createdBy" : "pihltd", "id" : "19448", "notes" : [ { "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-D9-A4Z6-06A-12D-A25S-05", "addedBy" : "pihltd", "noteId" : "18991", "dateAdded" : "31-JAN-14" } ], "items" : [ { "uuid" : "", "disease" : { "diseaseId" : "15", "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma" }, "item" : "TCGA-D9-A4Z6-01A-12D-A25S-05", "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" } } ], "dateCreated" : "31-JAN-14", "rescinded" : "0" }, { "rescinded" : "0", "dateCreated" : "31-JAN-14", "createdBy" : "pihltd", "items" : [ { "disease" : { "diseaseId" : "15", "description" : "Skin Cutaneous Melanoma", "abbreviation" : "SKCM" }, "uuid" : "", "itemType" : { "itemTypeId" : "2", "itemTypeName" : "Analyte" }, "item" : "TCGA-D9-A4Z6-01A-12R" } ], "notes" : [ { "dateAdded" : "31-JAN-14", "addedBy" : "pihltd", "noteId" : "18992", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-D9-A4Z6-06A-12R" } ], "id" : "19449", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "categoryId" : "243", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" } } }, "approved" : "1" }, { "rescinded" : "0", "dateCreated" : "14-MAR-11", "createdBy" : "DCC", "items" : [ { "disease" : { "diseaseId" : "2", "description" : "Ovarian serous cystadenocarcinoma", "abbreviation" : "OV" }, "uuid" : "", "itemType" : { "itemTypeId" : "6", "itemTypeName" : "Slide" }, "item" : "TCGA-13-0725-01A-21-1561" } ], "id" : "1945", "notes" : [ { "addedBy" : "DCC", "noteId" : "1254", "noteText" : "OV Proteomics MDA", "dateAdded" : "14-MAR-11" } ], "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" }, "categoryId" : "21", "categoryName" : "Item is noncanonical" } }, "approved" : "1" }, { "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryId" : "243", "categoryName" : "Barcode incorrect" } }, "approved" : "1", "dateCreated" : "31-JAN-14", "rescinded" : "0", "id" : "19450", "notes" : [ { "dateAdded" : "31-JAN-14", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-D9-A4Z6-06A-12R-A25Z-13", "noteId" : "18993", "addedBy" : "pihltd" } ], "items" : [ { "uuid" : "", "disease" : { "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma", "diseaseId" : "15" }, "item" : "TCGA-D9-A4Z6-01A-12R-A25Z-13", "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" } } ], "createdBy" : "pihltd" }, { "items" : [ { "disease" : { "diseaseId" : "15", "description" : "Skin Cutaneous Melanoma", "abbreviation" : "SKCM" }, "uuid" : "", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "item" : "TCGA-D9-A4Z6-01A-12R-A266-07" } ], "id" : "19451", "notes" : [ { "addedBy" : "pihltd", "noteId" : "18994", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-D9-A4Z6-06A-12R-A266-07", "dateAdded" : "31-JAN-14" } ], "createdBy" : "pihltd", "rescinded" : "0", "dateCreated" : "31-JAN-14", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryId" : "243", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryName" : "Barcode incorrect" } } }, { "dateCreated" : "31-JAN-14", "rescinded" : "0", "createdBy" : "pihltd", "notes" : [ { "dateAdded" : "31-JAN-14", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-D9-A4Z6-06A-12W", "addedBy" : "pihltd", "noteId" : "18995" } ], "id" : "19452", "items" : [ { "uuid" : "", "disease" : { "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma", "diseaseId" : "15" }, "item" : "TCGA-D9-A4Z6-01A-12W", "itemType" : { "itemTypeId" : "2", "itemTypeName" : "Analyte" } } ], "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryId" : "243" } }, "approved" : "1" }, { "items" : [ { "disease" : { "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma", "diseaseId" : "15" }, "uuid" : "", "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" }, "item" : "TCGA-D9-A4Z6-01A-12W-A293-08" } ], "notes" : [ { "dateAdded" : "31-JAN-14", "noteId" : "18996", "addedBy" : "pihltd", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-D9-A4Z6-06A-12W-A293-08" } ], "id" : "19453", "createdBy" : "pihltd", "rescinded" : "0", "dateCreated" : "31-JAN-14", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" }, "categoryId" : "243" } } }, { "items" : [ { "itemType" : { "itemTypeName" : "Slide", "itemTypeId" : "6" }, "item" : "TCGA-D9-A4Z6-01A-01-TS1", "disease" : { "diseaseId" : "15", "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma" }, "uuid" : "" } ], "notes" : [ { "dateAdded" : "31-JAN-14", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-D9-A4Z6-06A-01-TS1", "noteId" : "18997", "addedBy" : "pihltd" } ], "id" : "19454", "createdBy" : "pihltd", "rescinded" : "0", "dateCreated" : "31-JAN-14", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" }, "categoryId" : "243", "categoryName" : "Barcode incorrect" } } }, { "items" : [ { "disease" : { "description" : "Skin Cutaneous Melanoma", "abbreviation" : "SKCM", "diseaseId" : "15" }, "uuid" : "", "itemType" : { "itemTypeId" : "5", "itemTypeName" : "Sample" }, "item" : "TCGA-HR-A2OG-01A" } ], "id" : "19455", "notes" : [ { "addedBy" : "pihltd", "noteId" : "18998", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OG-06A", "dateAdded" : "31-JAN-14" } ], "createdBy" : "pihltd", "rescinded" : "0", "dateCreated" : "31-JAN-14", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "categoryId" : "243", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" } } } }, { "id" : "19456", "notes" : [ { "dateAdded" : "31-JAN-14", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OG-06A-21", "addedBy" : "pihltd", "noteId" : "18999" } ], "items" : [ { "uuid" : "", "disease" : { "description" : "Skin Cutaneous Melanoma", "abbreviation" : "SKCM", "diseaseId" : "15" }, "item" : "TCGA-HR-A2OG-01A-21", "itemType" : { "itemTypeName" : "Portion", "itemTypeId" : "4" } } ], "createdBy" : "pihltd", "dateCreated" : "31-JAN-14", "rescinded" : "0", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" }, "categoryId" : "243", "categoryName" : "Barcode incorrect" } } }, { "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" }, "categoryId" : "243" } }, "approved" : "1", "dateCreated" : "31-JAN-14", "rescinded" : "0", "id" : "19457", "notes" : [ { "dateAdded" : "31-JAN-14", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OG-06A-21D", "addedBy" : "pihltd", "noteId" : "19000" } ], "items" : [ { "uuid" : "", "disease" : { "diseaseId" : "15", "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma" }, "item" : "TCGA-HR-A2OG-01A-21D", "itemType" : { "itemTypeName" : "Analyte", "itemTypeId" : "2" } } ], "createdBy" : "pihltd" }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" }, "categoryId" : "243" } }, "createdBy" : "pihltd", "items" : [ { "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" }, "item" : "TCGA-HR-A2OG-01A-21D-A18Y-02", "disease" : { "diseaseId" : "15", "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma" }, "uuid" : "" } ], "id" : "19458", "notes" : [ { "addedBy" : "pihltd", "noteId" : "19001", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OG-06A-21D-A18Y-02", "dateAdded" : "31-JAN-14" } ], "rescinded" : "0", "dateCreated" : "31-JAN-14" }, { "createdBy" : "pihltd", "items" : [ { "uuid" : "", "disease" : { "diseaseId" : "15", "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma" }, "item" : "TCGA-HR-A2OG-01A-21D-A191-01", "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" } } ], "notes" : [ { "dateAdded" : "31-JAN-14", "noteId" : "19002", "addedBy" : "pihltd", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OG-06A-21D-A191-01" } ], "id" : "19459", "rescinded" : "0", "dateCreated" : "31-JAN-14", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" }, "categoryId" : "243" } } }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Item is noncanonical", "categoryId" : "21", "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" } } }, "items" : [ { "uuid" : "", "disease" : { "diseaseId" : "2", "description" : "Ovarian serous cystadenocarcinoma", "abbreviation" : "OV" }, "item" : "TCGA-13-0886-01A-21-1561", "itemType" : { "itemTypeId" : "6", "itemTypeName" : "Slide" } } ], "notes" : [ { "noteText" : "OV Proteomics MDA", "noteId" : "1255", "addedBy" : "DCC", "dateAdded" : "14-MAR-11" } ], "id" : "1946", "createdBy" : "DCC", "rescinded" : "0", "dateCreated" : "14-MAR-11" }, { "dateCreated" : "31-JAN-14", "rescinded" : "0", "createdBy" : "pihltd", "notes" : [ { "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OG-06A-21D-A197-08", "addedBy" : "pihltd", "noteId" : "19003", "dateAdded" : "31-JAN-14" } ], "id" : "19460", "items" : [ { "disease" : { "description" : "Skin Cutaneous Melanoma", "abbreviation" : "SKCM", "diseaseId" : "15" }, "uuid" : "", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "item" : "TCGA-HR-A2OG-01A-21D-A197-08" } ], "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "categoryId" : "243", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" } } }, "approved" : "1" }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "categoryId" : "243", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" } } }, "id" : "19461", "notes" : [ { "dateAdded" : "31-JAN-14", "addedBy" : "pihltd", "noteId" : "19004", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OG-06A-21D-A19C-05" } ], "items" : [ { "disease" : { "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma", "diseaseId" : "15" }, "uuid" : "", "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" }, "item" : "TCGA-HR-A2OG-01A-21D-A19C-05" } ], "createdBy" : "pihltd", "dateCreated" : "31-JAN-14", "rescinded" : "0" }, { "dateCreated" : "31-JAN-14", "rescinded" : "0", "createdBy" : "pihltd", "id" : "19462", "notes" : [ { "dateAdded" : "31-JAN-14", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OG-06A-21R", "addedBy" : "pihltd", "noteId" : "19005" } ], "items" : [ { "itemType" : { "itemTypeName" : "Analyte", "itemTypeId" : "2" }, "item" : "TCGA-HR-A2OG-01A-21R", "disease" : { "diseaseId" : "15", "description" : "Skin Cutaneous Melanoma", "abbreviation" : "SKCM" }, "uuid" : "" } ], "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryId" : "243" } }, "approved" : "1" }, { "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "categoryId" : "243", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" } } }, "approved" : "1", "rescinded" : "0", "dateCreated" : "31-JAN-14", "createdBy" : "pihltd", "items" : [ { "uuid" : "", "disease" : { "diseaseId" : "15", "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma" }, "item" : "TCGA-HR-A2OG-01A-21R-A18U-07", "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" } } ], "notes" : [ { "dateAdded" : "31-JAN-14", "addedBy" : "pihltd", "noteId" : "19006", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OG-06A-21R-A18U-07" } ], "id" : "19463" }, { "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryId" : "243" } }, "approved" : "1", "dateCreated" : "31-JAN-14", "rescinded" : "0", "createdBy" : "pihltd", "id" : "19464", "notes" : [ { "dateAdded" : "31-JAN-14", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OG-06A-21R-A18X-13", "addedBy" : "pihltd", "noteId" : "19007" } ], "items" : [ { "disease" : { "diseaseId" : "15", "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma" }, "uuid" : "", "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" }, "item" : "TCGA-HR-A2OG-01A-21R-A18X-13" } ] }, { "dateCreated" : "31-JAN-14", "rescinded" : "0", "createdBy" : "pihltd", "notes" : [ { "dateAdded" : "31-JAN-14", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OG-06A-21W", "noteId" : "19008", "addedBy" : "pihltd" } ], "id" : "19465", "items" : [ { "itemType" : { "itemTypeId" : "2", "itemTypeName" : "Analyte" }, "item" : "TCGA-HR-A2OG-01A-21W", "disease" : { "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma", "diseaseId" : "15" }, "uuid" : "" } ], "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryId" : "243", "categoryName" : "Barcode incorrect" } }, "approved" : "1" }, { "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryId" : "243", "categoryName" : "Barcode incorrect" } }, "approved" : "1", "dateCreated" : "31-JAN-14", "rescinded" : "0", "createdBy" : "pihltd", "id" : "19466", "notes" : [ { "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OG-06A-21W-A20H-08", "noteId" : "19009", "addedBy" : "pihltd", "dateAdded" : "31-JAN-14" } ], "items" : [ { "item" : "TCGA-HR-A2OG-01A-21W-A20H-08", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "uuid" : "", "disease" : { "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma", "diseaseId" : "15" } } ] }, { "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "categoryId" : "243", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" } } }, "approved" : "1", "dateCreated" : "31-JAN-14", "rescinded" : "0", "notes" : [ { "dateAdded" : "31-JAN-14", "noteId" : "19010", "addedBy" : "pihltd", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OG-06A-02-TSB" } ], "id" : "19467", "items" : [ { "item" : "TCGA-HR-A2OG-01A-02-TSB", "itemType" : { "itemTypeName" : "Slide", "itemTypeId" : "6" }, "uuid" : "", "disease" : { "diseaseId" : "15", "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma" } } ], "createdBy" : "pihltd" }, { "dateCreated" : "31-JAN-14", "rescinded" : "0", "createdBy" : "pihltd", "notes" : [ { "dateAdded" : "31-JAN-14", "noteId" : "19011", "addedBy" : "pihltd", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OH-06A" } ], "id" : "19468", "items" : [ { "item" : "TCGA-HR-A2OH-01A", "itemType" : { "itemTypeName" : "Sample", "itemTypeId" : "5" }, "uuid" : "", "disease" : { "diseaseId" : "15", "description" : "Skin Cutaneous Melanoma", "abbreviation" : "SKCM" } } ], "annotationCategory" : { "annotationCategory" : { "categoryId" : "243", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryName" : "Barcode incorrect" } }, "approved" : "1" }, { "id" : "19469", "notes" : [ { "dateAdded" : "31-JAN-14", "noteId" : "19012", "addedBy" : "pihltd", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OH-06A-11" } ], "items" : [ { "itemType" : { "itemTypeName" : "Portion", "itemTypeId" : "4" }, "item" : "TCGA-HR-A2OH-01A-11", "disease" : { "diseaseId" : "15", "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma" }, "uuid" : "" } ], "createdBy" : "pihltd", "dateCreated" : "31-JAN-14", "rescinded" : "0", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "categoryId" : "243", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" } } } }, { "createdBy" : "DCC", "notes" : [ { "noteText" : "OV Proteomics MDA", "addedBy" : "DCC", "noteId" : "1256", "dateAdded" : "14-MAR-11" } ], "id" : "1947", "items" : [ { "item" : "TCGA-13-0887-01A-21-1561", "itemType" : { "itemTypeId" : "6", "itemTypeName" : "Slide" }, "uuid" : "", "disease" : { "abbreviation" : "OV", "description" : "Ovarian serous cystadenocarcinoma", "diseaseId" : "2" } } ], "dateCreated" : "14-MAR-11", "rescinded" : "0", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryId" : "21", "categoryName" : "Item is noncanonical" } } }, { "notes" : [ { "dateAdded" : "31-JAN-14", "addedBy" : "pihltd", "noteId" : "19013", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OH-06A-11D" } ], "id" : "19470", "items" : [ { "disease" : { "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma", "diseaseId" : "15" }, "uuid" : "", "itemType" : { "itemTypeId" : "2", "itemTypeName" : "Analyte" }, "item" : "TCGA-HR-A2OH-01A-11D" } ], "createdBy" : "pihltd", "dateCreated" : "31-JAN-14", "rescinded" : "0", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" }, "categoryId" : "243" } } }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "categoryId" : "243", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" } } }, "createdBy" : "pihltd", "notes" : [ { "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OH-06A-11D-A18Y-02", "addedBy" : "pihltd", "noteId" : "19014", "dateAdded" : "31-JAN-14" } ], "id" : "19471", "items" : [ { "uuid" : "", "disease" : { "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma", "diseaseId" : "15" }, "item" : "TCGA-HR-A2OH-01A-11D-A18Y-02", "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" } } ], "dateCreated" : "31-JAN-14", "rescinded" : "0" }, { "annotationCategory" : { "annotationCategory" : { "categoryId" : "243", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryName" : "Barcode incorrect" } }, "approved" : "1", "dateCreated" : "31-JAN-14", "rescinded" : "0", "createdBy" : "pihltd", "notes" : [ { "dateAdded" : "31-JAN-14", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OH-06A-11D-A191-01", "noteId" : "19015", "addedBy" : "pihltd" } ], "id" : "19472", "items" : [ { "item" : "TCGA-HR-A2OH-01A-11D-A191-01", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "uuid" : "", "disease" : { "diseaseId" : "15", "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma" } } ] }, { "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" }, "categoryId" : "243" } }, "approved" : "1", "dateCreated" : "31-JAN-14", "rescinded" : "0", "createdBy" : "pihltd", "notes" : [ { "dateAdded" : "31-JAN-14", "addedBy" : "pihltd", "noteId" : "19016", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OH-06A-11D-A197-08" } ], "id" : "19473", "items" : [ { "disease" : { "diseaseId" : "15", "description" : "Skin Cutaneous Melanoma", "abbreviation" : "SKCM" }, "uuid" : "", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "item" : "TCGA-HR-A2OH-01A-11D-A197-08" } ] }, { "createdBy" : "pihltd", "items" : [ { "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "item" : "TCGA-HR-A2OH-01A-11D-A19C-05", "disease" : { "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma", "diseaseId" : "15" }, "uuid" : "" } ], "notes" : [ { "dateAdded" : "31-JAN-14", "noteId" : "19017", "addedBy" : "pihltd", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OH-06A-11D-A19C-05" } ], "id" : "19474", "rescinded" : "0", "dateCreated" : "31-JAN-14", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryId" : "243", "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" }, "categoryName" : "Barcode incorrect" } } }, { "items" : [ { "disease" : { "diseaseId" : "15", "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma" }, "uuid" : "", "itemType" : { "itemTypeId" : "2", "itemTypeName" : "Analyte" }, "item" : "TCGA-HR-A2OH-01A-11R" } ], "id" : "19475", "notes" : [ { "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OH-06A-11R", "addedBy" : "pihltd", "noteId" : "19018", "dateAdded" : "31-JAN-14" } ], "createdBy" : "pihltd", "rescinded" : "0", "dateCreated" : "31-JAN-14", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "categoryId" : "243", "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" } } } }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryId" : "243" } }, "createdBy" : "pihltd", "notes" : [ { "dateAdded" : "31-JAN-14", "noteId" : "19019", "addedBy" : "pihltd", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OH-06A-11R-A18U-07" } ], "id" : "19476", "items" : [ { "uuid" : "", "disease" : { "diseaseId" : "15", "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma" }, "item" : "TCGA-HR-A2OH-01A-11R-A18U-07", "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" } } ], "dateCreated" : "31-JAN-14", "rescinded" : "0" }, { "dateCreated" : "31-JAN-14", "rescinded" : "0", "notes" : [ { "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OH-06A-11R-A18X-13", "addedBy" : "pihltd", "noteId" : "19020", "dateAdded" : "31-JAN-14" } ], "id" : "19477", "items" : [ { "item" : "TCGA-HR-A2OH-01A-11R-A18X-13", "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" }, "uuid" : "", "disease" : { "diseaseId" : "15", "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma" } } ], "createdBy" : "pihltd", "annotationCategory" : { "annotationCategory" : { "categoryId" : "243", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryName" : "Barcode incorrect" } }, "approved" : "1" }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" }, "categoryId" : "243" } }, "createdBy" : "pihltd", "id" : "19478", "notes" : [ { "dateAdded" : "31-JAN-14", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OH-06A-11W", "addedBy" : "pihltd", "noteId" : "19021" } ], "items" : [ { "disease" : { "description" : "Skin Cutaneous Melanoma", "abbreviation" : "SKCM", "diseaseId" : "15" }, "uuid" : "", "itemType" : { "itemTypeId" : "2", "itemTypeName" : "Analyte" }, "item" : "TCGA-HR-A2OH-01A-11W" } ], "dateCreated" : "31-JAN-14", "rescinded" : "0" }, { "createdBy" : "pihltd", "id" : "19479", "notes" : [ { "addedBy" : "pihltd", "noteId" : "19022", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OH-06A-11W-A20H-08", "dateAdded" : "31-JAN-14" } ], "items" : [ { "item" : "TCGA-HR-A2OH-01A-11W-A20H-08", "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" }, "uuid" : "", "disease" : { "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma", "diseaseId" : "15" } } ], "dateCreated" : "31-JAN-14", "rescinded" : "0", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryId" : "243", "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" }, "categoryName" : "Barcode incorrect" } } }, { "annotationCategory" : { "annotationCategory" : { "categoryName" : "Item is noncanonical", "categoryId" : "21", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" } } }, "approved" : "1", "rescinded" : "0", "dateCreated" : "14-MAR-11", "items" : [ { "itemType" : { "itemTypeName" : "Slide", "itemTypeId" : "6" }, "item" : "TCGA-13-0888-01A-21-1561", "disease" : { "description" : "Ovarian serous cystadenocarcinoma", "abbreviation" : "OV", "diseaseId" : "2" }, "uuid" : "" } ], "id" : "1948", "notes" : [ { "dateAdded" : "14-MAR-11", "noteId" : "1257", "addedBy" : "DCC", "noteText" : "OV Proteomics MDA" } ], "createdBy" : "DCC" }, { "createdBy" : "pihltd", "items" : [ { "itemType" : { "itemTypeName" : "Slide", "itemTypeId" : "6" }, "item" : "TCGA-HR-A2OH-01A-01-TSA", "disease" : { "diseaseId" : "15", "description" : "Skin Cutaneous Melanoma", "abbreviation" : "SKCM" }, "uuid" : "" } ], "id" : "19480", "notes" : [ { "addedBy" : "pihltd", "noteId" : "19023", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OH-06A-01-TSA", "dateAdded" : "31-JAN-14" } ], "rescinded" : "0", "dateCreated" : "31-JAN-14", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryId" : "243", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryName" : "Barcode incorrect" } } }, { "annotationCategory" : { "annotationCategory" : { "categoryId" : "243", "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" }, "categoryName" : "Barcode incorrect" } }, "approved" : "1", "rescinded" : "0", "dateCreated" : "31-JAN-14", "createdBy" : "pihltd", "items" : [ { "itemType" : { "itemTypeName" : "Shipped Portion", "itemTypeId" : "7" }, "item" : "TCGA-HR-A2OG-01A-11-A20N-20", "disease" : { "description" : "Skin Cutaneous Melanoma", "abbreviation" : "SKCM", "diseaseId" : "15" }, "uuid" : "" } ], "id" : "19481", "notes" : [ { "noteId" : "19024", "addedBy" : "pihltd", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OG-06A-11-A20N-20", "dateAdded" : "31-JAN-14" } ] }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryId" : "243", "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" }, "categoryName" : "Barcode incorrect" } }, "items" : [ { "uuid" : "", "disease" : { "diseaseId" : "15", "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma" }, "item" : "TCGA-D9-A1X3-01A-21-A20M-20", "itemType" : { "itemTypeId" : "7", "itemTypeName" : "Shipped Portion" } } ], "notes" : [ { "noteId" : "19025", "addedBy" : "pihltd", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-D9-A1X3-06A-21-A20M-20", "dateAdded" : "31-JAN-14" } ], "id" : "19482", "createdBy" : "pihltd", "rescinded" : "0", "dateCreated" : "31-JAN-14" }, { "dateCreated" : "31-JAN-14", "rescinded" : "0", "id" : "19483", "notes" : [ { "dateAdded" : "31-JAN-14", "noteId" : "19026", "addedBy" : "pihltd", "noteText" : "Originally identified as primary solid tumor, reclassified as metastatic. Data associated with this barcode will be transitioned to the correct barcode. Correct barcode is TCGA-HR-A2OH-06A-21-A20N-20" } ], "items" : [ { "item" : "TCGA-HR-A2OH-01A-21-A20N-20", "itemType" : { "itemTypeId" : "7", "itemTypeName" : "Shipped Portion" }, "uuid" : "", "disease" : { "diseaseId" : "15", "abbreviation" : "SKCM", "description" : "Skin Cutaneous Melanoma" } } ], "createdBy" : "pihltd", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Barcode incorrect", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryId" : "243" } }, "approved" : "1" }, { "dateCreated" : "14-MAR-11", "rescinded" : "0", "id" : "1949", "notes" : [ { "addedBy" : "DCC", "noteId" : "1258", "noteText" : "OV Proteomics MDA", "dateAdded" : "14-MAR-11" } ], "items" : [ { "itemType" : { "itemTypeName" : "Slide", "itemTypeId" : "6" }, "item" : "TCGA-13-0891-01A-21-1561", "disease" : { "diseaseId" : "2", "abbreviation" : "OV", "description" : "Ovarian serous cystadenocarcinoma" }, "uuid" : "" } ], 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"Item flagged DNU" } }, "approved" : "1", "dateCreated" : "11-SEP-11", "rescinded" : "1", "createdBy" : "DCC", "id" : "3303", "notes" : [ { "noteId" : "2618", "addedBy" : "DCC", "noteText" : "SDRF in broad.mit.edu_PAAD.Genome_Wide_SNP_6.mage-tab.1.1002.0 flagged aliquot to be excluded for analysis based on file 'SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A06_801998.ismpolish.data.txt'.", "dateAdded" : "11-SEP-11" }, { "noteId" : "15451", "addedBy" : "jensenma", "noteText" : "This annotation was rescinded by jensenma on 4/23/13 5:15 PM", "dateAdded" : "23-APR-13" } ], "items" : [ { "disease" : { "diseaseId" : "27", "description" : "Pancreatic adenocarcinoma", "abbreviation" : "PAAD" }, "uuid" : "6441d865-fc73-4f52-9802-45acd320b78b", "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" }, "item" : "TCGA-FQ-6555-11A-02D-1794-01" } ] }, { "rescinded" : "0", "dateCreated" : "12-SEP-11", "items" : [ { "itemType" : { "itemTypeId" : "3", "itemTypeName" : "Case" }, "item" : "TCGA-14-0784", "disease" : { "diseaseId" : "1", "abbreviation" : "GBM", "description" : "Glioblastoma multiforme" }, "uuid" : "fc52a226-9306-45d4-b608-4bdda831ad01" } ], "id" : "3383", "notes" : [ { "noteText" : "[intgen.org]: Genotype mismatch", "addedBy" : "pyena", "noteId" : "2698", "dateAdded" : "12-SEP-11" } ], "createdBy" : "pyena", "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationId" : "5", "annotationClassificationName" : "Redaction" }, "categoryId" : "3", "categoryName" : "Genotype mismatch" } }, "approved" : "1" }, { "dateCreated" : "27-OCT-11", "rescinded" : "0", "createdBy" : "pyena", "id" : "3424", "notes" : [ { "noteText" : "Note: Scheduled for shipment in B38 but was withdrawn due to SSTR mismatch. Case was uploaded, withdrawal was initiated after upload. Worked with DCC to remove data", "noteId" : "2739", "addedBy" : "pyena", "dateAdded" : "27-OCT-11" } ], "items" : [ { "disease" : { "abbreviation" : "GBM", "description" : "Glioblastoma multiforme", "diseaseId" : "1" }, "uuid" : "", "itemType" : { "itemTypeName" : "Case", "itemTypeId" : "3" }, "item" : "TCGA-14-1036" } ], "annotationCategory" : { "annotationCategory" : { "categoryId" : "3", "annotationClassification" : { "annotationClassificationName" : "Redaction", "annotationClassificationId" : "5" }, "categoryName" : "Genotype mismatch" } }, "approved" : "1" }, { "createdBy" : "pyena", "items" : [ { "item" : "TCGA-06-0748", "itemType" : { "itemTypeName" : "Case", "itemTypeId" : "3" }, "uuid" : "", "disease" : { "diseaseId" : "1", "abbreviation" : "GBM", "description" : "Glioblastoma multiforme" } } ], "notes" : [ { "noteText" : "Note: Scheduled for shipment in B8 but was withdrawn due to SSTR mismatch. Case was uploaded, withdrawal was initiated after upload. Worked with DCC to remove data.", "addedBy" : "pyena", "noteId" : "2740", "dateAdded" : "27-OCT-11" } ], "id" : "3425", "rescinded" : "0", "dateCreated" : "27-OCT-11", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Genotype mismatch", "annotationClassification" : { "annotationClassificationName" : "Redaction", "annotationClassificationId" : "5" }, "categoryId" : "3" } } }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationId" : "5", "annotationClassificationName" : "Redaction" }, "categoryId" : "3", "categoryName" : "Genotype mismatch" } }, "items" : [ { "disease" : { "description" : "Glioblastoma multiforme", "abbreviation" : "GBM", "diseaseId" : "1" }, "uuid" : "", "itemType" : { "itemTypeName" : "Case", "itemTypeId" : "3" }, "item" : "TCGA-02-2488" } ], "notes" : [ { "noteText" : "Note: Scheduled for shipment in B38 but was withdrawn due to SSTR mismatch. Case was uploaded, withdrawal was initiated after upload. Worked with DCC to remove data.", "addedBy" : "pyena", "noteId" : "2741", "dateAdded" : "27-OCT-11" } ], "id" : "3426", "createdBy" : "pyena", "rescinded" : "0", "dateCreated" : "27-OCT-11" }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Genotype mismatch", "annotationClassification" : { "annotationClassificationName" : "Redaction", "annotationClassificationId" : "5" }, "categoryId" : "3" } }, "items" : [ { "disease" : { "diseaseId" : "1", "description" : "Glioblastoma multiforme", "abbreviation" : "GBM" }, "uuid" : "", "itemType" : { "itemTypeId" : "3", "itemTypeName" : "Case" }, "item" : "TCGA-14-1824" } ], "id" : "3427", "notes" : [ { "noteText" : "Note: Scheduled for shipment in B38 but was withdrawn due to SSTR mismatch. Case was uploaded, withdrawal was initiated after upload. Worked with DCC to remove data.", "noteId" : "2742", "addedBy" : "pyena", "dateAdded" : "27-OCT-11" } ], "createdBy" : "pyena", "rescinded" : "0", "dateCreated" : "27-OCT-11" }, { "annotationCategory" : { "annotationCategory" : { "categoryName" : "Molecular analysis outside specification", "annotationClassification" : { "annotationClassificationId" : "3", "annotationClassificationName" : "Notification" }, "categoryId" : "10" } }, "approved" : "1", "rescinded" : "0", "dateCreated" : "27-OCT-11", "items" : [ { "uuid" : "", "disease" : { "abbreviation" : "GBM", "description" : "Glioblastoma multiforme", "diseaseId" : "1" }, "item" : "TCGA-14-0733-10A-01G", "itemType" : { "itemTypeId" : "2", "itemTypeName" : "Analyte" } } ], "id" : "3428", "notes" : [ { "noteText" : "Shipped to Rubicon, but failed metrics (low yield). Case was uploaded, withdrawal was initiated after upload. Worked with DCC to remove data.", "addedBy" : "pyena", "noteId" : "2743", "dateAdded" : "27-OCT-11" } ], "createdBy" : "pyena" }, { "annotationCategory" : { "annotationCategory" : { "categoryName" : "Item flagged DNU", "annotationClassification" : { "annotationClassificationId" : "2", "annotationClassificationName" : "CenterNotification" }, "categoryId" : "29" } }, "approved" : "1", "dateCreated" : "16-NOV-11", "rescinded" : "1", "id" : "3564", "notes" : [ { "dateAdded" : "16-NOV-11", "noteText" : "SDRF in broad.mit.edu_GBM.Genome_Wide_SNP_6.mage-tab.1.1007.0 flagged aliquot to be excluded for analysis based on file 'SEXES_p_TCGA_b111_SNP_N_GenomeWideSNP_6_G01_780416.ismpolish.data.txt'.", "addedBy" : "DCC", "noteId" : "2879" } ], "items" : [ { "disease" : { "abbreviation" : "GBM", "description" : "Glioblastoma multiforme", "diseaseId" : "1" }, "uuid" : "", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "item" : "TCGA-19-5951-11A-01D-1694-01" } ], "createdBy" : "DCC" }, { "items" : [ { "item" : "TCGA-DU-7300-10A-01W", "itemType" : { "itemTypeName" : "Analyte", "itemTypeId" : "2" }, "uuid" : "", "disease" : { "diseaseId" : "21", "description" : "Brain Lower Grade Glioma", "abbreviation" : "LGG" } } ], "id" : "5010", "notes" : [ { "dateAdded" : "10-MAR-12", "addedBy" : "pyena", "noteId" : "4341", "noteText" : "Sample 7300-10A is considered unacceptable because it had a higher proportion of homozygous calls then expected despite it being the 2nd WGA amplification during SNP analysis. The native DNA of the tumor and normal have been shipped and uploaded to all of the centers in Batch 189 and will be included in the canonical study. The WGA analyte is used as a control for the canonical study, but since the WGA analyte has disqualified through SNP analysis, the WGA analytes for case 7300 will not be shipped or uploaded." } ], "createdBy" : "pyena", "rescinded" : "0", "dateCreated" : "10-MAR-12", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryId" : "181", "annotationClassification" : { "annotationClassificationName" : "Notification", "annotationClassificationId" : "3" }, "categoryName" : "WGA Failure" } } }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Item flagged DNU", "categoryId" : "29", "annotationClassification" : { "annotationClassificationName" : "CenterNotification", "annotationClassificationId" : "2" } } }, "items" : [ { "disease" : { "diseaseId" : "27", "description" : "Pancreatic adenocarcinoma", "abbreviation" : "PAAD" }, "uuid" : "5ec05d6b-fe1b-47f7-a5f3-26320058e6d4", "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" }, "item" : "TCGA-FQ-6554-11A-01D-1794-01" } ], "notes" : [ { "dateAdded" : "16-APR-12", "noteText" : "SDRF in broad.mit.edu_PAAD.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A05_801994.birdseed.data.txt'.", "addedBy" : "DCC", "noteId" : "4837" }, { "noteText" : "This annotation was rescinded by jensenma on 4/23/13 5:14 PM", "addedBy" : "jensenma", "noteId" : "15448", "dateAdded" : "23-APR-13" }, { "dateAdded" : "23-APR-13", "noteText" : "rescinding MAJ", "noteId" : "15447", "addedBy" : "jensenma" } ], "id" : "5506", "createdBy" : "DCC", "rescinded" : "1", "dateCreated" : "16-APR-12" }, { "annotationCategory" : { "annotationCategory" : { "categoryName" : "Item flagged DNU", "annotationClassification" : { "annotationClassificationName" : "CenterNotification", "annotationClassificationId" : "2" }, "categoryId" : "29" } }, "approved" : "1", "dateCreated" : "16-APR-12", "rescinded" : "1", "id" : "5507", "notes" : [ { "noteId" : "4838", "addedBy" : "DCC", "noteText" : "SDRF in broad.mit.edu_PAAD.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A06_801998.birdseed.data.txt'.", "dateAdded" : "16-APR-12" } ], "items" : [ { "item" : "TCGA-FQ-6555-11A-02D-1794-01", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "uuid" : "6441d865-fc73-4f52-9802-45acd320b78b", "disease" : { "abbreviation" : "PAAD", "description" : "Pancreatic adenocarcinoma", "diseaseId" : "27" } } ], "createdBy" : "DCC" }, { "createdBy" : "DCC", "items" : [ { "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "item" : "TCGA-19-5951-11A-01D-1694-01", "disease" : { "abbreviation" : "GBM", "description" : "Glioblastoma multiforme", "diseaseId" : "1" }, "uuid" : "" } ], "id" : "5957", "notes" : [ { "dateAdded" : "28-APR-12", "noteText" : "SDRF in broad.mit.edu_GBM.Genome_Wide_SNP_6.mage-tab.1.2001.0 flagged aliquot to be excluded for analysis based on file 'SEXES_p_TCGA_b111_SNP_N_GenomeWideSNP_6_G01_780416.birdseed.data.txt'.", "addedBy" : "DCC", "noteId" : "5293" } ], "rescinded" : "1", "dateCreated" : "28-APR-12", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Item flagged DNU", "categoryId" : "29", "annotationClassification" : { "annotationClassificationId" : "2", "annotationClassificationName" : "CenterNotification" } } } }, { "notes" : [ { "dateAdded" : "30-JUL-10", "noteId" : "130", "addedBy" : "DCC", "noteText" : "[schaefc]: Dx slide resembles normal tissue" } ], "id" : "695", "items" : [ { "uuid" : "", "disease" : { "diseaseId" : "1", "abbreviation" : "GBM", "description" : "Glioblastoma multiforme" }, "item" : "TCGA-06-0240-01A-01", "itemType" : { "itemTypeName" : "Portion", "itemTypeId" : "4" } } ], "createdBy" : "DCC", "dateCreated" : "30-JUL-10", "rescinded" : "0", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Tumor class but appears normal", "annotationClassification" : { "annotationClassificationName" : "Observation", "annotationClassificationId" : "1" }, "categoryId" : "23" } } }, { "rescinded" : "0", "dateCreated" : "30-JUL-10", "createdBy" : "DCC", "items" : [ { "uuid" : "", "disease" : { "diseaseId" : "1", "description" : "Glioblastoma multiforme", "abbreviation" : "GBM" }, "item" : "TCGA-08-0386-11", "itemType" : { "itemTypeId" : "5", "itemTypeName" : "Sample" } } ], "id" : "698", "notes" : [ { "addedBy" : "DCC", "noteId" : "133", "noteText" : "[schaefc]: Genomic data resembles tumor data", "dateAdded" : "30-JUL-10" } ], "annotationCategory" : { "annotationCategory" : { "categoryName" : "Normal class but appears diseased", "categoryId" : "24", "annotationClassification" : { "annotationClassificationId" : "1", "annotationClassificationName" : "Observation" } } }, "approved" : "1" }, { "createdBy" : "DCC", "notes" : [ { "noteText" : "[intgen.org]: Genotype mismatch", "addedBy" : "DCC", "noteId" : "134", "dateAdded" : "15-SEP-10" } ], "id" : "699", "items" : [ { "disease" : { "diseaseId" : "1", "abbreviation" : "GBM", "description" : "Glioblastoma multiforme" }, "uuid" : "", "itemType" : { "itemTypeId" : "3", "itemTypeName" : "Case" }, "item" : "TCGA-02-0002" } ], "dateCreated" : "15-SEP-10", "rescinded" : "0", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationId" : "5", "annotationClassificationName" : "Redaction" }, "categoryId" : "3", "categoryName" : "Genotype mismatch" } } }, { "dateCreated" : "15-SEP-10", "rescinded" : "0", "id" : "700", "notes" : [ { "noteId" : "135", "addedBy" : "DCC", "noteText" : "[intgen.org]: Genotype mismatch", "dateAdded" : "15-SEP-10" } ], "items" : [ { "disease" : { "diseaseId" : "1", "abbreviation" : "GBM", "description" : "Glioblastoma multiforme" }, "uuid" : "", "itemType" : { "itemTypeName" : "Case", "itemTypeId" : "3" }, "item" : "TCGA-02-0117" } ], "createdBy" : "DCC", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Genotype mismatch", "categoryId" : "3", "annotationClassification" : { "annotationClassificationName" : "Redaction", "annotationClassificationId" : "5" } } }, "approved" : "1" }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryId" : "1", "annotationClassification" : { "annotationClassificationId" : "5", "annotationClassificationName" : "Redaction" }, "categoryName" : "Tumor tissue origin incorrect" } }, "createdBy" : "DCC", "id" : "711", "notes" : [ { "dateAdded" : "02-SEP-10", "addedBy" : "DCC", "noteId" : "146", "noteText" : "[intgen.org]: Case was of non-ovarian origin" } ], "items" : [ { "itemType" : { "itemTypeId" : "3", "itemTypeName" : "Case" }, "item" : "TCGA-01-0629", "disease" : { "abbreviation" : "GBM", "description" : "Glioblastoma multiforme", "diseaseId" : "1" }, "uuid" : "" } ], "dateCreated" : "02-SEP-10", "rescinded" : "0" }, { "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationId" : "5", "annotationClassificationName" : "Redaction" }, "categoryId" : "1", "categoryName" : "Tumor tissue origin incorrect" } }, "approved" : "1", "rescinded" : "0", "dateCreated" : "02-SEP-10", "createdBy" : "DCC", "items" : [ { "itemType" : { "itemTypeId" : "3", "itemTypeName" : "Case" }, "item" : "TCGA-01-0638", "disease" : { "diseaseId" : "2", "description" : "Ovarian serous cystadenocarcinoma", "abbreviation" : "OV" }, "uuid" : "" } ], "id" : "712", "notes" : [ { "noteText" : "[intgen.org]: Case was of non-ovarian origin", "addedBy" : "DCC", "noteId" : "147", "dateAdded" : "02-SEP-10" } ] }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryId" : "1", "annotationClassification" : { "annotationClassificationId" : "5", "annotationClassificationName" : "Redaction" }, "categoryName" : "Tumor tissue origin incorrect" } }, "createdBy" : "DCC", "notes" : [ { "dateAdded" : "02-SEP-10", "noteText" : "[intgen.org]: Case was of non-ovarian origin", "addedBy" : "DCC", "noteId" : "148" } ], "id" : "713", "items" : [ { "uuid" : "", "disease" : { "description" : "Ovarian serous cystadenocarcinoma", "abbreviation" : "OV", "diseaseId" : "2" }, "item" : "TCGA-13-1479", "itemType" : { "itemTypeName" : "Case", "itemTypeId" : "3" } } ], "dateCreated" : "02-SEP-10", "rescinded" : "0" }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryName" : "Center QC failed", "categoryId" : "28", "annotationClassification" : { "annotationClassificationId" : "2", "annotationClassificationName" : "CenterNotification" } } }, "items" : [ { "item" : "TCGA-06-0195-10A-01D-0235-02", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "uuid" : "", "disease" : { "diseaseId" : "1", "description" : "Glioblastoma multiforme", "abbreviation" : "GBM" } } ], "id" : "738", "notes" : [ { "noteText" : "[hms.harvard.edu]: Sample failed, no data", "noteId" : "173", "addedBy" : "DCC", "dateAdded" : "13-MAR-09" } ], "createdBy" : "DCC", "rescinded" : "0", "dateCreated" : "13-MAR-09" }, { "items" : [ { "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "item" : "TCGA-06-0173-10B-01D-0235-02", "disease" : { "diseaseId" : "1", "description" : "Glioblastoma multiforme", "abbreviation" : "GBM" }, "uuid" : "" } ], "id" : "745", "notes" : [ { "addedBy" : "DCC", "noteId" : "180", "noteText" : "[hms.harvard.edu]: failed DNA QC, not enough DNA. So these were not processed. We performed in-house G WGA and submitted data. But as the protocol was not established for in-house amp, the sample data was withdrawn. Please remove L1 and L2 data for this sample too", "dateAdded" : "13-MAR-09" } ], "createdBy" : "DCC", "rescinded" : "0", "dateCreated" : "13-MAR-09", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "categoryId" : "28", "annotationClassification" : { "annotationClassificationName" : "CenterNotification", "annotationClassificationId" : "2" }, "categoryName" : "Center QC failed" } } }, { "rescinded" : "0", "dateCreated" : "13-MAR-09", "createdBy" : "DCC", "items" : [ { "item" : "TCGA-06-0237-01A-02D-0234-02", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "uuid" : "", "disease" : { "diseaseId" : "1", "abbreviation" : "GBM", "description" : "Glioblastoma multiforme" } } ], "id" : "746", "notes" : [ { "dateAdded" : "13-MAR-09", "addedBy" : "DCC", "noteId" : "181", "noteText" : "[hms.harvard.edu]: failed DNA QC, not enough DNA. So these were not processed. We performed in-house G WGA and submitted data. But as the protocol was not established for in-house amp, the sample data was withdrawn. Please remove L1 and L2 data for this sample too" } ], "annotationCategory" : { "annotationCategory" : { "categoryName" : "Center QC failed", "annotationClassification" : { "annotationClassificationId" : "2", "annotationClassificationName" : "CenterNotification" }, "categoryId" : "28" } }, "approved" : "1" }, { "rescinded" : "0", "dateCreated" : "13-MAR-09", "createdBy" : "DCC", "items" : [ { "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" }, "item" : "TCGA-06-0237-10A-01D-0235-02", "disease" : { "diseaseId" : "1", "description" : "Glioblastoma multiforme", "abbreviation" : "GBM" }, "uuid" : "" } ], "id" : "747", "notes" : [ { "noteText" : "[hms.harvard.edu]: failed DNA QC, not enough DNA. So these were not processed. We performed in-house G WGA and submitted data. But as the protocol was not established for in-house amp, the sample data was withdrawn. Please remove L1 and L2 data for this sample too", "addedBy" : "DCC", "noteId" : "182", "dateAdded" : "13-MAR-09" } ], "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationName" : "CenterNotification", "annotationClassificationId" : "2" }, "categoryId" : "28", "categoryName" : "Center QC failed" } }, "approved" : "1" }, { "annotationCategory" : { "annotationCategory" : { "categoryName" : "Duplicate case", "categoryId" : "27", "annotationClassification" : { "annotationClassificationName" : "Redaction", "annotationClassificationId" : "5" } } }, "approved" : "1", "dateCreated" : "28-OCT-10", "rescinded" : "0", "createdBy" : "DCC", "notes" : [ { "dateAdded" : "28-OCT-10", "noteText" : "Duplicate Subject (with TCGA-04-1364)", "noteId" : "209", "addedBy" : "DCC" } ], "id" : "824", "items" : [ { "uuid" : "0c3ba4c0-d7a4-421a-af38-d5019ca45e06", "disease" : { "description" : "Ovarian serous cystadenocarcinoma", "abbreviation" : "OV", "diseaseId" : "2" }, "item" : "TCGA-24-0981", "itemType" : { "itemTypeName" : "Case", "itemTypeId" : "3" } } ] }, { "annotationCategory" : { "annotationCategory" : { "categoryId" : "3", "annotationClassification" : { "annotationClassificationName" : "Redaction", "annotationClassificationId" : "5" }, "categoryName" : "Genotype mismatch" } }, "approved" : "1", "rescinded" : "0", "dateCreated" : "22-NOV-10", "items" : [ { "item" : "TCGA-08-0384", "itemType" : { "itemTypeName" : "Case", "itemTypeId" : "3" }, "uuid" : "", "disease" : { "diseaseId" : "1", "description" : "Glioblastoma multiforme", "abbreviation" : "GBM" } } ], "notes" : [ { "dateAdded" : "22-NOV-10", "noteText" : "IGC new redactions as of 11/10/2010", "noteId" : "228", "addedBy" : "jensenma" } ], "id" : "901", "createdBy" : "jensenma" }, { "createdBy" : "DCC", "notes" : [ { "dateAdded" : "03-DEC-10", "noteId" : "280", "addedBy" : "DCC", "noteText" : "SDRF in broad.mit.edu_GBM.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'STAIR_p_TCGA_Batch7_Affx_N_GenomeWideSNP_6_G02_238500.seg.data.txt'." } ], "id" : "953", "items" : [ { "uuid" : "", "disease" : { "diseaseId" : "1", "abbreviation" : "GBM", "description" : "Glioblastoma multiforme" }, "item" : "TCGA-07-0227-20A-01D-0310-01", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" } } ], "dateCreated" : "03-DEC-10", "rescinded" : "1", "approved" : "1", "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationName" : "CenterNotification", "annotationClassificationId" : "2" }, "categoryId" : "29", "categoryName" : "Item flagged DNU" } } }, { "dateCreated" : "03-DEC-10", "rescinded" : "1", "createdBy" : "DCC", "id" : "973", "notes" : [ { "dateAdded" : "03-DEC-10", "addedBy" : "DCC", "noteId" : "300", "noteText" : "SDRF in broad.mit.edu_GBM.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'TRIGS_p_TCGAaffxB5_sty_GenomeWideSNP_6_A01_223086.ismpolish.data.txt'." } ], "items" : [ { "uuid" : "", "disease" : { "description" : "Glioblastoma multiforme", "abbreviation" : "GBM", "diseaseId" : "1" }, "item" : "TCGA-07-0227-20A-01D-0275-01", "itemType" : { "itemTypeName" : "Aliquot", "itemTypeId" : "1" } } ], "annotationCategory" : { "annotationCategory" : { "categoryName" : "Item flagged DNU", "annotationClassification" : { "annotationClassificationId" : "2", "annotationClassificationName" : "CenterNotification" }, "categoryId" : "29" } }, "approved" : "1" }, { "approved" : "1", "annotationCategory" : { "annotationCategory" : { "annotationClassification" : { "annotationClassificationId" : "2", "annotationClassificationName" : "CenterNotification" }, "categoryId" : "29", "categoryName" : "Item flagged DNU" } }, "createdBy" : "DCC", "id" : "986", "notes" : [ { "dateAdded" : "03-DEC-10", "noteText" : "SDRF in broad.mit.edu_GBM.Genome_Wide_SNP_6.mage-tab.1.1004.0 flagged aliquot to be excluded for analysis based on file 'FALLS_p_TCGAaffxB4_1_GenomeWideSNP_6_A04_190524.after_5NN.copynumber.data.txt'.", "noteId" : "313", "addedBy" : "DCC" } ], "items" : [ { "itemType" : { "itemTypeId" : "1", "itemTypeName" : "Aliquot" }, "item" : "TCGA-07-0227-20A-01D-0236-01", "disease" : { "description" : "Glioblastoma multiforme", "abbreviation" : "GBM", "diseaseId" : "1" }, "uuid" : "" } ], "dateCreated" : "03-DEC-10", "rescinded" : "1" } ] }